Psyllid ID: psy2838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
HVTYSYNTPSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGRGRPKLEVPGGGRMVGNVVGGSGVGGGQRMVENQRMLGNGGGDQVRGNGDDIRGDGDQGEEEEESEMEEEEEEAGFE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEccccccEEccccccccccccccccccEEEcccccccccccccccccccEcccccHHEHccccccccccccccccccEcccccHHHHcHHcccccccccccccccEccccHHHHHHHHHHEHHccccccccccccccEEccccHHHHHEHEcccccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHccccccEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHEEcccccEEccccccEEcccccHHEcEEEccccccccccccccccEEEcccccccccccccccEcccccHHEHcEEccccccccccccccHHHHHHHHccccccccccccccEEccc
Coil and Loop (DISEMBL)
hvtysyntpspapsttsrrdsfppphplgqngfdptgqvkseynyyqlssDEKFEILKSISasftpgyggflpntpplghhylspsglpgkaeYLEIHFCFVYTwvktepnqtnhppsetedsddplgesmvvepeytpvtqiggtaglefnrsqfektfqnysmtttghrggkgppvkkfpcdqcgksftlkqnltyHVNSihlgvrikcdfcdktfahkpnlIAHMnsahngvrfkcdhcvksfnqkpnliSHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTvhqaqkykcadcgrlfaQEHTLRThtlsvhsgvrltcrtcglfcdsKRALTAHVreahpgceykkrgrgrpklevpgggrmvgnvvggsgvgggqrMVENQrmlgngggdqvrgngddirgdgdqgeeeeesemeeeeeeagfe
Flexible Loop (DISEMBL)
hvtysyntpspapsttsrrdsfpPPHPLgqngfdptgqVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTepnqtnhppsetedsddpLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTtghrggkgppVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRthtlsvhsgvrLTCRTCGLFCDSKRALtahvreahpgceykkrgrgrpklevpgggrmvgnvVGGSGVGGGQRMVENQRMLgngggdqvrgngdDIRGDGdqgeeeeesemeeeeeeagfe
Low Complexity Region (SEG)
HVTYSYNTPSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGRGRPKLEvpgggrmvgnvvggsgvgggQRMVENQRMLgngggdqvrgngddirgdgdqgeeeeesemeeeeeeAGFE
Disordered region (IsUnstruct)
******************************************YNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVK*******************************PVTQIGGTAGLEFNR**FEKTFQ****************VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC***********************************************************************************
Disordered Region (DISOPRED)
***Y**********************PLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGRGRPKLEVPGGGRMVGNVVGGSGVGGGQRMVENQRMLGNGGGDQVRGNGDDIR************************
Disordered Region (DISEMBL)
*********************FPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTE******************GESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGRGRPKLEVPGGGRMVGNVVGGSGVGGGQRMVENQRMLGNGGGDQVRGNGDDIR************************
Disordered Region (DISPRO)
*****YNTPSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGRGRPKLEVPGGGRMVGNVVGGSGVGGGQRMVENQRMLGNGGGDQVRGNGDDIRGDGDQGEEEEESEMEEEEEEAG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HVTYSYNTPSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGRGRPKLEVPGGGRMVGNVVGGSGVGGGQRMVENQRMLGNGGGDQVRGNGDDIRGDGDQGEEEEESEMEEEEEEAGFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q07230	614	Zinc finger and SCAN doma	yes	N/A	0.515	0.384	0.364	6e-26
Q7Z7L9	614	Zinc finger and SCAN doma	yes	N/A	0.484	0.361	0.373	9e-26
P08042	402	Zinc finger protein 1 OS=	no	N/A	0.475	0.542	0.361	9e-26
Q5RCD9	645	Zinc finger and SCAN doma	yes	N/A	0.484	0.344	0.373	2e-25
Q5RC79	407	Zinc finger protein 1 hom	no	N/A	0.412	0.464	0.367	3e-25
Q6P2D0	407	Zinc finger protein 1 hom	no	N/A	0.412	0.464	0.367	3e-25
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.438	0.287	0.386	6e-25
Q96HQ0	510	Zinc finger protein 419 O	no	N/A	0.469	0.421	0.382	1e-24
Q80W31	679	Zinc finger protein 569 O	no	N/A	0.417	0.281	0.406	1e-24
Q9NV72	465	Zinc finger protein 701 O	no	N/A	0.410	0.404	0.405	1e-24

>sp|Q07230|ZSCA2_MOUSE Zinc finger and SCAN domain-containing protein 2 OS=Mus musculus GN=Zscan2 PE=1 SV=1

 Score =  119 bits (298), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 129/255 (50%), Gaps = 19/255 (7%)

Query: 126 PLGESMVVEPEYTPVTQIGGTAGLEFNRSQFE-----KTFQNYSMTTTGHRGGKGPPVKK 180
           P  +  VV  E   V Q+ G  G       +E     KTF   S   T  R   G   K 
Sbjct: 192 PGEDPRVVPSEGREVGQLIGLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGE--KY 249

Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FK 238
           + CD+CGKSF+   N + H  + H G +  KC  C K+F+   NLI H    H G + F+
Sbjct: 250 YKCDECGKSFSDGSNFSRH-QTTHTGEKPYKCRDCGKSFSRSANLITHQR-IHTGEKPFQ 307

Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           C  C KSF++ PNLI+H ++ H G K Y C EC K+F  + +L +H Q IH G K Y C+
Sbjct: 308 CAECGKSFSRSPNLIAHQRT-HTGEKPYSCPECGKSFGNRSSLNTH-QGIHTGEKPYACK 365

Query: 297 VCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTC 354
            C +S++  +NL+ H   +H  +K YKC +CG+ F+Q   L TH  + H+G +   C  C
Sbjct: 366 ECGESFSYNSNLIRHQ-RIHTGEKPYKCTECGQKFSQSSALITHRRT-HTGEKPYQCGEC 423

Query: 355 GLFCDSKRALTAHVR 369
           G        L  H R
Sbjct: 424 GKNFSRSSNLATHRR 438

May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.
Mus musculus (taxid: 10090)

>sp|Q7Z7L9|ZSCA2_HUMAN Zinc finger and SCAN domain-containing protein 2 OS=Homo sapiens GN=ZSCAN2 PE=2 SV=2

 Score =  118 bits (296), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 123/241 (51%), Gaps = 19/241 (7%)

Query: 140 VTQIGGTAGLEFNRSQFE-----KTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQ 194
           V Q+ G  G       +E     KTF   S   T  R   G   K + CD+CGKSF+   
Sbjct: 206 VGQLIGLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGE--KYYKCDECGKSFSDGS 263

Query: 195 NLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNL 252
           N + H  + H G +  KC  C K+F+   NLI H    H G + F+C  C KSF++ PNL
Sbjct: 264 NFSRH-QTTHTGEKPYKCRDCGKSFSRSANLITHQR-IHTGEKPFQCAECGKSFSRSPNL 321

Query: 253 ISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLS 310
           I+H ++ H G K Y C EC K+F  + +L +H Q IH G K Y C+ C +S++  +NL+ 
Sbjct: 322 IAHQRT-HTGEKPYSCPECGKSFGNRSSLNTH-QGIHTGEKPYECKECGESFSYNSNLIR 379

Query: 311 HMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHV 368
           H   +H  +K YKC DCG+ F+Q   L TH    H+G +   C  CG        L  H 
Sbjct: 380 HQ-RIHTGEKPYKCTDCGQRFSQSSALITHR-RTHTGEKPYQCSECGKSFSRSSNLATHR 437

Query: 369 R 369
           R
Sbjct: 438 R 438

May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|P08042|ZFP1_MOUSE Zinc finger protein 1 OS=Mus musculus GN=Zfp1 PE=2 SV=3

 Score =  118 bits (296), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 147 AGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
           AGLE++         ++      HR  K   V+ F C+ C K+F+ K  L  H   IH G
Sbjct: 149 AGLEYSEYNGNGRALSHKDAIFKHRKIKSL-VQPFVCNYCDKTFSFKSLLVSH-KRIHTG 206

Query: 207 VR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
            +  +CD C KTF+HK NLI H    H G + F+C  C K+F  + NLI H ++  E   
Sbjct: 207 EKPYECDVCQKTFSHKANLIKHQR-IHTGEKPFECPECGKAFTHQSNLIVHQRAHMEKKP 265

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
           Y C EC KTFAQK  L +H Q IH G + Y C  C+K++ + +NL+ H       ++Y+C
Sbjct: 266 YGCSECGKTFAQKFELTTH-QRIHTGERPYECNECAKTFFKKSNLIIHQKIHTGEKRYEC 324

Query: 324 ADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
           ++CG+ F Q   L  H    H+G +   C  CG     +  L  H+R
Sbjct: 325 SECGKSFIQNSQLIIHR-RTHTGEKPYECTECGKTFSQRSTLRLHLR 370

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q5RCD9|ZSCA2_PONAB Zinc finger and SCAN domain-containing protein 2 OS=Pongo abelii GN=ZSCAN2 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 123/241 (51%), Gaps = 19/241 (7%)

Query: 140 VTQIGGTAGLEFNRSQFE-----KTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQ 194
           V Q+ G  G       +E     KTF   S   T  R   G   K + CD+CGKSF+   
Sbjct: 237 VGQLIGLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGE--KYYKCDECGKSFSDGS 294

Query: 195 NLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNL 252
           N + H  + H G +  KC  C K+F+   NLI H    H G + F+C  C KSF++ PNL
Sbjct: 295 NFSRH-QTTHTGEKPYKCRDCGKSFSRSANLITHQR-IHTGEKPFQCAECGKSFSRSPNL 352

Query: 253 ISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLS 310
           I+H ++ H G K Y C EC K+F  + +L +H Q IH G K Y C+ C +S++  +NL+ 
Sbjct: 353 IAHQRT-HTGEKPYSCPECGKSFGNRSSLNTH-QGIHTGEKPYECKECGESFSYNSNLIR 410

Query: 311 HMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHV 368
           H   +H  +K YKC DCG+ F+Q   L TH    H+G +   C  CG        L  H 
Sbjct: 411 HQ-RIHTGEKPYKCTDCGQRFSQSSALITHR-RTHTGEKPYQCSECGKNFSRSSNLATHR 468

Query: 369 R 369
           R
Sbjct: 469 R 469

May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q5RC79|ZFP1_PONAB Zinc finger protein 1 homolog OS=Pongo abelii GN=ZFP1 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 109/223 (48%), Gaps = 34/223 (15%)

Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR 236
           V+ F C  C K+F+ K  L  H   IH G +  +C+ C KTF+HK NLI H    H G +
Sbjct: 181 VQPFICTYCDKAFSFKSLLISH-KRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEK 238

Query: 237 -FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHV----------- 284
            F+C  C K+F  + NLI H ++  E   Y+C EC KTFAQK  L +H            
Sbjct: 239 PFECPECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTHQRIHTGERPYEC 298

Query: 285 ----------------QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCG 327
                           Q IH G K Y C  C KS+ Q + L+ HM T    + Y+C +CG
Sbjct: 299 NECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEKPYECTECG 358

Query: 328 RLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
           + F+Q  TLR H L +H+G +   C  CG     K  L+ H R
Sbjct: 359 KTFSQRSTLRLH-LRIHTGEKPYECSECGKAFSRKSRLSVHQR 400

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q6P2D0|ZFP1_HUMAN Zinc finger protein 1 homolog OS=Homo sapiens GN=ZFP1 PE=2 SV=2

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 109/223 (48%), Gaps = 34/223 (15%)

Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR 236
           V+ F C  C K+F+ K  L  H   IH G +  +C+ C KTF+HK NLI H    H G +
Sbjct: 181 VQPFICTYCDKAFSFKSLLISH-KRIHTGEKPYECNVCKKTFSHKANLIKHQR-IHTGEK 238

Query: 237 -FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHV----------- 284
            F+C  C K+F  + NLI H ++  E   Y+C EC KTFAQK  L +H            
Sbjct: 239 PFECPECGKAFTHQSNLIVHQRAHMEKKPYECSECGKTFAQKFELTTHQRIHTGERPYEC 298

Query: 285 ----------------QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCG 327
                           Q IH G K Y C  C KS+ Q + L+ HM T    + Y+C +CG
Sbjct: 299 NECAKTFFKKSNLIIHQKIHTGEKRYECSECGKSFIQNSQLIIHMRTHTGEKPYECTECG 358

Query: 328 RLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
           + F+Q  TLR H L +H+G +   C  CG     K  L+ H R
Sbjct: 359 KTFSQRSTLRLH-LRIHTGEKPYECSECGKAFSRKSRLSVHQR 400

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 116/220 (52%), Gaps = 19/220 (8%)

Query: 160 FQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTF 218
            +N+  T TG R         + CD+CGK+F LK  L  H +  H G +  KC+ C K F
Sbjct: 493 LRNHRRTHTGER--------PYKCDECGKAFKLKSGLRKH-HRTHTGEKPYKCNQCGKAF 543

Query: 219 AHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQ 276
             K  L  H +  H G + +KC+HC ++F+QK NL  H ++ H G K Y+CEEC KTF Q
Sbjct: 544 GQKSQLRGH-HRIHTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQCEECGKTFRQ 601

Query: 277 KQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHT 335
           K NL  H Q  H G K Y C  C K++++ + L  H  T    + Y C  CG  F+Q+  
Sbjct: 602 KSNLRGH-QRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSN 660

Query: 336 LRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVREAHPG 374
           LR H    H+G +   C  CG     K +L  H ++AHPG
Sbjct: 661 LRVHQ-RTHTGEKPYKCDKCGRTFSQKSSLREH-QKAHPG 698

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q96HQ0|ZN419_HUMAN Zinc finger protein 419 OS=Homo sapiens GN=ZNF419 PE=2 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 119/230 (51%), Gaps = 15/230 (6%)

Query: 151 FNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-I 209
           F  S+  K F++ S     H+   G  V+ + C +CGK F+   +L  H   IH G R  
Sbjct: 287 FTCSECGKAFRHNSTLVQHHKIHTG--VRPYECSECGKLFSFNSSLMKH-QRIHTGERPY 343

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
           KC  C K ++HK NLI H    H G R +KC  C K F Q  +L+ H K VH G K +KC
Sbjct: 344 KCSECGKFYSHKSNLIKHWR-VHTGERPYKCSDCGKFFTQCSSLMQHQK-VHTGEKPFKC 401

Query: 268 EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCAD 325
            EC + F +   L+ H Q +H G K Y C  C K ++Q + L+ H   VH  +K +KC +
Sbjct: 402 NECGRFFRENSTLVRH-QRVHTGAKPYECRECGKFFSQSSTLMQH-RKVHIGEKPFKCNE 459

Query: 326 CGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVREAHPG 374
           CGRLF +  +L  H   VH+G +   CR CG F     +L  H R  H G
Sbjct: 460 CGRLFRENSSLVKHQ-RVHTGAKPYECRECGKFFRHNSSLFKH-RRIHTG 507

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q80W31|ZN569_MOUSE Zinc finger protein 569 OS=Mus musculus GN=Znf569 PE=2 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 107/204 (52%), Gaps = 13/204 (6%)

Query: 170 HRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMN 229
           H GGK      + C QCGK F+ K+ L  H          +C  C KTF    NLI H  
Sbjct: 201 HTGGK-----LYECHQCGKGFSHKEKLINHHKLHSREQCYECSECGKTFIKMSNLIRHQR 255

Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAI 287
             H G + + C  C KSF QK NLI H K +H G K YKC EC K+F+QKQ+L++H Q +
Sbjct: 256 -IHTGEKPYVCQECGKSFGQKSNLIDHEK-IHTGEKPYKCNECGKSFSQKQSLVAH-QKV 312

Query: 288 HMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG 346
           H G K Y C  C K++ +V +L  HM      + YKC  CG+ F+Q   L  H + VH+G
Sbjct: 313 HTGEKPYACNECGKAFPRVASLALHMRGHTGEKPYKCDKCGKAFSQFSMLIIH-VRVHTG 371

Query: 347 VR-LTCRTCGLFCDSKRALTAHVR 369
            +   C  CG       ALT H+R
Sbjct: 372 EKPYECGECGKAFSQSSALTVHIR 395

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q9NV72|ZN701_HUMAN Zinc finger protein 701 OS=Homo sapiens GN=ZNF701 PE=2 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 113/202 (55%), Gaps = 14/202 (6%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
           K++ CD CGK F  K+ L  H    H G     C+ C KTF+H   L+ H  + H G + 
Sbjct: 241 KQYKCDVCGKDFHQKRYLACH--RCHTGENPYTCNECGKTFSHNSALLVH-KAIHTGEKP 297

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
           +KC+ C K FNQ+ NL  H + VH G K YKCEEC K F++K +L  H + IH G K Y 
Sbjct: 298 YKCNECGKVFNQQSNLARHHR-VHTGEKPYKCEECDKVFSRKSHLERH-RRIHTGEKPYK 355

Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSG-VRLTCR 352
           C+VC K++ + ++L  H T +H  +K YKC +CG+ F Q  +L  H + +H+G  R  C 
Sbjct: 356 CKVCDKAFRRDSHLAQH-TVIHTGEKPYKCNECGKTFVQNSSLVMHKV-IHTGEKRYKCN 413

Query: 353 TCGLFCDSKRALTAHVREAHPG 374
            CG   + K  L  H R  H G
Sbjct: 414 ECGKVFNHKSNLACH-RRLHTG 434

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
353233176	486	putative zinc finger protein [Schistosom	0.410	0.386	0.401	5e-37
256085592	486	zinc finger protein [Schistosoma mansoni	0.410	0.386	0.401	9e-37
256085594	357	zinc finger protein [Schistosoma mansoni	0.432	0.554	0.383	8e-35
213983123	1036	uncharacterized protein LOC100216020 [Xe	0.403	0.178	0.446	3e-28
326667262	476	PREDICTED: zinc finger protein 569-like	0.469	0.451	0.410	6e-28
321451515	464	hypothetical protein DAPPUDRAFT_335885 [	0.419	0.413	0.355	2e-27
326667264	420	PREDICTED: zinc finger protein 569-like	0.469	0.511	0.410	2e-27
301626399	2034	PREDICTED: hypothetical protein LOC10049	0.403	0.090	0.426	1e-26
427786539	384	Putative zinc finger protein [Rhipicepha	0.408	0.486	0.410	1e-26
326666730	1718	PREDICTED: zinc finger protein 729 [Dani	0.406	0.108	0.433	2e-26

>gi|353233176|emb|CCD80531.1| putative zinc finger protein [Schistosoma mansoni]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 115/197 (58%)

Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD 240
           FPCD+CGK F+    L  H+ S+H G++  C+ CD+ +  + +L  H+ + H GV+F CD
Sbjct: 262 FPCDECGKIFSSNSALCRHLQSVHQGIKYPCNQCDRLYTSRFHLNEHLRANHEGVKFTCD 321

Query: 241 HCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSK 300
            C K F  K  L  H K++H+GIKY C++C+K F+ K  L  HV+AIH GIKY C+ C +
Sbjct: 322 LCNKEFAFKVGLDEHNKNIHKGIKYPCDQCSKKFSSKCMLNIHVKAIHKGIKYICKQCDR 381

Query: 301 SYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDS 360
            +N  +NL  HM +VH+   ++C +C + F  +  L  H  S+H GVR TC  C      
Sbjct: 382 KFNCKSNLNGHMKSVHEGITFQCDECDQKFTAKCQLNRHIQSIHEGVRFTCEQCDKKFTK 441

Query: 361 KRALTAHVREAHPGCEY 377
           +  L  HV+  H G  Y
Sbjct: 442 QSTLHDHVKVVHEGLRY 458

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|256085592|ref|XP_002579001.1| zinc finger protein [Schistosoma mansoni]

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 115/197 (58%)

Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD 240
           FPCD+CGK F+    L  H+ S+H G++  C+ CD+ +  + +L  H+ + H GV+F CD
Sbjct: 262 FPCDECGKIFSSNGALCRHLQSVHQGIKYPCNQCDRLYTSRFHLNEHLRANHEGVKFTCD 321

Query: 241 HCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSK 300
            C K F  K  L  H K++H+GIKY C++C+K F+ K  L  HV+AIH GIKY C+ C +
Sbjct: 322 LCNKEFAFKVGLDEHNKNIHKGIKYPCDQCSKKFSSKCMLNIHVKAIHKGIKYICKQCDR 381

Query: 301 SYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDS 360
            +N  +NL  HM +VH+   ++C +C + F  +  L  H  S+H GVR TC  C      
Sbjct: 382 KFNCKSNLNGHMKSVHEGITFQCDECDQKFTAKCQLNRHIQSIHEGVRFTCEQCDKKFTK 441

Query: 361 KRALTAHVREAHPGCEY 377
           +  L  HV+  H G  Y
Sbjct: 442 QSTLHDHVKVVHEGLRY 458

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|256085594|ref|XP_002579002.1| zinc finger protein [Schistosoma mansoni] gi|353233177|emb|CCD80532.1| putative zinc finger protein [Schistosoma mansoni]

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 76/198 (38%), Positives = 107/198 (54%)

Query: 180 KFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC 239
           K+ C QC K+FT K +L  HV SIH  ++  CD C   F  K  LI HM   H G ++ C
Sbjct: 157 KYSCVQCYKTFTTKSHLNKHVKSIHEKLKYACDQCSAEFTSKFYLIEHMKVIHEGKKYPC 216

Query: 240 DHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCS 299
             C K+F+ K NL  H+K +H+GI++ C  C K FA K NL  H + IH GI+Y C  C 
Sbjct: 217 YQCDKNFSSKCNLNIHVKVIHQGIRFICNVCNKQFAFKGNLDRHHKNIHEGIRYACNRCD 276

Query: 300 KSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCD 359
           + +    +L+ H+  +H+  +Y+C  C R F  +  L  H  SVH+GVR  C  C     
Sbjct: 277 RKFTTKYDLIGHIKVIHEGTEYRCDQCNRKFTSKANLNEHLRSVHTGVRFACEQCDRKYI 336

Query: 360 SKRALTAHVREAHPGCEY 377
            +  L  H++  H G E+
Sbjct: 337 QRSGLNRHIKMVHEGAEF 354

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|213983123|ref|NP_001135483.1| uncharacterized protein LOC100216020 [Xenopus (Silurana) tropicalis] gi|189442283|gb|AAI67589.1| Unknown (protein for MGC:184844) [Xenopus (Silurana) tropicalis]

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 12/197 (6%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
           K FPC +CGKSF +K+NL  H  +IH G R   C  C K F+ K NL  H  + H GV+ 
Sbjct: 776 KAFPCTECGKSFYVKRNLWRH-QTIHTGERDFTCRECGKCFSQKNNLYKHQ-AVHTGVKP 833

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
           F C  C KSF+QK +L SH+ ++H G+K Y C EC K+F+  +NL SH + IH G K +T
Sbjct: 834 FTCTECGKSFSQKSHLHSHL-NIHTGVKPYTCAECGKSFSHNRNLYSH-KKIHTGEKAFT 891

Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCR 352
           C  C K ++Q +NLL H T VH  +K + C DCGR F+Q+  L  H  ++H+G +  TC 
Sbjct: 892 CTDCGKCFSQKSNLLKHQT-VHTGEKPFTCTDCGRSFSQKSQLHRHQ-NIHTGAKPFTCT 949

Query: 353 TCGLFCDSKRALTAHVR 369
            CG     K +L +H R
Sbjct: 950 ECGKSFSLKCSLQSHQR 966

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667262|ref|XP_003198543.1| PREDICTED: zinc finger protein 569-like isoform 1 [Danio rerio]

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 127/229 (55%), Gaps = 14/229 (6%)

Query: 147 AGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
           +G  F+  Q  K+F   S      R   G   K + C+QCGKSF  KQ+   H+  IH G
Sbjct: 78  SGCNFSCKQCRKSFSQKSKLDVHMRVHTGE--KPYTCEQCGKSFGQKQSFKAHMR-IHTG 134

Query: 207 VR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
            R   C  C K+F H  NL AHM   H G + F C+ C KSF QKPNL  H++ VH G K
Sbjct: 135 ERKFTCQECGKSFYHAGNLAAHMR-IHTGEKPFSCNQCGKSFCQKPNLDVHMR-VHTGEK 192

Query: 265 -YKCEECTKTFAQKQNLLSHVQAIHMG-IKYTCEVCSKSYNQVTNLLSHMTTVHQAQK-Y 321
            Y CE+C K+F+QKQ   +H++ IH G  K+TC+ C KS+    NL +HM  +H  +K +
Sbjct: 193 PYTCEQCGKSFSQKQGFKAHMR-IHTGERKFTCQQCGKSFYHAGNLAAHM-RIHTGEKPF 250

Query: 322 KCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
            C  CG+ F Q+  L  H + VH+G +  TC  CG     K++L  H+R
Sbjct: 251 SCKQCGKSFCQKPNLEDH-MRVHTGEKPYTCEQCGKSFSQKQSLKTHMR 298

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321451515|gb|EFX63144.1| hypothetical protein DAPPUDRAFT_335885 [Daphnia pulex]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 102/194 (52%)

Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD 240
           F CD C K F  K++L  H  SIH    + C+ C++ F     L AH  + H G +++CD
Sbjct: 23  FKCDLCVKFFRNKESLNMHNQSIHSRNSVTCETCERVFRSMIYLNAHKRNVHTGKKWECD 82

Query: 241 HCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSK 300
            C KSFN K  L +H K+VH G K +C+ C K++   + L  H + +H   K+ CE C K
Sbjct: 83  LCEKSFNTKSYLGAHKKTVHTGKKMQCDLCEKSYKTMKILDVHKRNVHTEKKWECETCEK 142

Query: 301 SYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDS 360
            +  +  L +H  TVH  +K++C  C + F  +  L  H  +VH+G ++ C  C     +
Sbjct: 143 VFRSMLYLNAHKKTVHTGKKWECDLCEKSFNTKSYLGAHKKTVHTGKKMQCDLCDKSYKT 202

Query: 361 KRALTAHVREAHPG 374
           K  L AH R  H G
Sbjct: 203 KGNLDAHKRTVHTG 216

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326667264|ref|XP_003198544.1| PREDICTED: zinc finger protein 569-like isoform 2 [Danio rerio]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 126/229 (55%), Gaps = 14/229 (6%)

Query: 147 AGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
           +G  F+  Q  K+F   S      R   G   K + C+QCGKSF  KQ+   H+  IH G
Sbjct: 78  SGCNFSCKQCRKSFSQKSKLDVHMRVHTGE--KPYTCEQCGKSFGQKQSFKAHMR-IHTG 134

Query: 207 VR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
            R   C  C K+F H  NL AHM   H G + F C+ C KSF QKPNL  H++ VH G K
Sbjct: 135 ERKFTCQECGKSFYHAGNLAAHMR-IHTGEKPFSCNQCGKSFCQKPNLDVHMR-VHTGEK 192

Query: 265 -YKCEECTKTFAQKQNLLSHVQAIHMG-IKYTCEVCSKSYNQVTNLLSHMTTVHQAQK-Y 321
            Y CE+C K+F+QKQ   +H++ IH G  K+TC+ C KS+    NL +HM  +H  +K +
Sbjct: 193 PYTCEQCGKSFSQKQGFKAHMR-IHTGERKFTCQQCGKSFYHAGNLAAHM-RIHTGEKPF 250

Query: 322 KCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
            C  CG+ F Q+  L  H + VH+G +  TC  CG     K+ L  H+R
Sbjct: 251 SCKQCGKSFCQKPNLEDH-MRVHTGEKPYTCEQCGKSFSKKQDLYIHMR 298

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301626399|ref|XP_002942387.1| PREDICTED: hypothetical protein LOC100493142 [Xenopus (Silurana) tropicalis]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 114/197 (57%), Gaps = 12/197 (6%)

Query: 179  KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
            K F C +CGK F  K  L  H+  IH G +   C  C K FAHK  L++HM   H G + 
Sbjct: 1304 KPFTCTECGKGFAHKNKLVSHMK-IHTGEKPFTCTECGKGFAHKNKLVSHM-YIHTGEKP 1361

Query: 237  FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
            F C  C K F QK NL+SH+K +H G K + C EC K FAQK NL+SH++ IH G K +T
Sbjct: 1362 FTCTECGKGFAQKNNLVSHMK-IHTGEKPFTCTECGKGFAQKNNLVSHMK-IHTGEKPFT 1419

Query: 295  CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCR 352
            C  C KS+ Q   L+SHM  +H  +K + C +CG+ FA ++ L +H + +H G +  TC 
Sbjct: 1420 CTECGKSFAQKNVLVSHM-KIHTGEKPFTCTECGKGFAHKNHLVSH-IKIHKGEKPFTCT 1477

Query: 353  TCGLFCDSKRALTAHVR 369
             CG     K  L +H++
Sbjct: 1478 ECGKGFARKNHLVSHIK 1494

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427786539|gb|JAA58721.1| Putative zinc finger protein [Rhipicephalus pulchellus]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 8/195 (4%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
           K + CD CGK FT + +L YH +++HLG +   C+ C K F  K NL  HMNS H G R 
Sbjct: 8   KPYNCDVCGKGFTQRSSLDYH-HTLHLGEKPFGCEVCGKRFTQKGNLKTHMNS-HTGARP 65

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           F+C+ C + F QK N+ +H+ + +    Y CE C K F  K NL +HV A H G+K + C
Sbjct: 66  FRCEICGRGFTQKGNMKTHLATHYGEKPYACEVCGKRFTLKGNLKTHVMA-HEGVKPFAC 124

Query: 296 EVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRL-TCRTC 354
           EVC KS++Q  +L  HM +    + Y C  CG+ F Q+  ++TH  S HSG +L TC+ C
Sbjct: 125 EVCHKSFSQKLSLEYHMNSHMGRKPYACEVCGKGFTQKGNMKTHMRS-HSGEKLHTCQIC 183

Query: 355 GLFCDSKRALTAHVR 369
           G     K  +  H++
Sbjct: 184 GKGFTQKGNMKTHMK 198

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326666730|ref|XP_003198356.1| PREDICTED: zinc finger protein 729 [Danio rerio]

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 10/196 (5%)

Query: 179  KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
            KKFPC +CGKSF    NL  H+  IH G +   C  C K+F+ KPNL  HM   HNG + 
Sbjct: 1454 KKFPCQECGKSFYHAGNLAAHMR-IHTGEKPFSCKQCGKSFSQKPNLDIHMR-IHNGEKP 1511

Query: 237  FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG-IKYT 294
            F C  C KSF QKPNL  H++ VH G K Y CE+C K+F+QKQ+L +H++ IH G  K+ 
Sbjct: 1512 FSCKQCGKSFCQKPNLDDHMR-VHTGEKPYTCEQCGKSFSQKQSLNTHMR-IHTGERKFP 1569

Query: 295  CEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRT 353
            C+ C KS+    NL +HM T    + + C  CG+ F+++  L  H + VH+  +  TC  
Sbjct: 1570 CQQCGKSFYHAGNLAAHMRTHTGEKPFSCKQCGKSFSKKPNLIAH-MRVHTSEKPYTCEQ 1628

Query: 354  CGLFCDSKRALTAHVR 369
            CG     K+ L  H+R
Sbjct: 1629 CGKSLGKKQDLYIHMR 1644

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
ZFIN|ZDB-GENE-110913-80	421	si:dkey-247i3.4 "si:dkey-247i3	0.412	0.448	0.440	2.4e-37
ZFIN|ZDB-GENE-120703-48	448	si:dkey-8o9.5 "si:dkey-8o9.5"	0.469	0.479	0.404	3.5e-36
ZFIN|ZDB-GENE-110914-25	983	si:dkey-196n19.7 "si:dkey-196n	0.460	0.214	0.404	2.3e-35
ZFIN|ZDB-GENE-110914-160	1003	si:dkey-240n22.7 "si:dkey-240n	0.412	0.188	0.425	2.4e-35
UNIPROTKB|F1MQU6	622	F1MQU6 "Uncharacterized protei	0.412	0.303	0.410	4.5e-35
UNIPROTKB|F1MVL7	640	F1MVL7 "Uncharacterized protei	0.491	0.351	0.372	4.6e-35
UNIPROTKB|F1N5B8	932	F1N5B8 "Uncharacterized protei	0.478	0.234	0.405	1.4e-34
UNIPROTKB|A6NK75	572	ZNF98 "Zinc finger protein 98"	0.5	0.400	0.368	2e-34
UNIPROTKB|G3V1K9	567	ZNF782 "Zinc finger protein 78	0.469	0.379	0.382	3.1e-34
UNIPROTKB|Q9P255	531	ZNF492 "Zinc finger protein 49	0.491	0.423	0.370	3.6e-34

ZFIN|ZDB-GENE-110913-80 si:dkey-247i3.4 "si:dkey-247i3.4" [Danio rerio (taxid:7955)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 89/202 (44%), Positives = 119/202 (58%)

Query:   179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
             KKFPC +CGKSF    NL  H+  IH G +   C  C K+F+ KPNL  HM   HNG + 
Sbjct:   137 KKFPCQECGKSFYHAGNLAAHMR-IHTGEKPFSCKQCGKSFSQKPNLDIHMR-IHNGEKP 194

Query:   237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGI-KYT 294
             F C  C KSF QKPNL  H++ VH G K Y CE+C K+F+QKQ+L +H++ IH G  K+ 
Sbjct:   195 FSCKQCGKSFCQKPNLDDHMR-VHTGEKPYTCEQCGKSFSQKQSLNTHMR-IHTGERKFP 252

Query:   295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCR 352
             C+ C KS+    NL +HM T H  +K + C  CG+ F+++  L  H + VH+  +  TC 
Sbjct:   253 CQQCGKSFYHAGNLAAHMRT-HTGEKPFSCKQCGKSFSKKPNLIAH-MRVHTSEKPYTCE 310

Query:   353 TCGLFCDSKRALTAHVREAHPG 374
              CG     K+ L  H+R  H G
Sbjct:   311 QCGKSLGKKQDLYIHMR-IHTG 331

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-120703-48 si:dkey-8o9.5 "si:dkey-8o9.5" [Danio rerio (taxid:7955)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 93/230 (40%), Positives = 127/230 (55%)

Query:   151 FNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-I 209
             F+  Q  K+F   S      R   G   K + C+QCG+SF+ KQ+   H+  IH G R  
Sbjct:   194 FSCKQCGKSFSQKSHLDIHMRVHTGE--KPYTCEQCGQSFSQKQSFKSHMR-IHTGERPY 250

Query:   210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
              C  C K F H  NL AHM   H G + F C  C KSF++K NLI+H++ VH   K Y C
Sbjct:   251 TCQQCGKNFRHARNLAAHMR-IHTGEKPFSCKQCGKSFSKKANLIAHMR-VHTREKPYTC 308

Query:   268 EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCAD 325
             E+C K+F QKQ+L  H++ IH G K YTC  C KS+  +T L  HM T H  +K + CA 
Sbjct:   309 EQCGKSFGQKQDLYIHMR-IHTGEKPYTCTECGKSFPHITTLKHHMRT-HTGEKPFACAQ 366

Query:   326 CGRLFAQEHTLRTHTLSVHSG-VRLTCRTCGLFCDSKRALTAHVREAHPG 374
             CG+ F  + +L+ H ++ HSG +  TC  CG     K ++  H++  H G
Sbjct:   367 CGKSFTTKTSLKNH-MNGHSGTIVFTCDQCGKSLTRKDSIKNHMK-IHSG 414

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-25 si:dkey-196n19.7 "si:dkey-196n19.7" [Danio rerio (taxid:7955)]

 Score = 393 (143.4 bits), Expect = 2.3e-35, P = 2.3e-35
 Identities = 91/225 (40%), Positives = 126/225 (56%)

Query:   151 FNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-I 209
             F+  Q  K+F   S      R   G   K + C+QCGKSF+ KQN   H+  IH G R  
Sbjct:   764 FSCKQCGKSFSQKSNLDVHMRVHTGE--KPYTCEQCGKSFSQKQNFKIHMR-IHTGERSC 820

Query:   210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
              C  C K+F H  NL  HM + H G + F C  C KSF++KPNLI+H++ VH   K Y C
Sbjct:   821 TCQQCGKSFRHARNLAVHMRT-HTGEKPFSCKQCRKSFSKKPNLIAHMR-VHTREKPYTC 878

Query:   268 EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCAD 325
             E+C K+F QKQ+L  H++ IH G K YTC  C KS+   + L  HM T H  +K + CA 
Sbjct:   879 EQCGKSFGQKQDLYIHMR-IHTGEKPYTCTECGKSFAHKSTLNHHMRT-HTGEKPFACAQ 936

Query:   326 CGRLFAQEHTLRTHTLSVHSG-VRLTCRTCGLFCDSKRALTAHVR 369
             CG+ F  + +L+ H ++ H+G +  TC  CG     K ++  H++
Sbjct:   937 CGKSFTTKFSLKNH-INGHTGTIVFTCDQCGKSLTRKDSIKNHMK 980

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-160 si:dkey-240n22.7 "si:dkey-240n22.7" [Danio rerio (taxid:7955)]

 Score = 393 (143.4 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 86/202 (42%), Positives = 118/202 (58%)

Query:   179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
             K F C QCGKSF+ KQ L  H+  IH G +   C  C KTF  K NL+ HM   H G + 
Sbjct:    61 KPFTCQQCGKSFSQKQTLKVHMR-IHTGEKPFSCHHCGKTFTDKQNLMVHMR-IHTGDKP 118

Query:   237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
             + C  C K+F+QKP+L  H+  +H G K Y+C++C K+F +KQNL  H+ +IH G K Y 
Sbjct:   119 YICTVCGKNFSQKPSLDVHV-GIHTGEKPYQCQQCGKSFNRKQNLQVHM-SIHSGDKPYQ 176

Query:   295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCR 352
             C+ C KS+N+  NL  HM  +H  +K + C  CG+ F+Q+  L  H   +H+G R  TC+
Sbjct:   177 CQQCGKSFNRKQNLQVHMR-IHTGEKPFSCHQCGKSFSQKRNLAIHR-RIHTGERPYTCQ 234

Query:   353 TCGLFCDSKRALTAHVREAHPG 374
              CG     K+ L  H+R  H G
Sbjct:   235 QCGKSFTQKQNLKVHMR-IHTG 255

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MQU6 F1MQU6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 384 (140.2 bits), Expect = 4.5e-35, P = 4.5e-35
 Identities = 83/202 (41%), Positives = 121/202 (59%)

Query:   179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
             K + CD+CGK+F +K +L  H  ++H G +  KC+ C K F  K +L++H  + H G + 
Sbjct:   202 KPYKCDECGKAFRVKSSLLSH-QTVHTGEKPYKCNDCGKAFRIKSSLLSHQ-TIHTGEKP 259

Query:   237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
             +KCD C K+F  K +L+SH K++H G K YKC+EC K F  K  LLSH Q +H G K Y 
Sbjct:   260 YKCDECGKAFRVKSSLLSH-KTIHTGEKPYKCDECGKAFHVKSILLSH-QTVHTGEKLYK 317

Query:   295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCR 352
             C+ C K++   ++LLSH T VH  +K YKC DCG+ F  + +L +H  ++H+G +   C 
Sbjct:   318 CDECGKAFRVKSSLLSHQT-VHTGEKPYKCNDCGKAFRVKSSLLSHQ-TIHTGEKPYKCD 375

Query:   353 TCGLFCDSKRALTAHVREAHPG 374
              CG     K  L +H +  H G
Sbjct:   376 ECGKAFHVKSILLSH-QTVHTG 396

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MVL7 F1MVL7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 4.6e-35, Sum P(2) = 4.6e-35
 Identities = 89/239 (37%), Positives = 122/239 (51%)

Query:   142 QIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVN 201
             Q G T    +  S  EK+F   S      R   G   K + C +CGKSF    +L  H  
Sbjct:   379 QRGHTGERPYECSDCEKSFSWKSSLLRHQRVHTGGE-KPYECGECGKSFRQSSSLIQH-R 436

Query:   202 SIHLGVRI-KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSV 259
              +H G R  +CD C K F++K NLI H    H G R ++C  C KSF++   L+ H +SV
Sbjct:   437 RVHTGARPHECDECGKLFSNKSNLIKHRR-IHTGERPYECSECGKSFSESSALLQH-RSV 494

Query:   260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQ 317
             H G + Y+C EC K F    +L+ H Q +H G + Y C  C KS+ Q ++L+ H   VH 
Sbjct:   495 HTGERPYECSECGKFFTYHSSLIKH-QRVHSGSRPYECNECGKSFTQNSSLIEHRR-VHS 552

Query:   318 AQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVREAHPG 374
              ++ YKC++CG+ F+Q   L  H   VH+G R   C  CG F     +L  H R  H G
Sbjct:   553 GERPYKCSECGKSFSQSSALLQHR-RVHTGERPYECNECGKFFTYSSSLLKHQR-VHTG 609

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1N5B8 F1N5B8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.4e-34, P = 1.4e-34
 Identities = 96/237 (40%), Positives = 128/237 (54%)

Query:   157 EKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCD 215
             +K F+  S    GH+       K + CD+CGK+F +K  L  H  ++H G +  KCD CD
Sbjct:   696 DKVFRR-SKQLAGHQSVHSGE-KPYKCDECGKAFRVKSTLLRH-QTVHTGEKPYKCDECD 752

Query:   216 KTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKT 273
             K F  K  L++H  + H G + +KCD C K+F  KP L+ H ++VH G K YKC+EC K 
Sbjct:   753 KAFRVKSMLLSHQ-TVHTGEKPYKCDECGKAFRVKPILLRH-QTVHTGEKPYKCDECGKV 810

Query:   274 FAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFA 331
             F  K  LLSH Q IH G K Y C+ C K++   ++LL H T VH  +K YKC +CG+ F 
Sbjct:   811 FRVKSFLLSH-QTIHTGQKPYKCDECGKAFRVKSSLLRHQT-VHTGEKPYKCDECGKAFT 868

Query:   332 QEHTLRTHTLSVHSGVR-LTCRT-CGLFCDSKRALTAHVREAHPGCE-YKKRGRGRP 385
                 LR H  SVHSG +   C   C  F    + L+ H R  H G + Y      RP
Sbjct:   869 DRSQLRRHQ-SVHSGEKPYKCNEYCKHFSQPSQFLS-HKR-LHTGEKPYNVMNVARP 922

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A6NK75 ZNF98 "Zinc finger protein 98" [Homo sapiens (taxid:9606)]

 Score = 376 (137.4 bits), Expect = 2.0e-34, P = 2.0e-34
 Identities = 90/244 (36%), Positives = 126/244 (51%)

Query:   142 QIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVN 201
             +IG T    F   + EK+F   S      R   G   K + C +CGK++    NL+ H  
Sbjct:   173 KIGHTGKKSFKCKECEKSFCMLSHLAQHKRIHSGE--KPYKCKECGKAYNEASNLSTH-K 229

Query:   202 SIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSV 259
              IH G +  KC+ C K F    +L  H    H G + +KC+ C K+FNQ  NL +H K +
Sbjct:   230 RIHTGKKPYKCEECGKAFNRLSHLTTH-KIIHTGKKPYKCEECGKAFNQSANLTTH-KRI 287

Query:   260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQ 317
             H G K YKCEEC + F+Q   L +H + IH G K Y CE C K+++Q + L +H   +H 
Sbjct:   288 HTGEKPYKCEECGRAFSQSSTLTAH-KIIHAGEKPYKCEECGKAFSQSSTLTTHKI-IHT 345

Query:   318 AQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVREAHPGC 375
              +K YKC +CG+ F++   L TH   +HSG +   C  CG        LT H R  H G 
Sbjct:   346 GEKFYKCEECGKAFSRLSHLTTHK-RIHSGEKPYKCEECGKAFKQSSTLTTHKR-IHAGE 403

Query:   376 EYKK 379
             ++ K
Sbjct:   404 KFYK 407

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G3V1K9 ZNF782 "Zinc finger protein 782" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 3.1e-34, P = 3.1e-34
 Identities = 88/230 (38%), Positives = 123/230 (53%)

Query:   151 FNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-I 209
             F  ++  K+F + S      R   G   + + CD+CGK+F LK  L  H +  H G +  
Sbjct:   346 FECNECGKSFSHMSGLRNHRRTHTGE--RPYKCDECGKAFKLKSGLRKH-HRTHTGEKPY 402

Query:   210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
             KC+ C K F  K  L  H +  H G + +KC+HC ++F+QK NL  H ++ H G K Y+C
Sbjct:   403 KCNQCGKAFGQKSQLRGH-HRIHTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQC 460

Query:   268 EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCAD 325
             EEC KTF QK NL  H Q  H G K Y C  C K++++ + L  H  T H  +K Y C  
Sbjct:   461 EECGKTFRQKSNLRGH-QRTHTGEKPYECNECGKAFSEKSVLRKHQRT-HTGEKPYNCNQ 518

Query:   326 CGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVREAHPG 374
             CG  F+Q+  LR H  + H+G +   C  CG     K +L  H ++AHPG
Sbjct:   519 CGEAFSQKSNLRVHQRT-HTGEKPYKCDKCGRTFSQKSSLREH-QKAHPG 566

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9P255 ZNF492 "Zinc finger protein 492" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 89/240 (37%), Positives = 123/240 (51%)

Query:   146 TAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL 205
             T    F   + EK+F   S      R   G   K + C +CGK++    NL+ H   IH 
Sbjct:   136 TGKKSFKCKECEKSFCMLSHLAQHKRIHSGE--KPYKCKECGKAYNETSNLSTH-KRIHT 192

Query:   206 GVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGI 263
             G +  KC+ C K F    +L  H    H G + +KC+ C K+FNQ  NL +H K +H G 
Sbjct:   193 GKKPYKCEECGKAFNRLSHLTTH-KIIHTGKKPYKCEECGKAFNQSANLTTH-KRIHTGE 250

Query:   264 K-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK- 320
             K YKCEEC + F+Q   L +H + IH G K Y CE C K+++Q + L +H   +H  +K 
Sbjct:   251 KPYKCEECGRAFSQSSTLTAH-KIIHAGEKPYKCEECGKAFSQSSTLTTHKI-IHTGEKF 308

Query:   321 YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVREAHPGCEYKK 379
             YKC +CG+ F+Q   L TH   +HSG +   C  CG        LT H R  H G ++ K
Sbjct:   309 YKCEECGKAFSQLSHLTTHK-RIHSGEKPYKCEECGKAFKQSSTLTTHKR-IHAGEKFYK 366

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	458
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 9    PSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEKFEILKSISASFTPGY 68
            P P P    R      P        +P+G V   +    +    +  + +       P  
Sbjct: 2929 PQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG--RVAVPRFRVPQPAPSR 2986

Query: 69   GGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKTEPN-----QTNHPPSETEDS 123
                 +TPPL  H L  S +   A  L +H        +T+P      QT  PP +TEDS
Sbjct: 2987 EAPASSTPPLTGHSL--SRVSSWASSLALH-------EETDPPPVSLKQTLWPPDDTEDS 3037

Query: 124  DD 125
            D 
Sbjct: 3038 DA 3039

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG1074|consensus	958		99.94
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.94
KOG1074|consensus	958		99.92
KOG3608|consensus	467		99.9
KOG3608|consensus	467		99.89
KOG3623|consensus	1007		99.89
KOG3623|consensus	1007		99.85
KOG3576|consensus	267		99.72
KOG3576|consensus	267		99.65
PLN03086	567	PRLI-interacting factor K; Provisional	99.38
PLN03086	567	PRLI-interacting factor K; Provisional	99.38
KOG3993|consensus	500		99.14
PF01352	41	KRAB: KRAB box; InterPro: IPR001909 The Krueppel-a	99.12
PHA00733	128	hypothetical protein	99.06
KOG3993|consensus	500		99.01
PHA00733	128	hypothetical protein	98.98
PHA02768	55	hypothetical protein; Provisional	98.75
PHA02768	55	hypothetical protein; Provisional	98.69
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.35
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.29
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	98.15
PHA00732	79	hypothetical protein	98.12
PHA00616	44	hypothetical protein	98.11
PHA00616	44	hypothetical protein	98.06
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.03
PHA00732	79	hypothetical protein	97.99
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.92
KOG2231|consensus	669		97.64
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	97.61
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.55
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.47
KOG1146|consensus	1406		97.46
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.4
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.31
KOG2231|consensus	669		97.26
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.11
KOG1146|consensus	1406		97.03
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.96
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.88
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.61
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.56
KOG2482|consensus	423		96.5
KOG2785|consensus	390		96.24
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.1
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.1
smart00355	26	ZnF_C2H2 zinc finger.	96.08
COG5048	467	FOG: Zn-finger [General function prediction only]	95.98
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.95
KOG2482|consensus	423		95.92
smart00355	26	ZnF_C2H2 zinc finger.	95.88
KOG2785|consensus	390		95.64
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.64
COG5048	467	FOG: Zn-finger [General function prediction only]	95.63
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.61
PRK04860	160	hypothetical protein; Provisional	95.19
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.97
PRK04860	160	hypothetical protein; Provisional	94.86
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.38
KOG4173|consensus	253		94.16
KOG2893|consensus	341		94.14
KOG4173|consensus	253		93.06
cd07765	40	KRAB_A-box KRAB (Kruppel-associated box) domain -A	93.06
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.47
KOG2893|consensus	341		92.47
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	91.78
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.15
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.9
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.37
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.49
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	89.29
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.01
COG4049	65	Uncharacterized protein containing archaeal-type C	87.64
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	87.21
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.98
COG4049	65	Uncharacterized protein containing archaeal-type C	85.52
KOG2186|consensus	276		85.01
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.21
KOG0943|consensus	3015		81.96
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.78
KOG1832|consensus	1516		80.73

>KOG1074|consensus

Probab=99.94  E-value=1.6e-28  Score=245.40  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             ccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCccc
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKK  379 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~  379 (458)
                      ..|..|++.|...+.|..|+++|.+.++|.|.+|++.|..+.+|+.||.+|+...+...
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~sr  938 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSR  938 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCcc
Confidence            67999999999999999999999999999999999999999999999999987655443

>KOG2462|consensus

Probab=99.94  E-value=1.8e-27  Score=211.64  Aligned_cols=133  Identities=26%  Similarity=0.555  Sum_probs=105.2

Q ss_pred             eecCccccccCCchhhhhccchhcc---CcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHh
Q psy2838         237 FKCDHCVKSFNQKPNLISHIKSVHE---GIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMT  313 (458)
Q Consensus       237 ~~C~~C~~~f~~~~~L~~H~~~~~~---~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~  313 (458)
                      |+|+.|++.+.+.++|.+|..+|..   .+.+.|.+|+|.|.+...|+.|+++|.  .++.|.+|||.|.+...|+.|+|
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR  208 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR  208 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence            5555555555555555555554432   366888888888888888888886654  45888889999988888999999


Q ss_pred             hhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHh
Q psy2838         314 TVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      +|+|+|||.|+.|++.|..+++|+.||++|...++|+|..|+|.|..++.|.+|....
T Consensus       209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             cccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999998888888888999999999999999987643

>KOG2462|consensus

Probab=99.94  E-value=1.9e-27  Score=211.38  Aligned_cols=135  Identities=27%  Similarity=0.564  Sum_probs=121.4

Q ss_pred             CCcccccccccccCCHHHHHHHHHhhcC---CCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhh
Q psy2838         178 VKKFPCDQCGKSFTLKQNLTYHVNSIHL---GVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLIS  254 (458)
Q Consensus       178 ~k~~~C~~C~~~f~~~~~L~~H~~~~h~---~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  254 (458)
                      ...|+|..|++.|.+.++|.+|.+.|-.   .+.+.|++|+|.|.+...|+.|+++|.  .+++|.+|||.|...+.|+-
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence            4579999999999999999999986643   234899999999999999999999997  68999999999999999999


Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhh
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTT  314 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~  314 (458)
                      |+|+|+|+|||.|..|++.|..+++|+.||++|...++|+|..|+|+|...+.|.+|...
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999988888889999999999988888888764

>KOG1074|consensus

Probab=99.92  E-value=1.7e-26  Score=230.96  Aligned_cols=141  Identities=23%  Similarity=0.447  Sum_probs=125.8

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhccC----cceecC---cccccccCHHHHH
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEG----IKYKCE---ECTKTFAQKQNLL  281 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~----~~~~C~---~C~~~f~~~~~L~  281 (458)
                      -.|-+|.++....+.|+.|.++|+|++||+|.+|++.|.++.+|+.||-.|...    ..|.|+   +|.+.|.+.-.|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lp  685 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLP  685 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccccc
Confidence            469999999999999999999999999999999999999999999999865543    458899   9999999999999


Q ss_pred             HHHHHhhcCc----------------------------------------------------------------------
Q psy2838         282 SHVQAIHMGI----------------------------------------------------------------------  291 (458)
Q Consensus       282 ~H~~~~h~~~----------------------------------------------------------------------  291 (458)
                      .|++.|.++.                                                                      
T Consensus       686 QhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~~~  765 (958)
T KOG1074|consen  686 QHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSCGR  765 (958)
T ss_pred             ceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccccc
Confidence            9986654211                                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy2838         292 --------------------------------------------------------------------------------  291 (458)
Q Consensus       292 --------------------------------------------------------------------------------  291 (458)
                                                                                                      
T Consensus       766 ~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~  845 (958)
T KOG1074|consen  766 ELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKT  845 (958)
T ss_pred             ccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccccc
Confidence                                                                                            


Q ss_pred             ---------------------------------eeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHH
Q psy2838         292 ---------------------------------KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRT  338 (458)
Q Consensus       292 ---------------------------------~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  338 (458)
                                                       +..|.+|++.|...+.|..|+++|+++|||.|.+|++.|..+.+|+.
T Consensus       846 n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKv  925 (958)
T KOG1074|consen  846 NEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKV  925 (958)
T ss_pred             ccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhh
Confidence                                             26899999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCcc
Q psy2838         339 HTLSVHSGVRL  349 (458)
Q Consensus       339 H~~~~h~~~~~  349 (458)
                      ||.+|+-..++
T Consensus       926 HMgtH~w~q~~  936 (958)
T KOG1074|consen  926 HMGTHMWVQPP  936 (958)
T ss_pred             hhccccccCCC
Confidence            99988765543

>KOG3608|consensus

Probab=99.90  E-value=1.6e-24  Score=197.11  Aligned_cols=225  Identities=24%  Similarity=0.443  Sum_probs=188.8

Q ss_pred             cCcccchh--hhhhhhcCCcccccccc----------CCCCCCC-Cccccc--ccccccCCHHHHHHHHHhhcCCCcccc
Q psy2838         147 AGLEFNRS--QFEKTFQNYSMTTTGHR----------GGKGPPV-KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVRIKC  211 (458)
Q Consensus       147 ~~~~~~c~--~c~~~~~~~~~~~~~~~----------~~~~~~~-k~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C  211 (458)
                      .+..|.|.  .|+..|.+...+..|..          ......+ ..+.|.  .|-+.+.++..|+.|++.|.+++...|
T Consensus       131 ~g~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvAC  210 (467)
T KOG3608|consen  131 LGQNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVAC  210 (467)
T ss_pred             chhhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEec
Confidence            44556664  47777776544433311          1122222 236675  599999999999999998888888999


Q ss_pred             ccCccccCChHHHHHHHHHhc--CCceeecCccccccCCchhhhhccchhccCcceecCcccccccCHHHHHHHHHHhhc
Q psy2838         212 DFCDKTFAHKPNLIAHMNSAH--NGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHM  289 (458)
Q Consensus       212 ~~C~~~f~~~~~L~~H~~~h~--~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  289 (458)
                      +.||..|.++..|..|++..+  ...+|.|..|.+.|.+...|..|+..|.  .-|+|+.|..+....+.|.+|++..|.
T Consensus       211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs  288 (467)
T KOG3608|consen  211 PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHS  288 (467)
T ss_pred             chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhc
Confidence            999999999999999998654  4568999999999999999999998665  469999999999999999999987775


Q ss_pred             C-ceeecCccCcccCChhHHHHHHhhhccCccccCcc--ccccCCCHHHHHHHHhhccCC---CccccCcCcccCCCHHH
Q psy2838         290 G-IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRLFAQEHTLRTHTLSVHSG---VRLTCRTCGLFCDSKRA  363 (458)
Q Consensus       290 ~-~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~---~~~~C~~C~~~f~~~~~  363 (458)
                      . ++|+|..|++.|.+.+.|.+|...|. +..|+|..  |.++|++...|++|++.+|.+   .+|.|..|.+.|++-.+
T Consensus       289 ~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~  367 (467)
T KOG3608|consen  289 KDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKS  367 (467)
T ss_pred             cCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchh
Confidence            4 56999999999999999999999877 67799987  999999999999999999954   35889999999999999


Q ss_pred             HHHHHHHhCCC
Q psy2838         364 LTAHVREAHPG  374 (458)
Q Consensus       364 L~~H~~~~h~~  374 (458)
                      |.+|+++.|+-
T Consensus       368 L~~HL~kkH~f  378 (467)
T KOG3608|consen  368 LSAHLMKKHGF  378 (467)
T ss_pred             HHHHHHHhhcc
Confidence            99999999863

>KOG3608|consensus

Probab=99.89  E-value=1.3e-23  Score=191.25  Aligned_cols=208  Identities=25%  Similarity=0.487  Sum_probs=180.5

Q ss_pred             Cccccc--ccccccCCHHHHHHHHHhhcC------------CCc-cccc--cCccccCChHHHHHHHHHhcCCceeecCc
Q psy2838         179 KKFPCD--QCGKSFTLKQNLTYHVNSIHL------------GVR-IKCD--FCDKTFAHKPNLIAHMNSAHNGVRFKCDH  241 (458)
Q Consensus       179 k~~~C~--~C~~~f~~~~~L~~H~~~~h~------------~~~-~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  241 (458)
                      ..|.|.  .|+..|.+...|..|+..|..            +++ +.|.  .|-+.|.++..|+.|++.|.+++...|+.
T Consensus       133 ~~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~  212 (467)
T KOG3608|consen  133 QNFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH  212 (467)
T ss_pred             hhhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch
Confidence            347785  599999999999999874432            112 5665  49999999999999999999999999999


Q ss_pred             cccccCCchhhhhccchhcc--CcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhh-hccC
Q psy2838         242 CVKSFNQKPNLISHIKSVHE--GIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTT-VHQA  318 (458)
Q Consensus       242 C~~~f~~~~~L~~H~~~~~~--~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~  318 (458)
                      |+..|.++..|..|++..+.  ..+|.|..|.|.|.+...|..|+..|-.  -|+|+.|+.+....++|..|++. |...
T Consensus       213 Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~d  290 (467)
T KOG3608|consen  213 CGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKD  290 (467)
T ss_pred             HHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccC
Confidence            99999999999999986553  3689999999999999999999865543  49999999999999999999986 4568


Q ss_pred             ccccCccccccCCCHHHHHHHHhhccCCCccccCc--CcccCCCHHHHHHHHHHhCCC---CCcccCCCCCCCCcC
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRT--CGLFCDSKRALTAHVREAHPG---CEYKKRGRGRPKLEV  389 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~---~~~~~~~~~~~~~~~  389 (458)
                      +||+|..|++.|.+.++|.+|.. .|++..|.|..  |.++|.+...|++|++.+|.+   .+|.|-.|.+.....
T Consensus       291 kpfKCd~Cd~~c~~esdL~kH~~-~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G  365 (467)
T KOG3608|consen  291 KPFKCDECDTRCVRESDLAKHVQ-VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSG  365 (467)
T ss_pred             CCccccchhhhhccHHHHHHHHH-hccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccc
Confidence            99999999999999999999976 67788899988  999999999999999999943   579999998766443

>KOG3623|consensus

Probab=99.89  E-value=3.4e-24  Score=210.90  Aligned_cols=109  Identities=19%  Similarity=0.382  Sum_probs=92.2

Q ss_pred             cccchhhhhhhhcCCccccccccCCCCCCCCcccccccccccCCHHHHHHHHHhhcC-------------CCccccccCc
Q psy2838         149 LEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL-------------GVRIKCDFCD  215 (458)
Q Consensus       149 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~-------------~~~~~C~~C~  215 (458)
                      ....|.+|...+.....+..|........+..|.|..|..+|.....|.+||..|..             .++|+|..|+
T Consensus       209 qlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECg  288 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECG  288 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccc
Confidence            456788998887776666666543444456679999999999999999999986543             2459999999


Q ss_pred             cccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccc
Q psy2838         216 KTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       216 ~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      |.|..+..|+.|+|+|.|++||.|+.|+|.|+...++..||.
T Consensus       289 KAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  289 KAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            999999999999999999999999999999999999999974

>KOG3623|consensus

Probab=99.85  E-value=2.6e-22  Score=197.80  Aligned_cols=105  Identities=28%  Similarity=0.577  Sum_probs=96.2

Q ss_pred             cccccccccccCCHHHHHHHHHhhcCCC--ccccccCccccCChHHHHHHHHHhcCC-------------ceeecCcccc
Q psy2838         180 KFPCDQCGKSFTLKQNLTYHVNSIHLGV--RIKCDFCDKTFAHKPNLIAHMNSAHNG-------------VRFKCDHCVK  244 (458)
Q Consensus       180 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~--~~~C~~C~~~f~~~~~L~~H~~~h~~~-------------~~~~C~~C~~  244 (458)
                      ...|++|.+.+.....|+.|++..|...  .|.|..|.++|..+..|.+||.+|...             +.|+|..|+|
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK  289 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK  289 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence            4789999999999999999998766543  399999999999999999999998642             4599999999


Q ss_pred             ccCCchhhhhccchhccCcceecCcccccccCHHHHHHHH
Q psy2838         245 SFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       245 ~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      .|.-+..|+.|+|+|.|+|||.|+.|+|.|.....+..||
T Consensus       290 AFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm  329 (1007)
T KOG3623|consen  290 AFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM  329 (1007)
T ss_pred             hhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence            9999999999999999999999999999999999998887

>KOG3576|consensus

Probab=99.72  E-value=2.1e-18  Score=145.83  Aligned_cols=115  Identities=25%  Similarity=0.493  Sum_probs=100.4

Q ss_pred             CcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHh
Q psy2838         262 GIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       262 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      ...|.|.+|+|.|.-...|.+|++-|..-++|.|..||+.|.....|++|+++|++.+||+|..|++.|+++-+|..|++
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            45688888888888888888888766666678999999999999999999999999999999999999999999999999


Q ss_pred             hccCC-----------CccccCcCcccCCCHHHHHHHHHHhCCCCC
Q psy2838         342 SVHSG-----------VRLTCRTCGLFCDSKRALTAHVREAHPGCE  376 (458)
Q Consensus       342 ~~h~~-----------~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~  376 (458)
                      ++|+.           +-|.|..||++-.....+..|++.||+.-+
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            98874           236799999999999999999999998644

>KOG3576|consensus

Probab=99.65  E-value=3.1e-17  Score=138.81  Aligned_cols=86  Identities=34%  Similarity=0.586  Sum_probs=61.7

Q ss_pred             CCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhcc
Q psy2838         177 PVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHI  256 (458)
Q Consensus       177 ~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  256 (458)
                      +...|.|.+|+|.|.....|.+|++-|..-+++-|..||+.|.....|++|+++|++.+||+|..|++.|.++-+|..|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl  193 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHL  193 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHH
Confidence            34567777777777777777777775444455777777777777777777777777777777777777777777777777


Q ss_pred             chhccC
Q psy2838         257 KSVHEG  262 (458)
Q Consensus       257 ~~~~~~  262 (458)
                      +..|+.
T Consensus       194 ~kvhgv  199 (267)
T KOG3576|consen  194 KKVHGV  199 (267)
T ss_pred             HHHcCc
Confidence            666653

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.38  E-value=1.7e-12  Score=130.41  Aligned_cols=146  Identities=18%  Similarity=0.432  Sum_probs=115.2

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCc--cccccCCchhhhhccchhccCcceecCcccccccCHHHHHHHHHH
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDH--CVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQA  286 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~  286 (458)
                      ..|+.|..... ...|..|.... ......|+.  |+..|. +..+..|         +.|+.|++.|. ...|..|+..
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~~  474 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEAYC-SRHNVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMKV  474 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHhhC-CCcceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHHh
Confidence            57999988754 55777888543 335567885  999883 4445555         48999999996 6789999987


Q ss_pred             hhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCC----------CHHHHHHHHhhccCCCccccCcCcc
Q psy2838         287 IHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFA----------QEHTLRTHTLSVHSGVRLTCRTCGL  356 (458)
Q Consensus       287 ~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~----------~~~~L~~H~~~~h~~~~~~C~~C~~  356 (458)
                      +|  .++.|+ |++.+ .+..|..|+.+|.+.+++.|..|++.|.          ....|..|... ++.+.+.|..|++
T Consensus       475 ~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~Cgk  549 (567)
T PLN03086        475 FH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRTAPCDSCGR  549 (567)
T ss_pred             cC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh-cCCcceEccccCC
Confidence            76  679999 99755 6689999999999999999999999985          24589999655 6888889999999


Q ss_pred             cCCCHHHHHHHHHHhCC
Q psy2838         357 FCDSKRALTAHVREAHP  373 (458)
Q Consensus       357 ~f~~~~~L~~H~~~~h~  373 (458)
                      .+..+ .|..|+...|.
T Consensus       550 ~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        550 SVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             eeeeh-hHHHHHHHhhc
Confidence            98655 58999988875

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.38  E-value=6.2e-13  Score=133.53  Aligned_cols=148  Identities=18%  Similarity=0.475  Sum_probs=119.3

Q ss_pred             CcccccccccccCCHHHHHHHHHhhcCCCcccccc--CccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhcc
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDF--CDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHI  256 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~  256 (458)
                      ..-.|..|..... ..+|..|.. +.......|+.  |+..|. +..+..|         +.|+.|++.|. ...|..|+
T Consensus       406 ~~V~C~NC~~~i~-l~~l~lHe~-~C~r~~V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~  472 (567)
T PLN03086        406 DTVECRNCKHYIP-SRSIALHEA-YCSRHNVVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHM  472 (567)
T ss_pred             CeEECCCCCCccc-hhHHHHHHh-hCCCcceeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHH
Confidence            3457999988764 556778986 45555578985  999884 3444444         58999999996 67899999


Q ss_pred             chhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccC----------ChhHHHHHHhhhccCccccCccc
Q psy2838         257 KSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYN----------QVTNLLSHMTTVHQAQKYKCADC  326 (458)
Q Consensus       257 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~----------~~~~L~~H~~~h~~~~~~~C~~C  326 (458)
                      +.+|  +++.|+ |++.+ .+..|..|+..+...+++.|..|++.|.          ..+.|..|..+. +.+++.|..|
T Consensus       473 ~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~C  547 (567)
T PLN03086        473 KVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSC  547 (567)
T ss_pred             HhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcccc
Confidence            9876  789999 99765 6789999998888888899999999995          245899999885 8999999999


Q ss_pred             cccCCCHHHHHHHHhhccC
Q psy2838         327 GRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       327 ~~~f~~~~~L~~H~~~~h~  345 (458)
                      |+.|..+ .|..|+...|.
T Consensus       548 gk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        548 GRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             CCeeeeh-hHHHHHHHhhc
Confidence            9988776 68899888775

>KOG3993|consensus

Probab=99.14  E-value=5.2e-12  Score=118.71  Aligned_cols=195  Identities=16%  Similarity=0.185  Sum_probs=115.0

Q ss_pred             cccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeec---CccccccCCchhhhhcc
Q psy2838         180 KFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC---DHCVKSFNQKPNLISHI  256 (458)
Q Consensus       180 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C---~~C~~~f~~~~~L~~H~  256 (458)
                      .|.|..|...|.+...|.+|.-..-...-|+|+.|+|.|....+|..|.|.|....--.=   +-=.+...+....+.--
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            478888888888888888775432222347788888888888888888777753211000   00000000000000000


Q ss_pred             ch--hccCcceecCcccccccCHHHHHHHHHHhhcCce-----------------eecCccCcccCChhHHHHHHhhhcc
Q psy2838         257 KS--VHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-----------------YTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       257 ~~--~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~-----------------~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      +.  ......|.|.+|+|.|.+...|+.|+..|+....                 +.|..|.-.+.....--.+...+.+
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~  426 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAG  426 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeec
Confidence            00  0112368888888888888888888766664221                 3445555444433322222222221


Q ss_pred             -CccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         318 -AQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       318 -~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                       .....|+.|+-.+.++..--.|.+.-+....|.|.+|.-.|.+...|.+|+.+.|+.
T Consensus       427 sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  427 SAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             cccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence             122457788877777665555554455556688999999999999999999999974

>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []

Probab=99.12  E-value=1.2e-12  Score=83.84  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=21.4

Q ss_pred             ceeeecchhHHHHHHHhcCCCcCCCCCCCCC-CCCCC
Q psy2838          43 YNYYQLSSDEKFEILKSISASFTPGYGGFLP-NTPPL   78 (458)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~   78 (458)
                      |+|+||||+||+|||++|+|+||.+|++++. ++..+
T Consensus         1 Vtf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~Eny~~l   37 (41)
T PF01352_consen    1 VTFEDVAVYFSQEEWELLDPAQKNLYRDVMLENYRNL   37 (41)
T ss_dssp             ------TT---HHHHHTS-HHHHHHHHHHHHHTTTS-
T ss_pred             CeEEEEEEEcChhhcccccceecccchhHHHHhhccc
Confidence            7999999999999999999999999999953 44333

It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.

>PHA00733 hypothetical protein

Probab=99.06  E-value=1.7e-10  Score=94.94  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             eeecCccCcccCChhHHH------HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHH
Q psy2838         292 KYTCEVCSKSYNQVTNLL------SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALT  365 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~------~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~  365 (458)
                      ++.|.+|.+.|.+...|.      +|+. +++.++|.|+.|++.|.+...|..|++.+  ..+|.|..|++.|.....|.
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~  116 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTL  116 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHH
Confidence            355555555555544433      3433 34578899999999999999999997653  34688999999999999999


Q ss_pred             HHHHHhCCC
Q psy2838         366 AHVREAHPG  374 (458)
Q Consensus       366 ~H~~~~h~~  374 (458)
                      .|++.+|+.
T Consensus       117 ~H~~~~h~~  125 (128)
T PHA00733        117 DHVCKKHNI  125 (128)
T ss_pred             HHHHHhcCc
Confidence            999988864

>KOG3993|consensus

Probab=99.01  E-value=1.9e-11  Score=114.93  Aligned_cols=192  Identities=13%  Similarity=0.111  Sum_probs=115.9

Q ss_pred             ccchhhhhhhhcCCccccccccCCCCCCCCcccccccccccCCHHHHHHHHHhhcCCCcccccc----CccccCChHHHH
Q psy2838         150 EFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDF----CDKTFAHKPNLI  225 (458)
Q Consensus       150 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~----C~~~f~~~~~L~  225 (458)
                      .|.|..|...|.+...|..|.-.+.  -.-.|+|+.|+|+|....+|..|.|. |..++-.=.-    =.+...+. .+.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RI--V~vEYrCPEC~KVFsCPANLASHRRW-HKPR~eaa~a~~~P~k~~~~~r-ae~  342 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRI--VHVEYRCPECDKVFSCPANLASHRRW-HKPRPEAAKAGSPPPKQAVETR-AEV  342 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCee--EEeeecCCcccccccCchhhhhhhcc-cCCchhhhhcCCCChhhhhhhh-hhh
Confidence            6889999999998888877642111  12359999999999999999999984 4433211000    00000000 111


Q ss_pred             HHH-HH--hcCCceeecCccccccCCchhhhhccchhccCcc-----------------eecCcccccccCHHHHHHHHH
Q psy2838         226 AHM-NS--AHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-----------------YKCEECTKTFAQKQNLLSHVQ  285 (458)
Q Consensus       226 ~H~-~~--h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~-----------------~~C~~C~~~f~~~~~L~~H~~  285 (458)
                      +-. +.  -.....|.|.+|++.|.....|+.|+.+|+....                 +-|..|.-.+.....--.+..
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl  422 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVL  422 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccccee
Confidence            000 00  0112358888888888888888888776664311                 223333333322111111110


Q ss_pred             Hhh-cCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccC
Q psy2838         286 AIH-MGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       286 ~~h-~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      .+. ......|++|+..+.++..--.|.+.-+.+..|.|.+|.-.|.+...|.+|+...|.
T Consensus       423 ~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  423 YVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             eeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence            000 011256888888887776666666666677789999999999999999999887775

>PHA00733 hypothetical protein

Probab=98.98  E-value=3.5e-10  Score=93.18  Aligned_cols=81  Identities=16%  Similarity=0.283  Sum_probs=58.1

Q ss_pred             cceecCcccccccCHHHHHHH--H---HHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHH
Q psy2838         263 IKYKCEECTKTFAQKQNLLSH--V---QAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLR  337 (458)
Q Consensus       263 ~~~~C~~C~~~f~~~~~L~~H--~---~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  337 (458)
                      +++.|.+|.+.|.....|..|  +   ..++...+|.|+.|++.|.+...|..|++.|  ..+|.|..|++.|.....|.
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~  116 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTL  116 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHH
Confidence            556666666666655555444  1   1234456688888888888888888888865  34688888888888888888


Q ss_pred             HHHhhccC
Q psy2838         338 THTLSVHS  345 (458)
Q Consensus       338 ~H~~~~h~  345 (458)
                      +|+...|+
T Consensus       117 ~H~~~~h~  124 (128)
T PHA00733        117 DHVCKKHN  124 (128)
T ss_pred             HHHHHhcC
Confidence            88887775

>PHA02768 hypothetical protein; Provisional

Probab=98.75  E-value=3.2e-09  Score=71.78  Aligned_cols=42  Identities=19%  Similarity=0.581  Sum_probs=26.0

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHH
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTL  336 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L  336 (458)
                      |.|+.||+.|...++|..|+++|+  ++|+|..|++.|.+.+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            566666666666666666666665  456666666666655544

>PHA02768 hypothetical protein; Provisional

Probab=98.69  E-value=9.2e-09  Score=69.58  Aligned_cols=43  Identities=16%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhh
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLI  253 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  253 (458)
                      |.|+.||+.|...++|..|+++|+  ++|+|..|++.|...+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            677777777777777777777776  4677777777777666553

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.35  E-value=2e-07  Score=53.83  Aligned_cols=26  Identities=42%  Similarity=0.809  Sum_probs=19.9

Q ss_pred             HHHHHHhhhccCccccCccccccCCC
Q psy2838         307 NLLSHMTTVHQAQKYKCADCGRLFAQ  332 (458)
Q Consensus       307 ~L~~H~~~h~~~~~~~C~~C~~~f~~  332 (458)
                      +|.+|+++|++++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            46778888888888888888887753

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.29  E-value=5.7e-07  Score=51.89  Aligned_cols=25  Identities=40%  Similarity=0.683  Sum_probs=18.4

Q ss_pred             HHHHHHHHhcCCceeecCccccccC
Q psy2838         223 NLIAHMNSAHNGVRFKCDHCVKSFN  247 (458)
Q Consensus       223 ~L~~H~~~h~~~~~~~C~~C~~~f~  247 (458)
                      +|.+|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4677777777777777777777775

...

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=98.15  E-value=2.6e-06  Score=75.71  Aligned_cols=95  Identities=21%  Similarity=0.557  Sum_probs=53.1

Q ss_pred             hccCcceecCcccccccCHHHHHHHHHHhh--cCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHH
Q psy2838         259 VHEGIKYKCEECTKTFAQKQNLLSHVQAIH--MGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTL  336 (458)
Q Consensus       259 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h--~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L  336 (458)
                      .|+.+.|+|..|....-.- .-..|+....  ....|+|.-|++.                 -.|.|-.|...|-.-...
T Consensus       137 ~hGGrif~CsfC~~flCED-DQFEHQAsCQvLe~E~~KC~SCNrl-----------------Gq~sCLRCK~cfCddHvr  198 (314)
T PF06524_consen  137 DHGGRIFKCSFCDNFLCED-DQFEHQASCQVLESETFKCQSCNRL-----------------GQYSCLRCKICFCDDHVR  198 (314)
T ss_pred             cCCCeEEEeecCCCeeecc-chhhhhhhhhhhhcccccccccccc-----------------cchhhhheeeeehhhhhh
Confidence            4666777777776533322 2223432221  2233777766642                 124555555555443322


Q ss_pred             HHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         337 RTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       337 ~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      ++- .+.-.++++.|+.|++.......|..-.|+|-
T Consensus       199 rKg-~ky~k~k~~PCPKCg~et~eTkdLSmStR~hk  233 (314)
T PF06524_consen  199 RKG-FKYEKGKPIPCPKCGYETQETKDLSMSTRSHK  233 (314)
T ss_pred             hcc-cccccCCCCCCCCCCCcccccccceeeeecch
Confidence            222 22334567889999999888888887777664

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PHA00732 hypothetical protein

Probab=98.12  E-value=1.6e-06  Score=64.73  Aligned_cols=45  Identities=24%  Similarity=0.524  Sum_probs=29.5

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      |.|..|++.|.+...|..|++.+|.  ++.|+.|++.|.   .|..|+++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhcc
Confidence            5677777777777777777764322  256777777776   36667543

>PHA00616 hypothetical protein

Probab=98.11  E-value=1.5e-06  Score=56.00  Aligned_cols=31  Identities=19%  Similarity=0.405  Sum_probs=16.3

Q ss_pred             cccCcCcccCCCHHHHHHHHHHhCCCCCccc
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREAHPGCEYKK  379 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~  379 (458)
                      |+|+.||+.|..++.|.+|+++||+..++.|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            4455555555555555555555555544443

>PHA00616 hypothetical protein

Probab=98.06  E-value=1.6e-06  Score=55.75  Aligned_cols=32  Identities=22%  Similarity=0.591  Sum_probs=16.5

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCA  324 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  324 (458)
                      |+|+.||+.|...+.|..|++.||+++++.|.
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            44555555555555555555555555555443

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.03  E-value=7.6e-06  Score=56.61  Aligned_cols=51  Identities=24%  Similarity=0.486  Sum_probs=35.1

Q ss_pred             cccCccccccCCCHHHHHHHHhhccCCC--ccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLSVHSGV--RLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~--~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      .|.|+.|++ ..+...|..|....|...  .+.|++|...+.  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            377888888 455667888877766643  356888877644  378888887763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=97.99  E-value=4.4e-06  Score=62.33  Aligned_cols=44  Identities=32%  Similarity=0.499  Sum_probs=21.7

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccc
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      |.|..|++.|.+...|..|++.+|.  ++.|+.|++.|.   .|..|++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhc
Confidence            4455555555555555555543221  235555555554   3555554

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.92  E-value=1.7e-05  Score=54.91  Aligned_cols=50  Identities=34%  Similarity=0.640  Sum_probs=32.5

Q ss_pred             cccccccccccCCHHHHHHHHHhhcCCC--ccccccCccccCChHHHHHHHHHhc
Q psy2838         180 KFPCDQCGKSFTLKQNLTYHVNSIHLGV--RIKCDFCDKTFAHKPNLIAHMNSAH  232 (458)
Q Consensus       180 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~--~~~C~~C~~~f~~~~~L~~H~~~h~  232 (458)
                      .|.|++|++ ..+...|..|+...|...  .+.|++|...+.  .+|..|+..+|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            367777777 445667777776666543  377777776543  37777776665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG2231|consensus

Probab=97.64  E-value=0.00023  Score=73.21  Aligned_cols=48  Identities=21%  Similarity=0.415  Sum_probs=31.2

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccc------cccCCCHHHHHHHHhhcc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADC------GRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C------~~~f~~~~~L~~H~~~~h  344 (458)
                      -.|..|...|.....|.+|++.+|    |.|..|      +..|.....|..|.+..|
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            456777777777777777776655    445555      345666677777776666

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=97.61  E-value=0.00012  Score=65.46  Aligned_cols=85  Identities=21%  Similarity=0.393  Sum_probs=48.6

Q ss_pred             HhhcCceeecCccCcccCChhHHHHHHhhh--ccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHH
Q psy2838         286 AIHMGIKYTCEVCSKSYNQVTNLLSHMTTV--HQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRA  363 (458)
Q Consensus       286 ~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h--~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~  363 (458)
                      ..|+++.|+|.+|....-.-. --.|+.+-  .....|+|.-|++.                 ..|.|-.|...|-    
T Consensus       136 w~hGGrif~CsfC~~flCEDD-QFEHQAsCQvLe~E~~KC~SCNrl-----------------Gq~sCLRCK~cfC----  193 (314)
T PF06524_consen  136 WDHGGRIFKCSFCDNFLCEDD-QFEHQASCQVLESETFKCQSCNRL-----------------GQYSCLRCKICFC----  193 (314)
T ss_pred             ccCCCeEEEeecCCCeeeccc-hhhhhhhhhhhhcccccccccccc-----------------cchhhhheeeeeh----
Confidence            357788888888875443322 23454432  12345888888752                 1233444544453    


Q ss_pred             HHHHHHHh----CCCCCcccCCCCCCCCcCCCCC
Q psy2838         364 LTAHVREA----HPGCEYKKRGRGRPKLEVPGGG  393 (458)
Q Consensus       364 L~~H~~~~----h~~~~~~~~~~~~~~~~~~~~~  393 (458)
                       ..|+|..    -.++++.|++|+-....+-..+
T Consensus       194 -ddHvrrKg~ky~k~k~~PCPKCg~et~eTkdLS  226 (314)
T PF06524_consen  194 -DDHVRRKGFKYEKGKPIPCPKCGYETQETKDLS  226 (314)
T ss_pred             -hhhhhhcccccccCCCCCCCCCCCcccccccce
Confidence             3455442    3457899999997765544433

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.55  E-value=4.8e-05  Score=60.07  Aligned_cols=74  Identities=24%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             ecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         294 TCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       294 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      +|.+|+..|.+...|..|+...|+...-    ....+.....+..++.. .....+.|..|++.|.+...|..||+.++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~-~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRK-KVKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             Cccccccccccccccccccccccccccc----ccccccccccccccccc-ccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            4777777777777777777666653211    11122233444444322 12225778888888888888888888753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.47  E-value=7.6e-05  Score=41.59  Aligned_cols=21  Identities=38%  Similarity=0.700  Sum_probs=11.4

Q ss_pred             ccCcCcccCCCHHHHHHHHHH
Q psy2838         350 TCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       350 ~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      .|+.|++.|.++..|.+|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHhH
Confidence            455555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG1146|consensus

Probab=97.46  E-value=1.2e-05  Score=86.94  Aligned_cols=49  Identities=16%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             ccCcccccc-CCCHHHHHHHHhhc------cCCCccccCcCcccCCCHHHHHHHHH
Q psy2838         321 YKCADCGRL-FAQEHTLRTHTLSV------HSGVRLTCRTCGLFCDSKRALTAHVR  369 (458)
Q Consensus       321 ~~C~~C~~~-f~~~~~L~~H~~~~------h~~~~~~C~~C~~~f~~~~~L~~H~~  369 (458)
                      |.|-.|+.- ..+...|+.|..+-      ..+..|.|.+|.+....+.++..|.+
T Consensus       735 ~~civcd~~st~~l~~l~~h~~~~rs~ke~v~g~~~~c~l~~y~t~~kanfqlh~K  790 (1406)
T KOG1146|consen  735 FDCIVCDVFSTDRLDQLWFHNTRERSRKEQVPGDVPSCKLKPYATNTKANFQLHNK  790 (1406)
T ss_pred             HHHhhhhhhhhhhHHHHhhcchhhhhhhhcccCCCCcceecccccccchhhhhhcc
Confidence            788888853 33445666674321      12345789999999888888877765

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.40  E-value=0.00012  Score=41.03  Aligned_cols=24  Identities=38%  Similarity=0.699  Sum_probs=12.4

Q ss_pred             cccCcCcccCCCHHHHHHHHHHhC
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      |.|++|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            345555555555555555555554

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.35  E-value=0.00014  Score=57.40  Aligned_cols=22  Identities=32%  Similarity=0.853  Sum_probs=10.7

Q ss_pred             ceecCcccccccCHHHHHHHHH
Q psy2838         264 KYKCEECTKTFAQKQNLLSHVQ  285 (458)
Q Consensus       264 ~~~C~~C~~~f~~~~~L~~H~~  285 (458)
                      .+.|..|++.|.+...|..|++
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMR   71 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHc
Confidence            3455555555555555555554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.33  E-value=0.00012  Score=41.03  Aligned_cols=23  Identities=30%  Similarity=0.756  Sum_probs=10.3

Q ss_pred             ccCccccccCCCHHHHHHHHhhc
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      |.|++|++.|.+...|+.|+.++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555554443

...

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.31  E-value=0.00034  Score=64.99  Aligned_cols=78  Identities=21%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccc-------cCCCHHHHHHHHhhccCCCccc-cCcC-cccCCCHHH
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGR-------LFAQEHTLRTHTLSVHSGVRLT-CRTC-GLFCDSKRA  363 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~-------~f~~~~~L~~H~~~~h~~~~~~-C~~C-~~~f~~~~~  363 (458)
                      -.|..|...|..-..|.+|++..|.    .|-+|++       -|.+..+|.+|.+..|---.++ |..= -+.|.....
T Consensus       221 P~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~e  296 (493)
T COG5236         221 PLCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTE  296 (493)
T ss_pred             chhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEeccHHH
Confidence            3577777777777777777776553    3555544       3677778888866554222222 2110 145777788


Q ss_pred             HHHHHHHhCCC
Q psy2838         364 LTAHVREAHPG  374 (458)
Q Consensus       364 L~~H~~~~h~~  374 (458)
                      |..|+...|+.
T Consensus       297 l~~h~~~~h~~  307 (493)
T COG5236         297 LLEHLTRFHKV  307 (493)
T ss_pred             HHHHHHHHhhc
Confidence            88888887764

>KOG2231|consensus

Probab=97.26  E-value=0.00041  Score=71.44  Aligned_cols=104  Identities=25%  Similarity=0.530  Sum_probs=63.1

Q ss_pred             ccccCccccCChHHHHHHHHHhcCCceeecCcccc---------ccCCchhhhhccchhcc-C----cceecCccccccc
Q psy2838         210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVK---------SFNQKPNLISHIKSVHE-G----IKYKCEECTKTFA  275 (458)
Q Consensus       210 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~---------~f~~~~~L~~H~~~~~~-~----~~~~C~~C~~~f~  275 (458)
                      .|..| ..|.....|+.|+..-|.  -+.|..|-.         ...+...|..|++.--. .    -.-.|..|...|.
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl  193 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL  193 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence            45555 555666777777754443  244444421         12234556666553221 1    1246888888888


Q ss_pred             CHHHHHHHHHHhhcCceeecCcc------CcccCChhHHHHHHhhhccCccccCc
Q psy2838         276 QKQNLLSHVQAIHMGIKYTCEVC------SKSYNQVTNLLSHMTTVHQAQKYKCA  324 (458)
Q Consensus       276 ~~~~L~~H~~~~h~~~~~~C~~C------~~~f~~~~~L~~H~~~h~~~~~~~C~  324 (458)
                      ....|.+|++..|    |.|.+|      +.-|.....|..|.+.+|    |.|.
T Consensus       194 d~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE  240 (669)
T KOG2231|consen  194 DDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCE  240 (669)
T ss_pred             cHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----cccc
Confidence            8888888886655    556666      344666778888888777    5665

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.11  E-value=0.00013  Score=66.92  Aligned_cols=23  Identities=22%  Similarity=0.678  Sum_probs=17.2

Q ss_pred             cCccccCccccccCCCHHHHHHH
Q psy2838         317 QAQKYKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       317 ~~~~~~C~~C~~~f~~~~~L~~H  339 (458)
                      ..|||+|++|+|+|.....|+-|
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYH  417 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYH  417 (423)
T ss_pred             cCCceeccccchhhccCccceec
Confidence            34677787788777777777777

>KOG1146|consensus

Probab=97.03  E-value=0.00071  Score=73.69  Aligned_cols=106  Identities=23%  Similarity=0.351  Sum_probs=76.4

Q ss_pred             hhhhhhhhcCCccccccccCCCCCCCCcccccccccccCCHHHHHHHHHhhcC-------------------------CC
Q psy2838         153 RSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL-------------------------GV  207 (458)
Q Consensus       153 c~~c~~~~~~~~~~~~~~~~~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~-------------------------~~  207 (458)
                      +..++..+...+.+..+.+ ..+.-.+.|+|+.|+..|+....|..|||..|.                         .+
T Consensus       439 ~~~~e~~~~s~r~~~~~t~-~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTV-VLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             ccchhhhhhhhccccccee-eeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            3444445544444333322 223334889999999999999999999997442                         34


Q ss_pred             ccccccCccccCChHHHHHHHHHhc--C-----------------------------------------CceeecCcccc
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMNSAH--N-----------------------------------------GVRFKCDHCVK  244 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~~h~--~-----------------------------------------~~~~~C~~C~~  244 (458)
                      +|.|..|...+..+.+|.+|+..-.  .                                         +-.+.|..|++
T Consensus       518 p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~y  597 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSY  597 (1406)
T ss_pred             cccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcc
Confidence            5889999999999999999986421  0                                         01288999999


Q ss_pred             ccCCchhhhhccchh
Q psy2838         245 SFNQKPNLISHIKSV  259 (458)
Q Consensus       245 ~f~~~~~L~~H~~~~  259 (458)
                      .-+-..+|+.|+..-
T Consensus       598 etniarnlrihmtss  612 (1406)
T KOG1146|consen  598 ETNIARNLRIHMTAS  612 (1406)
T ss_pred             hhhhhhccccccccC
Confidence            988889999998643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.97  E-value=0.0015  Score=60.94  Aligned_cols=128  Identities=24%  Similarity=0.474  Sum_probs=93.4

Q ss_pred             ccccc--CccccCChHHHHHHHHHhcCCceeecCccc---cccC------CchhhhhccchhccCcc----eecCccccc
Q psy2838         209 IKCDF--CDKTFAHKPNLIAHMNSAHNGVRFKCDHCV---KSFN------QKPNLISHIKSVHEGIK----YKCEECTKT  273 (458)
Q Consensus       209 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~---~~f~------~~~~L~~H~~~~~~~~~----~~C~~C~~~  273 (458)
                      |.|+.  |..+......|+.|.+..|+  .+.|.+|-   +.|.      ++..|..|...-..+.-    -.|..|...
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~--~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~  229 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG--FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY  229 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC--cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence            77875  77777778899999998876  37788875   3343      34556667543222222    369999999


Q ss_pred             ccCHHHHHHHHHHhhcCceeecCccCcc-------cCChhHHHHHHhhhccCccccCcc--cc----ccCCCHHHHHHHH
Q psy2838         274 FAQKQNLLSHVQAIHMGIKYTCEVCSKS-------YNQVTNLLSHMTTVHQAQKYKCAD--CG----RLFAQEHTLRTHT  340 (458)
Q Consensus       274 f~~~~~L~~H~~~~h~~~~~~C~~C~~~-------f~~~~~L~~H~~~h~~~~~~~C~~--C~----~~f~~~~~L~~H~  340 (458)
                      |-....|..|++..|.    .|-+|++.       |.+...|..|.+..|    |.|..  |-    ..|.....|..|+
T Consensus       230 FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~  301 (493)
T COG5236         230 FYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHL  301 (493)
T ss_pred             ecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHH
Confidence            9999999999987774    56677654       778889999987654    66643  42    3799999999999


Q ss_pred             hhccCC
Q psy2838         341 LSVHSG  346 (458)
Q Consensus       341 ~~~h~~  346 (458)
                      ...|+.
T Consensus       302 ~~~h~~  307 (493)
T COG5236         302 TRFHKV  307 (493)
T ss_pred             HHHhhc
Confidence            888764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.96  E-value=0.00042  Score=40.24  Aligned_cols=20  Identities=35%  Similarity=1.004  Sum_probs=8.1

Q ss_pred             ccCccccccCCCHHHHHHHH
Q psy2838         321 YKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~  340 (458)
                      |.|..|++.|.+...|..|+
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~   21 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHK   21 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHH
T ss_pred             CCCCccCCccCChhHHHHHh
Confidence            33444444444444444443

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.88  E-value=0.00058  Score=39.63  Aligned_cols=24  Identities=42%  Similarity=0.785  Sum_probs=14.3

Q ss_pred             cccccccccccCCHHHHHHHHHhh
Q psy2838         180 KFPCDQCGKSFTLKQNLTYHVNSI  203 (458)
Q Consensus       180 ~~~C~~C~~~f~~~~~L~~H~~~~  203 (458)
                      +|.|..|++.|.+...|..|++.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            355666666666666666666543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.61  E-value=0.0013  Score=36.94  Aligned_cols=24  Identities=29%  Similarity=0.686  Sum_probs=14.7

Q ss_pred             cccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      |+|+.|++... ...|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            45777777766 6677777776653

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.56  E-value=0.0011  Score=61.06  Aligned_cols=70  Identities=20%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             CCcccccc--cccccCCHHHHHHHHHhhcCCCc-cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhh
Q psy2838         178 VKKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLIS  254 (458)
Q Consensus       178 ~k~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  254 (458)
                      .|||+|++  |.|.|++...|+.|+..-|.... ..=+          .-..|.-.....+||+|..|+|.+.+...|+-
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhccCcccee
Confidence            47888876  88888888888888762221111 0000          00001111233467777777777777777776


Q ss_pred             ccc
Q psy2838         255 HIK  257 (458)
Q Consensus       255 H~~  257 (458)
                      |+.
T Consensus       417 Hr~  419 (423)
T COG5189         417 HRK  419 (423)
T ss_pred             ccc
Confidence            654

>KOG2482|consensus

Probab=96.50  E-value=0.0036  Score=58.37  Aligned_cols=51  Identities=24%  Similarity=0.337  Sum_probs=41.0

Q ss_pred             ccCccccccCCCHHHHHHHHhhccCC---------------------------CccccCcCcccCCCHHHHHHHHHHh
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSVHSG---------------------------VRLTCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~h~~---------------------------~~~~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      ..|-.|....-+...|..||...|.-                           ..-.|-.|.-.|.....|..||..+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            58999998888899999999887730                           0123899999999999999998754

>KOG2785|consensus

Probab=96.24  E-value=0.0073  Score=57.58  Aligned_cols=52  Identities=23%  Similarity=0.397  Sum_probs=41.2

Q ss_pred             cccCccccccCCCHHHHHHHHhhccC-----------------------CCccccCcCc---ccCCCHHHHHHHHHHh
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLSVHS-----------------------GVRLTCRTCG---LFCDSKRALTAHVREA  371 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~~h~-----------------------~~~~~C~~C~---~~f~~~~~L~~H~~~~  371 (458)
                      |-.|-.|++.+.+...-..||..+|+                       +.-+.|-.|+   +.|.+....+.||+..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            45678888888888888888877775                       1235699998   9999999999999864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.10  E-value=0.0042  Score=41.01  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=15.4

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCCCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHPGC  375 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~  375 (458)
                      +..|++|+..+....+|++|+...|..+
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhccc
Confidence            4456666666666666666666666543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.10  E-value=0.0029  Score=41.77  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=16.8

Q ss_pred             cCccccCccccccCCCHHHHHHHHhhccCCC
Q psy2838         317 QAQKYKCADCGRLFAQEHTLRTHTLSVHSGV  347 (458)
Q Consensus       317 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~  347 (458)
                      .+.|-.|++|+..+.+..+|++|+...|..+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            3456667777777777777777766666543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.08  E-value=0.0057  Score=34.60  Aligned_cols=23  Identities=39%  Similarity=0.713  Sum_probs=17.0

Q ss_pred             cccCcCcccCCCHHHHHHHHHHh
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            45777788887777788777754

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.98  E-value=0.0019  Score=65.27  Aligned_cols=144  Identities=22%  Similarity=0.317  Sum_probs=85.5

Q ss_pred             ccccccCccccCChHHHHHHHH--HhcCC--ceeecC--ccccccCCchhhhhccchhccCcceecCc--ccccccCHHH
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMN--SAHNG--VRFKCD--HCVKSFNQKPNLISHIKSVHEGIKYKCEE--CTKTFAQKQN  279 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~L~~H~~~~~~~~~~~C~~--C~~~f~~~~~  279 (458)
                      ++.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.....+..|...+....++.|..  |...+.....
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN  368 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccC
Confidence            4677777777777777777777  67777  778887  68888888888888877776666555544  3333332222


Q ss_pred             H-----HHHHHHhhcCceeecCc--cCcccCChhHHHHHHhhhccCc--cccCccccccCCCHHHHHHHHhhccCCCccc
Q psy2838         280 L-----LSHVQAIHMGIKYTCEV--CSKSYNQVTNLLSHMTTVHQAQ--KYKCADCGRLFAQEHTLRTHTLSVHSGVRLT  350 (458)
Q Consensus       280 L-----~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~  350 (458)
                      -     ............+.|..  |...+.....+..|...|....  .+.+..|.+.|.....+..|++.+.....+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (467)
T COG5048         369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLL  448 (467)
T ss_pred             CCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCcee
Confidence            1     01101112222233322  5556666666666666665544  3555677777777777777755544433333


Q ss_pred             c
Q psy2838         351 C  351 (458)
Q Consensus       351 C  351 (458)
                      |
T Consensus       449 ~  449 (467)
T COG5048         449 C  449 (467)
T ss_pred             e
Confidence            3

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.95  E-value=0.0042  Score=34.84  Aligned_cols=23  Identities=30%  Similarity=0.645  Sum_probs=10.6

Q ss_pred             ccCccccccCCCHHHHHHHHhhcc
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |+|+.|++... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            34555555554 555555554444

>KOG2482|consensus

Probab=95.92  E-value=0.017  Score=54.12  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             ccCccccccCCCHHHHHHHHhh
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      -.|-.|...|.....|..||..
T Consensus       335 ~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  335 SRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             cccccccccccCcchhhhhccc
Confidence            4688899999999999999854

>smart00355 ZnF_C2H2 zinc finger

Probab=95.88  E-value=0.0063  Score=34.39  Aligned_cols=20  Identities=30%  Similarity=0.966  Sum_probs=9.3

Q ss_pred             cCccccccCCCHHHHHHHHh
Q psy2838         322 KCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       322 ~C~~C~~~f~~~~~L~~H~~  341 (458)
                      .|..|++.|.....|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            34444444444444444443

>KOG2785|consensus

Probab=95.64  E-value=0.028  Score=53.71  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=38.3

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCc-----------------------cccCcccc---ccCCCHHHHHHHHhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQ-----------------------KYKCADCG---RLFAQEHTLRTHTLS  342 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~-----------------------~~~C~~C~---~~f~~~~~L~~H~~~  342 (458)
                      -.|-.|++.+.+...-..||..+|+-.                       -|.|-.|+   +.|.+....+.||..
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            567777777777777777777776531                       27899998   999999999999865

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.64  E-value=0.008  Score=33.98  Aligned_cols=20  Identities=30%  Similarity=0.825  Sum_probs=9.2

Q ss_pred             ecCccCcccCChhHHHHHHh
Q psy2838         294 TCEVCSKSYNQVTNLLSHMT  313 (458)
Q Consensus       294 ~C~~C~~~f~~~~~L~~H~~  313 (458)
                      .|.+|++.|.+...|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            34444444444444444443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.63  E-value=0.002  Score=65.13  Aligned_cols=159  Identities=21%  Similarity=0.258  Sum_probs=114.4

Q ss_pred             CcccccccccccCCHHHHHHHHH--hhcCC--Cccccc--cCccccCChHHHHHHHHHhcCCceeecCc--cccccCCch
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVN--SIHLG--VRIKCD--FCDKTFAHKPNLIAHMNSAHNGVRFKCDH--CVKSFNQKP  250 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~--~~h~~--~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~  250 (458)
                      .++.|..|...|.....|..|.+  .|..+  .++.|+  .|++.|.....+..|...|.+..++.|..  |...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            57999999999999999999999  67777  789999  79999999999999999999988887765  444444433


Q ss_pred             hhhhccc-----hhccCcceecCc--ccccccCHHHHHHHHHHhhcCc--eeecCccCcccCChhHHHHHHhhhccCccc
Q psy2838         251 NLISHIK-----SVHEGIKYKCEE--CTKTFAQKQNLLSHVQAIHMGI--KYTCEVCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       251 ~L~~H~~-----~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~--~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      .-..+..     .......+.|..  |...+.....+..|...+-...  .+.+..|.+.|.....+..|++.|....++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL  447 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence            3211111     112223444433  6677777777777764444433  378888999999999999999999887766


Q ss_pred             cCccccccCCCHHHHHH
Q psy2838         322 KCADCGRLFAQEHTLRT  338 (458)
Q Consensus       322 ~C~~C~~~f~~~~~L~~  338 (458)
                      .|..+. .|.....+..
T Consensus       448 ~~~~~~-~~~~~~~~~~  463 (467)
T COG5048         448 LCSILK-SFRRDLDLSN  463 (467)
T ss_pred             eecccc-ccchhhhhhc
Confidence            665544 3444444433

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.61  E-value=0.0058  Score=34.59  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=13.0

Q ss_pred             cccCcCcccCCCHHHHHHHHHH
Q psy2838         349 LTCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      |.|.+|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3466666666666666666543

>PRK04860 hypothetical protein; Provisional

Probab=95.19  E-value=0.012  Score=50.38  Aligned_cols=37  Identities=24%  Similarity=0.662  Sum_probs=24.9

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccCccccCccccccCCC
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQ  332 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~  332 (458)
                      +|.|. |+.   ....+.+|.++|.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            36776 765   45566777777777777777777766654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.97  E-value=0.0062  Score=35.27  Aligned_cols=21  Identities=24%  Similarity=0.697  Sum_probs=11.3

Q ss_pred             cccCcCcccCCCHHHHHHHHH
Q psy2838         349 LTCRTCGLFCDSKRALTAHVR  369 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~  369 (458)
                      |+|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            445555555555555555543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=94.86  E-value=0.017  Score=49.48  Aligned_cols=26  Identities=12%  Similarity=0.371  Sum_probs=12.3

Q ss_pred             HHHHHHHHHhcCCceeecCccccccC
Q psy2838         222 PNLIAHMNSAHNGVRFKCDHCVKSFN  247 (458)
Q Consensus       222 ~~L~~H~~~h~~~~~~~C~~C~~~f~  247 (458)
                      ..+.+|.++|.++++|.|..|+..|.
T Consensus       129 ~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        129 LTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             CHHHHHHHHhcCCccEECCCCCceeE
Confidence            34444444444444444444444443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.38  E-value=0.017  Score=33.39  Aligned_cols=21  Identities=29%  Similarity=0.774  Sum_probs=11.2

Q ss_pred             eecCccCcccCChhHHHHHHh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMT  313 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~  313 (458)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            445555555555555555554

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4173|consensus

Probab=94.16  E-value=0.021  Score=49.50  Aligned_cols=29  Identities=21%  Similarity=0.592  Sum_probs=20.1

Q ss_pred             cCccccC--ccccccCCCHHHHHHHHhhccC
Q psy2838         317 QAQKYKC--ADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       317 ~~~~~~C--~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      |..-|+|  ..|+..|.+...-+.|+...|.
T Consensus       141 G~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  141 GQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             CccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            3455777  4588888887777777766664

>KOG2893|consensus

Probab=94.14  E-value=0.02  Score=50.75  Aligned_cols=49  Identities=35%  Similarity=0.682  Sum_probs=32.9

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhcc
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHE  261 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~  261 (458)
                      -.|.+|++.|....-|.+|++..|    |+|.+|.+...+--.|..|....|.
T Consensus        11 pwcwycnrefddekiliqhqkakh----fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             ceeeecccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceeehhhhhh
Confidence            357777777777777777776543    6777777776666667776654443

>KOG4173|consensus

Probab=93.06  E-value=0.031  Score=48.49  Aligned_cols=52  Identities=29%  Similarity=0.606  Sum_probs=40.9

Q ss_pred             CCcccccc--cccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhc
Q psy2838         178 VKKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAH  232 (458)
Q Consensus       178 ~k~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~  232 (458)
                      ...|.|++  |...|.....+..|..+.|+.   .|.+|.+.|.+...|..|+...|
T Consensus        77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~H  130 (253)
T KOG4173|consen   77 VPAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWH  130 (253)
T ss_pred             cccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHH
Confidence            45688886  888888888888887655553   59999999999999999987655

>cd07765 KRAB_A-box KRAB (Kruppel-associated box) domain -A box

Probab=93.06  E-value=0.0079  Score=36.21  Aligned_cols=29  Identities=7%  Similarity=-0.015  Sum_probs=26.4

Q ss_pred             ceeeecchhHHHHHHHhcCCCcCCCCCCC
Q psy2838          43 YNYYQLSSDEKFEILKSISASFTPGYGGF   71 (458)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   71 (458)
                      ++|.||++.|+.++|.++.++++.+|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   29 (40)
T cd07765           1 VTFEDVAVYFSQEEWELLDPAQRDLYRDV   29 (40)
T ss_pred             CcceeeeeecCHHHHhcCCHHHHHHHHHH
Confidence            46899999999999999999999998876

The KRAB domain is a transcription repression module, found in a subgroup of the zinc finger proteins (ZFPs) of the C2H2 family, KRAB-ZFPs. KRAB-ZFPs comprise the largest group of transcriptional regulators in mammals, and are only found in tetrapods. These proteins have been shown to play important roles in cell differentiation and organ development, and in regulating viral replication and transcription. A KRAB domain may consist of an A-box, or of an A-box plus either a B-box, a divergent B-box (b), or a C-box. Only the A-box is included in this model. The A-box is needed for repression, the B- and C- boxes are not. KRAB-ZFPs have one or two KRAB domains at their amino-terminal end, and multiple C2H2 zinc finger motifs at their C-termini. Some KRAB-ZFPs also contain a SCAN domain which mediates homo- and hetero-oligomerization. The KRAB domain is a protein-protein interaction module which represses transcription through

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.47  E-value=0.14  Score=40.57  Aligned_cols=23  Identities=22%  Similarity=0.576  Sum_probs=11.7

Q ss_pred             eecCccCcccCChhHHHHHHhhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h  315 (458)
                      |.|+.|...|-..-.+..|...|
T Consensus        82 y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        82 YVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             eeCCCCCCccccccchhhhhhcc
Confidence            55555555555544444554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2893|consensus

Probab=92.47  E-value=0.028  Score=49.85  Aligned_cols=46  Identities=24%  Similarity=0.584  Sum_probs=25.6

Q ss_pred             cCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         295 CEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       295 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |-+|++.|.....|.+|++..    -|+|.+|.+...+--.|..|-..+|
T Consensus        13 cwycnrefddekiliqhqkak----hfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceeehhhhh
Confidence            556666666666666665543    2666666665555545555543333

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=91.78  E-value=0.26  Score=39.48  Aligned_cols=25  Identities=32%  Similarity=0.707  Sum_probs=19.9

Q ss_pred             ccc----CcCcccCCCHHHHHHHHHHhCC
Q psy2838         349 LTC----RTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       349 ~~C----~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      |.|    ..|++.+.+...|.+|++.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            668    8888888888888888888774

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.15  E-value=0.17  Score=31.09  Aligned_cols=23  Identities=17%  Similarity=0.535  Sum_probs=15.5

Q ss_pred             ccccCcCcccCCCHHHHHHHHHH
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      +|.|.+|++.|.+...+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            45677777777777777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.90  E-value=0.21  Score=28.20  Aligned_cols=19  Identities=26%  Similarity=0.555  Sum_probs=10.5

Q ss_pred             ccCcCcccCCCHHHHHHHHH
Q psy2838         350 TCRTCGLFCDSKRALTAHVR  369 (458)
Q Consensus       350 ~C~~C~~~f~~~~~L~~H~~  369 (458)
                      .|+.||+.| ....|.+|++
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            356666666 4455555554

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.37  E-value=0.25  Score=27.88  Aligned_cols=18  Identities=28%  Similarity=0.698  Sum_probs=8.2

Q ss_pred             ccccCccccCChHHHHHHH
Q psy2838         210 KCDFCDKTFAHKPNLIAHM  228 (458)
Q Consensus       210 ~C~~C~~~f~~~~~L~~H~  228 (458)
                      .|+.|++.| ....|.+|+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHH
Confidence            344444444 334444444

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.49  E-value=0.45  Score=38.09  Aligned_cols=24  Identities=17%  Similarity=0.505  Sum_probs=17.0

Q ss_pred             cccccCccccCChHHHHHHHHHhcC
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHN  233 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~  233 (458)
                      ..|..|+....- +++..|++..|.
T Consensus        12 lIC~~C~~av~~-~~v~~HL~~~H~   35 (109)
T PF12013_consen   12 LICRQCQYAVQP-SEVESHLRKRHH   35 (109)
T ss_pred             EEeCCCCcccCc-hHHHHHHHHhcc
Confidence            578888877654 788888885443

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=89.29  E-value=0.74  Score=36.60  Aligned_cols=29  Identities=24%  Similarity=0.581  Sum_probs=15.2

Q ss_pred             ccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCC
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDS  360 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~  360 (458)
                      ..|+.||++|-...           ..+..|+.||..|.-
T Consensus        10 R~Cp~CG~kFYDLn-----------k~PivCP~CG~~~~~   38 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN-----------KDPIVCPKCGTEFPP   38 (108)
T ss_pred             ccCCCCcchhccCC-----------CCCccCCCCCCccCc
Confidence            45666666554321           134556666666543

The function of members of this family is unknown.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.01  E-value=0.43  Score=29.16  Aligned_cols=22  Identities=14%  Similarity=0.647  Sum_probs=13.3

Q ss_pred             eecCccCcccCChhHHHHHHhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTT  314 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~  314 (458)
                      |.|.+|++.|.+...+..|++.
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             eEccccCCccCCHHHHHHHHCh
Confidence            5566666666666666666543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=87.64  E-value=0.25  Score=33.31  Aligned_cols=27  Identities=30%  Similarity=0.623  Sum_probs=19.7

Q ss_pred             CccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         347 VRLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       347 ~~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      .-+.|+-|+..|.......+|+.+.|+
T Consensus        16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          16 EFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             eeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            345577777777777777777777775

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=87.21  E-value=0.36  Score=29.35  Aligned_cols=11  Identities=45%  Similarity=1.216  Sum_probs=5.6

Q ss_pred             eecCccCcccC
Q psy2838         293 YTCEVCSKSYN  303 (458)
Q Consensus       293 ~~C~~C~~~f~  303 (458)
                      |+|.+||..+.
T Consensus         2 ~~C~~CGy~y~   12 (33)
T cd00350           2 YVCPVCGYIYD   12 (33)
T ss_pred             EECCCCCCEEC
Confidence            45555555443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.98  E-value=1.3  Score=35.22  Aligned_cols=45  Identities=20%  Similarity=0.478  Sum_probs=26.3

Q ss_pred             ecCccccccCCchhhhhccchhccCcceecCcccccccCHHHHHHHH
Q psy2838         238 KCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       238 ~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      .|--|...|........-  .......|.|+.|...|-..-++-.|.
T Consensus        57 ~C~~C~~~f~~~~~~~~~--~~~~~~~y~C~~C~~~FC~dCD~fiHe  101 (112)
T TIGR00622        57 FCFGCQGPFPKPPVSPFD--ELKDSHRYVCAVCKNVFCVDCDVFVHE  101 (112)
T ss_pred             cccCcCCCCCCccccccc--ccccccceeCCCCCCccccccchhhhh
Confidence            377777777654311100  012234678888888887777777775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.52  E-value=0.34  Score=32.66  Aligned_cols=30  Identities=20%  Similarity=0.513  Sum_probs=22.9

Q ss_pred             ccCccccCccccccCCCHHHHHHHHhhccC
Q psy2838         316 HQAQKYKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       316 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      .++.-+.|+.|+..|....+..+|+.+.|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            355667888888888888888888776664

>KOG2186|consensus

Probab=85.01  E-value=0.36  Score=43.66  Aligned_cols=46  Identities=30%  Similarity=0.705  Sum_probs=26.5

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccc
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      |.|..||.... +..|.+|+-..++ ..|.|-.|++.|.. ..+..|..
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            55666666543 3455556665555 45666666666655 45555554

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.21  E-value=0.57  Score=37.25  Aligned_cols=34  Identities=29%  Similarity=0.753  Sum_probs=27.4

Q ss_pred             cCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCH
Q psy2838         289 MGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQE  333 (458)
Q Consensus       289 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~  333 (458)
                      .+.+..|+.||+.|....           ..|..|++||..|.-.
T Consensus         6 lGtKR~Cp~CG~kFYDLn-----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    6 LGTKRTCPSCGAKFYDLN-----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             cCCcccCCCCcchhccCC-----------CCCccCCCCCCccCcc
Confidence            355689999999997642           3788999999998776

The function of members of this family is unknown.

>KOG0943|consensus

Probab=81.96  E-value=1.5  Score=48.23  Aligned_cols=10  Identities=40%  Similarity=1.115  Sum_probs=4.9

Q ss_pred             CCcccccccc
Q psy2838         178 VKKFPCDQCG  187 (458)
Q Consensus       178 ~k~~~C~~C~  187 (458)
                      ..-|.|..||
T Consensus      1255 QDIfECkTCG 1264 (3015)
T KOG0943|consen 1255 QDIFECKTCG 1264 (3015)
T ss_pred             chhhhhcccc
Confidence            3345555554

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.78  E-value=1.1  Score=29.30  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=12.3

Q ss_pred             cccCcCcccCCCH----HHHHHHHHHhC
Q psy2838         349 LTCRTCGLFCDSK----RALTAHVREAH  372 (458)
Q Consensus       349 ~~C~~C~~~f~~~----~~L~~H~~~~h  372 (458)
                      ..|.+|++.+...    +.|.+|++..|
T Consensus        17 a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   17 AKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             EEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            4466666666553    56666665544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG1832|consensus

Probab=80.73  E-value=0.72  Score=49.15  Aligned_cols=14  Identities=14%  Similarity=0.356  Sum_probs=8.2

Q ss_pred             CcCcccCCCHHHHH
Q psy2838         352 RTCGLFCDSKRALT  365 (458)
Q Consensus       352 ~~C~~~f~~~~~L~  365 (458)
                      ..|...|.+.....
T Consensus      1303 dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVM 1316 (1516)
T ss_pred             cceEEEeccCccch
Confidence            45667776655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-21
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-13
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-08
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-08
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		6e-06
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		4e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		6e-07
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-06
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		1e-05
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		3e-05
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-05
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		5e-05
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-05
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 176 PPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNG 234
           P  K + C +CGKSF+   +L  H    H G +  KC  C K+F+ K +L  H  + H G
Sbjct: 17  PGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG 74
Query: 235 VR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
            + +KC  C KSF+Q+ NL +H +  H G K Y C EC K+F+Q  +L +H Q  H G K
Sbjct: 75  EKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEK 132
Query: 293 -YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT 350
            Y C  C KS+++  NL +H  T    + YKC +CG+ F++   L  H    H+G + +
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR-THTGKKTS 190

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
           + C  C KSF++  +L  H +  H G K YKC EC K+F+ K++L  H Q  H G K Y 
Sbjct: 22  YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYK 79
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRT 353
           C  C KS++Q  NL +H  T    + Y C +CG+ F+Q   LR H    H+G +   C  
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPE 138
Query: 354 CGLFCDSKRALTAHVR 369
           CG     +  L  H R
Sbjct: 139 CGKSFSREDNLHTHQR 154

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
           YKC EC K+F+Q  NL  H Q  H G K Y C  C KS++Q ++L  H  T    + YKC
Sbjct: 5   YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 324 ADCGRLFAQEHTLRTH 339
            +CG+ F++   L  H
Sbjct: 64  PECGKSFSRSDHLSRH 79

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAI 287
           +S  +GV  +C  C K F  K  L  H +  H G K ++C +C K + +K+NLL H    
Sbjct: 2   SSGSSGV--ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARN 58
Query: 288 HMGIK---YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH 344
            M      +TC VC +++ +   L  HM +      YKC+ C + F Q+  L++H + +H
Sbjct: 59  CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 345 SG 346
           SG
Sbjct: 119 SG 120

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
           K +PC QCGKSFT K     H+ S+HLG+R   C  C K F  K +L+ HM   H G++ 
Sbjct: 9   KLYPC-QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKP 65
Query: 237 FKCDHCVKSFNQKPNLISHIKS 258
           ++C+ C K F  + +   H+ S
Sbjct: 66  YECNICAKRFMWRDSFHRHVTS 87

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
           C K+F HK     HM S H G+R + C  C K F  K +L+ H+K +H GIK Y+C  C 
Sbjct: 15  CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICA 72
Query: 272 KTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQV 305
           K F  + +   HV +           C+KSY   
Sbjct: 73  KRFMWRDSFHRHVTS-----------CTKSYEAA 95

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 184 DQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCD--------KTFAHKPNLIAHMNSAHNGV 235
           D C + F  ++ L +H+NS H+    K   C         + F  +  L+ HM   H G 
Sbjct: 7   DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGE 65
Query: 236 R-FKC--DHCVKSFNQKPNLISHIKSVHEGIK-YKCEE--CTKTFAQKQNLLSHVQAIHM 289
           +  KC  + C KS+++  NL +H++S H G K Y CE   C+K F+   +   H    H 
Sbjct: 66  KPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 290 GIK-YTCEV--CSKSYNQVTNLLSHMTTVH 316
             K Y C++  C+K Y   ++L  H+ TVH
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F+QK NL +H++ IH G K + C +C ++++Q T L  H+ T    + +
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA  HT   HT
Sbjct: 64  ACDICGRKFATLHTRDRHT 82

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F+QK NL +H++ IH G K + C +C ++++Q  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA  HT   HT
Sbjct: 64  ACDICGRKFATLHTRTRHT 82

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           F C  C KSF +   L +H+    +   Y C+ C K F QK ++  H   IH G K + C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 296 EVCSKSYNQVTNLLSH 311
           +VC K+++Q +NL++H
Sbjct: 61  QVCGKAFSQSSNLITH 76

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
           R+KCD C KSF+   +L  H +  H G K YKC+EC K F Q+ +L+ H   +H G
Sbjct: 18  RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVHTG 71

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F+   NL  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 64  ACDICGRKFARSDERKRHT 82

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F+Q  +L  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 64  ACDICGRKFARSDERKRHT 82

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 264 KYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
           ++ C+ C + F +  NLL H +       YTC++C K++ +  +L  H     + + +KC
Sbjct: 17  EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 324 ADCGRLFAQEHTLRTH 339
            +CG+ F Q  TL  H
Sbjct: 77  QECGKGFCQSRTLAVH 92

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F++  +L  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 64  ACDICGRKFARSDERKRHT 82

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F++   L  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 64  ACDICGRKFARSDERKRHT 82

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F++   L  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 4   YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 63  ACDICGRKFARSDERKRHT 81

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F++   L  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 64  ACDICGRKFARSDERKRHT 82

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
           Y C  E C + F++   L  H++ IH G K + C +C +++++  +L +H+ T    + +
Sbjct: 5   YACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
            C  CGR FA+    + HT
Sbjct: 64  ACDICGRKFARSDERKRHT 82

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
           YKC+ C  +F  K NL SH + +H G K Y C +C   +N+  NL +H T +H  +K
Sbjct: 18  YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEK 72

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EEC 270
           C K F     +  H+++ H      C  C K+F +   L  H + VH G K ++C  E C
Sbjct: 13  CTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGC 70
Query: 271 TKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQ 319
            K F+   NL +HV+ IH G + Y C  + C+K + Q TNL SH+ T  +A+
Sbjct: 71  GKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-34
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-24
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-25
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-25
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-24
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-24
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-24
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-21
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-17
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-19
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-19
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-14
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-19
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-19
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-18
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-14
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-18
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-17
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-18
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-18
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-15
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-17
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-16
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	9e-16
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-17
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-17
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-16
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-15
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-14
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-12
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-13
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-13
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	6e-12
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-12
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-07
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-12
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-10
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-09
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	7e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	9e-11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-11
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	8e-11
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	7e-11
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	4e-09
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-10
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-10
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-08
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	5e-09
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-08
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-08
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-08
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	5e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	2e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	7e-06
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-05
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	1e-05
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	2e-05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	7e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-05
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	2e-05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	1e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	2e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	3e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-05
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-05
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-05
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-05
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	5e-05
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	5e-05
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-05
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-05
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-05
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	7e-05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-05
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-05
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-05
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-05
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-05
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	1e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	4e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	6e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score =  125 bits (317), Expect = 3e-34
 Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 14/171 (8%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
           K + C +CGKSF+   +L  H    H G +  KC  C K+F+ K +L  H  + H G + 
Sbjct: 20  KPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEKP 77

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
           +KC  C KSF+Q+ NL +H +  H G K Y C EC K+F+Q  +L +H Q  H G K Y 
Sbjct: 78  YKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYK 135

Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
           C  C KS+++  NL +H  T H  +K YKC +CG+ F++   L    RTHT
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQRTHT 185

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 98.7 bits (247), Expect = 3e-24
 Identities = 56/159 (35%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 217 TFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTF 274
           +     + +A   +   G + + C  C KSF++  +L  H +  H G K YKC EC K+F
Sbjct: 2   SEFGSSSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSF 59

Query: 275 AQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQ 332
           + K++L  H Q  H G K Y C  C KS++Q  NL +H  T H  +K Y C +CG+ F+Q
Sbjct: 60  SDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQ 117

Query: 333 EHTLRTHTLSVHSGVRL-TCRTCG-LFCDSKRALTAHVR 369
              LR H    H+G +   C  CG  F      L  H R
Sbjct: 118 LAHLRAHQ-RTHTGEKPYKCPECGKSFSRE-DNLHTHQR 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score =  101 bits (253), Expect = 1e-25
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIK--------CDFCDKTFAHKPNLIAHMNS 230
                D C + F  ++ L +H+NS H+    K        C    + F  +  L+ HM  
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 231 AHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEE--CTKTFAQKQNLLSHV 284
            H G +  KC    C KS+++  NL +H++S H G K Y CE   C+K F+   +   H 
Sbjct: 62  -HTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQ 119

Query: 285 QAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVH 316
              H   K Y C++  C+K Y   ++L  H+ TVH
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 99.6 bits (249), Expect = 4e-25
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR---FKCDHC-----VKSFNQKPNLISHIKSVHE 261
           + D C + F  +  L+ H+NS H       F C        ++ F  +  L+ H++  H 
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHT 63

Query: 262 GIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCE--VCSKSYNQVTNLLSHMTTV 315
           G K +KC  E C K++++ +NL +H    H G K Y CE   CSK+++  ++   H    
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122

Query: 316 HQAQK-YKC--ADCGRLFAQEHTLRTHTLSVHSG 346
           H  +K Y C    C + +    +LR H +    G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKH-VKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 65.3 bits (160), Expect = 7e-13
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 16/91 (17%)

Query: 265 YKCEECTKTFAQKQNLLSHV--QAIHMGIK-YTCEVC-----SKSYNQVTNLLSHMTTVH 316
            + + C++ F  ++ L+ H+  + IH   K + C         + +     L+ HM   H
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-H 62

Query: 317 QAQK-YKC--ADCGRLFAQEHTL----RTHT 340
             +K +KC    C + +++   L    R+HT
Sbjct: 63  TGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 96.8 bits (242), Expect = 2e-24
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 7/119 (5%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM--NSAHNGV 235
               C  C K F  K  L  H N  H G +  +C  C K +  K NL+ H   N  +   
Sbjct: 6   SGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64

Query: 236 R-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           + F C  C ++F ++  L  H    H G   YKC  C++ F QK++L SH+  +H G  
Sbjct: 65  QVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 96.8 bits (242), Expect = 2e-24
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)

Query: 231 AHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSH--VQA 286
             +G    +C  C K F  K  L  H    H G K ++C +C K + +K+NLL H     
Sbjct: 1   GSSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59

Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVH 344
           ++   + +TC VC +++ +   L  HM + H  +  YKC+ C + F Q+  L++H + +H
Sbjct: 60  MNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

Query: 345 SG 346
           SG
Sbjct: 119 SG 120

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 98.8 bits (247), Expect = 2e-24
 Identities = 48/184 (26%), Positives = 66/184 (35%), Gaps = 27/184 (14%)

Query: 179 KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKCD--FCDKTFAHKPNLIAHMNSAHN 233
           K++ C    CG ++     L  H    H G +   C    C+K F    +L  H  + H 
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HT 68

Query: 234 GVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK---YKC--EECTKTFAQKQNLLSHVQ 285
           G + F CD   C   F  K N+  H       IK   Y C  E C K F +   L  H Q
Sbjct: 69  GEKNFTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVH-Q 126

Query: 286 AIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQK----YKCADCGRLFA--QEHTL 336
             H     Y C  E C K ++  + L  H    H          C+  G+ +    +H  
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLYLKHVA 185

Query: 337 RTHT 340
             H 
Sbjct: 186 ECHQ 189

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 88.1 bits (219), Expect = 7e-21
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 31/173 (17%)

Query: 158 KTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKT 217
            + Q      +     +       P   C ++F+    L  HV  +              
Sbjct: 5   SSGQPIKQELSCKWIDEAQ--LSRPKKSCDRTFSTMHELVTHVT-MEHV----------- 50

Query: 218 FAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTF 274
               P       + H     +C    KSF  K  L++HI+ VH G K + C    C K F
Sbjct: 51  --GGPE-----QNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIF 102

Query: 275 AQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVHQAQK-YKC 323
           A+ +NL  H +  H G K + CE   C + +   ++   HM   H + K    
Sbjct: 103 ARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 31/169 (18%)

Query: 187 GKSFTLKQNLTYHVNS--IHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCV 243
           G S +  Q +   ++   I           CD+TF+    L+ H+   H G   + +H  
Sbjct: 1   GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60

Query: 244 KSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSK 300
                                 +C    K+F  K  L++H   +H G K + C    C K
Sbjct: 61  YW-------------------EECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGK 100

Query: 301 SYNQVTNLLSHMTTVHQAQK-YKCA--DCGRLFAQEHTLRTHTLSVHSG 346
            + +  NL  H  T H  +K +KC    C R FA     + H   VH+ 
Sbjct: 101 IFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTS 147

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 82.9 bits (206), Expect = 1e-19
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
           K +PC QCGKSFT K     H  S+HLG+R   C  C K F  K +L+ HM   H G++ 
Sbjct: 9   KLYPC-QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKP 65

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLS 282
           ++C+ C K F  + +   H+       K Y+  +  +   +     S
Sbjct: 66  YECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
           + C  C KSF  K     H  S+H G++ Y C  C K F  K +L+ H   IH GIK Y 
Sbjct: 11  YPC-QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYE 67

Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRT 338
           C +C+K +    +   H   V    K Y+ A   +   +     +
Sbjct: 68  CNICAKRFMWRDSFHRH---VTSCTKSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 67.9 bits (167), Expect = 3e-14
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)

Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTV 315
           S   G K Y C+ C K+F  K     H  ++H+G++ Y C VC K +    +L+ HM   
Sbjct: 3   SGSSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI- 59

Query: 316 HQAQK-YKCADCGRLFAQEHTL--RTHT 340
           H   K Y+C  C + F    +      +
Sbjct: 60  HTGIKPYECNICAKRFMWRDSFHRHVTS 87

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVH 344
              G K Y C+ C KS+   +    HM+  H   + Y C  CG+ F  +H L  H + +H
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60

Query: 345 SGVR-LTCRTCG 355
           +G++   C  C 
Sbjct: 61  TGIKPYECNICA 72

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 81.7 bits (203), Expect = 2e-19
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
            KC+ C K F++K  L +H    H G+K YKC+ C    A   +L  H   IH   + + 
Sbjct: 9   HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFK 66

Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCA 324
           C++C  +    + L  H+ + H         
Sbjct: 67  CQICPYASRNSSQLTVHLRS-HTGDSGPSSG 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQ 317
                 +KCE C K F++K  L +H    H G+K Y C+ C  +    ++L  H+   H 
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS 60

Query: 318 AQK-YKCADCGRLFAQEHTL----RTHT 340
            ++ +KC  C         L    R+HT
Sbjct: 61  DERPFKCQICPYASRNSSQLTVHLRSHT 88

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 72.1 bits (178), Expect = 6e-16
 Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 32/119 (26%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
               C+ CGK F+ K  L  H+   H GV             KP              +K
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMR-CHTGV-------------KP--------------YK 38

Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           C  C  +     +L  H++ +H   + +KC+ C         L  H    H G    + 
Sbjct: 39  CKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVH-LRSHTGDSGPSS 95

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 210 KCD--FCDKTFAHKPNLIAHMNSAHNGVR-FKCD--HCVKSFNQKPNLISHIKSVHEGIK 264
            C    C+K +    +L  H    H G + ++CD   C + F++   L  H +  H G+K
Sbjct: 8   MCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65

Query: 265 -YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTT 314
            ++C+ C + F++  +L +H    H G K ++C    C K + +   L+ H   
Sbjct: 66  PFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 77.9 bits (193), Expect = 9e-18
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 13/119 (10%)

Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHN 233
           + F C    C K +    +L  H    H G +  +CDF  C++ F+    L  H    H 
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HT 62

Query: 234 GVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE--ECTKTFAQKQNLLSHVQAIH 288
           GV+ F+C  C + F++  +L +H +  H G K + C    C K FA+   L+ H   +H
Sbjct: 63  GVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 67.9 bits (167), Expect = 3e-14
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 265 YKCEE--CTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVHQAQ 319
           + C    C K + +  +L  H    H G K Y C+   C + +++   L  H    H   
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGV 64

Query: 320 K-YKCADCGRLFAQEHTL----RTHT 340
           K ++C  C R F++   L    RTHT
Sbjct: 65  KPFQCKTCQRKFSRSDHLKTHTRTHT 90

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK- 292
             C H  C K F     +  H+   H G + + C EC K F +   L  H Q +H G K 
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKP 62

Query: 293 YTCEV--CSKSYNQVTNLLSHMTTVHQAQK-YKCA--DCGRLFAQEHTLRTHTLSVHSG 346
           + C    C K ++   NL +H+   H   + Y C    C + FAQ   L++H L  H+ 
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHIL-THAK 119

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 38/146 (26%), Positives = 52/146 (35%), Gaps = 43/146 (29%)

Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAH--KPNLIAHMNSAHNG 234
           +   C    C K F     +  H       +            H  +             
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKH-------LHT----------HGPRV------------ 34

Query: 235 VRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGI 291
               C  C K+F +   L  H   VH G K ++C  E C K F+   NL +H   IH G 
Sbjct: 35  --HVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGD 90

Query: 292 K-YTCEV--CSKSYNQVTNLLSHMTT 314
           + Y C    C+K + Q TNL SH+ T
Sbjct: 91  RPYVCPFDGCNKKFAQSTNLKSHILT 116

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 61.8 bits (151), Expect = 6e-12
 Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 35/119 (29%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
           +   C +CGK+F     L  H   +H G              KP              F+
Sbjct: 33  RVHVCAECGKAFVESSKLKRHQ-LVHTG-------------EKP--------------FQ 64

Query: 239 CDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK 292
           C    C K F+   NL +H++ +H G + Y C  + C K FAQ  NL SH    H   K
Sbjct: 65  CTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTHAKAK 121

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 79.0 bits (196), Expect = 3e-18
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
            C FC + F    NL+ H  + H   R + CD C K+F ++ +L  H + +H   K +KC
Sbjct: 19  ICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76

Query: 268 EECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           +EC K F Q + L  H + +HM     T 
Sbjct: 77  QECGKGFCQSRTLAVH-KTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNL 308
                 +   +  K + C+ C + F +  NLL H +  H   + YTC++C K++ +  +L
Sbjct: 4   GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHL 61

Query: 309 LSHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
             H    H  +K +KC +CG+ F Q  TL      H 
Sbjct: 62  RDHRYI-HSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 47.4 bits (114), Expect = 3e-07
 Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 30/90 (33%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
           + + CD C K+F  + +L  H   IH                KP              FK
Sbjct: 44  RPYTCDICHKAFRRQDHLRDH-RYIHSK-------------EKP--------------FK 75

Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
           C  C K F Q   L  H K++H        
Sbjct: 76  CQECGKGFCQSRTLAVH-KTLHMQTSSPTA 104

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 77.5 bits (192), Expect = 6e-18
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
           ++C  C + F++  +L +H    H G K + C++C + + +      H            
Sbjct: 4   FQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDI-QHILPILE 61

Query: 324 ADCGRLFAQEHTLRTHTLS--VHSG 346
                L ++ + L           G
Sbjct: 62  DKVEELLSKNYHLENEVARLKKLVG 86

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 68.3 bits (168), Expect = 9e-15
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 31/117 (26%)

Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRF 237
           +K F C  C ++F+   +LT H+   H G              KP              F
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIR-THTG-------------EKP--------------F 32

Query: 238 KCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQA--IHMGIK 292
            CD C + F +      H   +   +    ++  +  ++  +L + V      +G +
Sbjct: 33  ACDICGRKFARSDERKRHRD-IQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 76.7 bits (190), Expect = 1e-17
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
           F C  C KSF +   L +H   +H   + Y C+ C K F QK ++  H   IH G K + 
Sbjct: 2   FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK 59

Query: 295 CEVCSKSYNQVTNLLSHM 312
           C+VC K+++Q +NL++H 
Sbjct: 60  CQVCGKAFSQSSNLITHS 77

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 72.5 bits (179), Expect = 3e-16
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
            C  C K+F     L  H+   H+  R + C +C K F+QK ++  H   +H G K +KC
Sbjct: 3   DCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60

Query: 268 EECTKTFAQKQNLLSHVQAIHMG 290
           + C K F+Q  NL++H    H G
Sbjct: 61  QVCGKAFSQSSNLITH-SRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 70.9 bits (175), Expect = 9e-16
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YK 322
           + C+ C K+F +   L +H   IH   + Y C+ C K ++Q +++  H    H  +K +K
Sbjct: 2   FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59

Query: 323 CADCGRLFAQEHTLRTH 339
           C  CG+ F+Q   L TH
Sbjct: 60  CQVCGKAFSQSSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
           + +PC  CGK F  K ++  H   IH G +  KC  C K F+   NLI H 
Sbjct: 28  RPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHS 77

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 75.6 bits (187), Expect = 3e-17
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVH--EGIK-Y 265
            C+ C K F    +L  H  S H+G + + C  C   F +K  +  H    H     K Y
Sbjct: 9   ACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPY 66

Query: 266 KCEECTKTFAQKQNLLSHVQAIHMGIK 292
            C+ C K F++  +L  H++ +H G  
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVHSGPS 93

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 75.6 bits (187), Expect = 4e-17
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVH- 316
             G     CE C K F    +L  H +  H G K Y+C VC   + +   +  H+ + H 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HD 59

Query: 317 -QAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
               K Y C  CG+ F++   L  H   VHSG
Sbjct: 60  GSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 158 KTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
             F+     +   R   G   K + C  CGK F+   +L  H+  +H G
Sbjct: 43  LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 73.7 bits (182), Expect = 2e-16
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK- 320
           Y C  E C + F+Q  +L  H   IH G K + C +C +++++  +L +H+ T H  +K 
Sbjct: 5   YACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP 62

Query: 321 YKCADCGRLFAQEHTL----RTHT 340
           + C  CGR FA+        + H 
Sbjct: 63  FACDICGRKFARSDERKRHTKIHL 86

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 210 KCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-Y 265
            C    CD+ F+   +L  H+   H G + F+C  C+++F++  +L +HI+  H G K +
Sbjct: 6   ACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63

Query: 266 KCEECTKTFAQKQNLLSHVQAIHMGIK 292
            C+ C + FA+      H   IH+  K
Sbjct: 64  ACDICGRKFARSDERKRH-TKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
           K F C  C ++F+   +LT H+   H G +   CD C + FA       H 
Sbjct: 33  KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHT 82

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 66.0 bits (162), Expect = 4e-14
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 223 NLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVH--EGIK-YKCEECTKTFAQKQ 278
           +  +   + H+G + ++C  C   F Q   +  HI      E +  + C  C    A+K 
Sbjct: 2   SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKS 59

Query: 279 NLLSHVQAIHMGIK-YT 294
           +L  H++  H      +
Sbjct: 60  DLGVHLRKQHSYSGPSS 76

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG--IK-YTCEVCSKSYNQVT 306
           +  S  +  H G K Y+C  C   F Q   +  H         +  + C  C     + +
Sbjct: 2   SSGSSGR-THSGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKS 59

Query: 307 NLLSHMTTVH 316
           +L  H+   H
Sbjct: 60  DLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 279 NLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVH--QAQKYKCADCGRLFAQEHT 335
           +  S     H G K Y C +C   + Q   +  H+   H     K+ C  C  + A++  
Sbjct: 2   SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 336 LRTHTLSVHSG 346
           L  H    HS 
Sbjct: 61  LGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIK---CDFCDKTFAHKPNLIAHMNSAHNG 234
           K + C  C   FT    +  H+        +    C  CD   A K +L  H+   H+ 
Sbjct: 14  KPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
              V KF C  C      K +L  H+   H  
Sbjct: 40  TENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 62.8 bits (153), Expect = 7e-13
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 25/94 (26%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
               C+ CG +   K +L +H    H           +T A                 F 
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQR-KH----------AETVAALR--------------FP 40

Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTK 272
           C+ C K F +  ++ +H    H  +    +E + 
Sbjct: 41  CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 237 FKCDHCVKSFNQKPNLISHIK--SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIKY 293
            +C+ C  +  QK +L  H +  +       + CE C K F +  ++ +H    H  +  
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 294 TCEVCSK 300
             +  S 
Sbjct: 68  APQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK----YTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
            +CE C  T  QK +L  H +  H        + CE C K + +  ++ +H +  H A  
Sbjct: 8   LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66

Query: 321 YKCADC 326
               + 
Sbjct: 67  LAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 293 YTCEVCSKSYNQVTNLLSHMT--TVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVRL 349
             CE+C  +  Q  +L  H        A   + C  CG+ F +  ++  H    H  + L
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 350 TCRTC 354
             +  
Sbjct: 68  APQES 72

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 62.9 bits (154), Expect = 8e-13
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-----YTCEVCSKSYNQ 304
           +  S     H G K Y C  C KTF QKQ L  H    +         + C  C K++ +
Sbjct: 2   SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTR 59

Query: 305 VTNLLSHMTTVHQAQK-YKCADCGRLF 330
              +  H           +  + G   
Sbjct: 60  RNTMARHADN-CAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 26/97 (26%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
           K + C  C K+F  KQ L  H    +             F                  F 
Sbjct: 14  KPYACSHCDKTFRQKQLLDMH-FKRYHD---------PNFVPAA--------------FV 49

Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTF 274
           C  C K+F ++  +  H      G    + E    + 
Sbjct: 50  CSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 173 GKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTF 218
                   F C +CGK+FT +  +  H      G   ++ +    + 
Sbjct: 40  DPNFVPAAFVCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPSS 85

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           +KCD C  SF  K NL SH K+VH G K Y+C  C   F +  NL +H   IH G K
Sbjct: 18  YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEK 72

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNL 308
           +   H   +    K YKC+ C  +F  K NL SH + +H G K Y C +C   +N+  NL
Sbjct: 4   HHHHH-SHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61

Query: 309 LSHM 312
            +H 
Sbjct: 62  KTHT 65

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 53.6 bits (130), Expect = 1e-09
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 279 NLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTL 336
           +   H   +    K Y C+ C  S+    NL SH T  H  +K Y+C  CG  F +   L
Sbjct: 4   HHHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANL 61

Query: 337 RTHTLSVHSG 346
           +THT  +HSG
Sbjct: 62  KTHT-RIHSG 70

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
           K + CD+C  SF  K NL  H  ++H G +  +C+ C   F    NL  H 
Sbjct: 16  KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 256 IKSVHEGIK-YKCEECTKTFAQKQNLLSHVQ-AIHMGIK-YTCEVCSKSYNQVTNLLSHM 312
           ++   EG   Y+C+ C++ +    N   H   +    +K Y C  C K + +  N+ +H+
Sbjct: 1   MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

Query: 313 TTVHQ 317
             +H+
Sbjct: 61  KIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSV-HEGIK-YKCEECTKTFAQKQNLLSHVQAIH 288
           ++C  C + +    N   H  +     +K Y C  C K F +K N+ +HV+ IH
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHV-NSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGV 235
             + C  C + +T   N   H   S    V+   C FC K F  K N+ AH+    + +
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI-IHKI 66

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
           F C+ C ++F ++ +L  H +S H   K Y C  C + F ++  L+ H Q IH G
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 28/82 (34%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCA 324
           + CE CT+ FA++++L  H    H   K                            Y C 
Sbjct: 3   FVCEVCTRAFARQEHLKRH-YRSHTNEK---------------------------PYPCG 34

Query: 325 DCGRLFAQEHTLRTHTLSVHSG 346
            C R F +   L  H   +HSG
Sbjct: 35  LCNRAFTRRDLLIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNG 234
           + F C+ C ++F  +++L  H    H   +   C  C++ F  +  LI H    H+G
Sbjct: 1   RSFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
            KC  C  S + K  L  H + +H   + +KC  C+    Q  NL  H      G  
Sbjct: 10  EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFHGDM 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
           S        KC EC+ + + K  L  H + IH   + + C  CS    Q +NL  HM  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
               C +C  S + K  L  H   IH   R  KC++C        NL  HM
Sbjct: 8   HPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHM 57

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.5 bits (148), Expect = 5e-12
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 219 AHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQ 276
               +            R +KCD C KSF+   +L  H +  H G K YKC+EC K F Q
Sbjct: 1   GSSGSSGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQ 58

Query: 277 KQNLLSHVQAIHMGIK 292
           + +L+ H   +H G  
Sbjct: 59  RSHLIGH-HRVHTGSG 73

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 275 AQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQ 332
               +     +      + Y C+ C KS++  ++L  H  T H  +K YKC +CG+ F Q
Sbjct: 1   GSSGSSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQ 58

Query: 333 EHTL----RTHT 340
              L    R HT
Sbjct: 59  RSHLIGHHRVHT 70

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 30/89 (33%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
           +++ CD+CGKSF+   +L+ H    H G              KP              +K
Sbjct: 17  RRYKCDECGKSFSHSSDLSKH-RRTHTG-------------EKP--------------YK 48

Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YK 266
           CD C K+F Q+ +LI H   VH G     
Sbjct: 49  CDECGKAFIQRSHLIGH-HRVHTGSGPSS 76

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 210 KCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK 264
            C F  C K F     L  H  S H     ++C H  C K F+    L  H K VH G  
Sbjct: 3   VCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60

Query: 265 -YKCEECTKTFAQKQNLLSHVQAIH 288
             K + C+         L HV   H
Sbjct: 61  CKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGI 291
           + C    C K+F +   L  H +  H     Y+C  E C K F+    L  H + +H G 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGY 59

Query: 292 K-YTCEVCSKSYNQVTNLLSHMTTVH 316
                + CS      T  L H+   H
Sbjct: 60  PCKKDDSCSFVGKTWTLYLKHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQ 319
           Y C  E C K F +   L  H Q  H     Y C  E C K ++  + L  H    H   
Sbjct: 2   YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGY 59

Query: 320 K-YKCADCGRLFAQEHTLRTHTLSVH 344
              K   C  +         H    H
Sbjct: 60  PCKKDDSCSFVGKTWTLYLKHVAECH 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTV 315
                      C KT+ +  +L +H    H G K Y C  + C   + +   L  H    
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK- 59

Query: 316 HQAQK-YKCADCGRLFAQEHTLRTH 339
           H   + ++C  C R F++   L  H
Sbjct: 60  HTGHRPFQCQKCDRAFSRSDHLALH 84

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 57.9 bits (141), Expect = 5e-11
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK-Y 265
               C KT+    +L AH+ + H G + + CD   C   F +   L  H +  H G + +
Sbjct: 9   DYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPF 66

Query: 266 KCEECTKTFAQKQNLLSHVQAIHM 289
           +C++C + F++  +L  H    H 
Sbjct: 67  QCQKCDRAFSRSDHLALH-MKRHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 57.5 bits (140), Expect = 7e-11
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCD--FCDKTFAHKPNLIAHMNSAHNGV 235
                  CGK++T   +L  H+   H G +   CD   C   FA    L  H    H G 
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGH 63

Query: 236 R-FKCDHCVKSFNQKPNLISHIK 257
           R F+C  C ++F++  +L  H+K
Sbjct: 64  RPFQCQKCDRAFSRSDHLALHMK 86

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 57.2 bits (139), Expect = 9e-11
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK 292
                 C K++ +  +L +H++  H G K Y C  + C   FA+   L  H    H G +
Sbjct: 7   TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHR 64

Query: 293 -YTCEVCSKSYNQVTNLLSHMTT 314
            + C+ C +++++  +L  HM  
Sbjct: 65  PFQCQKCDRAFSRSDHLALHMKR 87

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 57.5 bits (140), Expect = 4e-11
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           + C  C K+F++   L+ H + VH G K YKC EC K F+Q   L++H Q IH    
Sbjct: 15  YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSGP 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)

Query: 280 LLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTL- 336
                  IH G K Y C  C K++++ + L+ H   VH  +K YKC +CG+ F+Q   L 
Sbjct: 2   SSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLI 59

Query: 337 ---RTHT 340
              R HT
Sbjct: 60  NHQRIHT 66

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAH 227
           K + C +CGK+F+    L  H   +H G +  KC  C K F+    LI H
Sbjct: 13  KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH 61

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 179 KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHN 233
              PCD   CG+ F+ +Q L +H    H+  +   C    C K+F  K +L  HM   H+
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HS 64

Query: 234 GVR-FKCDHCVKSF 246
             R + C+    S 
Sbjct: 65  DTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 260 HEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCE--VCSKSYNQVTNLLSHMT 313
             G     C    C + F+ +Q L  H +  H+  K ++C    C KS+N   +L  HM 
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 314 TVHQAQK-YKCADCGRLF 330
             H   + Y C   G   
Sbjct: 62  L-HSDTRDYICEFSGPSS 78

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 58.2 bits (140), Expect = 7e-11
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 223 NLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEG-----IKYKCEECTKTFAQK 277
           +   + +      +F+C  C  +++    L  H+                     +  +K
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 278 QNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
           ++LL             C  C  S+  + +L  HM      QK
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRI-----KCDFCDKTFAHKPNLIAHMNSAHN 233
            KF C  C  ++     LT H+N               +    +   K +L+        
Sbjct: 18  SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77

Query: 234 GVRFKCDHCVKSFNQKPNLISHIKSVH 260
               KC +C  SF    +L  H+    
Sbjct: 78  QKVLKCMYCGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 7/99 (7%)

Query: 247 NQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIH-----MGIKYTCEVCSK 300
           +   +   +  S+  G   ++C++C+  +     L  H+                     
Sbjct: 2   SSGSSGKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60

Query: 301 SYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTH 339
           S  +  +LL         +  KC  CG  F     L  H
Sbjct: 61  SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 275 AQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHM-TTVH----QAQKYKCADCGRL 329
           +   +   +        K+ C+ CS +Y+ +  L  HM  T H      +          
Sbjct: 2   SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61

Query: 330 FAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCE 376
             ++ +L        +   L C  CG   +S + L+ H+ +     +
Sbjct: 62  KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 256 IKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQ 304
             S     K Y C+ C K F++  +L  H++ +H   + + C+V     + 
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 229 NSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQ 276
            S+ +  + + C  C K F++  +L  HIK VH   + +KC+      + 
Sbjct: 4   GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQ 332
            +     K Y C+ C K +++  +L  H+  VH +++ +KC       + 
Sbjct: 4   GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
           K + C  CGK F+   +L  H+  +H   R  KC       +
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQ 248
            C  C K F+   +L  H+   H   R  KC   V   + 
Sbjct: 14  ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 314 TVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCG 355
           +     K Y C  CG+ F++   L  H   VH+  R   C+   
Sbjct: 5   SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGI 291
             CD+  C K + +  +L +H+++ H G K YKC  E C   FA+   L  H +  H G 
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGA 73

Query: 292 K-YTCEVCSKSYNQVTNLLSHMTT 314
           K + C VC++S+++  +L  HM  
Sbjct: 74  KPFQCGVCNRSFSRSDHLALHMKR 97

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 245 SFNQKPNLISHIKSVHEGIKYKCE--ECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCS 299
           S       +   +       + C+   CTK + +  +L +H    H G K Y C  E C 
Sbjct: 2   SSGSSGPDLEKRR------IHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCD 54

Query: 300 KSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTH 339
             + +   L  H    H   K ++C  C R F++   L  H
Sbjct: 55  WRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALH 94

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 210 KCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK 264
            CD+  C K +    +L AH+ + H G + +KC    C   F +   L  H +  H G K
Sbjct: 17  YCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAK 74

Query: 265 -YKCEECTKTFAQKQNLLSHV 284
            ++C  C ++F++  +L  H+
Sbjct: 75  PFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 167 TTGHRGGKGPPVKKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKC--DFCDKTFAHK 221
           ++G  G      +   CD   C K +T   +L  H+   H G +  KC  + CD  FA  
Sbjct: 2   SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARS 60

Query: 222 PNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIK 257
             L  H    H G + F+C  C +SF++  +L  H+K
Sbjct: 61  DELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMK 96

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 53.8 bits (128), Expect = 5e-09
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 186 CGKSFTLKQNLTYHVNSIHLGVRIKCD----FCDKTFAHKPNLIAHMNSAHNGVRFKCDH 241
                TL++   YH  +      I+        +     + + +  + ++    +F C  
Sbjct: 20  IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79

Query: 242 CVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG 290
           C+  F+   +L  HI+         C  C K F    + L HV   H  
Sbjct: 80  CLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHNI 126

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE 296
                 ++   +   L    K +   I        +    + + L  + A     ++ C 
Sbjct: 20  IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYRLLASKAISQFVCP 78

Query: 297 VCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR 348
           +C   ++   +L  H+          C  C + F    +   H    H+   
Sbjct: 79  LCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKKHNICV 128

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 5/118 (4%)

Query: 258 SVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQ 317
           S H+GI        +   +   L    + +   I  T  + +      ++ L  +     
Sbjct: 15  SNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESSYLYRLLASKA 71

Query: 318 AQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC 375
             ++ C  C   F+   +L+ H           C  C     S  +   HV + H  C
Sbjct: 72  ISQFVCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHNIC 127

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 177 PVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVR 236
            + +F C  C   F+   +L  H+          C  C K F    + + H+   HN   
Sbjct: 71  AISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNICV 128

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 51.4 bits (122), Expect = 2e-08
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 226 AHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQ 285
           +  +   N   ++C  C    +      SH +         C  C+  F   +    H +
Sbjct: 6   SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEH-E 62

Query: 286 AIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ 319
           +     K TC  C +++    ++  H   VH   
Sbjct: 63  SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 199 HVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKS 258
             + +      +C  C+   +      +H     N     C +C   F        H +S
Sbjct: 7   GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEH-ES 63

Query: 259 VHEGIKYKCEECTKTFAQKQNLLSHVQAIH 288
             E  K  C EC +TF    ++  H   +H
Sbjct: 64  KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
           + + C  C    +       H           C +C   F   P L     S     +  
Sbjct: 15  EVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRF-FSPELKQEHESKCEYKKLT 71

Query: 239 CDHCVKSFNQKPNLISHIKSVH 260
           C  C+++F    ++  H   VH
Sbjct: 72  CLECMRTFKSSFSIWRHQVEVH 93

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 254 SHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMT 313
           S    V     Y+C  C    +      SH +         C  CS  +        H +
Sbjct: 6   SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHES 63

Query: 314 TVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS 345
              + +K  C +C R F    ++  H + VH+
Sbjct: 64  K-CEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 46.8 bits (110), Expect = 7e-07
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 281 LSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHT 340
            S    +     Y C +C+   + +    SH      A    C  C   F      + H 
Sbjct: 5   SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHE 62

Query: 341 LSVHSGVRLTCRTCGLFCDSKRALTAHVREAH 372
            S     +LTC  C     S  ++  H  E H
Sbjct: 63  -SKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 176 PPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIK---------CDFCDKTFAHKPNLIA 226
                 P   C ++F+    L  HV   H+G   +         C    K+F  K  L+ 
Sbjct: 21  EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80

Query: 227 HMNSAHNGVR-FKC 239
           H+   H G +    
Sbjct: 81  HIRV-HTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFK---------CDHCVKSFNQKPNLISHIKSVH 260
               CD+TF+    L+ H+   H G   +         C    KSF  K  L++HI+ VH
Sbjct: 27  PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VH 85

Query: 261 EGIK-YKC 267
            G K    
Sbjct: 86  TGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYK---------CEECTKTFAQKQNLLSHVQAI 287
                C ++F+    L++H+   H G   +         C    K+F  K  L++H++ +
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84

Query: 288 HMGIK-YTC 295
           H G K    
Sbjct: 85  HTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK----YTCE-----VCSKSYNQVTNLLSHMTTV 315
              + C +TF+    L++HV   H+G      + C         KS+     L++H+   
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV- 84

Query: 316 HQAQK-YKCA 324
           H  +K    +
Sbjct: 85  HTGEKSGPSS 94

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 6/71 (8%)

Query: 249 KPNLISHIKS-VHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYN 303
           +P+ ++++ + V   ++ Y C  E C + F++   L  H++ IH G K + C +C ++++
Sbjct: 2   EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFS 60

Query: 304 QVTNLLSHMTT 314
           +  +L +H+ T
Sbjct: 61  RSDHLTTHIRT 71

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHV 284
           + C    C + F++   L  HI+  H G K ++C  C + F++  +L +H+
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHI 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 72/250 (28%)

Query: 93  EYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFN 152
           E L I++ F+ + +KTE  Q +       +  D L     V  +Y  V+           
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVS----------- 132

Query: 153 RSQFEKTFQN--YSMTTTG----HRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
           R Q     +     +          G  G           GK+  +          + L 
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLID-GVLG----------SGKT-WV-------ALDVCLS 173

Query: 207 VRIKCDFCDKTF------AHKPN-LIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSV 259
            +++C    K F       + P  ++  +                ++  + +  S+IK  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHSSNIKLR 226

Query: 260 HEGIKYKCEECTKTFAQKQN---LL--------SHVQAIHMGIKYTCE--VCSKSYNQVT 306
              I+    E  +    K     LL            A    +   C+  + ++ + QVT
Sbjct: 227 IHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLS--CKILLTTR-FKQVT 278

Query: 307 NLLSHMTTVH 316
           + LS  TT H
Sbjct: 279 DFLSAATTTH 288

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 52/364 (14%), Positives = 110/364 (30%), Gaps = 97/364 (26%)

Query: 36  TGQVKSEYNYYQLSSDEKFEIL-KSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEY 94
           T  +  +++   L+ DE   +L K +           LP      +    P  L   AE 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTN----PRRLSIIAES 336

Query: 95  LEIHFCFVYTWVKTEPNQTNH---------PPSETEDSDDPLGESMVVEPEYTPVT---- 141
           +         W     ++             P+E       + + + V P    +     
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK----MFDRLSVFPPSAHIPTILL 392

Query: 142 QIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVN 201
            +     ++ +          YS+            V+K P +            T  + 
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSL------------VEKQPKE-----------STISIP 429

Query: 202 SIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLI-SHIKSVH 260
           SI+L +++K +  ++   H+ +++ H N       F  D  +           SHI   H
Sbjct: 430 SIYLELKVKLE--NEYALHR-SIVDHYNIPKT---FDSDDLIP--PYLDQYFYSHI-GHH 480

Query: 261 EGIKYKCEECTKTFAQKQNLLSHV----QAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVH 316
                  E       ++  L   V    + +   I++     + S   + N L       
Sbjct: 481 ---LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTL------Q 525

Query: 317 QAQKYK---CADCGRL---------F---AQEHTLRT-HTLSVHSGVRLTCRTCGLFCDS 360
           Q + YK   C +  +          F    +E+ + + +T  +     L      +F ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA--LMAEDEAIFEEA 583

Query: 361 KRAL 364
            + +
Sbjct: 584 HKQV 587

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG 346
           KY CE C     + + L  H+ T    + Y C  C   F  +  L  H +   + 
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 264 KYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
           KY CEEC     +   L  H++  H  ++ Y C  C+ S+    NL  HM +
Sbjct: 1   KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           ++ C+ C     +   L  HI++  +   Y C  C  +F  K NL  H        K
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 180 KFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNS 230
           K+ C++CG        L  H+ + H  VR   C +C+ +F  K NL  HM S
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 208 RIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKS 258
           +  C+ C         L  H+ +  +   + C +C  SF  K NL  H+KS
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           S   S   G K YKCEEC K F  +++L +H   +H G K     
Sbjct: 2   SS-GSSGTGEKPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S     K YKCE+C K + ++ NL  H Q +HMG K    
Sbjct: 2   SS-GSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K YKCE+C K +  K NL  H Q +H G +    
Sbjct: 4   GSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
           +KC+ C K +N K NL  H + VH G +    
Sbjct: 13  YKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S   G+  YKC +C K+F+ K  LL H Q +H   K    
Sbjct: 2   SS-GSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K YKC+ C K F+Q  +L +H Q +H G K    
Sbjct: 4   GSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 9e-06
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K +KC+ C K+F  +  L  H   +H   K     
Sbjct: 4   GSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
           FKCD C KSF  +  L  H   VH   K     
Sbjct: 13  FKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F    NL +H Q IH G K     
Sbjct: 4   GSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           S   S   G K Y+C EC K F  + NL +H Q IH G K     
Sbjct: 2   SS-GSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPS 44

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K +KCEEC K F Q   L SH Q +H G K    
Sbjct: 4   GSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y CEEC K F     L  H Q IH G K     
Sbjct: 4   GSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G + +KC EC K F ++ +L  H   +H   K    
Sbjct: 4   GSSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSREKSSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
              G K +KCEEC K F       SH Q  H G K     
Sbjct: 6   SGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G+K Y C EC K F+   +L +H Q IH G K     
Sbjct: 4   GSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGPS 44

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K Y+C EC K FAQK NL  H Q IH G K    
Sbjct: 4   GSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGP 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S   G K +KC EC   F+Q  +L  H Q +H+G K    
Sbjct: 2   SS-GSSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGP 43

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K Y+C EC K F Q  +L+ H +  H G K    
Sbjct: 4   GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
           ++C  C K+F Q  +LI H +  H G K    
Sbjct: 13  YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S  EG K Y+C EC K+F+    L  H    H   K    
Sbjct: 2   SS-GSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S   G K YKC +C K+F  K  L  H Q  H G +    
Sbjct: 2   SS-GSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K ++CEEC K F Q  +L SH Q +H G K    
Sbjct: 4   GSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
              G K ++C EC K F  K NL+ H Q  H G K     
Sbjct: 6   SGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y C EC K+F QK +L  H + IH G K     
Sbjct: 4   GSSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F++   L  H Q IH G K     
Sbjct: 4   GSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 223 NLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK----YKCEECTKTFAQKQ 278
           +   +  +      ++C +C            H+ S H  +     Y C EC     +  
Sbjct: 5   HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64

Query: 279 NLLSHVQAIHMGIKYTCEVCSKSYNQVT 306
            L  H    H G +       K  NQ  
Sbjct: 65  ALSEHNLKYHPGEENFKLTMVKRNNQTI 92

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 279 NLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVH----QAQKYKCADCGRLFAQEH 334
           +   + Q   +   Y C+ C+     +     H+ + H        Y C +C  L  +  
Sbjct: 5   HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64

Query: 335 TLRTHTLSVHSG 346
            L  H L  H G
Sbjct: 65  ALSEHNLKYHPG 76

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR----FKCDHCVKSFNQKPNLISHIKSVHEG 262
           +C +C            H++S H  V     + C  C     +   L  H    H G
Sbjct: 20  ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 306 TNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT----CRTCGLFCDSK 361
            +   +         Y+C  C       +    H  S H  V L     C  C       
Sbjct: 4   HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63

Query: 362 RALTAHVREAHPGCE 376
            AL+ H  + HPG E
Sbjct: 64  DALSEHNLKYHPGEE 78

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K + C  C K F+ K  LL H Q  H   K    
Sbjct: 2   SSGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K YKC+ C K+F    +L  H Q IH G K    
Sbjct: 4   GSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K +KC EC KTF Q  +L  H Q IH G K    
Sbjct: 4   GSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIHTGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K YKC EC K F Q  +L +H   IH G K    
Sbjct: 4   GSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F+Q   L  H Q IH G K     
Sbjct: 4   GSSGTGEKPYKCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   G K YKC EC K + ++ +L  H Q +H G K    
Sbjct: 5   SSGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGP 43

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F Q  +L+ H + IH G K     
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F Q  +L  H + IH G K     
Sbjct: 4   GSSGTGKKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y C+EC K+F     LL H Q +H G K     
Sbjct: 4   GSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y C EC KTF+QK  L +H Q  H G K     
Sbjct: 4   GSSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTGEKPSGPS 44

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G   + C EC K F  K NL+ H Q IH G +    
Sbjct: 6   SGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           S   G K Y C EC K F  + NL+ H Q IH   K     
Sbjct: 5   SSGTGEKPYICAECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F Q  +L +H Q IH G+K     
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K ++C  C K+F  K NL++H Q IH G K    
Sbjct: 6   SGTGQKPFECTHCGKSFRAKGNLVTH-QRIHTGEKSGPS 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K Y+C EC K F  K NL+ H Q  H G    + 
Sbjct: 4   GSSGTGEKPYECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F Q  +L  H + IH G K     
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K +KC EC K F+++  L  H   +H G K    
Sbjct: 6   SGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F +  +L  H Q IH G K     
Sbjct: 4   GSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F +  +L  H + IH G +     
Sbjct: 4   GSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y+C+ C K F+   +L  H Q +H G K     
Sbjct: 4   GSSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y+C EC K F+Q   L  H Q +H G K     
Sbjct: 4   GSSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K +KC EC K++ Q+ +L  H Q +H G K    
Sbjct: 4   GSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGP 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F     L  H Q IH G K     
Sbjct: 4   GSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G + +KC EC K+F Q  +L+ H Q IH G K     
Sbjct: 4   GSSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           S   S   G K YKC EC K F    +   H Q +H G +     
Sbjct: 2   SS-GSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S   G + Y C EC K F +  +L+ H    H   K    
Sbjct: 2   SS-GSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFREKSSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K YKC EC K F Q  +L  H + +H G K     
Sbjct: 4   GSSGTGEKPYKCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G+K Y C +C KTF+ K  L+ H Q  H G+K    
Sbjct: 6   SGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGP 43

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           S   G K ++C EC K F +K  L  H Q IH G K     
Sbjct: 5   SSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K +KC+EC K F Q  +L SH   IH G K     
Sbjct: 4   GSSGSGEKPFKCKECGKAFRQNIHLASH-LRIHTGEKPSGPS 44

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G + ++C +C K F Q  N + H + IH G K    
Sbjct: 4   GSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G + Y C  C K F  + NL+ H Q IH G K    
Sbjct: 6   SGTGERPYICTVCGKAFTDRSNLIKH-QKIHTGEKPSGP 43

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G + Y+C EC K F QK  L  H Q IH G K    
Sbjct: 4   GSSGTGERHYECSECGKAFIQKSTLSMH-QRIHRGEKPSGP 43

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
           S   S   G K Y C+EC K+F++   LL H + +H G K    
Sbjct: 2   SS-GSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSGEKPSGP 43

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G   Y+C EC K F +K  L+SH Q  H G    + 
Sbjct: 2   SSGSSGENPYECSECGKAFNRKDQLISH-QRTHAGESGPSS 41

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K YKC EC K F  + +L  H QA H G K    
Sbjct: 4   GSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K Y+C +C K+F +K  L  H Q IH G      
Sbjct: 6   SGTGEKPYECSDCGKSFIKKSQLHVH-QRIHTGENPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
              G K Y+C  C K F+ +Q+L  H Q IH G K     
Sbjct: 6   SGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y+C+ C+K F QK +L  H Q  H G K     
Sbjct: 4   GSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y+C+EC KTF Q  +L  H + +H G +     
Sbjct: 4   GSSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSGPS 44

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K YKC +C K F +K  L  H Q  H G +    
Sbjct: 6   SGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K  KC EC K F  K  L+ H Q  H+  K    
Sbjct: 4   GSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G   Y+C EC K F++K  L+SH Q  H G    + 
Sbjct: 4   GSSGTGENPYECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y+C +C K F+ + +L +H QAIH G K     
Sbjct: 4   GSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
              G K ++C EC K+F+    L +H Q IH G K     
Sbjct: 6   SGTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPSGPS 44

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
            S     K ++C EC + F  K +L  H Q IH G K
Sbjct: 4   GSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTGEK 39

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y C EC K F+ K  L+ H    H G K     
Sbjct: 4   GSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGPS 44

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           S   S   G K + C+EC K F     L  H Q +HMG K
Sbjct: 2   SS-GSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEK 39

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K Y C+ C K F     L+ H Q IH G K    
Sbjct: 4   GSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIHTGEKPSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G   Y+C EC K F++K  L+SH Q  H G K    
Sbjct: 6   SGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K YKC+ C K F    +L+ H  ++H G +    
Sbjct: 4   GSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G + Y+C EC K FA+K  L+ H Q IH G K    
Sbjct: 6   SGTGERHYECSECGKAFARKSTLIMH-QRIHTGEKPSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K + C +C K F+    L  H + IH G K     
Sbjct: 4   GSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K Y+C+EC K F+Q  +L+ H Q +H G K    
Sbjct: 6   SGTGEKPYECKECGKAFSQTTHLIQH-QRVHTGEKPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 3/42 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
            S   G K Y C  C K F    +L  H   +H         
Sbjct: 4   GSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K ++C EC K+F+    L+ H Q IH G      
Sbjct: 6   SGTGEKPHECRECGKSFSFNSQLIVH-QRIHTGENPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G K Y+C EC K F  K  L+ H +  H G+   + 
Sbjct: 4   GSSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
              G K Y+C  C K+F +K  L  H Q IH G K    
Sbjct: 6   SGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G + Y+C EC K F  K +L+ H +  H G K    
Sbjct: 4   GSSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
              G K Y+C++C K F+QK +L+ H   +H G  
Sbjct: 5   SSGGEKPYRCDQCGKAFSQKGSLIVH-IRVHTGSG 38

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
            S   G+K Y C EC K F  K  L+ H    H G    + 
Sbjct: 4   GSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
            S   G + Y+C+EC K+F QK +L  H + IH G  
Sbjct: 2   SSGSSGQRVYECQECGKSFRQKGSLTLH-ERIHTGSG 37

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
            S   G K Y C EC +TF+    L+ H Q +H  
Sbjct: 2   SSGSSGEKPYSCAECKETFSDNNRLVQH-QKMHTV 35

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
                G K Y CE C   F   Q L SH++ IH G    +
Sbjct: 3   SGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSS 41

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
                G K YKCE C   F Q  +L +H   IH G  
Sbjct: 3   SGSSGGEKPYKCETCGARFVQVAHLRAH-VLIHTGSG 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.87
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.72
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.7
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.67
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.59
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.58
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.58
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.57
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.56
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.53
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.53
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.5
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.49
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.45
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.44
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.43
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.43
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.39
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.39
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.39
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.38
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.37
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.37
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.35
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.35
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.35
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.34
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.34
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.32
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.32
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.32
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.3
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.29
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.29
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.27
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.23
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.2
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.2
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.12
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.1
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.07
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.0
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.98
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.96
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.96
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.94
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.94
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.93
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.92
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.92
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.92
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.9
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.87
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.86
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.86
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.86
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.85
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.85
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.84
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.81
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.78
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.78
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.77
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.77
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.76
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.74
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.74
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.74
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.73
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.73
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.72
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.71
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.71
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.7
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.69
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.67
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.67
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.66
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.66
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.66
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.66
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.65
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.64
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.64
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.63
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.63
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.62
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.61
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.61
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.61
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.6
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.6
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.6
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.59
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.59
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.58
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.55
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.55
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.55
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.55
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.54
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.54
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.53
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.53
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.52
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.51
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.5
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.49
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.48
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.45
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.45
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.36
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.36
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.3
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.24
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.22
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.17
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.15
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.13
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.11
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.1
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.09
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.03
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.03
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.03
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.96
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.95
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.93
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.9
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.89
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.89
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
1v65_A	64	Riken cDNA 2610044O15; transcriptional repressor,	97.86
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.85
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.81
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.8
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.8
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.77
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.74
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.71
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.71
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.71
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.71
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.7
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.69
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.69
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.69
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.68
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.66
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.66
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.65
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.64
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.62
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.6
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.6
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.59
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.59
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.58
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.57
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.56
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.55
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.54
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.54
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.54
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.54
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.53
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.67
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.66
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.66
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.51
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.65
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.5
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.49
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.54
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.47
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.35
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.21
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.17
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.11
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.45
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.33
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.29
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.94
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.44
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.69
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.07
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.65
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.03
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.28
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.91
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	85.24
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	81.7
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.21

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=5.5e-37  Score=274.42  Aligned_cols=184  Identities=28%  Similarity=0.516  Sum_probs=122.7

Q ss_pred             HHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhccCcceecCccccc
Q psy2838         194 QNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKT  273 (458)
Q Consensus       194 ~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~  273 (458)
                      ..|..|++.+.++++|.|.+|++.|.+...|..|++.|+++++|.|..|++.|.+...|..|++.|++.++|.|..|++.
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            45666776666667777888887777777788887777777778888888888888888888877777778888888888


Q ss_pred             ccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCc
Q psy2838         274 FAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRT  353 (458)
Q Consensus       274 f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~  353 (458)
                      |.+...|..|++.++...+|.|.+|++.|.+...|..|+++|+++++|.|+.|++.|.+...|..|++.|++..+|.|.+
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  166 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE  166 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCC
Confidence            88888888888777777778888888888888888888888888888888888888888888888888777777788888


Q ss_pred             CcccCCCHHHHHHHHHHhCCCCCc
Q psy2838         354 CGLFCDSKRALTAHVREAHPGCEY  377 (458)
Q Consensus       354 C~~~f~~~~~L~~H~~~~h~~~~~  377 (458)
                      |++.|.++..|..|++.|++++||
T Consensus       167 C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          167 CGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             TCCEESSHHHHHHHHTTC------
T ss_pred             CCCccCCHHHHHHHHHhcCCCCCC
Confidence            888888888888888888776554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.2e-35  Score=265.66  Aligned_cols=177  Identities=31%  Similarity=0.581  Sum_probs=148.4

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhh
Q psy2838         173 GKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNL  252 (458)
Q Consensus       173 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L  252 (458)
                      ..+.+.++|.|.+|++.|.+...|..|++.+++..+|.|..|++.|.+...|..|++.|+++++|.|..|++.|.+...|
T Consensus        14 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   93 (190)
T 2i13_A           14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL   93 (190)
T ss_dssp             -----------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             hhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHH
Confidence            34567889999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             hhccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCC
Q psy2838         253 ISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQ  332 (458)
Q Consensus       253 ~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~  332 (458)
                      ..|++.|++.++|.|..|++.|.+...|..|++.+++.++|.|.+|++.|.+...|..|+++|+++++|.|+.|++.|.+
T Consensus        94 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~  173 (190)
T 2i13_A           94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR  173 (190)
T ss_dssp             HHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS
T ss_pred             HHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCcc
Q psy2838         333 EHTLRTHTLSVHSGVRL  349 (458)
Q Consensus       333 ~~~L~~H~~~~h~~~~~  349 (458)
                      ...|..|++.|+++++|
T Consensus       174 ~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          174 RDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHHHHHTTC------
T ss_pred             HHHHHHHHHhcCCCCCC
Confidence            99999999988887654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=6e-31  Score=235.10  Aligned_cols=163  Identities=25%  Similarity=0.512  Sum_probs=106.1

Q ss_pred             cccc--ccCccccCChHHHHHHHHHhcCCceeec--CccccccCCchhhhhccchhccCcceecC--cccccccCHHHHH
Q psy2838         208 RIKC--DFCDKTFAHKPNLIAHMNSAHNGVRFKC--DHCVKSFNQKPNLISHIKSVHEGIKYKCE--ECTKTFAQKQNLL  281 (458)
Q Consensus       208 ~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~~~~~~~~~C~--~C~~~f~~~~~L~  281 (458)
                      +|.|  ..|++.|.+...|..|+++|+++++|.|  ..|++.|.+...|..|+++|++.++|.|.  .|++.|.+...|.
T Consensus        12 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   91 (190)
T 1tf6_A           12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMK   91 (190)
T ss_dssp             CCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHH
T ss_pred             ceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHH
Confidence            3555  3455555555555555555555555555  45555555555555555555555566666  5666666666666


Q ss_pred             HHHHHhh--cCceeec--CccCcccCChhHHHHHHhhhccCccccCcc--ccccCCCHHHHHHHHhhccCCCccccCc--
Q psy2838         282 SHVQAIH--MGIKYTC--EVCSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRLFAQEHTLRTHTLSVHSGVRLTCRT--  353 (458)
Q Consensus       282 ~H~~~~h--~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~~--  353 (458)
                      .|++..|  ...+|.|  ..|++.|.+...|..|+++|+++++|.|+.  |++.|.+...|.+|++.|++   |.|..  
T Consensus        92 ~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~  168 (190)
T 1tf6_A           92 KHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDD  168 (190)
T ss_dssp             HHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTT
T ss_pred             HHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCC
Confidence            6664444  2345777  667777777777777777777777777866  88888887788888766554   77777  


Q ss_pred             -CcccCCCHHHHHHHHHHhCC
Q psy2838         354 -CGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       354 -C~~~f~~~~~L~~H~~~~h~  373 (458)
                       |++.|.+...|.+|++.||+
T Consensus       169 ~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          169 SCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             TCCCCCSCHHHHHHHHTTCC-
T ss_pred             cCCCccccHHHHHHHHHhhcC
Confidence             88888888888888777765

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=3.4e-30  Score=230.19  Aligned_cols=166  Identities=24%  Similarity=0.473  Sum_probs=154.9

Q ss_pred             CCCcccc--cccccccCCHHHHHHHHHhhcCCCcccc--ccCccccCChHHHHHHHHHhcCCceeecC--ccccccCCch
Q psy2838         177 PVKKFPC--DQCGKSFTLKQNLTYHVNSIHLGVRIKC--DFCDKTFAHKPNLIAHMNSAHNGVRFKCD--HCVKSFNQKP  250 (458)
Q Consensus       177 ~~k~~~C--~~C~~~f~~~~~L~~H~~~~h~~~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~--~C~~~f~~~~  250 (458)
                      ..++|.|  ..|++.|.+...|..|++.|+++.+|.|  ..|++.|.+...|..|+++|+++++|.|.  .|++.|.+..
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHH
Confidence            4678999  6899999999999999999999999999  88999999999999999999999999999  8999999999


Q ss_pred             hhhhccchhc--cCcceec--CcccccccCHHHHHHHHHHhhcCceeecCc--cCcccCChhHHHHHHhhhccCccccCc
Q psy2838         251 NLISHIKSVH--EGIKYKC--EECTKTFAQKQNLLSHVQAIHMGIKYTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCA  324 (458)
Q Consensus       251 ~L~~H~~~~~--~~~~~~C--~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~  324 (458)
                      .|..|++..|  +.++|.|  ..|++.|.+...|..|++.|++.++|.|++  |++.|.+...|..|+++|++   |.|.
T Consensus        89 ~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~  165 (190)
T 1tf6_A           89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK  165 (190)
T ss_dssp             HHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCC
T ss_pred             HHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCC
Confidence            9999994445  4589999  899999999999999999888888999988  99999999999999999988   9999


Q ss_pred             c---ccccCCCHHHHHHHHhhccC
Q psy2838         325 D---CGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       325 ~---C~~~f~~~~~L~~H~~~~h~  345 (458)
                      .   |++.|.+...|..|++.||+
T Consensus       166 ~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          166 KDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             STTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             CCCcCCCccccHHHHHHHHHhhcC
Confidence            9   99999999999999988875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=2.7e-26  Score=197.76  Aligned_cols=143  Identities=22%  Similarity=0.452  Sum_probs=86.7

Q ss_pred             ccccccCccccCChHHHHHHHH---HhcCCceeecCccccccCCchhhhhccchhccCcceecCcccccccCHHHHHHHH
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMN---SAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~---~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +|.|..|++.|.+...|..|++   +|.+.++|.|.+|+                       |..|++.|.+...|..|+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~-----------------------C~~c~~~f~~~~~l~~H~   59 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG-----------------------CSRELRPFKAQYMLVVHM   59 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT-----------------------CTTTTCCCSSHHHHHHHT
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC-----------------------ccchhhhhhhHHHHHHHH
Confidence            4566666666666666666665   34555666666542                       444556666666666666


Q ss_pred             HHhhcCceeecCc--cCcccCChhHHHHHHhhhccCccccCcc--ccccCCCHHHHHHHH-hhccCCCccccCc--Cccc
Q psy2838         285 QAIHMGIKYTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRLFAQEHTLRTHT-LSVHSGVRLTCRT--CGLF  357 (458)
Q Consensus       285 ~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~-~~~h~~~~~~C~~--C~~~  357 (458)
                      +.+++.++|.|.+  |++.|.+...|..|+++|+++++|.|+.  |++.|.+...|..|+ +.|.+..+|.|.+  |++.
T Consensus        60 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~  139 (155)
T 2gli_A           60 RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKR  139 (155)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCE
T ss_pred             HhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccc
Confidence            5555555566653  6666666666666666666666666665  666666666666665 3444445566655  6666


Q ss_pred             CCCHHHHHHHHHHhCC
Q psy2838         358 CDSKRALTAHVREAHP  373 (458)
Q Consensus       358 f~~~~~L~~H~~~~h~  373 (458)
                      |.++..|..|++.||+
T Consensus       140 f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          140 YTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             ESSHHHHHHHHHHSCC
T ss_pred             cCCHHHHHHHHHhhcC
Confidence            6666666666666653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=6.9e-26  Score=195.18  Aligned_cols=144  Identities=24%  Similarity=0.513  Sum_probs=107.1

Q ss_pred             CcccccccccccCCHHHHHHHHHh---hcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhc
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVNS---IHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISH  255 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~~---~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  255 (458)
                      .+|.|..|++.|.+...|..|++.   +.+..+|.|.+|+                       |..|++.|.+...|..|
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~-----------------------C~~c~~~f~~~~~l~~H   58 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG-----------------------CSRELRPFKAQYMLVVH   58 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT-----------------------CTTTTCCCSSHHHHHHH
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC-----------------------ccchhhhhhhHHHHHHH
Confidence            478999999999999999999984   4456679998764                       66666666666666666


Q ss_pred             cchhccCcceecCc--ccccccCHHHHHHHHHHhhcCceeecCc--cCcccCChhHHHHHH-hhhccCccccCcc--ccc
Q psy2838         256 IKSVHEGIKYKCEE--CTKTFAQKQNLLSHVQAIHMGIKYTCEV--CSKSYNQVTNLLSHM-TTVHQAQKYKCAD--CGR  328 (458)
Q Consensus       256 ~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~-~~h~~~~~~~C~~--C~~  328 (458)
                      +++|++.++|.|.+  |++.|.+...|..|++.|++.++|.|++  |++.|.+...|..|+ ++|.++++|.|..  |++
T Consensus        59 ~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~  138 (155)
T 2gli_A           59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK  138 (155)
T ss_dssp             THHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCC
T ss_pred             HHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcc
Confidence            66666666666764  7777777777777776666666677776  777777777777777 6777777777776  777


Q ss_pred             cCCCHHHHHHHHhhccC
Q psy2838         329 LFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       329 ~f~~~~~L~~H~~~~h~  345 (458)
                      .|.+...|..|++.+|+
T Consensus       139 ~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          139 RYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             EESSHHHHHHHHHHSCC
T ss_pred             ccCCHHHHHHHHHhhcC
Confidence            77777777777777664

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=3.3e-22  Score=165.14  Aligned_cols=114  Identities=26%  Similarity=0.488  Sum_probs=77.6

Q ss_pred             cCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhh---hccCccccCccccccCCCHHHHH
Q psy2838         261 EGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTT---VHQAQKYKCADCGRLFAQEHTLR  337 (458)
Q Consensus       261 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~---h~~~~~~~C~~C~~~f~~~~~L~  337 (458)
                      +.++|.|..|++.|.+...|..|++.++..++|.|.+|++.|.+...|..|++.   +.++++|.|..|++.|.+...|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH
Confidence            345666666666666666666666666655666666666666666666666664   34566777777777777777777


Q ss_pred             HHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         338 THTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       338 ~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      .|++.|+++.+|.|.+|++.|.++..|.+|++.+|.+
T Consensus        84 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           84 LHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            7777776666777777777777777777777766654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=3.8e-22  Score=164.77  Aligned_cols=114  Identities=29%  Similarity=0.543  Sum_probs=84.6

Q ss_pred             CCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHh---cCCceeecCccccccCCchhhh
Q psy2838         177 PVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSA---HNGVRFKCDHCVKSFNQKPNLI  253 (458)
Q Consensus       177 ~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h---~~~~~~~C~~C~~~f~~~~~L~  253 (458)
                      +.++|.|.+|++.|.+...|..|++.|+...+|.|.+|++.|.+...|..|++.+   .+.++|.|.+|++.|.+...|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH
Confidence            4567888888888888888888888777777888888888888888888888753   4556677777777777777777


Q ss_pred             hccchhccCcceecCcccccccCHHHHHHHHHHhhcC
Q psy2838         254 SHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG  290 (458)
Q Consensus       254 ~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  290 (458)
                      .|+++|+++++|.|.+|++.|.+...|..|++.+|.+
T Consensus        84 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           84 LHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            7777666666777777777777777777776555544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=173.16  Aligned_cols=121  Identities=20%  Similarity=0.398  Sum_probs=103.6

Q ss_pred             cCcceecCcccccccCHHHHHHHHHHhhcCce---------eecCccCcccCChhHHHHHHhhhccCccccCcc--cccc
Q psy2838         261 EGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK---------YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRL  329 (458)
Q Consensus       261 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~---------~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~  329 (458)
                      ....|.|..|++.|.+...|..|++.+|...+         |.|.+|++.|.+...|..|+++|+++++|.|..  |++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence            34678888888888888888888876555432         789999999999999999999999999999988  9999


Q ss_pred             CCCHHHHHHHHhhccCCCccccCc--CcccCCCHHHHHHHHHHhCCCCCcccCC
Q psy2838         330 FAQEHTLRTHTLSVHSGVRLTCRT--CGLFCDSKRALTAHVREAHPGCEYKKRG  381 (458)
Q Consensus       330 f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~~~~  381 (458)
                      |.+...|.+|++.|++..+|.|.+  |++.|.++..|.+|++.|+++++|.|.+
T Consensus       102 f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~g  155 (155)
T 2rpc_A          102 FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG  155 (155)
T ss_dssp             ESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSCC
T ss_pred             cCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            999999999988888888899997  9999999999999999999998888853

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.87  E-value=1.2e-22  Score=169.47  Aligned_cols=111  Identities=21%  Similarity=0.353  Sum_probs=96.4

Q ss_pred             hhhhccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccC
Q psy2838         251 NLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLF  330 (458)
Q Consensus       251 ~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f  330 (458)
                      .+..|.+++.|+++|.|.+|++.|.+...|..|++.|.+.++|.|.+|++.|.+...|..|+++|+++++|.|+.|++.|
T Consensus         9 h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F   88 (133)
T 2lt7_A            9 HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF   88 (133)
T ss_dssp             CSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred             HHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCc
Confidence            34555566778899999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhccCCC------ccccCcCcccCCCH
Q psy2838         331 AQEHTLRTHTLSVHSGV------RLTCRTCGLFCDSK  361 (458)
Q Consensus       331 ~~~~~L~~H~~~~h~~~------~~~C~~C~~~f~~~  361 (458)
                      .+...|..|++.+|++.      .|.|..|++.|...
T Consensus        89 ~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           89 INYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             SSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             CCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            99999999999988764      47799999988754

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=5.5e-22  Score=162.58  Aligned_cols=111  Identities=21%  Similarity=0.449  Sum_probs=71.7

Q ss_pred             cCcceecCc--ccccccCHHHHHHHHHHhhcCceeecC--ccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHH
Q psy2838         261 EGIKYKCEE--CTKTFAQKQNLLSHVQAIHMGIKYTCE--VCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTL  336 (458)
Q Consensus       261 ~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L  336 (458)
                      ++++|.|.+  |++.|.+...|..|++.++..++|.|.  .|++.|.+...|..|+++|+++++|.|..|++.|.+...|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   82 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL   82 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHH
Confidence            345666665  666666666666666655555666666  4666666666666666666666666666666666666666


Q ss_pred             HHHHhhccCCCcccc--CcCcccCCCHHHHHHHHHHh
Q psy2838         337 RTHTLSVHSGVRLTC--RTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       337 ~~H~~~~h~~~~~~C--~~C~~~f~~~~~L~~H~~~~  371 (458)
                      ..|++.|+++.+|.|  +.|++.|.++..|.+|++.|
T Consensus        83 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            666666666666666  56666666666666666543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=4.6e-22  Score=163.05  Aligned_cols=110  Identities=21%  Similarity=0.504  Sum_probs=68.3

Q ss_pred             CCceeecCc--cccccCCchhhhhccchhccCcceecC--cccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHH
Q psy2838         233 NGVRFKCDH--CVKSFNQKPNLISHIKSVHEGIKYKCE--ECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNL  308 (458)
Q Consensus       233 ~~~~~~C~~--C~~~f~~~~~L~~H~~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L  308 (458)
                      ++++|.|.+  |++.|.+...|..|++.|++.++|.|.  .|++.|.+...|..|++.++..++|.|.+|++.|.+...|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   82 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL   82 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHH
Confidence            345555554  555555555555555555555566665  4666666666666666655555566666666666666666


Q ss_pred             HHHHhhhccCccccC--ccccccCCCHHHHHHHHhh
Q psy2838         309 LSHMTTVHQAQKYKC--ADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       309 ~~H~~~h~~~~~~~C--~~C~~~f~~~~~L~~H~~~  342 (458)
                      ..|+++|+++++|.|  +.|++.|.+...|.+|++.
T Consensus        83 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             HHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            666666666666666  5666666666666666543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=9.4e-22  Score=162.52  Aligned_cols=115  Identities=20%  Similarity=0.389  Sum_probs=88.7

Q ss_pred             CcceecC--cccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCcc--ccccCCCHHHHH
Q psy2838         262 GIKYKCE--ECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRLFAQEHTLR  337 (458)
Q Consensus       262 ~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~  337 (458)
                      .++|.|+  .|++.|.+...|..|++.| ...+|.|.+|++.|.+...|..|+++|+++++|.|..  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            3567887  7888888888888887544 6667888888888888888888888888888888875  888888888888


Q ss_pred             HHHhhccCCCccccC--cCcccCCCHHHHHHHHHHhCCCCCc
Q psy2838         338 THTLSVHSGVRLTCR--TCGLFCDSKRALTAHVREAHPGCEY  377 (458)
Q Consensus       338 ~H~~~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~  377 (458)
                      .|++.|+++.+|.|+  .|++.|.+...|..|++.|++++++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            888888888888885  4888888888888888888876543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=1.2e-21  Score=161.81  Aligned_cols=113  Identities=28%  Similarity=0.480  Sum_probs=67.9

Q ss_pred             ccccc--cCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhccCcceecCc--ccccccCHHHHHHH
Q psy2838         208 RIKCD--FCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEE--CTKTFAQKQNLLSH  283 (458)
Q Consensus       208 ~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~--C~~~f~~~~~L~~H  283 (458)
                      +|.|+  .|++.|.+...|..|+++| +.++|.|..|++.|.+...|..|++.|++.++|.|..  |++.|.+...|..|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H   83 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH   83 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHH
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHH
Confidence            45555  5666666666666666555 5556666666666666666666666666666666654  66666666666666


Q ss_pred             HHHhhcCceeecC--ccCcccCChhHHHHHHhhhccCccc
Q psy2838         284 VQAIHMGIKYTCE--VCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       284 ~~~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      ++.|++.++|.|+  .|++.|.+...|..|+++|++++++
T Consensus        84 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            6666666666664  3666666666666666666666554

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=2e-22  Score=168.14  Aligned_cols=84  Identities=24%  Similarity=0.449  Sum_probs=44.0

Q ss_pred             CCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhccCcceecCcccccccCHHHHHHHHH
Q psy2838         206 GVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQ  285 (458)
Q Consensus       206 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~  285 (458)
                      +++|.|.+|++.|.+...|..|+++|.++++|.|.+|++.|.+...|..|+++|.++++|.|.+|++.|.+...|..|++
T Consensus        20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   99 (133)
T 2lt7_A           20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK   99 (133)
T ss_dssp             EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHH
T ss_pred             CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhH
Confidence            34455555555555555555555555555555555555555555555555555445555555555555555555555554


Q ss_pred             Hhhc
Q psy2838         286 AIHM  289 (458)
Q Consensus       286 ~~h~  289 (458)
                      .+|+
T Consensus       100 ~hh~  103 (133)
T 2lt7_A          100 SVHS  103 (133)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            4444

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=7.8e-22  Score=169.73  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=16.9

Q ss_pred             CCcccccccccccCCHHHHHHHHHhhcC
Q psy2838         178 VKKFPCDQCGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       178 ~k~~~C~~C~~~f~~~~~L~~H~~~~h~  205 (458)
                      ...|.|..|++.|.+...|..|++.+|.
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   50 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHV   50 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTS
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcC
Confidence            3456666666666666666666665343

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=4.9e-19  Score=144.07  Aligned_cols=104  Identities=15%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             CchhhhhccchhccCcceecCcccccccCHHHHHHHHHH--hhcCce-eecCccCccc--CChhHHHHHHhhhccCcccc
Q psy2838         248 QKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQA--IHMGIK-YTCEVCSKSY--NQVTNLLSHMTTVHQAQKYK  322 (458)
Q Consensus       248 ~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~--~h~~~~-~~C~~C~~~f--~~~~~L~~H~~~h~~~~~~~  322 (458)
                      +...|..|+++|+++++|.|..|++.|.+...|..|++.  +....+ +.|.+|++.|  .....|..|+++|+++++|.
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            456789999999999999999999999999999999876  444444 4488888877  77778888888888888888


Q ss_pred             CccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         323 CADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       323 C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |..|++.|.+...|.+|++.+|......+
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCCCCccCCHHHHHHHHHHhCCcccCCC
Confidence            88888888888888888777776554433

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=5.8e-18  Score=135.48  Aligned_cols=88  Identities=23%  Similarity=0.463  Sum_probs=66.3

Q ss_pred             ceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHH
Q psy2838         291 IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       291 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      ++|.|.+|++.|.+...|..|+++|+++++|.|.+|++.|.+...|..|++.|++..+|.|.+|++.|.+...|..|++.
T Consensus        16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   95 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL   95 (106)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHHH
Confidence            34777777777777777777777777777777777777777777777777777777777777788888777778888777


Q ss_pred             hCCCCCcc
Q psy2838         371 AHPGCEYK  378 (458)
Q Consensus       371 ~h~~~~~~  378 (458)
                      |+++.+|.
T Consensus        96 H~~~~~~~  103 (106)
T 2ee8_A           96 HMQTSSPT  103 (106)
T ss_dssp             TTSCCCCC
T ss_pred             hCCCCCCc
Confidence            77766654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=7.7e-18  Score=132.13  Aligned_cols=85  Identities=25%  Similarity=0.457  Sum_probs=59.9

Q ss_pred             CceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHH
Q psy2838         290 GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVR  369 (458)
Q Consensus       290 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~  369 (458)
                      .++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.|++..+|.|.+|++.|.+...|..|++
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHHT
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777766666666777777777777777777777


Q ss_pred             HhCCC
Q psy2838         370 EAHPG  374 (458)
Q Consensus       370 ~~h~~  374 (458)
                      .|+++
T Consensus        86 ~h~~~   90 (96)
T 2dmd_A           86 SHTGD   90 (96)
T ss_dssp             TCCSC
T ss_pred             HhcCC
Confidence            77654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=7.4e-18  Score=128.00  Aligned_cols=80  Identities=25%  Similarity=0.619  Sum_probs=53.9

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      |.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.|+++.+|.|..|++.|.+...|..|++.|+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             ccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666665

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=1.7e-17  Score=132.71  Aligned_cols=92  Identities=26%  Similarity=0.527  Sum_probs=79.4

Q ss_pred             ccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHH
Q psy2838         260 HEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       260 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  339 (458)
                      ...++|.|..|++.|.+...|..|++.|+..++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H   92 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH   92 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH
Confidence            34578899999999999999999988887778899999999999999999999999998999999999999999999999


Q ss_pred             HhhccCCCcccc
Q psy2838         340 TLSVHSGVRLTC  351 (458)
Q Consensus       340 ~~~~h~~~~~~C  351 (458)
                      ++.|+++.+|.+
T Consensus        93 ~~~H~~~~~~~~  104 (106)
T 2ee8_A           93 KTLHMQTSSPTA  104 (106)
T ss_dssp             HHHTTSCCCCCC
T ss_pred             HHHhCCCCCCcC
Confidence            888887777653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.1e-17  Score=131.26  Aligned_cols=89  Identities=25%  Similarity=0.418  Sum_probs=75.7

Q ss_pred             CCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhc
Q psy2838         176 PPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISH  255 (458)
Q Consensus       176 ~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  255 (458)
                      .+.++|.|.+|++.|.+...|..|++.|+...+|.|.+|++.|.+...|..|+++|+++++|.|.+|++.|.+...|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            44678889999999999989999988777778888888888888888888888888888888888888888888888888


Q ss_pred             cchhccCcc
Q psy2838         256 IKSVHEGIK  264 (458)
Q Consensus       256 ~~~~~~~~~  264 (458)
                      +++|++++.
T Consensus        84 ~~~h~~~~~   92 (96)
T 2dmd_A           84 LRSHTGDSG   92 (96)
T ss_dssp             HTTCCSCCC
T ss_pred             HHHhcCCCC
Confidence            888877643

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=2.9e-18  Score=139.44  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             HHHHHHHhhcCCCccccccCccccCChHHHHHHHHH--hcCCcee-ecCcccccc--CCchhhhhccchhccCcceecCc
Q psy2838         195 NLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNS--AHNGVRF-KCDHCVKSF--NQKPNLISHIKSVHEGIKYKCEE  269 (458)
Q Consensus       195 ~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~--h~~~~~~-~C~~C~~~f--~~~~~L~~H~~~~~~~~~~~C~~  269 (458)
                      .|..|++.|+++++|.|.+|++.|.+...|..|++.  |.+.+++ .|.+|++.|  .....|..|+++|+++++|.|.+
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~   85 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY   85 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSS
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCC
Confidence            355566656666667777777777777777777776  5555554 488888888  88888999998888888899999


Q ss_pred             ccccccCHHHHHHHHHHhhcCceeec
Q psy2838         270 CTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       270 C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |++.|.+...|..|++.+|......+
T Consensus        86 C~k~f~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             SCCBCSSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCCccCCHHHHHHHHHHhCCcccCCC
Confidence            99999988889888887776655443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=3.1e-17  Score=128.36  Aligned_cols=85  Identities=25%  Similarity=0.543  Sum_probs=64.0

Q ss_pred             CceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCC--CccccCcCcccCCCHHHHHHH
Q psy2838         290 GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG--VRLTCRTCGLFCDSKRALTAH  367 (458)
Q Consensus       290 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~--~~~~C~~C~~~f~~~~~L~~H  367 (458)
                      .++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.|++.  .+|.|..|++.|.+...|..|
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H   84 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH   84 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHH
Confidence            445777777777777777777777777777777777877777777777777777665  667788888888888888888


Q ss_pred             HHHhCCC
Q psy2838         368 VREAHPG  374 (458)
Q Consensus       368 ~~~~h~~  374 (458)
                      ++..|.+
T Consensus        85 ~~~~H~~   91 (95)
T 2yt9_A           85 IKQVHSG   91 (95)
T ss_dssp             HHHTSCC
T ss_pred             HHHhcCC
Confidence            7765543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.70  E-value=2.4e-17  Score=125.11  Aligned_cols=81  Identities=26%  Similarity=0.550  Sum_probs=63.4

Q ss_pred             ceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhc
Q psy2838         264 KYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       264 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      +|.|..|++.|.+...|..|++.++..++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            46777788888777778888777777777888888888888888888888888778888888888888888888887766


Q ss_pred             c
Q psy2838         344 H  344 (458)
Q Consensus       344 h  344 (458)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.70  E-value=1.6e-17  Score=128.62  Aligned_cols=82  Identities=21%  Similarity=0.450  Sum_probs=41.8

Q ss_pred             eeecC--ccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHH
Q psy2838         292 KYTCE--VCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVR  369 (458)
Q Consensus       292 ~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~  369 (458)
                      +|.|.  .|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.|++..+|.|..|++.|.+...|..|++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHG
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHHH
Confidence            34454  2555555555555555555555555555555555555555555554444445555555555555555555555


Q ss_pred             HhCC
Q psy2838         370 EAHP  373 (458)
Q Consensus       370 ~~h~  373 (458)
                      .|++
T Consensus        84 ~H~~   87 (90)
T 1a1h_A           84 IHLR   87 (90)
T ss_dssp             GGGC
T ss_pred             Hhcc
Confidence            5543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=3.8e-17  Score=126.47  Aligned_cols=85  Identities=24%  Similarity=0.551  Sum_probs=57.7

Q ss_pred             CcceecC--cccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHH
Q psy2838         262 GIKYKCE--ECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       262 ~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  339 (458)
                      +++|.|.  .|++.|.+...|..|++.|+...+|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            3566676  47777777777777766666666677777777777777777777777777777777777777777777777


Q ss_pred             HhhccCC
Q psy2838         340 TLSVHSG  346 (458)
Q Consensus       340 ~~~~h~~  346 (458)
                      ++.|+++
T Consensus        82 ~~~H~~~   88 (90)
T 1a1h_A           82 TKIHLRQ   88 (90)
T ss_dssp             HGGGGC-
T ss_pred             HHHhccc
Confidence            6665543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=3.7e-17  Score=131.10  Aligned_cols=85  Identities=20%  Similarity=0.348  Sum_probs=53.2

Q ss_pred             hccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCH
Q psy2838         254 SHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQE  333 (458)
Q Consensus       254 ~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~  333 (458)
                      .+++.|.++++|.|.+|++.|.+...|..|++.|.  ++|.|.+|++.|.....|..|++ |+++++|.|..|++.|.+.
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCH
Confidence            34555566667777777777777777777765542  34666666666666666666663 6666666666666666666


Q ss_pred             HHHHHHHh
Q psy2838         334 HTLRTHTL  341 (458)
Q Consensus       334 ~~L~~H~~  341 (458)
                      ..|.+|++
T Consensus        83 ~~L~~H~~   90 (107)
T 1wjp_A           83 FSIWRHQV   90 (107)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.5e-17  Score=134.02  Aligned_cols=85  Identities=22%  Similarity=0.392  Sum_probs=62.6

Q ss_pred             cCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHH
Q psy2838         289 MGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHV  368 (458)
Q Consensus       289 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~  368 (458)
                      +.++|.| .|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.|++..+|.|.+|++.|.+...|.+|+
T Consensus         7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   85 (110)
T 2csh_A            7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV   85 (110)
T ss_dssp             CCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHHHH
Confidence            4455777 677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhCCC
Q psy2838         369 REAHPG  374 (458)
Q Consensus       369 ~~~h~~  374 (458)
                      +.||..
T Consensus        86 ~~~~~~   91 (110)
T 2csh_A           86 TSCTKS   91 (110)
T ss_dssp             HHHHHH
T ss_pred             HHcccc
Confidence            777753

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=5.9e-17  Score=126.78  Aligned_cols=86  Identities=27%  Similarity=0.525  Sum_probs=65.5

Q ss_pred             cCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccC--ccccCccccccCCCHHHHHH
Q psy2838         261 EGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQA--QKYKCADCGRLFAQEHTLRT  338 (458)
Q Consensus       261 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~  338 (458)
                      +.++|.|.+|++.|.+...|..|++.|+..++|.|.+|++.|.+...|..|+++|+++  ++|.|..|++.|.+...|..
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~   83 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG   83 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHH
Confidence            4567777777777777777777777666666777888888888777888888777776  77888888888888888888


Q ss_pred             HHhhccCC
Q psy2838         339 HTLSVHSG  346 (458)
Q Consensus       339 H~~~~h~~  346 (458)
                      |++..|.+
T Consensus        84 H~~~~H~~   91 (95)
T 2yt9_A           84 HIKQVHSG   91 (95)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhcCC
Confidence            87655554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=5.6e-17  Score=130.65  Aligned_cols=87  Identities=24%  Similarity=0.481  Sum_probs=76.9

Q ss_pred             hhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHH
Q psy2838         258 SVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLR  337 (458)
Q Consensus       258 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  337 (458)
                      .|.++++|.| .|++.|.+...|..|++.|+..++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            3567788999 899999999999999888877888999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccC
Q psy2838         338 THTLSVHS  345 (458)
Q Consensus       338 ~H~~~~h~  345 (458)
                      +|++.++.
T Consensus        83 ~H~~~~~~   90 (110)
T 2csh_A           83 RHVTSCTK   90 (110)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHccc
Confidence            99887764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=2.9e-17  Score=131.67  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=81.6

Q ss_pred             HHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHH
Q psy2838         285 QAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRAL  364 (458)
Q Consensus       285 ~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L  364 (458)
                      +.+...++|.|.+|++.|.....|..|+++|  .++|.|.+|++.|.+...|..|++ |+++.+|.|.+|++.|.+...|
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            3455667799999999999999999999998  478999999999999999999985 8888889999999999999999


Q ss_pred             HHHHH-HhCCCCCccc
Q psy2838         365 TAHVR-EAHPGCEYKK  379 (458)
Q Consensus       365 ~~H~~-~~h~~~~~~~  379 (458)
                      .+|++ .|.++.+|.+
T Consensus        86 ~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           86 WRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             HHHHHHTSCCCCCCCC
T ss_pred             HHHHHHHcCCCCCCCC
Confidence            99998 5656666665

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.62  E-value=5.5e-17  Score=125.16  Aligned_cols=82  Identities=18%  Similarity=0.406  Sum_probs=55.2

Q ss_pred             ceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHH
Q psy2838         291 IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       291 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      ++|.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|..|++.+|+ .+|.|..|++.|.+...|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            3466666666666666666666666666667777777777777777777666553 556677777777777777777766


Q ss_pred             hCC
Q psy2838         371 AHP  373 (458)
Q Consensus       371 ~h~  373 (458)
                      +|.
T Consensus        81 ~h~   83 (88)
T 1llm_C           81 LKK   83 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            663

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=120.63  Aligned_cols=80  Identities=24%  Similarity=0.517  Sum_probs=44.4

Q ss_pred             eecCc--cCcccCChhHHHHHHhhhccCccccCc--cccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHH
Q psy2838         293 YTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCA--DCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHV  368 (458)
Q Consensus       293 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~  368 (458)
                      |.|.+  |++.|.....|..|+++|+++++|.|.  .|++.|.+...|..|++.|++..+|.|..|++.|.+...|..|+
T Consensus        16 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   95 (100)
T 2ebt_A           16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM   95 (100)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHH
T ss_pred             eEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHH
Confidence            55554  555555555555555555555555553  35555555555555555555555555555555555555555555


Q ss_pred             HHhC
Q psy2838         369 REAH  372 (458)
Q Consensus       369 ~~~h  372 (458)
                      +.|+
T Consensus        96 ~~H~   99 (100)
T 2ebt_A           96 KRHQ   99 (100)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            5553

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.60  E-value=2.4e-15  Score=118.62  Aligned_cols=83  Identities=22%  Similarity=0.460  Sum_probs=71.2

Q ss_pred             CcceecCc--ccccccCHHHHHHHHHHhhcCceeecC--ccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHH
Q psy2838         262 GIKYKCEE--CTKTFAQKQNLLSHVQAIHMGIKYTCE--VCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLR  337 (458)
Q Consensus       262 ~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  337 (458)
                      .++|.|..  |++.|.+...|..|++.|+..++|.|.  .|++.|.....|..|+++|+++++|.|..|++.|.+...|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            46788886  999998888899998877777888996  59999999999999999999889999999999999999999


Q ss_pred             HHHhhcc
Q psy2838         338 THTLSVH  344 (458)
Q Consensus       338 ~H~~~~h  344 (458)
                      .|++.|+
T Consensus        93 ~H~~~H~   99 (100)
T 2ebt_A           93 LHMKRHQ   99 (100)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9987764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.59  E-value=2.9e-16  Score=121.07  Aligned_cols=82  Identities=13%  Similarity=0.391  Sum_probs=68.9

Q ss_pred             cceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhh
Q psy2838         263 IKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       263 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      ++|.|..|++.|.+...|..|++.|++.++|.|.+|++.|.....|..|+++|++ .+|.|..|++.|.+...|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            5788888888888888888888877777788888888888888888888888885 778888888888888888888887


Q ss_pred             ccC
Q psy2838         343 VHS  345 (458)
Q Consensus       343 ~h~  345 (458)
                      +|.
T Consensus        81 ~h~   83 (88)
T 1llm_C           81 LKK   83 (88)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.59  E-value=1.1e-15  Score=117.92  Aligned_cols=80  Identities=25%  Similarity=0.551  Sum_probs=47.7

Q ss_pred             eeecCc--cCcccCChhHHHHHHhhhccCccccCc--cccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHH
Q psy2838         292 KYTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCA--DCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAH  367 (458)
Q Consensus       292 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H  367 (458)
                      .|.|.+  |++.|.+...|..|+++|+++++|.|+  .|++.|.+...|..|++.|++..+|.|..|++.|.+...|..|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   84 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH   84 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH
Confidence            355655  666666666666666666655666664  3666666666666665555555556666666666666666666


Q ss_pred             HHHh
Q psy2838         368 VREA  371 (458)
Q Consensus       368 ~~~~  371 (458)
                      ++.|
T Consensus        85 ~~~H   88 (89)
T 2wbs_A           85 MKRH   88 (89)
T ss_dssp             GGGG
T ss_pred             HHhh
Confidence            5554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.58  E-value=1.6e-15  Score=115.68  Aligned_cols=77  Identities=26%  Similarity=0.577  Sum_probs=57.7

Q ss_pred             eec--CccCcccCChhHHHHHHhhhccCccccCcc--ccccCCCHHHHHHHHhhccCCCccccCc---CcccCCCHHHHH
Q psy2838         293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRLFAQEHTLRTHTLSVHSGVRLTCRT---CGLFCDSKRALT  365 (458)
Q Consensus       293 ~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~~---C~~~f~~~~~L~  365 (458)
                      |.|  ..|++.|.+...|..|+++|+++++|.|+.  |++.|.+...|.+|++.|++   |.|..   |++.|.+...|.
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHH
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHH
Confidence            667  667777777777777777777777777766  77777777777777766665   77777   777777777777


Q ss_pred             HHHHHhC
Q psy2838         366 AHVREAH  372 (458)
Q Consensus       366 ~H~~~~h  372 (458)
                      .|++.||
T Consensus        79 ~H~~~hh   85 (85)
T 2j7j_A           79 KHVAECH   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            7777765

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.58  E-value=2.6e-15  Score=115.75  Aligned_cols=81  Identities=21%  Similarity=0.501  Sum_probs=52.3

Q ss_pred             cceecCc--ccccccCHHHHHHHHHHhhcCceeecC--ccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHH
Q psy2838         263 IKYKCEE--CTKTFAQKQNLLSHVQAIHMGIKYTCE--VCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRT  338 (458)
Q Consensus       263 ~~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~  338 (458)
                      .+|.|..  |++.|.+...|..|++.|+...+|.|.  .|++.|.+...|..|+++|+++++|.|..|++.|.+...|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            3566666  666666666666666555555566665  366666666666666666666666666666666666666666


Q ss_pred             HHhhc
Q psy2838         339 HTLSV  343 (458)
Q Consensus       339 H~~~~  343 (458)
                      |++.|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            65543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=3.8e-15  Score=113.97  Aligned_cols=80  Identities=23%  Similarity=0.367  Sum_probs=68.3

Q ss_pred             hhhhccchhccCcceecCcccccccCHHHHHHHHHHhhcC----ceeecCccCcccCChhHHHHHHhhhccCccccCccc
Q psy2838         251 NLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG----IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADC  326 (458)
Q Consensus       251 ~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~----~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  326 (458)
                      +|.+|+++|.++++|.|.+|++.|.+...|..|++.++..    ++|.|.+|++.|.....|..|+++|++++++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            5778899888889999999999999999999998777765    568888888888888888888888888888888888


Q ss_pred             cccC
Q psy2838         327 GRLF  330 (458)
Q Consensus       327 ~~~f  330 (458)
                      +..|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.56  E-value=3e-15  Score=105.63  Aligned_cols=55  Identities=20%  Similarity=0.503  Sum_probs=32.6

Q ss_pred             CceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         290 GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       290 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      +++|.|.+|++.|.....|..|+++|++++||.|..|++.|.+.+.|.+|+++|.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccC
Confidence            3456666666666666666666666666666666666666666666666654433

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=1.1e-14  Score=111.07  Aligned_cols=78  Identities=24%  Similarity=0.477  Sum_probs=55.8

Q ss_pred             ceec--CcccccccCHHHHHHHHHHhhcCceeecCc--cCcccCChhHHHHHHhhhccCccccCcc---ccccCCCHHHH
Q psy2838         264 KYKC--EECTKTFAQKQNLLSHVQAIHMGIKYTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCAD---CGRLFAQEHTL  336 (458)
Q Consensus       264 ~~~C--~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~---C~~~f~~~~~L  336 (458)
                      ||.|  ..|++.|.+...|..|++.+++.++|.|++  |++.|.+...|..|+++|++   |.|..   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4667  667777777777777776666666677766  77777777777777777766   77777   77777777777


Q ss_pred             HHHHhhcc
Q psy2838         337 RTHTLSVH  344 (458)
Q Consensus       337 ~~H~~~~h  344 (458)
                      .+|++.+|
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            77766654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.3e-15  Score=113.69  Aligned_cols=78  Identities=19%  Similarity=0.349  Sum_probs=66.8

Q ss_pred             HHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCC----CccccCcCcccCCCHHHHHHHHHHhCCCCCcccCCC
Q psy2838         307 NLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG----VRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRGR  382 (458)
Q Consensus       307 ~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~----~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~~  382 (458)
                      +|.+|+++|+++++|.|..|++.|.+...|..|++.+|..    .+|.|..|++.|.....|..|++.|+++.++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            3567888898899999999999999999999998877776    568899999999999999999999998888888877


Q ss_pred             CC
Q psy2838         383 GR  384 (458)
Q Consensus       383 ~~  384 (458)
                      +.
T Consensus        82 ~~   83 (86)
T 1x6h_A           82 GP   83 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=4.9e-15  Score=116.58  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=70.8

Q ss_pred             cccCChhHHHHHHhhhccCccccCccccccCC-CHHHHHHHHhhccC-CCccccCcCcccCCCHHHHHHHHHHhCCCCCc
Q psy2838         300 KSYNQVTNLLSHMTTVHQAQKYKCADCGRLFA-QEHTLRTHTLSVHS-GVRLTCRTCGLFCDSKRALTAHVREAHPGCEY  377 (458)
Q Consensus       300 ~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~-~~~~L~~H~~~~h~-~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~  377 (458)
                      ..+.....+..|+++|.++++|.|.+|++.|. +...|.+|++.|++ .++|.|.+|++.|.++..|.+|++.||+++++
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            34566677889999999999999999999999 99999999999888 78899999999999999999999999988664


Q ss_pred             c
Q psy2838         378 K  378 (458)
Q Consensus       378 ~  378 (458)
                      .
T Consensus        84 ~   84 (98)
T 2gqj_A           84 D   84 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.52  E-value=1.4e-14  Score=102.20  Aligned_cols=58  Identities=19%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             CcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCc
Q psy2838         262 GIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ  319 (458)
Q Consensus       262 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  319 (458)
                      ++||.|.+|++.|.....|..|++.|.++++|.|.+|++.|...+.|..|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4677777777777777777777766666677777777777777777777777777653

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.50  E-value=2.9e-15  Score=124.22  Aligned_cols=79  Identities=15%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             eecCccCcccC------ChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHH
Q psy2838         293 YTCEVCSKSYN------QVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTA  366 (458)
Q Consensus       293 ~~C~~C~~~f~------~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~  366 (458)
                      +.|.+|.+.|.      ....|..|+ .|+++++|.|..|++.|.+...|..|++.|  ..+|.|..|++.|..+..|.+
T Consensus        42 ~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~  118 (129)
T 2wbt_A           42 LIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALD  118 (129)
T ss_dssp             HHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHH
T ss_pred             ccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHH
Confidence            45555544443      455566665 577788888888888888888888887665  667888888888888888888


Q ss_pred             HHHHhCCC
Q psy2838         367 HVREAHPG  374 (458)
Q Consensus       367 H~~~~h~~  374 (458)
                      |++.||+.
T Consensus       119 H~~~h~~~  126 (129)
T 2wbt_A          119 HVCKKHNI  126 (129)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHCCc
Confidence            88888764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4e-14  Score=106.38  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             CcceecCc--ccccccCHHHHHHHHH-HhhcCceeecCc--cCcccCChhHHHHHHhhhccCccccCccccccC
Q psy2838         262 GIKYKCEE--CTKTFAQKQNLLSHVQ-AIHMGIKYTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLF  330 (458)
Q Consensus       262 ~~~~~C~~--C~~~f~~~~~L~~H~~-~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f  330 (458)
                      .++|.|..  |++.|.+...|..|++ .|...++|.|.+  |++.|.+...|..|+++|+++++|.|..|++.|
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            34555554  5555555555555554 233444455555  555555555555555555555555555555555

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.49  E-value=6.3e-15  Score=122.20  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             hcCCceeecCccccc--cCCchhhhhccchhccCcceecCccccccc------CHHHHHHHHHHhhcCceeecCccCccc
Q psy2838         231 AHNGVRFKCDHCVKS--FNQKPNLISHIKSVHEGIKYKCEECTKTFA------QKQNLLSHVQAIHMGIKYTCEVCSKSY  302 (458)
Q Consensus       231 h~~~~~~~C~~C~~~--f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~------~~~~L~~H~~~~h~~~~~~C~~C~~~f  302 (458)
                      +.+.++|.|..++..  |.....+..|.. ....+.+.|.+|.+.|.      ....|..|+ .+++.++|.|.+|++.|
T Consensus         7 ~~~~k~~~~~~k~~~~~~s~ee~~~~~~l-~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f   84 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFIHVTLEELKRYHQL-TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPF   84 (129)
T ss_dssp             CTTCCGGGGCSSCEEEECCHHHHHHHTTS-CHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEE
T ss_pred             cccccccccccCCeeeeecHHhhhccccC-ChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCccc
Confidence            445566666553322  222222222222 22335566666665554      667777776 68888889999999999


Q ss_pred             CChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCC
Q psy2838         303 NQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG  346 (458)
Q Consensus       303 ~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  346 (458)
                      .....|..|+++|  +++|.|..|++.|.+...|.+|++.||+.
T Consensus        85 ~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           85 SSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9999999999998  88999999999999999999999888864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=4.2e-14  Score=106.30  Aligned_cols=71  Identities=27%  Similarity=0.483  Sum_probs=56.8

Q ss_pred             CCCcccccc--cccccCCHHHHHHHHH-hhcCCCcccccc--CccccCChHHHHHHHHHhcCCceeecCccccccC
Q psy2838         177 PVKKFPCDQ--CGKSFTLKQNLTYHVN-SIHLGVRIKCDF--CDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFN  247 (458)
Q Consensus       177 ~~k~~~C~~--C~~~f~~~~~L~~H~~-~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~  247 (458)
                      +.++|.|..  |++.|.+...|..|++ .|...++|.|.+  |++.|.+...|..|+++|+++++|.|.+|++.|.
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            456788876  8888888888888887 466677788887  8888888888888888888888888888888773

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.4e-13  Score=107.64  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=47.2

Q ss_pred             cccCChhHHHHHHhhhccCccccCccccccC-CCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHH-HHHhC
Q psy2838         300 KSYNQVTNLLSHMTTVHQAQKYKCADCGRLF-AQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAH-VREAH  372 (458)
Q Consensus       300 ~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f-~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H-~~~~h  372 (458)
                      ..|.....|..|+++|+++++|.|+.|++.| .+...|..|++.| ++++|.|.+|++.|..+..|..| ++.|.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            3455556666666666666667777777777 6677777776666 66666677777777777777777 44443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=5.2e-14  Score=110.64  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             cCCchhhhhccchhccCcceecCccccccc-CHHHHHHHHHHhhc-CceeecCccCcccCChhHHHHHHhhhccCccc
Q psy2838         246 FNQKPNLISHIKSVHEGIKYKCEECTKTFA-QKQNLLSHVQAIHM-GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       246 f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~-~~~~L~~H~~~~h~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      +.....+..|++.|.+.++|.|.+|++.|. ....|..|++.|+. .++|.|.+|++.|.+...|..|+++|++++++
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            334444555555555555555555555555 55555555544444 44455555555555555555555555555443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.9e-13  Score=106.79  Aligned_cols=78  Identities=15%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             ccccCHHHHHHHHHHhhcCceeecCccCccc-CChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccc
Q psy2838         272 KTFAQKQNLLSHVQAIHMGIKYTCEVCSKSY-NQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT  350 (458)
Q Consensus       272 ~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f-~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~  350 (458)
                      ..|.....|..|++.++..++|.|.+|++.| .+...|..|+++| ++++|.|.+|++.|.+...|..|++..|.+++|.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            4566777788887777777888888888888 8888888888888 8888888888888888888888833445555543

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.1e-14  Score=106.52  Aligned_cols=67  Identities=27%  Similarity=0.449  Sum_probs=60.4

Q ss_pred             HHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCC--CccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         308 LLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG--VRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       308 L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~--~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      |.+|+++|+++++|.|.+|++.|.+...|..|++.+|.+  .+|.|..|++.|.++..|..|++.+|+.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            457899999999999999999999999999998755654  6899999999999999999999999975

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.1e-13  Score=103.53  Aligned_cols=66  Identities=26%  Similarity=0.519  Sum_probs=45.4

Q ss_pred             hhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccC
Q psy2838         258 SVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC  323 (458)
Q Consensus       258 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  323 (458)
                      .+.++++|.|.+|++.|.+...|..|++.|+..++|.|.+|++.|.....|..|+++|++++||+|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            345556777777777777777777777666666667777777777777777777777777777666

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=2.1e-13  Score=101.97  Aligned_cols=65  Identities=28%  Similarity=0.514  Sum_probs=55.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeec
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC  239 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  239 (458)
                      +.+.++|.|.+|++.|.....|..|++.|+..++|.|.+|++.|.....|..|+++|++++||+|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44567889999999998888898998877777788888888888888888888888888888877

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=2.9e-13  Score=99.13  Aligned_cols=63  Identities=17%  Similarity=0.364  Sum_probs=51.8

Q ss_pred             hhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCC
Q psy2838         314 TVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCE  376 (458)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~  376 (458)
                      .|.++++|.|..|++.|.+...|.+|++.|++..+|.|.+|++.|.....|.+|++.||++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            356778888888888888888888888887777788888888888888888888888887654

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.39  E-value=4.4e-13  Score=99.34  Aligned_cols=63  Identities=24%  Similarity=0.444  Sum_probs=45.5

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEY  377 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~  377 (458)
                      +.++++|+|..|++.|.+...|..|++.|++.++|.|..|++.|..+..|.+|++.|+++++|
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            445667777777777777777777777776666777777777777777777777777766554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.8e-13  Score=100.93  Aligned_cols=63  Identities=22%  Similarity=0.441  Sum_probs=52.7

Q ss_pred             HhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         312 MTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       312 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      .++|.++++|.|..|++.|.+...|..|++.|++..+|.|.+|++.|..+..|.+|++.|+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            456778888888888888888888888888888788888888888888888888888888764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.7e-13  Score=105.89  Aligned_cols=71  Identities=20%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHHhhc----CCCccccccCccccCChHHHHHH-HHHhcCCceeecCcccc
Q psy2838         174 KGPPVKKFPCDQCGKSFTLKQNLTYHVNSIH----LGVRIKCDFCDKTFAHKPNLIAH-MNSAHNGVRFKCDHCVK  244 (458)
Q Consensus       174 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h----~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~C~~  244 (458)
                      ...++++|.|..|++.|.....|..|++..|    ++++|.|.+|++.|.....|..| +++|.+++||.|.++..
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            3467889999999999999999999997534    45679999999999999999999 78999999999987543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.37  E-value=7.2e-13  Score=98.17  Aligned_cols=63  Identities=25%  Similarity=0.464  Sum_probs=54.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCcee
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRF  237 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  237 (458)
                      +.+.++|+|..|++.|.....|..|++.|+.+++|.|.+|++.|.....|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            455688999999999999999999998888888899999999999999999999999888775

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=6.4e-13  Score=99.27  Aligned_cols=67  Identities=21%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             hhhhccchhccCcceecCcccccccCHHHHHHHHHHhhcC--ceeecCccCcccCChhHHHHHHhhhcc
Q psy2838         251 NLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG--IKYTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       251 ~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~--~~~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      +|.+|+++|.++++|.|.+|++.|.+...|..|++.+|..  ++|.|.+|++.|.+...|..|++++|+
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            4667888888888888888888888888888887655543  467777777777777777777777664

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=5.2e-13  Score=96.51  Aligned_cols=61  Identities=25%  Similarity=0.432  Sum_probs=48.6

Q ss_pred             hhhccCccccCccccccCCCHHHHHHHHhhcc--CCCccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH--SGVRLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h--~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      ++|.++++|.|..|++.|.+...|..|++.+|  +..+|.|+.|++.|.+...|..|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            46777888888888888888888888877744  55678888888888888888888888875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=6.4e-13  Score=104.53  Aligned_cols=68  Identities=19%  Similarity=0.314  Sum_probs=54.3

Q ss_pred             ccCcceecCcccccccCHHHHHHHHHHhh----cCceeecCccCcccCChhHHHHH-HhhhccCccccCcccc
Q psy2838         260 HEGIKYKCEECTKTFAQKQNLLSHVQAIH----MGIKYTCEVCSKSYNQVTNLLSH-MTTVHQAQKYKCADCG  327 (458)
Q Consensus       260 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~h----~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~C~  327 (458)
                      .++++|.|..|++.|.....|..|++..|    ..++|.|.+|++.|.....|..| +++|++++||.|.++.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            35678888888888888888888886534    35568888888888888888888 7888888888888754

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=1.1e-12  Score=96.01  Aligned_cols=64  Identities=23%  Similarity=0.377  Sum_probs=52.4

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCcee
Q psy2838         174 KGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRF  237 (458)
Q Consensus       174 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  237 (458)
                      .+.+.++|.|.+|++.|.....|..|++.|+..++|.|.+|++.|.....|..|+++|+++++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            3556788888888888888888888888777777888888888888888888888888877653

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.34  E-value=8.4e-13  Score=92.31  Aligned_cols=55  Identities=22%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             CccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         318 AQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       318 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      +++|.|..|++.|.+...|..|++.|+++.+|.|..|++.|.....|..|++.||
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3455555555555555555555555555555556666666665556666655555

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.34  E-value=7.3e-13  Score=100.46  Aligned_cols=52  Identities=27%  Similarity=0.499  Sum_probs=24.7

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |.|++|++.|.+...|..|+++|++++||.|..|++.|.+...|.+|+++.|
T Consensus        29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            4444444444444444444444444444444444444444444444443333

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.32  E-value=8e-13  Score=100.26  Aligned_cols=62  Identities=26%  Similarity=0.449  Sum_probs=56.9

Q ss_pred             hhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      .++...++|.|++|++.|.+...|.+|++.|+++++|.|.+|++.|..+..|.+|++..|.+
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            34567788999999999999999999999999999999999999999999999999887754

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=2.2e-12  Score=94.95  Aligned_cols=61  Identities=25%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             chhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhcc
Q psy2838         257 KSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       257 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      ++|.++++|.|.+|++.|.....|..|++.|+..++|.|.+|++.|.....|..|+++|++
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            3344455555555555555555555555444444445555555555555555555555544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.32  E-value=1.1e-12  Score=91.63  Aligned_cols=54  Identities=30%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             ceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         291 IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       291 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      ++|.|.+|++.|.+...|..|+++|+++++|.|+.|++.|.+...|..|++.+|
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            457777777777777777777777777777777777777777777777777665

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.5e-14  Score=105.69  Aligned_cols=72  Identities=17%  Similarity=0.145  Sum_probs=56.2

Q ss_pred             CchhhhhccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCccccCccc
Q psy2838         248 QKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADC  326 (458)
Q Consensus       248 ~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  326 (458)
                      +...|..|+++|+++++|.|..|++.|.+...|..       .++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         2 ~~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             cchhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            35667888888888888888888888887777655       5567888888888888888888888888888888776

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.29  E-value=2.6e-12  Score=89.73  Aligned_cols=53  Identities=26%  Similarity=0.505  Sum_probs=26.7

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccC
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      |.|.+|++.|.+...|..|+++|+++++|.|..|++.|.+...|.+|++.|++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            44555555555555555555555555555555555555555555555444443

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3e-12  Score=95.77  Aligned_cols=60  Identities=23%  Similarity=0.473  Sum_probs=52.6

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccC---CCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHS---GVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~---~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      |+++++|+|.+|++.|.+...|..|++.|++   ..+|.|.+|++.|..+..|.+|++.+|.+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            6788899999999999999999999888875   67889999999999999999999888865

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.27  E-value=4.4e-12  Score=88.58  Aligned_cols=56  Identities=23%  Similarity=0.450  Sum_probs=53.0

Q ss_pred             cccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCC
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC  375 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~  375 (458)
                      ||.|..|++.|.+...|..|++.|++..+|.|..|++.|.+...|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999999999899999999999999999999999998763

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=7.2e-12  Score=88.49  Aligned_cols=52  Identities=27%  Similarity=0.700  Sum_probs=28.4

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |.|.+|++.|.+...|..|+++|+++++|.|+.|++.|.+...|..|++..|
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            5555555555555555555555555555555555555555555555543333

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=4.4e-12  Score=91.49  Aligned_cols=55  Identities=27%  Similarity=0.656  Sum_probs=28.8

Q ss_pred             CceeecCccCcccCChhHHHHHHhh-h-ccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         290 GIKYTCEVCSKSYNQVTNLLSHMTT-V-HQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       290 ~~~~~C~~C~~~f~~~~~L~~H~~~-h-~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      .++|.|..|++.|.+...|..|+++ | .++++|.|+.|++.|.+...|..|++.+|
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            3445555555555555555555554 3 24455555555555555555555555544

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=6.8e-12  Score=93.83  Aligned_cols=59  Identities=22%  Similarity=0.469  Sum_probs=38.1

Q ss_pred             cCceeecCccCcccCChhHHHHHHhhhcc---CccccCccccccCCCHHHHHHHHhhccCCC
Q psy2838         289 MGIKYTCEVCSKSYNQVTNLLSHMTTVHQ---AQKYKCADCGRLFAQEHTLRTHTLSVHSGV  347 (458)
Q Consensus       289 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~  347 (458)
                      +.++|.|.+|++.|.....|..|+++|++   +++|.|..|++.|.+...|.+|++.+|.+.
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            34556666666666666666666666664   566777777777777777777765555543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-13  Score=102.21  Aligned_cols=68  Identities=15%  Similarity=0.088  Sum_probs=43.1

Q ss_pred             HHHHHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhccCcceecCcc
Q psy2838         196 LTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEEC  270 (458)
Q Consensus       196 L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C  270 (458)
                      |..|++.|.++++|.|.+|++.|.....|..       +++|.|..|++.|.....|..|+++|+++++|.|.+|
T Consensus         6 l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4445554444555555555555555555443       5667777777777777777777777777777777766

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=1.4e-11  Score=86.99  Aligned_cols=56  Identities=25%  Similarity=0.517  Sum_probs=51.4

Q ss_pred             ccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      ++|.|..|++.|.+...|..|++.|++..+|.|..|++.|.+...|..|++..|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            57999999999999999999999988888999999999999999999998665543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=8.5e-11  Score=91.33  Aligned_cols=62  Identities=21%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             CcccccccccccCCHHHHHHHHHh-hcCCCc--------cccccCccccCChHHHHHHHHHhcCCceeecC
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVNS-IHLGVR--------IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD  240 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~~-~h~~~~--------~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  240 (458)
                      ..|.|..|++.|.....|..|++. |.+..+        |.|.+|++.|.....|..|+++|+++++|.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            457899999999999999999987 444444        78888888888888888888888888888885

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=8.1e-11  Score=91.43  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=10.3

Q ss_pred             eecCcccccccCHHHHHHHHHH
Q psy2838         265 YKCEECTKTFAQKQNLLSHVQA  286 (458)
Q Consensus       265 ~~C~~C~~~f~~~~~L~~H~~~  286 (458)
                      |.|..|++.|.+...|..|++.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~   47 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTM   47 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHH
T ss_pred             CcccccccccCCHHHHHHHHHH
Confidence            3444444444444444444443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.08  E-value=1.3e-10  Score=85.41  Aligned_cols=53  Identities=21%  Similarity=0.618  Sum_probs=25.3

Q ss_pred             cceecC--cccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhh
Q psy2838         263 IKYKCE--ECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       263 ~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h  315 (458)
                      ++|.|+  .|++.|.....|..|++.|++.++|.|.+|++.|.....|..|+++|
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            445554  25555555555555544444444444444444444444444444443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=1.4e-10  Score=85.35  Aligned_cols=60  Identities=20%  Similarity=0.507  Sum_probs=46.8

Q ss_pred             CCCCCCCccccc--ccccccCCHHHHHHHHHhhcCCCccccccCccccCChHHHHHHHHHhc
Q psy2838         173 GKGPPVKKFPCD--QCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAH  232 (458)
Q Consensus       173 ~~~~~~k~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~  232 (458)
                      ..+.+.++|.|.  .|++.|.....|..|++.|++.++|.|.+|++.|.....|..|+++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            445667788886  488888888888888887777777888888888888888888877663

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=83.45  Aligned_cols=58  Identities=19%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             CCCCcccccccccccCCHHHHHHHHHhhcCCCccccc-cCccccCChHHHHHHHHHhcCCc
Q psy2838         176 PPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCD-FCDKTFAHKPNLIAHMNSAHNGV  235 (458)
Q Consensus       176 ~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~-~C~~~f~~~~~L~~H~~~h~~~~  235 (458)
                      -+.++|.|..|++.|. ...|..|++. .++++|.|. .|++.|.....|..|+++|...+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            3456677777777777 7777777765 666667777 67777776677777776665443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.2e-10  Score=81.01  Aligned_cols=54  Identities=20%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             CcceecCcccccccCHHHHHHHHHHhhcCceeecC-ccCcccCChhHHHHHHhhhcc
Q psy2838         262 GIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE-VCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       262 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~-~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      .++|.|..|++.|. ...|..|++. .+.++|.|. .|++.|.....|..|+++|..
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            34555555555555 5555555544 444445555 555555555555555555443

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.96  E-value=2e-10  Score=76.20  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      +|+++|+++++|+|..|++.|.+...|.+|++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            366677777777777777777777777777777666667777766

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.9e-10  Score=76.21  Aligned_cols=44  Identities=16%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            56666667777777777777777777777666666666666665

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=76.07  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      .|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            356667777777777777777777777777766666667777766

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.95  E-value=2.1e-10  Score=76.11  Aligned_cols=44  Identities=18%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666656666666655

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.9e-10  Score=76.26  Aligned_cols=45  Identities=18%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      +|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            356666666667777777777777777777666666666666665

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=75.88  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=27.4

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55566666666666666666666666666665555556666655

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.3e-10  Score=75.79  Aligned_cols=45  Identities=22%  Similarity=0.341  Sum_probs=33.1

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      .|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            366677777777777777777777777777777766777777766

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.3e-10  Score=75.82  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      +|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            356667777777777777777777777777766666666777665

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.4e-10  Score=75.73  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|+|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666666666666655

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.2e-10  Score=75.95  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56666666777777777777777777777666666666666665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.94  E-value=2.1e-10  Score=76.06  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      +|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            356666667777777777777777777777666666666667665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.8e-10  Score=75.41  Aligned_cols=44  Identities=16%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56667777777777777777777777777766666666777665

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.94  E-value=2.2e-10  Score=75.91  Aligned_cols=44  Identities=18%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            55666666666666666666666666666666666666666655

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.9e-10  Score=76.19  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=26.2

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555566666666666666666666666555555555556555

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.5e-10  Score=75.67  Aligned_cols=44  Identities=16%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56666666777777777777777777777666666666666665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.3e-10  Score=75.06  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56667777777777777777777777777776666667777666

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.6e-10  Score=75.53  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      .|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            356666666667777777777777777777666666666666665

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.3e-10  Score=75.10  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            55666677777777777777777777777666666666777665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.6e-10  Score=75.55  Aligned_cols=44  Identities=18%  Similarity=0.266  Sum_probs=27.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666665555556666554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.6e-10  Score=75.61  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            56666667777777777777777777777666666666666665

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.2e-10  Score=76.00  Aligned_cols=45  Identities=18%  Similarity=0.240  Sum_probs=30.0

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      +|+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            356666666667777777777777777777666666666666665

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.1e-10  Score=76.01  Aligned_cols=44  Identities=16%  Similarity=0.312  Sum_probs=25.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555566666666666666666666555555555555554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.4e-10  Score=74.92  Aligned_cols=44  Identities=11%  Similarity=0.184  Sum_probs=23.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34455555555555555555555555555555555555555554

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2e-10  Score=76.11  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=26.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55555566666666666666666666666555555555666555

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.4e-10  Score=75.76  Aligned_cols=44  Identities=20%  Similarity=0.380  Sum_probs=28.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666656666666655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.92  E-value=8.2e-10  Score=80.89  Aligned_cols=49  Identities=29%  Similarity=0.573  Sum_probs=26.1

Q ss_pred             eecCc--cCcccCChhHHHHHHhhhccCccccCcc--ccccCCCHHHHHHHHh
Q psy2838         293 YTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCAD--CGRLFAQEHTLRTHTL  341 (458)
Q Consensus       293 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~~~~~L~~H~~  341 (458)
                      |.|.+  |++.|.....|..|+++|+++++|+|.+  |++.|.+...|.+|++
T Consensus        18 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             EECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             eeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            55544  5555555555555555555555555533  5555555555555543

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.92  E-value=2.8e-10  Score=75.42  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56667777777777777777777777777666666666777666

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=3.2e-10  Score=75.11  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=29.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55666666666676676666666666666666666666666665

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.92  E-value=2.6e-10  Score=75.57  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666666666666666665555556666555

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.1e-10  Score=76.03  Aligned_cols=44  Identities=16%  Similarity=0.266  Sum_probs=27.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            55556666666666666666666666666666555556666555

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.9e-10  Score=75.38  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55566666666666666666666666666666555666666655

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.6e-10  Score=75.62  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=25.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45555555566666666666666666666555555555555554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.9e-10  Score=75.34  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      .|+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            366667777777777777777777777777666666666777665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.2e-10  Score=75.96  Aligned_cols=44  Identities=16%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555556666666666666666666666555555555556554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.7e-10  Score=75.51  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555556666666666666666666555555555555554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.8e-10  Score=75.39  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55666666666666666666666666666666666666666665

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.7e-10  Score=74.88  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=27.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666666655

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.6e-10  Score=75.54  Aligned_cols=44  Identities=16%  Similarity=0.254  Sum_probs=27.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55556666666666666666666666666666555556666655

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.1e-10  Score=76.03  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      .|+++|+++++|.|..|++.|.+...|..|++.|+++++|.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            355666666667777777777777777777666666666666665

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.1e-10  Score=76.05  Aligned_cols=44  Identities=23%  Similarity=0.415  Sum_probs=26.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666666666666666655555555666555

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.3e-10  Score=75.06  Aligned_cols=44  Identities=16%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.+|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            55666667777777777777777777777666666666667665

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.9e-10  Score=74.72  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=27.8

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666655566666554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.2e-10  Score=75.12  Aligned_cols=44  Identities=18%  Similarity=0.338  Sum_probs=26.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|.+|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45555666666666666666666666666555555555656555

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=4.6e-10  Score=74.33  Aligned_cols=44  Identities=16%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|.+|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666666666666666666666666655555555666555

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.88  E-value=4.7e-10  Score=74.31  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666666666666666666655566666655

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.9e-10  Score=75.35  Aligned_cols=39  Identities=28%  Similarity=0.410  Sum_probs=15.4

Q ss_pred             HhcCCceeecCccccccCCchhhhhccchhccCcceecC
Q psy2838         230 SAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCE  268 (458)
Q Consensus       230 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~  268 (458)
                      +|.++++|.|.+|++.|.+...|..|+++|+++++|.|.
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            333333344444444444434444443333333333333

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.7e-10  Score=74.82  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             HHHHhcCCceeecCccccccCCchhhhhccchhccCcceecCcc
Q psy2838         227 HMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEEC  270 (458)
Q Consensus       227 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~C  270 (458)
                      |+++|.++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666676677666666666666666666666666665

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=5e-10  Score=74.17  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=25.5

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555566666666666666666666555555555555554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.3e-10  Score=75.07  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=12.8

Q ss_pred             CCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         233 NGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       233 ~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSC
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCC
Confidence            33333333333333333333333333333333333

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.87  E-value=1.9e-09  Score=78.92  Aligned_cols=56  Identities=21%  Similarity=0.542  Sum_probs=42.9

Q ss_pred             CCCCcccccc--cccccCCHHHHHHHHHhhcCCCcccccc--CccccCChHHHHHHHHHh
Q psy2838         176 PPVKKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVRIKCDF--CDKTFAHKPNLIAHMNSA  231 (458)
Q Consensus       176 ~~~k~~~C~~--C~~~f~~~~~L~~H~~~~h~~~~~~C~~--C~~~f~~~~~L~~H~~~h  231 (458)
                      ...++|.|..  |++.|.....|..|++.|+++++|.|.+  |++.|.....|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            4457788877  8888888888888888777777788854  888888888888887654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=3.6e-10  Score=74.90  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=12.8

Q ss_pred             CCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         233 NGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       233 ~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++++|.|..|++.|.....|..|+++|+++++|.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCS
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCC
Confidence            33333333333333333333333333333333333

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.86  E-value=3.6e-10  Score=74.87  Aligned_cols=41  Identities=24%  Similarity=0.352  Sum_probs=16.7

Q ss_pred             HHhcCCceeecCccccccCCchhhhhccchhccCcceecCc
Q psy2838         229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEE  269 (458)
Q Consensus       229 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~  269 (458)
                      ++|.++++|.|.+|++.|.+...|..|+++|+++++|.|..
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             cCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            33333444444444444444444444444333334444433

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4e-10  Score=74.66  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=14.2

Q ss_pred             hcCCceeecCccccccCCchhhhhccchhccCcceecC
Q psy2838         231 AHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCE  268 (458)
Q Consensus       231 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~  268 (458)
                      |.++++|.|.+|++.|.+...|..|+++|+++++|.|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS   44 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            33333333333333333333333333333333333333

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.86  E-value=3.3e-10  Score=75.10  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=7.7

Q ss_pred             cccccCccccCChHHHHHHHHH
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNS  230 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~  230 (458)
                      |.|.+|++.|.....|..|+++
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ely_A           13 FKCVECGKGFSRRSALNVHHKL   34 (46)
T ss_dssp             BCCSSSCCCBSSTTHHHHHHHH
T ss_pred             cccCccCcccCCHHHHHHHHHH
Confidence            3333333333333333333333

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=3.9e-10  Score=74.73  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=14.4

Q ss_pred             hcCCceeecCccccccCCchhhhhccchhccCcceecC
Q psy2838         231 AHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCE  268 (458)
Q Consensus       231 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~  268 (458)
                      |.++++|.|.+|++.|.+...|..|+++|+++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33333333333333333333333333333333333333

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.2e-10  Score=74.11  Aligned_cols=44  Identities=16%  Similarity=0.250  Sum_probs=25.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|.++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44555555555555555555555555555555555555555554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=7.7e-10  Score=73.57  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHh-hccCCCccccCcC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTL-SVHSGVRLTCRTC  354 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~~h~~~~~~C~~C  354 (458)
                      |+++|.++++|.|..|++.|.+...|..|++ .|.++++|.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            5666677777777777777777777777766 5666666667665

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.2e-09  Score=75.08  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             hccCccccCccccccCCCHHHHHHHHh-hccCCCccccCcCcccCC
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTL-SVHSGVRLTCRTCGLFCD  359 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~-~~h~~~~~~C~~C~~~f~  359 (458)
                      |.++++|.|..|++.|.+...|.+|++ .|.++++|.|.+|++.|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            344455555555555555555555544 344444555555555554

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.6e-10  Score=74.86  Aligned_cols=19  Identities=47%  Similarity=1.030  Sum_probs=6.7

Q ss_pred             eecCcccccccCHHHHHHH
Q psy2838         265 YKCEECTKTFAQKQNLLSH  283 (458)
Q Consensus       265 ~~C~~C~~~f~~~~~L~~H  283 (458)
                      |.|..|++.|.+...|..|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H   31 (46)
T 2eq0_A           13 YKCHECGKVFRRNSHLARH   31 (46)
T ss_dssp             EECTTTCCEESSHHHHHHH
T ss_pred             eECCCCCchhCCHHHHHHH
Confidence            3333333333333333333

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.85  E-value=4.4e-10  Score=74.43  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=16.0

Q ss_pred             HhcCCceeecCccccccCCchhhhhccchhccCcceecCc
Q psy2838         230 SAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEE  269 (458)
Q Consensus       230 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~  269 (458)
                      +|.++++|.|.+|++.|.+...|..|+++|+++++|.|.+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            3333344444444444444444444444333333444433

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.5e-10  Score=74.96  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=11.9

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecC
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD  240 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  240 (458)
                      |.|.+|++.|.....|..|+++|+++++|.|.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2epz_A           13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred             eECCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence            33333333333333333333333333333333

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.7e-10  Score=74.84  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=16.2

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCc
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEV  297 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~  297 (458)
                      +++|.++++|.|..|++.|.....|..|++.|.+.++|.|.+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            333333333444444444433333444433333333333333

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.1e-10  Score=74.13  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=17.8

Q ss_pred             HHHhcCCceeecCccccccCCchhhhhccchhccCcceecCc
Q psy2838         228 MNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEE  269 (458)
Q Consensus       228 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C~~  269 (458)
                      +++|.++++|.|.+|++.|.....|..|+++|+++++|.|..
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             TTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             ccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            333444444444444444444444444444444444444443

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.5e-10  Score=73.00  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=16.6

Q ss_pred             CCCccccccCccccCChHHHHHHHHHhcCCceeecCcc
Q psy2838         205 LGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHC  242 (458)
Q Consensus       205 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C  242 (458)
                      ++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            33344444444444444444444444444444444443

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.1e-09  Score=71.06  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44444445555555555555555555555444444444444444

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=9.1e-10  Score=72.91  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRT  353 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~  353 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4445555555555555555555555555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.7e-10  Score=74.28  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=7.5

Q ss_pred             eeecCccccccCCchhhhhcc
Q psy2838         236 RFKCDHCVKSFNQKPNLISHI  256 (458)
Q Consensus       236 ~~~C~~C~~~f~~~~~L~~H~  256 (458)
                      +|.|.+|++.|.....|..|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQ   32 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHH
T ss_pred             CeECCCcCcccCCHHHHHHHH
Confidence            333333333333333333333

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.7e-09  Score=70.57  Aligned_cols=44  Identities=20%  Similarity=0.134  Sum_probs=22.0

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|.+|++.|.....|..|++.|.+.++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444455555555555555555555555544444444444444

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=4.1e-10  Score=74.61  Aligned_cols=19  Identities=53%  Similarity=0.943  Sum_probs=6.7

Q ss_pred             eecCcccccccCHHHHHHH
Q psy2838         265 YKCEECTKTFAQKQNLLSH  283 (458)
Q Consensus       265 ~~C~~C~~~f~~~~~L~~H  283 (458)
                      |.|..|++.|.+...|..|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H   31 (46)
T 2ysp_A           13 YKCEKCGKGYNSKFNLDMH   31 (46)
T ss_dssp             EEETTTTEEESCHHHHHHH
T ss_pred             eECCCCCCccCCHHHHHHH
Confidence            3333333333333333333

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.82  E-value=2.5e-09  Score=70.75  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444444444444444444444444444333344444433

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.7e-09  Score=70.52  Aligned_cols=44  Identities=25%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444444444444444444444444444433444444433

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.7e-09  Score=70.51  Aligned_cols=42  Identities=24%  Similarity=0.285  Sum_probs=17.2

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecC
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE  296 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  296 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS   44 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            344444444444444444444444444444333333334433

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1e-09  Score=72.61  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=12.2

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecC
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD  240 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  240 (458)
                      |.|.+|++.|.....|.+|+++|+++++|.|.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytq_A           13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS   44 (46)
T ss_dssp             CBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred             cCCCccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence            33333333333333333333333333333333

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.8e-09  Score=70.47  Aligned_cols=44  Identities=20%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444444555555555555555555555444444444444443

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1e-09  Score=72.57  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=15.0

Q ss_pred             CCccccccCccccCChHHHHHHHHHhcCCceeecCc
Q psy2838         206 GVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDH  241 (458)
Q Consensus       206 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  241 (458)
                      +++|.|.+|++.|.....|..|+++|+++++|.|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            333444444444444444444444444444444443

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.9e-09  Score=70.36  Aligned_cols=44  Identities=23%  Similarity=0.212  Sum_probs=19.4

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44444444444444444444444444444443333333444433

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.6e-09  Score=70.61  Aligned_cols=42  Identities=24%  Similarity=0.226  Sum_probs=16.9

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecC
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE  296 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  296 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            333344444444444444444444444443333333333333

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=3.7e-09  Score=72.63  Aligned_cols=47  Identities=23%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHH-hhcCCCccccccCccccCC
Q psy2838         174 KGPPVKKFPCDQCGKSFTLKQNLTYHVN-SIHLGVRIKCDFCDKTFAH  220 (458)
Q Consensus       174 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~-~~h~~~~~~C~~C~~~f~~  220 (458)
                      .+.+.++|.|.+|++.|.....|..|++ .|..+++|.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            3455667777777777777777777765 4555566666666666654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.81  E-value=2.6e-09  Score=70.62  Aligned_cols=29  Identities=34%  Similarity=0.595  Sum_probs=10.9

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHH
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +++|.++++|.|..|++.|.....|..|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ema_A            4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQ   32 (46)
T ss_dssp             CSSCTTSCCEECSSSCCEESSHHHHHHHH
T ss_pred             ccCCCCCcCcCCCCCcchhCCHHHHHHHH
Confidence            33333333333333333333333333333

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.7e-09  Score=70.56  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=11.7

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHH
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      |+++|.++++|.|..|++.|.....|..|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQ   32 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHH
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHH
Confidence            333333333444444444443333333333

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.7e-09  Score=70.57  Aligned_cols=43  Identities=19%  Similarity=0.200  Sum_probs=18.0

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEV  297 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~  297 (458)
                      |+++|.++++|.|.+|++.|.+...|..|++.|++.++|.|.+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3444444444444444444444444444443333333344433

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.9e-09  Score=70.36  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            44444444444444444444444444444443333334444433

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.3e-09  Score=69.34  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=12.7

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCcc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCAD  325 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~  325 (458)
                      |.|.+|++.|.+...|..|+++|+++++|.|..
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A           11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            333333333333333333333333333444333

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=3e-09  Score=70.28  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=11.0

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHH
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +++|.++++|.|.+|++.|.+...|..|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eme_A            4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQ   32 (46)
T ss_dssp             CCTTCCCCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCeECCCCChhhCCHHHHHHHH
Confidence            33333333333333333333333333333

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=3.4e-09  Score=70.04  Aligned_cols=44  Identities=23%  Similarity=0.182  Sum_probs=19.7

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444444444444444444444444444333344444433

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.7e-09  Score=70.53  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=10.9

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHH
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +++|.++++|.|..|++.|.+...|..|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ep2_A            4 GSSGTGEKPYECSICGKSFTKKSQLHVHQ   32 (46)
T ss_dssp             SSCSSCCCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCcCcCCCCCCcccCCHHHHHHHH
Confidence            33333333333333333333333333333

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.4e-09  Score=71.91  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=12.2

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecC
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD  240 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  240 (458)
                      |.|.+|++.|.....|..|+++|+++++|.|.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2enc_A           13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS   44 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred             cCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence            33333333333333333333333333333333

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.7e-09  Score=70.51  Aligned_cols=29  Identities=38%  Similarity=0.589  Sum_probs=11.0

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHH
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +++|.++++|.|..|++.|.....|..|+
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2eoe_A            4 GSSGTGEKPYKCNECGKVFTQNSHLANHQ   32 (46)
T ss_dssp             SSCCCCCCSSEETTTTEECSSHHHHHHHH
T ss_pred             CCCCCCCCCeECCCcChhhCCHHHHHHHH
Confidence            33333333333333333333333333333

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.5e-09  Score=70.71  Aligned_cols=21  Identities=33%  Similarity=0.676  Sum_probs=7.5

Q ss_pred             cceecCcccccccCHHHHHHH
Q psy2838         263 IKYKCEECTKTFAQKQNLLSH  283 (458)
Q Consensus       263 ~~~~C~~C~~~f~~~~~L~~H  283 (458)
                      ++|.|.+|++.|.+...|..|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H   31 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQH   31 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHH
T ss_pred             CCeECCcCCCccCCHHHHHHH
Confidence            333333333333333333333

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.9e-09  Score=70.39  Aligned_cols=29  Identities=34%  Similarity=0.468  Sum_probs=11.1

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHH
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +++|.++++|.|..|++.|.+...|..|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2epw_A            4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQ   32 (46)
T ss_dssp             CCCCCCCCSEECSSSCCEESSSHHHHHHH
T ss_pred             cccCCCCCCeeCCCCCCccCCHHHHHHHH
Confidence            33333333333333333333333333333

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=3e-09  Score=70.31  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=9.8

Q ss_pred             cCcccCChhHHHHHHhhhccCccccCc
Q psy2838         298 CSKSYNQVTNLLSHMTTVHQAQKYKCA  324 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h~~~~~~~C~  324 (458)
                      |++.|.....|..|+++|+++++|.|+
T Consensus        18 C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eop_A           18 CGKSFSFNSQLIVHQRIHTGENPSGPS   44 (46)
T ss_dssp             TCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred             CCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            333333333333333333333333333

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.78  E-value=1.9e-09  Score=69.72  Aligned_cols=41  Identities=17%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.9e-09  Score=71.28  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            555566666666666666666666666666655555556554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.2e-09  Score=71.00  Aligned_cols=42  Identities=19%  Similarity=0.348  Sum_probs=27.0

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            555666666666666666666666666666666656666664

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=3.9e-09  Score=69.75  Aligned_cols=44  Identities=27%  Similarity=0.238  Sum_probs=19.5

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|++.++|.|.+|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            44444444444444444444444444444444333344444433

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.7e-09  Score=69.37  Aligned_cols=44  Identities=20%  Similarity=0.166  Sum_probs=20.0

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444444444444444444444444444444444444444443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=9.2e-10  Score=73.17  Aligned_cols=20  Identities=35%  Similarity=0.688  Sum_probs=7.1

Q ss_pred             cccccCccccCChHHHHHHH
Q psy2838         209 IKCDFCDKTFAHKPNLIAHM  228 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~  228 (458)
                      |.|.+|++.|.....|..|+
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~   32 (47)
T 2epx_A           13 YECIECGKAFIQNTSLIRHW   32 (47)
T ss_dssp             BCCSSSCCCBSSHHHHHHHH
T ss_pred             EECCccCchhCChHHHHHHh
Confidence            33333333333333333333

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.3e-09  Score=70.88  Aligned_cols=42  Identities=19%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555666666666666666666666665555555555554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.7e-09  Score=68.97  Aligned_cols=40  Identities=18%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             HhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         312 MTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       312 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      +++|.++++|.|..|++.|.+...|.+|++.|.++++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4445555555555555555555555555555444444544

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.5e-09  Score=70.74  Aligned_cols=42  Identities=17%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            555666666666666666666666666666665555566664

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.76  E-value=1.4e-09  Score=74.71  Aligned_cols=50  Identities=18%  Similarity=0.139  Sum_probs=30.2

Q ss_pred             cccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcc
Q psy2838         300 KSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRL  349 (458)
Q Consensus       300 ~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~  349 (458)
                      +.|.....|..|+++|+++++|.|..|++.|.+...|..|++.|+++.+|
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45555556666666666666666666666666666666666555554443

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.1e-09  Score=71.13  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=23.8

Q ss_pred             hhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      ++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345555555555555555555555555555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.2e-09  Score=70.98  Aligned_cols=42  Identities=21%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            455566666666666666666666666666555555555554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.75  E-value=1.8e-09  Score=71.46  Aligned_cols=42  Identities=19%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444444445555555555555555555554444444444443

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.9e-09  Score=71.28  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|+|..|++.|.+...|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555555554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=3.5e-09  Score=69.66  Aligned_cols=41  Identities=22%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCG  355 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~  355 (458)
                      |+++++|.|..|++.|.+...|.+|++.|+++++|.|+.||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            44455555555555555555555555555555555555553

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.9e-09  Score=71.24  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            444444455555555555555555555554444444444443

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.9e-09  Score=70.42  Aligned_cols=42  Identities=19%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            455666666666666666666666666666666666666665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.9e-09  Score=70.35  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555666666666666666666666665555555555554

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.7e-09  Score=70.58  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=23.7

Q ss_pred             hhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      ++|.++++|.|..|++.|.+...|..|++.|+++++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345555555555555555555555555555555555555554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.7e-09  Score=70.59  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455556666666666666666666666665555555555554

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.6e-09  Score=69.39  Aligned_cols=25  Identities=36%  Similarity=0.808  Sum_probs=9.2

Q ss_pred             hccCcceecCcccccccCHHHHHHH
Q psy2838         259 VHEGIKYKCEECTKTFAQKQNLLSH  283 (458)
Q Consensus       259 ~~~~~~~~C~~C~~~f~~~~~L~~H  283 (458)
                      |.++++|.|..|++.|.+...|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H   31 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTH   31 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHH
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHH
Confidence            3333333333333333333333333

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.4e-09  Score=70.84  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|+|..|++.|.+...|.+|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            444455555555555555555555555555444444444443

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.5e-09  Score=70.69  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=25.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555566666666666666666666666666555555555554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.3e-09  Score=70.83  Aligned_cols=42  Identities=19%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            555566666666666666666666666666555555556554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=7.1e-09  Score=68.48  Aligned_cols=44  Identities=20%  Similarity=0.149  Sum_probs=19.8

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCcc
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVC  298 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  298 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34444444444444444444444444444444444444444443

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=70.93  Aligned_cols=42  Identities=12%  Similarity=0.260  Sum_probs=23.0

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555555554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=6.5e-09  Score=68.64  Aligned_cols=41  Identities=20%  Similarity=0.132  Sum_probs=16.2

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecC
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE  296 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  296 (458)
                      +++|.++++|.|..|++.|.....|..|++.|.+.++|.|.
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS   44 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33333334444444444444444444443333333333333

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.9e-09  Score=70.37  Aligned_cols=42  Identities=21%  Similarity=0.377  Sum_probs=23.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            455555555555555555555555555555555555555554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.8e-09  Score=69.64  Aligned_cols=41  Identities=20%  Similarity=0.356  Sum_probs=25.9

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++.+|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            55566666666666666666666666666666555555655

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.74  E-value=4.9e-10  Score=79.57  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             HHHhhcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhc
Q psy2838         199 HVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISH  255 (458)
Q Consensus       199 H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H  255 (458)
                      |++.|.++++|.|..|++.|.....|.   ++|.++++|.|.+|++.|....++..+
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccccc
Confidence            444444555566666666665555554   556666666666666666655555443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=70.97  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            34444444444444444444444444444444444444444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=4.2e-09  Score=70.37  Aligned_cols=35  Identities=23%  Similarity=0.492  Sum_probs=16.6

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccccCcccc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCG  327 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~  327 (458)
                      |.|.+|++.|.....|..|+++|+++++|.|.+|+
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A           13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             eeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            44444444444444444444444444444444444

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.6e-09  Score=69.95  Aligned_cols=42  Identities=17%  Similarity=0.242  Sum_probs=23.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445555555555555555555555555555555555555553

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.5e-09  Score=70.68  Aligned_cols=42  Identities=21%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455555555666666666666666666665555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.1e-09  Score=71.13  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444445555555555554444444444444444444

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.3e-09  Score=70.10  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444455555555555555555555555555444444444443

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.7e-09  Score=69.70  Aligned_cols=41  Identities=15%  Similarity=0.334  Sum_probs=21.8

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|+++.+|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44455555555555555555555555555555444444544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=5.6e-09  Score=69.73  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGL  356 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~  356 (458)
                      |.++++|.|.+|++.|.+...|.+|++.|+++++|.|.+|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            566788899999999999999999988888888888888875

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3e-09  Score=69.55  Aligned_cols=41  Identities=17%  Similarity=0.454  Sum_probs=26.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            55666666666666666666666666666666555555655

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.6e-09  Score=70.61  Aligned_cols=42  Identities=17%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            444444555555555555555555555554444444444443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.6e-09  Score=70.64  Aligned_cols=41  Identities=24%  Similarity=0.429  Sum_probs=19.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|+|..|++.|.+...|.+|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            44444444445555555555444444444444444444444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.6e-09  Score=69.00  Aligned_cols=41  Identities=20%  Similarity=0.376  Sum_probs=26.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55566666666666666666666666666666666666655

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.71  E-value=2.2e-09  Score=69.45  Aligned_cols=29  Identities=28%  Similarity=0.490  Sum_probs=10.5

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCcee
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRF  237 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  237 (458)
                      |.|.+|++.|.....|..|+++|+++++|
T Consensus        11 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2el5_A           11 YECSECGKAFNRKDQLISHQRTHAGESGP   39 (42)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGGCCCCSC
T ss_pred             ccCCCcChhhCCHHHHHHHHHhcCCCCCC
Confidence            33333333333333333333333333333

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=4.1e-09  Score=68.12  Aligned_cols=41  Identities=20%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|.++++|.|..|++.|.+...|.+|++.|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45556666666666666666666666666666555555555

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=2.8e-09  Score=69.74  Aligned_cols=41  Identities=20%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44455555555555555555555555555555444444444

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.1e-08  Score=67.57  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=17.4

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecC
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE  296 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  296 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            333344444444444444444444444444333333334433

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.4e-09  Score=70.84  Aligned_cols=23  Identities=35%  Similarity=0.804  Sum_probs=8.2

Q ss_pred             ceeecCccccccCCchhhhhccc
Q psy2838         235 VRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       235 ~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      ++|.|.+|++.|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            33333333333333333333333

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3.6e-09  Score=69.88  Aligned_cols=42  Identities=19%  Similarity=0.333  Sum_probs=26.0

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            555666666666666666666666666666655555556554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.69  E-value=3e-09  Score=75.43  Aligned_cols=52  Identities=15%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             hhhccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChh
Q psy2838         252 LISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVT  306 (458)
Q Consensus       252 L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~  306 (458)
                      |..|+++|.++++|.|+.|++.|.....|.   +.|.+.++|.|.+|++.|....
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDE   53 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECT
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCc
Confidence            455666666666666666666666655554   3444445566666666555444

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.5e-09  Score=70.67  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=11.3

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeec
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC  239 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  239 (458)
                      |.|.+|++.|.....|..|+++|+++++|.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep0_A           13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             EECSSSCCEESSHHHHHHHHTTTSSSCCCSC
T ss_pred             eeCcccCcccCChHHHHHHHHHhCCCCCCCC
Confidence            3333333333333333333333333333333

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=4.5e-09  Score=68.68  Aligned_cols=41  Identities=17%  Similarity=0.356  Sum_probs=25.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++.+|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            55556666666666666666666666666655555555555

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3e-09  Score=70.27  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=16.4

Q ss_pred             HHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       229 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++|.++++|.|..|++.|.....|..|+++|+++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            334444444444444444444444444444444444444

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3.5e-09  Score=70.01  Aligned_cols=42  Identities=17%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444455555555555555555555555555554444445443

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=2.9e-09  Score=70.44  Aligned_cols=39  Identities=21%  Similarity=0.312  Sum_probs=16.8

Q ss_pred             HHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       229 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++|.++++|.|.+|++.|.....|.+|+++|+++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            334444444444444444444444444444444444444

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=3e-09  Score=70.28  Aligned_cols=22  Identities=45%  Similarity=0.825  Sum_probs=8.1

Q ss_pred             cceecCcccccccCHHHHHHHH
Q psy2838         263 IKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       263 ~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      ++|.|..|++.|.+...|..|+
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQ   32 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHH
Confidence            3333333333333333333333

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.6e-09  Score=68.98  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=25.5

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++++|.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445566666666666666666666666666555555555554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=9.9e-09  Score=75.76  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             chhhhhccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhccCc
Q psy2838         249 KPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ  319 (458)
Q Consensus       249 ~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~  319 (458)
                      +..|..|++++.+.+++.|..|++.|. ...|..|+ .+.+.+++.|+.|++.|. ...|..|+++|.+++
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            456888988888889999999999994 88899997 777888899999999877 488899998887653

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=4.3e-09  Score=69.57  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccC-CCccccC
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS-GVRLTCR  352 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~-~~~~~C~  352 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+ +++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45556666666666666666666666666555555 5555554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3e-09  Score=70.29  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=10.4

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCcee
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRF  237 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  237 (458)
                      |.|.+|++.|.....|..|+++|.++++|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq2_A           13 YQCNECGKAFSQTSKLARHQRVHTGEKPS   41 (46)
T ss_dssp             SSCCSSCCCCSSHHHHHHHGGGGCCCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            33333333333333333333333333333

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.5e-09  Score=69.99  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=12.4

Q ss_pred             CCceeecCccccccCCchhhhhccchhccCccee
Q psy2838         233 NGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYK  266 (458)
Q Consensus       233 ~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~  266 (458)
                      ++++|.|..|++.|.+...|..|+++|+++++|.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG   42 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSS
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            3333333333333333333333333333333333

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3.2e-09  Score=70.21  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=10.9

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceee
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFK  238 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  238 (458)
                      |.|.+|++.|.....|..|+++|+++++|.
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2em6_A           13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSG   42 (46)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHTTTSSSCCCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCCCCC
Confidence            333333333333333333333333333333

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=2e-08  Score=65.88  Aligned_cols=41  Identities=27%  Similarity=0.433  Sum_probs=24.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCc
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCD  215 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~  215 (458)
                      |.++++|.|.+|++.|.....|..|++.|+.+++|.|++||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            34455666666666666666666666655555556665554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3.3e-09  Score=70.10  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=11.9

Q ss_pred             CceeecCccccccCCchhhhhccchhccCccee
Q psy2838         234 GVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYK  266 (458)
Q Consensus       234 ~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~  266 (458)
                      +++|.|.+|++.|.....|..|+++|+++++|.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG   42 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTTTSSCCSSC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            333333333333333333333333333333333

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.66  E-value=6.1e-09  Score=67.22  Aligned_cols=40  Identities=23%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             HhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         312 MTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       312 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      +++|.++++|.|..|++.|.+...|..|++.|.++++|.|
T Consensus         3 ~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            3444444445555555555444444444444444444443

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3.8e-09  Score=68.24  Aligned_cols=41  Identities=29%  Similarity=0.453  Sum_probs=23.3

Q ss_pred             HHHHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         227 HMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       227 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      |+++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            44455555555555555555555555555555555555554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=4.5e-09  Score=67.91  Aligned_cols=41  Identities=27%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            34445555555555555555555555555555544444444

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=4.1e-09  Score=69.66  Aligned_cols=41  Identities=22%  Similarity=0.295  Sum_probs=19.8

Q ss_pred             HHHhcCCceeecCccccccCCchhhhhccchhcc-CcceecC
Q psy2838         228 MNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHE-GIKYKCE  268 (458)
Q Consensus       228 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~-~~~~~C~  268 (458)
                      +++|.++++|.|.+|++.|.....|..|+++|++ +++|.|.
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3444444445555555555555555555444444 4444443

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=3.2e-09  Score=70.16  Aligned_cols=41  Identities=17%  Similarity=0.228  Sum_probs=18.7

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|.+|++.|+++.+|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            34444444444444444444444444444444444444444

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=7.2e-09  Score=68.43  Aligned_cols=31  Identities=32%  Similarity=0.456  Sum_probs=12.1

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeec
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC  239 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  239 (458)
                      |.|.+|++.|.....|..|+++|+++++|.|
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A           13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             EECCccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3333333333333333333333333333333

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=9.7e-09  Score=67.10  Aligned_cols=40  Identities=15%  Similarity=0.305  Sum_probs=18.3

Q ss_pred             HhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         312 MTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       312 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      +++|.++++|.|..|++.|.+...|..|++.|.++++|.|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=4.4e-09  Score=68.76  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=9.1

Q ss_pred             CCceeecCccccccCCchhhhhccc
Q psy2838         233 NGVRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       233 ~~~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      ++++|.|.+|++.|.....|..|++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhH
Confidence            3333333333333333333333333

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5.6e-09  Score=68.99  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=18.9

Q ss_pred             HHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       229 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            344444444555555555444444445444444444444

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.63  E-value=2.1e-08  Score=66.12  Aligned_cols=41  Identities=20%  Similarity=0.224  Sum_probs=18.3

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444333333444

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7.2e-09  Score=68.41  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=13.7

Q ss_pred             CccccccCccccCChHHHHHHHHHhcCCceeec
Q psy2838         207 VRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC  239 (458)
Q Consensus       207 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  239 (458)
                      ++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             cCeECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            334444444444444444444444444444443

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.2e-08  Score=65.98  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=18.4

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|++.++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444333334444

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.3e-08  Score=65.93  Aligned_cols=41  Identities=24%  Similarity=0.256  Sum_probs=18.3

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|.+.++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            44444444444444444444444444444444333334444

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1e-08  Score=66.99  Aligned_cols=41  Identities=17%  Similarity=0.325  Sum_probs=24.5

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            45556666666666666666666666666655555555554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=4.5e-09  Score=67.92  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=17.2

Q ss_pred             HHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       229 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            334444444444444444444444444444444444433

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=5.5e-09  Score=68.27  Aligned_cols=39  Identities=28%  Similarity=0.530  Sum_probs=16.0

Q ss_pred             HHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       229 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      ++|.++++|.|..|++.|.....|..|+++|.++++|.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            333344444444444444444444444444333344433

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.61  E-value=2.4e-08  Score=68.50  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=25.3

Q ss_pred             cccCCchhhhhccchhccCcceecCcccccccCHHHHHHHHHHhhcC
Q psy2838         244 KSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG  290 (458)
Q Consensus       244 ~~f~~~~~L~~H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  290 (458)
                      +.|.....|..|+++|.++++|.|..|++.|.....|..|++.|+++
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   50 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            34555555555555555555555555555555555555555444433

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.8e-08  Score=65.44  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=18.2

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|.+.++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            44444444444444444444444444444444433334444

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.3e-09  Score=68.79  Aligned_cols=41  Identities=17%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++|+++++|.|..|++.|.+...|..|++.|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44445555555555555555555555555544444444444

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.8e-08  Score=65.54  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=17.1

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|.+.++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            33444444444444444444444444444433333333433

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.2e-08  Score=66.05  Aligned_cols=22  Identities=45%  Similarity=0.927  Sum_probs=8.0

Q ss_pred             CcceecCcccccccCHHHHHHH
Q psy2838         262 GIKYKCEECTKTFAQKQNLLSH  283 (458)
Q Consensus       262 ~~~~~C~~C~~~f~~~~~L~~H  283 (458)
                      +++|.|..|++.|.....|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H   31 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRH   31 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHH
Confidence            3333333333333333333333

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.6e-09  Score=67.88  Aligned_cols=27  Identities=37%  Similarity=0.604  Sum_probs=10.5

Q ss_pred             hccCcceecCcccccccCHHHHHHHHH
Q psy2838         259 VHEGIKYKCEECTKTFAQKQNLLSHVQ  285 (458)
Q Consensus       259 ~~~~~~~~C~~C~~~f~~~~~L~~H~~  285 (458)
                      |.++++|.|..|++.|.+...|..|++
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTH
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHH
Confidence            333333333333333333333333333

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.7e-08  Score=65.61  Aligned_cols=41  Identities=27%  Similarity=0.316  Sum_probs=25.4

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccC
Q psy2838         174 KGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFC  214 (458)
Q Consensus       174 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  214 (458)
                      .|.+.++|.|.+|++.|.....|..|++.|+++++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555666666666666666666666666555566666655

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.5e-08  Score=65.75  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=19.1

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|++.++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=2.5e-08  Score=65.75  Aligned_cols=30  Identities=30%  Similarity=0.507  Sum_probs=11.5

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHH
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      |+++|.++++|.|..|++.|.+...|..|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQ   32 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHH
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHH
Confidence            333333333333333333333333333333

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.3e-08  Score=63.66  Aligned_cols=42  Identities=10%  Similarity=0.105  Sum_probs=38.2

Q ss_pred             HHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCcccC
Q psy2838         339 HTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKR  380 (458)
Q Consensus       339 H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~  380 (458)
                      |++.|.++++|.|..|++.|..+..|.+|++.|+++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777888999999999999999999999999999999883

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.4e-08  Score=65.82  Aligned_cols=29  Identities=34%  Similarity=0.587  Sum_probs=11.1

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHH
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      +++|.++++|.|..|++.|.+...|..|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ytf_A            4 GSSGTGEKPFECSECQKAFNTKSNLIVHQ   32 (46)
T ss_dssp             CCSSCCCCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCCCCcccCCHHHHHHHH
Confidence            33333333333333333333333333333

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.4e-08  Score=67.69  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=25.0

Q ss_pred             HhhhccCccccCc--cccccCCCHHHHHHHHhhccCCCccccCcC
Q psy2838         312 MTTVHQAQKYKCA--DCGRLFAQEHTLRTHTLSVHSGVRLTCRTC  354 (458)
Q Consensus       312 ~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C  354 (458)
                      .++|+++++|+|.  .|++.|.+...|.+|++.|.++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445555666665  566666666666666555555555556555

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.3e-08  Score=65.16  Aligned_cols=41  Identities=27%  Similarity=0.260  Sum_probs=17.3

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            33444444444444444444444444444433333333443

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=6.3e-09  Score=67.99  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=20.1

Q ss_pred             HHHHhcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         227 HMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       227 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      |+++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            34444444555555555555555555555554444444444

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.2e-08  Score=64.44  Aligned_cols=41  Identities=27%  Similarity=0.368  Sum_probs=17.2

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.+...|..|++.|.+.++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            34444444444444444444444444444433333333333

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.8e-08  Score=66.56  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=15.2

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++++|+|..|++.|.+...|..|++.|+++++|.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            3334444444444444444444444433333333333

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.4e-08  Score=65.12  Aligned_cols=41  Identities=27%  Similarity=0.295  Sum_probs=17.8

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|.+.++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            44444444444444444444444444444443333333433

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.6e-08  Score=64.97  Aligned_cols=42  Identities=14%  Similarity=0.050  Sum_probs=39.0

Q ss_pred             HHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCcccC
Q psy2838         339 HTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKR  380 (458)
Q Consensus       339 H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~  380 (458)
                      |++.|.++++|.|..|++.|..+..|.+|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            677788888999999999999999999999999999999985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=4e-08  Score=64.73  Aligned_cols=41  Identities=22%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|...++|.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444444444444

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.5e-08  Score=66.49  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             hhccCccccCccccccCCCHHHHHHHHhhccCCCccccC
Q psy2838         314 TVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCR  352 (458)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~  352 (458)
                      +|.++++|.|..|++.|.+...|.+|++.|+++++|.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555544444445443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.4e-08  Score=66.99  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=12.6

Q ss_pred             ccccccCccccCChHHHHHHHHHhcCCceeec
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC  239 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  239 (458)
                      +|.|.+|++.|.....|..|+++|+++++|.|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             CeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            33333333333333333333333333333333

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.1e-09  Score=79.37  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=53.8

Q ss_pred             hHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         306 TNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       306 ~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      ..|..|+++|.+.+++.|..|++.|. ...|..|+ .+.+.+++.|+.|++.|. ...|..|++.+.+.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            35677888888889999999998884 88899997 777788888999999877 48888998877653

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=3.2e-08  Score=65.21  Aligned_cols=44  Identities=16%  Similarity=0.123  Sum_probs=40.1

Q ss_pred             HHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCcccCC
Q psy2838         338 THTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKRG  381 (458)
Q Consensus       338 ~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~~  381 (458)
                      .|++.|.+.++|.|..|++.|..+..|.+|++.|+++++|.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47777888889999999999999999999999999999999963

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=4e-08  Score=63.74  Aligned_cols=35  Identities=29%  Similarity=0.531  Sum_probs=13.4

Q ss_pred             cCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         317 QAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       317 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      ++++|.|..|++.|.+...|..|++.|+++++|.|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            33333333333333333333333333333333333

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=3.4e-08  Score=64.35  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             HHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCcccC
Q psy2838         338 THTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKR  380 (458)
Q Consensus       338 ~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~  380 (458)
                      +|++.|.+.++|.|..|++.|..+..|..|++.|+++.+|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            4777788888999999999999999999999999999999884

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4e-08  Score=64.76  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=18.0

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHHHhhcCceeec
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTC  295 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  295 (458)
                      |+++|.++++|.|..|++.|.....|..|++.|...++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            44444444444444444444444444444444333333443

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.2e-08  Score=66.62  Aligned_cols=25  Identities=36%  Similarity=0.647  Sum_probs=9.4

Q ss_pred             ccCcceecCcccccccCHHHHHHHH
Q psy2838         260 HEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       260 ~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      .++++|.|.+|++.|.....|..|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~   32 (44)
T 2epv_A            8 SGEKPYECNECGKAFIWKSLLIVHE   32 (44)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCcCeECCCCCcccCchHHHHHHH
Confidence            3333333333333333333333333

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.3e-08  Score=67.71  Aligned_cols=27  Identities=19%  Similarity=0.123  Sum_probs=10.1

Q ss_pred             cccccCCchhhhhccchhccCcceecC
Q psy2838         242 CVKSFNQKPNLISHIKSVHEGIKYKCE  268 (458)
Q Consensus       242 C~~~f~~~~~L~~H~~~~~~~~~~~C~  268 (458)
                      |++.|.....|..|+++|.++++|+|.
T Consensus        20 C~k~f~~~~~L~~H~~~H~~~k~~~C~   46 (48)
T 2ent_A           20 CGWRFSRSDELSRHRRSHSGVKPSGPS   46 (48)
T ss_dssp             CCCEESSHHHHHHHHTTSCCCCSCSSC
T ss_pred             CCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            333333333333333333333333333

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=6.5e-08  Score=63.03  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             HHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCcccC
Q psy2838         339 HTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKR  380 (458)
Q Consensus       339 H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~  380 (458)
                      |++.|.++++|.|..|++.|.....|..|++.|+++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            667777888999999999999999999999999999999884

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.51  E-value=5.2e-08  Score=62.70  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             HHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCccc
Q psy2838         339 HTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKK  379 (458)
Q Consensus       339 H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~  379 (458)
                      |++.|.++++|.|..|++.|..+..|..|++.|+++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            56677778899999999999999999999999999999887

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=5e-08  Score=62.47  Aligned_cols=37  Identities=22%  Similarity=0.412  Sum_probs=18.0

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |+++++|.|..|++.|.+...|..|++.|+++++|.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4444455555555555555555555444444444443

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=7.1e-08  Score=62.54  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=14.9

Q ss_pred             CCcccccccccccCCHHHHHHHHHhhcCCCcccc
Q psy2838         178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKC  211 (458)
Q Consensus       178 ~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  211 (458)
                      .++|.|..|++.|.....|..|++.|+++++|.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            3444444444444444444444444444444444

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=1.7e-08  Score=66.31  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=12.0

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeec
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKC  239 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  239 (458)
                      |.|.+|++.|.....|..|+++|+++++|.|
T Consensus        13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A           13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             ccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            3333333333333333333333333333333

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=5.2e-08  Score=62.41  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=16.4

Q ss_pred             hcCCceeecCccccccCCchhhhhccchhccCcceec
Q psy2838         231 AHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKC  267 (458)
Q Consensus       231 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~C  267 (458)
                      |.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3344444444444444444444444444444444443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.4e-07  Score=62.03  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=37.4

Q ss_pred             HhhccCCCccccCcCcccCCCHHHHHHHHHHhCCCCCcccC
Q psy2838         340 TLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCEYKKR  380 (458)
Q Consensus       340 ~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~~~  380 (458)
                      ++.|.+.++|.|..|++.|..+..|..|++.|+++++|.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            35667788899999999999999999999999999999995

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.36  E-value=1.5e-07  Score=58.55  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |+++|.++++|.|+.|++.|.+...|..|++.|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            5666777777777777777777777777766554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.36  E-value=4.1e-08  Score=74.74  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             cchhccCcceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccCChhHHHHHHhhhcc
Q psy2838         256 IKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       256 ~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      .++|.++++|.|..|++.|.....|..|++.|.+.++|.|..|.+    ...|..|.++|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            344666677777777777777777777776666666677665443    3345555555554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.30  E-value=6.5e-08  Score=73.65  Aligned_cols=55  Identities=16%  Similarity=0.319  Sum_probs=33.9

Q ss_pred             hcCCCccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccchhcc
Q psy2838         203 IHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHE  261 (458)
Q Consensus       203 ~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~  261 (458)
                      |.++++|.|.+|++.|.....|..|+++|+++++|+|..|.    ....|..|.+.+.+
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            44455566666666666666666666666666777775543    34556666665544

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=3.2e-07  Score=57.02  Aligned_cols=30  Identities=20%  Similarity=0.604  Sum_probs=14.2

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |.++++|.|..|++.|.+...|..|++.|+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            444444444444444444444444444433

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.24  E-value=5.5e-07  Score=56.75  Aligned_cols=29  Identities=24%  Similarity=0.597  Sum_probs=11.6

Q ss_pred             eecCccCcccCChhHHHHHHhhhccCccc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      |.|.+|++.|.....|..|+++|+++++|
T Consensus         7 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A            7 YTCSFCKREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTCCSCTT
T ss_pred             eECCCCCcccCCHHHHHHHHHHcCCCccc
Confidence            34444444444444444444444333333

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.22  E-value=7e-07  Score=56.25  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=27.8

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhccCCCcccc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTC  351 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C  351 (458)
                      |.++++|.|..|++.|.+...|..|++.|.++++|.|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4567788888888888888888888777777766654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.17  E-value=8.1e-07  Score=54.28  Aligned_cols=28  Identities=32%  Similarity=0.534  Sum_probs=12.4

Q ss_pred             ccCccccCccccccCCCHHHHHHHHhhc
Q psy2838         316 HQAQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       316 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      .++++|.|..|++.|.+...|..|++.|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h   30 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREV   30 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHH
Confidence            3344444444444444444444444433

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.17  E-value=1.2e-06  Score=52.92  Aligned_cols=31  Identities=23%  Similarity=0.485  Sum_probs=18.8

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccCcccc
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYK  322 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~  322 (458)
                      +|.|.+|++.|.....|..|+++|+++++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            3556666666666666666666666665553

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.15  E-value=1.1e-06  Score=53.67  Aligned_cols=30  Identities=13%  Similarity=0.224  Sum_probs=15.5

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |.++++|.|..|++.|.+...|.+|++.|+
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            344555555555555555555555544443

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.13  E-value=1.2e-06  Score=54.36  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             HHhhccCCCccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         339 HTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       339 H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      |++.|.++++|.|..|++.|.....|..|++.|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            66778888899999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.11  E-value=2e-06  Score=51.90  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=17.0

Q ss_pred             ccccccCccccCChHHHHHHHHHhcCCcee
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMNSAHNGVRF  237 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  237 (458)
                      +|.|.+|++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            355555555555555555555555555554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.6e-06  Score=53.69  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=30.9

Q ss_pred             hhccCCCccccCcCcccCCCHHHHHHHHHHhCCCC
Q psy2838         341 LSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC  375 (458)
Q Consensus       341 ~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~  375 (458)
                      +.|.++++|.|..|++.|..+..|..|++.|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            35667788999999999999999999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.10  E-value=1.1e-06  Score=54.31  Aligned_cols=25  Identities=28%  Similarity=0.684  Sum_probs=17.4

Q ss_pred             ccCccccCccccccCCCHHHHHHHH
Q psy2838         316 HQAQKYKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       316 ~~~~~~~C~~C~~~f~~~~~L~~H~  340 (458)
                      .+++||+|..|+++|.+.++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4566777777777777777777775

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=2.1e-06  Score=60.68  Aligned_cols=35  Identities=11%  Similarity=0.030  Sum_probs=15.9

Q ss_pred             CCCccccCc--CcccCCCHHHHHHHH-HHhCCCCCccc
Q psy2838         345 SGVRLTCRT--CGLFCDSKRALTAHV-REAHPGCEYKK  379 (458)
Q Consensus       345 ~~~~~~C~~--C~~~f~~~~~L~~H~-~~~h~~~~~~~  379 (458)
                      ++++|+|..  |+++|....+|.+|+ +.|.+++||.|
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            334444432  444444444444444 33444444444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=1.2e-06  Score=54.40  Aligned_cols=31  Identities=16%  Similarity=0.339  Sum_probs=18.5

Q ss_pred             hhhccCccccCccccccCCCHHHHHHH-Hhhc
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTH-TLSV  343 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~~  343 (458)
                      ++|++++||+|..|++.|.+...|..| ++.|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            345566666666666666666666666 4433

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.03  E-value=3.3e-06  Score=59.69  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             CCCCcccccc--cccccCCHHHHHHHH-HhhcCCCccccc
Q psy2838         176 PPVKKFPCDQ--CGKSFTLKQNLTYHV-NSIHLGVRIKCD  212 (458)
Q Consensus       176 ~~~k~~~C~~--C~~~f~~~~~L~~H~-~~~h~~~~~~C~  212 (458)
                      .++|||+|..  |++.|...++|..|+ +.|.+++++.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            4456666643  666666666666665 345555555553

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.03  E-value=1.7e-06  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=8.8

Q ss_pred             cccccCccccCChHHHHHHHHHh
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSA  231 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h  231 (458)
                      |.|.+|++.|.....|..|+++|
T Consensus         8 ~~C~~C~k~f~~~~~l~~H~~~H   30 (35)
T 1srk_A            8 FVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             EECSSSCCEESSHHHHHHHHGGG
T ss_pred             eeCCCCCcccCCHHHHHHHHHHc
Confidence            33333333333333333333333

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.03  E-value=3.4e-06  Score=51.34  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             ccCCCccccCcCcccCCCHHHHHHHHHHhCCCC
Q psy2838         343 VHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC  375 (458)
Q Consensus       343 ~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~  375 (458)
                      |.++++|.|..|++.|..+..|..|++.|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            456778999999999999999999999998764

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=2.4e-06  Score=53.53  Aligned_cols=27  Identities=19%  Similarity=0.310  Sum_probs=12.0

Q ss_pred             ccCccccCcc--ccccCCCHHHHHHHHhh
Q psy2838         316 HQAQKYKCAD--CGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       316 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~  342 (458)
                      ++++||+|+.  |++.|.+++.|.+|+++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            3444444443  44444444444444433

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.1e-06  Score=52.07  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=15.1

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      |.++++|+|..|++.|.+...|..|++.|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHS
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            44455555555555555555555554443

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=2.9e-06  Score=52.18  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=16.5

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      |.++++|.|..|++.|.+...|..|++.|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVH   32 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHh
Confidence            44555566666666666666666665444

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=3.2e-06  Score=51.89  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=13.0

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhh
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      |.++++|.|..|++.|.....|..|++.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            3344444444444444444444444443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.96  E-value=4.8e-06  Score=51.34  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             CCCCcccccccccccCCHHHHHHHH
Q psy2838         176 PPVKKFPCDQCGKSFTLKQNLTYHV  200 (458)
Q Consensus       176 ~~~k~~~C~~C~~~f~~~~~L~~H~  200 (458)
                      .+++||+|..|++.|...++|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4567777777777777777777776

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=2.4e-06  Score=52.89  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=14.3

Q ss_pred             hccCccccCccccccCCCH-HHHHHHHhhc
Q psy2838         315 VHQAQKYKCADCGRLFAQE-HTLRTHTLSV  343 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~-~~L~~H~~~~  343 (458)
                      |.++++|.|..|++.|.+. ..|..|++.|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            4444555555555555554 5555554443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=5.4e-06  Score=50.83  Aligned_cols=27  Identities=30%  Similarity=0.618  Sum_probs=12.3

Q ss_pred             ccCccccCccccccCCCHHHHHHHHhh
Q psy2838         316 HQAQKYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       316 ~~~~~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      .++++|.|..|++.|.+...|..|++.
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            334444444444444444444444433

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=9.8e-06  Score=50.66  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=19.0

Q ss_pred             CCCCCcccccc--cccccCCHHHHHHHHHhhc
Q psy2838         175 GPPVKKFPCDQ--CGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       175 ~~~~k~~~C~~--C~~~f~~~~~L~~H~~~~h  204 (458)
                      +.+++||+|..  |++.|...+.|..|++.|.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            34556677764  7777776666666666544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.90  E-value=4.4e-06  Score=55.35  Aligned_cols=27  Identities=22%  Similarity=0.524  Sum_probs=12.6

Q ss_pred             hccCccccCccccccCCCHHHHHHHHh
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      |+++++|.|.+|++.|.+...|.+|++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhh
Confidence            344444444444444444444444444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.89  E-value=5.1e-06  Score=51.72  Aligned_cols=14  Identities=43%  Similarity=0.923  Sum_probs=5.0

Q ss_pred             ccccCCCHHHHHHH
Q psy2838         326 CGRLFAQEHTLRTH  339 (458)
Q Consensus       326 C~~~f~~~~~L~~H  339 (458)
                      |++.|.+...|.+|
T Consensus        14 C~k~f~~~~~L~~H   27 (38)
T 1bhi_A           14 CGQRFTNEDHLAVH   27 (38)
T ss_dssp             TCCEESSHHHHHHH
T ss_pred             CCcccCCHHHHHHH
Confidence            33333333333333

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=1.1e-05  Score=49.55  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=21.0

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHHhhc
Q psy2838         174 KGPPVKKFPCDQCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       174 ~~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h  204 (458)
                      .|.+.++|+|.+|++.|.....|..|++.|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            3455667777777777777777777776544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1.1e-05  Score=49.37  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcC
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~  205 (458)
                      |.+.++|.|.+|++.|.....|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4456677777777777777777777765543

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=1.6e-05  Score=48.62  Aligned_cols=31  Identities=35%  Similarity=0.506  Sum_probs=20.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcC
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~  205 (458)
                      |.+.++|.|.+|++.|.....|..|++.|.+
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            4455667777777777777777777665543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=7.1e-06  Score=50.34  Aligned_cols=24  Identities=25%  Similarity=0.715  Sum_probs=10.1

Q ss_pred             CccccCccccccCCCHHHHHHHHh
Q psy2838         318 AQKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       318 ~~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      +++|.|..|++.|.+...|..|++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHH
Confidence            334444444444444444444433

>1v65_A Riken cDNA 2610044O15; transcriptional repressor, heterochromatin, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.212.1.1

Probab=97.86  E-value=6.4e-07  Score=63.33  Aligned_cols=33  Identities=15%  Similarity=0.083  Sum_probs=30.8

Q ss_pred             cccceeeecchhHHHHHHHhcCCCcCCCCCCCC
Q psy2838          40 KSEYNYYQLSSDEKFEILKSISASFTPGYGGFL   72 (458)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   72 (458)
                      .++++|+||||+|+.+||.+|+++|+.+|++++
T Consensus         5 ~~~~~f~dva~~fs~eew~~l~~~qk~ly~~v~   37 (64)
T 1v65_A            5 SSGVTYDDVHMNFTEEEWDLLDSSQKRLYEEVM   37 (64)
T ss_dssp             CSCCCCCCCTTCCCHHHHHTSCHHHHHHHHHHH
T ss_pred             CCccccceeEEecCHHHHhCCCHHHhhheeehh
Confidence            467999999999999999999999999999984

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=1.1e-05  Score=49.49  Aligned_cols=30  Identities=17%  Similarity=0.331  Sum_probs=20.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhc
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h  204 (458)
                      |.+.++|+|.+|++.|.....|..|++.|.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            445567777777777777777777766443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=1.5e-05  Score=48.78  Aligned_cols=31  Identities=32%  Similarity=0.601  Sum_probs=20.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcC
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~  205 (458)
                      +.+.++|.|..|++.|.....|..|++.|.+
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            3455677777777777777777777765543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.81  E-value=2.5e-06  Score=51.08  Aligned_cols=31  Identities=29%  Similarity=0.503  Sum_probs=23.1

Q ss_pred             ceeecCccccccCCchhhhhccchhccCcce
Q psy2838         235 VRFKCDHCVKSFNQKPNLISHIKSVHEGIKY  265 (458)
Q Consensus       235 ~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~  265 (458)
                      +||.|..|++.|.....|..|+++|.++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            3677888888888777888887777776665

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.80  E-value=1.1e-05  Score=50.11  Aligned_cols=33  Identities=15%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             cCceeecC--ccCcccCChhHHHHHHhhhccCccc
Q psy2838         289 MGIKYTCE--VCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       289 ~~~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      +.++|.|.  .|++.|.....|..|+++|+++++|
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            34556777  3777777777777777777766665

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=1.4e-05  Score=49.36  Aligned_cols=30  Identities=20%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             CCCCCcccccccccccCCH-HHHHHHHHhhc
Q psy2838         175 GPPVKKFPCDQCGKSFTLK-QNLTYHVNSIH  204 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~-~~L~~H~~~~h  204 (458)
                      |.+.++|+|..|++.|... ..|..|++.|.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            4455666666666666666 66666666544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.77  E-value=1.5e-06  Score=52.02  Aligned_cols=30  Identities=20%  Similarity=0.488  Sum_probs=18.4

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccCccc
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      +|.|..|++.|...+.|..|+++|+++++|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            356666666666666666666666665554

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=1.2e-05  Score=49.77  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             hhccCCCccccCcCcccCCCHHHHHHH-HHHhCC
Q psy2838         341 LSVHSGVRLTCRTCGLFCDSKRALTAH-VREAHP  373 (458)
Q Consensus       341 ~~~h~~~~~~C~~C~~~f~~~~~L~~H-~~~~h~  373 (458)
                      +.|.++++|.|..|++.|..+..|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            456677889999999999999999999 777764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.71  E-value=1.6e-05  Score=45.54  Aligned_cols=23  Identities=35%  Similarity=0.846  Sum_probs=11.1

Q ss_pred             ccccCccccccCCCHHHHHHHHh
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      ++|.|..|++.|.+...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            34445555555555555555543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.71  E-value=1.5e-05  Score=45.23  Aligned_cols=21  Identities=14%  Similarity=0.379  Sum_probs=8.8

Q ss_pred             cccCccccccCCCHHHHHHHH
Q psy2838         320 KYKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~  340 (458)
                      +|.|..|++.|.+...|..|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHL   23 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHH
Confidence            344444444444444444443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.71  E-value=1.2e-05  Score=45.75  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=11.7

Q ss_pred             ccccCccccccCCCHHHHHHHHh
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      +||.|..|++.|.+...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            34555555555555555555543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.71  E-value=2.8e-06  Score=56.05  Aligned_cols=34  Identities=15%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             HHhhhccCccccCc--cccccCCCHHHHHHHHhhcc
Q psy2838         311 HMTTVHQAQKYKCA--DCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       311 H~~~h~~~~~~~C~--~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |+..|+++++|.|.  .|++.|.+...|.+|++.|.
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            34445555666663  46666666666666655443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.70  E-value=2.1e-05  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.545  Sum_probs=10.3

Q ss_pred             eecCccCcccCChhHHHHHHhhhc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVH  316 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~  316 (458)
                      |.|..|++.|.....|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGG
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhc
Confidence            344444444444444444444443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.69  E-value=2e-05  Score=45.70  Aligned_cols=19  Identities=37%  Similarity=0.878  Sum_probs=7.5

Q ss_pred             ccCccccccCCCHHHHHHH
Q psy2838         321 YKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H  339 (458)
                      |.|..|++.|.....|..|
T Consensus         4 ~~C~~C~~~f~~~~~l~~H   22 (30)
T 2m0d_A            4 YQCDYCGRSFSDPTSKMRH   22 (30)
T ss_dssp             EECTTTCCEESCHHHHHHH
T ss_pred             ccCCCCCcccCCHHHHHHH
Confidence            3333333333333333333

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.69  E-value=1.9e-05  Score=45.74  Aligned_cols=24  Identities=21%  Similarity=0.591  Sum_probs=10.0

Q ss_pred             cccCcCcccCCCHHHHHHHHHHhC
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      |.|..|++.|.....|..|++.|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHc
Confidence            334444444444444444444443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.69  E-value=2.6e-05  Score=44.83  Aligned_cols=21  Identities=33%  Similarity=0.746  Sum_probs=8.7

Q ss_pred             ccCccccccCCCHHHHHHHHh
Q psy2838         321 YKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      |.|..|++.|.+...|..|++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            344444444444444444433

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=2.6e-05  Score=45.18  Aligned_cols=27  Identities=26%  Similarity=0.684  Sum_probs=16.5

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccC
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhccC
Confidence            456666666666666666666666543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.66  E-value=3.3e-05  Score=44.69  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=26.0

Q ss_pred             ccccCccccccCCCHHHHHHHHhhccCCC
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTLSVHSGV  347 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~~  347 (458)
                      ++|.|..|++.|.....|..|++.|+++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47999999999999999999998887654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.66  E-value=4.4e-05  Score=43.85  Aligned_cols=27  Identities=19%  Similarity=0.370  Sum_probs=25.1

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      +|.|..|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            688999999999999999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.65  E-value=2.1e-05  Score=45.30  Aligned_cols=25  Identities=28%  Similarity=0.655  Sum_probs=14.5

Q ss_pred             cccCccccccCCCHHHHHHHHhhcc
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      +|.|..|++.|.+...|..|++.|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhc
Confidence            4556666666666666666655443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.64  E-value=2.1e-05  Score=48.59  Aligned_cols=27  Identities=22%  Similarity=0.530  Sum_probs=11.9

Q ss_pred             ccCccccCcc--ccccCCCHHHHHHHHhh
Q psy2838         316 HQAQKYKCAD--CGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       316 ~~~~~~~C~~--C~~~f~~~~~L~~H~~~  342 (458)
                      +++++|.|.+  |++.|.+.+.|.+|++.
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            3344444442  44444444444444433

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=3.1e-05  Score=44.45  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=10.0

Q ss_pred             eecCccCcccCChhHHHHHHhhhc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVH  316 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~  316 (458)
                      |.|..|++.|.....|..|+++|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHhc
Confidence            344444444444444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.60  E-value=3.6e-05  Score=43.47  Aligned_cols=20  Identities=40%  Similarity=0.871  Sum_probs=8.2

Q ss_pred             ccCccccccCCCHHHHHHHH
Q psy2838         321 YKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~  340 (458)
                      |.|..|++.|.+...|..|+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~   21 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQ   21 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHG
T ss_pred             ccCCCCCCcCCCHHHHHHHH
Confidence            33444444444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.60  E-value=3.5e-05  Score=43.48  Aligned_cols=25  Identities=24%  Similarity=0.626  Sum_probs=18.0

Q ss_pred             eecCccCcccCChhHHHHHHhhhcc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      |.|..|++.|.....|..|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            6677777777777777777777654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=3.4e-05  Score=44.27  Aligned_cols=24  Identities=38%  Similarity=0.653  Sum_probs=9.8

Q ss_pred             eecCccCcccCChhHHHHHHhhhc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVH  316 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~  316 (458)
                      |.|..|++.|.....|..|+++|+
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHHhc
Confidence            334444444444444444444433

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.59  E-value=3.6e-05  Score=43.59  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=23.8

Q ss_pred             CccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         347 VRLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       347 ~~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      ++|.|..|++.|.....|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            57899999999999999999999874

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.58  E-value=5.3e-05  Score=53.70  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             CCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         345 SGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       345 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      .+++|.|..|++.|..+..|.+|++.|+++
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            345566666666666666666666666654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=2.8e-05  Score=44.61  Aligned_cols=24  Identities=29%  Similarity=0.546  Sum_probs=11.7

Q ss_pred             cccCccccccCCCHHHHHHHHhhc
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      +|.|..|++.|.+...|..|++.|
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h   25 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIH   25 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHh
Confidence            344555555555555555554443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.56  E-value=2.9e-05  Score=44.11  Aligned_cols=24  Identities=13%  Similarity=0.385  Sum_probs=14.9

Q ss_pred             CcccccccccccCCHHHHHHHHHh
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVNS  202 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~~  202 (458)
                      ++|.|..|++.|...+.|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            456666666666666666666653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.55  E-value=3.2e-05  Score=50.74  Aligned_cols=31  Identities=32%  Similarity=0.566  Sum_probs=17.6

Q ss_pred             chhccCcceecC--cccccccCHHHHHHHHHHh
Q psy2838         257 KSVHEGIKYKCE--ECTKTFAQKQNLLSHVQAI  287 (458)
Q Consensus       257 ~~~~~~~~~~C~--~C~~~f~~~~~L~~H~~~~  287 (458)
                      ..|.++++|.|.  .|++.|.....|..|++.|
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            335555666663  4666666666666665443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=4.3e-05  Score=43.85  Aligned_cols=24  Identities=33%  Similarity=0.629  Sum_probs=10.0

Q ss_pred             cccccCccccCChHHHHHHHHHhc
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAH  232 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~  232 (458)
                      |.|.+|++.|.....|..|+++|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHHHHhc
Confidence            334444444444444444444433

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.54  E-value=3.7e-05  Score=43.89  Aligned_cols=24  Identities=33%  Similarity=0.858  Sum_probs=14.2

Q ss_pred             CcccccccccccCCHHHHHHHHHh
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVNS  202 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~~  202 (458)
                      ++|.|..|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            455666666666666666666553

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.54  E-value=5e-05  Score=44.57  Aligned_cols=23  Identities=26%  Similarity=0.743  Sum_probs=10.6

Q ss_pred             cccCc--cccccCCCHHHHHHHHhh
Q psy2838         320 KYKCA--DCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       320 ~~~C~--~C~~~f~~~~~L~~H~~~  342 (458)
                      ||.|.  .|++.|.+...|..|++.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~   26 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT   26 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH
Confidence            34444  444444444444444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.54  E-value=0.0001  Score=52.24  Aligned_cols=40  Identities=25%  Similarity=0.432  Sum_probs=27.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHHhhcCCCccccccCc
Q psy2838         175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCD  215 (458)
Q Consensus       175 ~~~~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~  215 (458)
                      +..+++|+|.+|++.|.....|..|++.|+++ ...|.++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~-~~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT-SLQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT-SCCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC-cccccccc
Confidence            45567888888888888888888888765443 34444443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.53  E-value=5.8e-05  Score=44.27  Aligned_cols=25  Identities=24%  Similarity=0.567  Sum_probs=12.7

Q ss_pred             eecC--ccCcccCChhHHHHHHhhhcc
Q psy2838         293 YTCE--VCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       293 ~~C~--~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      |.|.  .|++.|.....|..|+++|++
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            4454  455555555555555555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.67  E-value=1.3e-05  Score=46.35  Aligned_cols=19  Identities=37%  Similarity=0.859  Sum_probs=7.5

Q ss_pred             ccCccccccCCCHHHHHHH
Q psy2838         321 YKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H  339 (458)
                      |.|..|++.|.+...|..|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H   21 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAH   21 (29)
Confidence            3333333333333333333

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.66  E-value=1.3e-05  Score=45.03  Aligned_cols=22  Identities=36%  Similarity=0.791  Sum_probs=10.2

Q ss_pred             cccCccccccCCCHHHHHHHHh
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      ||.|..|++.|.+...|..|++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            3444444444444444444433

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.66  E-value=1.3e-05  Score=46.25  Aligned_cols=27  Identities=22%  Similarity=0.607  Sum_probs=16.9

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccC
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      +|.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            356666666666666666666666543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.51  E-value=5.8e-05  Score=44.63  Aligned_cols=17  Identities=29%  Similarity=0.669  Sum_probs=7.1

Q ss_pred             cccccCCCHHHHHHHHh
Q psy2838         325 DCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       325 ~C~~~f~~~~~L~~H~~  341 (458)
                      .|++.|.+...|..|++
T Consensus        10 ~C~k~f~~~~~L~~H~~   26 (32)
T 1zfd_A           10 GCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             TCCCCBSSSHHHHHHHG
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            34444444444444433

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.65  E-value=1.4e-05  Score=46.48  Aligned_cols=22  Identities=36%  Similarity=0.732  Sum_probs=9.3

Q ss_pred             cccCccccccCCCHHHHHHHHh
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      +|.|..|++.|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            3444444444444444444433

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.50  E-value=6.8e-05  Score=44.30  Aligned_cols=28  Identities=21%  Similarity=0.606  Sum_probs=18.6

Q ss_pred             ceeecC--ccCcccCChhHHHHHHhhhccC
Q psy2838         291 IKYTCE--VCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       291 ~~~~C~--~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      ++|.|.  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            346676  6777777777777777776654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.49  E-value=7.3e-05  Score=46.04  Aligned_cols=29  Identities=24%  Similarity=0.411  Sum_probs=16.9

Q ss_pred             CCCCcccccc--cccccCCHHHHHHHHHhhc
Q psy2838         176 PPVKKFPCDQ--CGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       176 ~~~k~~~C~~--C~~~f~~~~~L~~H~~~~h  204 (458)
                      .+.++|.|.+  |++.|...+.|..|++.|.
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            3455666653  6666666666666665443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.54  E-value=2.1e-05  Score=45.67  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=9.0

Q ss_pred             eecCccccccCCchhhhhccch
Q psy2838         237 FKCDHCVKSFNQKPNLISHIKS  258 (458)
Q Consensus       237 ~~C~~C~~~f~~~~~L~~H~~~  258 (458)
                      |.|..|++.|.....|..|+++
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            4 YVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            3444444444444444444433

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.37  E-value=8.5e-05  Score=42.99  Aligned_cols=20  Identities=35%  Similarity=0.773  Sum_probs=9.7

Q ss_pred             cccCccccccCCCHHHHHHH
Q psy2838         320 KYKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H  339 (458)
                      +|.|..|++.|.+...|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            34444444444444444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.47  E-value=2.8e-05  Score=43.62  Aligned_cols=21  Identities=38%  Similarity=0.871  Sum_probs=8.4

Q ss_pred             eecCccccccCCchhhhhccc
Q psy2838         237 FKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       237 ~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      |.|..|++.|.....|..|++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            334444444444444444433

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.35  E-value=8.8e-05  Score=42.93  Aligned_cols=27  Identities=19%  Similarity=0.573  Sum_probs=17.3

Q ss_pred             eeecCccCcccCChhHHHHH-HhhhccC
Q psy2838         292 KYTCEVCSKSYNQVTNLLSH-MTTVHQA  318 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H-~~~h~~~  318 (458)
                      +|.|..|++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            36666666666666666666 5566554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00041  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.743  Sum_probs=11.9

Q ss_pred             cccC--cCcccCCCHHHHHHHHHHhC
Q psy2838         349 LTCR--TCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       349 ~~C~--~C~~~f~~~~~L~~H~~~~h  372 (458)
                      |.|.  .|++.+.....|..|++..|
T Consensus        39 ~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           39 LACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             EECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CEeeCCCCcCCCCChHHHHhhccccC
Confidence            4453  45555555555555555443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.00059  Score=47.98  Aligned_cols=52  Identities=21%  Similarity=0.420  Sum_probs=44.0

Q ss_pred             eecCc--cCcccCChhHHHHHHh-hhccCc------cccCc--cccccCCCHHHHHHHHhhcc
Q psy2838         293 YTCEV--CSKSYNQVTNLLSHMT-TVHQAQ------KYKCA--DCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       293 ~~C~~--C~~~f~~~~~L~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~L~~H~~~~h  344 (458)
                      +.|..  |++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            45654  9999999999999984 676654      79996  89999999999999998765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.11  E-value=0.0002  Score=40.84  Aligned_cols=15  Identities=40%  Similarity=0.926  Sum_probs=5.9

Q ss_pred             cccccCCCHHHHHHH
Q psy2838         325 DCGRLFAQEHTLRTH  339 (458)
Q Consensus       325 ~C~~~f~~~~~L~~H  339 (458)
                      .|++.|.+...|..|
T Consensus         9 ~C~k~f~~~~~l~~H   23 (29)
T 2ab3_A            9 NCGRSFNDRRKLNRH   23 (29)
T ss_dssp             TTCEEESSHHHHHHH
T ss_pred             cCcCccCCHHHHHHH
Confidence            333333333333333

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.07  E-value=0.00029  Score=40.18  Aligned_cols=24  Identities=29%  Similarity=0.629  Sum_probs=13.7

Q ss_pred             eecC--ccCcccCChhHHHHHHhhhc
Q psy2838         293 YTCE--VCSKSYNQVTNLLSHMTTVH  316 (458)
Q Consensus       293 ~~C~--~C~~~f~~~~~L~~H~~~h~  316 (458)
                      |.|.  .|++.|...+.|..|+++|+
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            5555  55555555555555555553

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.45  E-value=0.0062  Score=51.97  Aligned_cols=50  Identities=16%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhc
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      +..|+.|+..+ .+..|..|+...-..+...|+.|+..+.. ..|..|...+
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~  159 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNC  159 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTC
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhC
Confidence            34555555544 33445555544444455555555554432 3445554433

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.33  E-value=0.001  Score=53.86  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=17.8

Q ss_pred             CCCccccCcCcccCCCHHHHHHHHH
Q psy2838         345 SGVRLTCRTCGLFCDSKRALTAHVR  369 (458)
Q Consensus       345 ~~~~~~C~~C~~~f~~~~~L~~H~~  369 (458)
                      ....|+|.+|++.|.+...|..|+.
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            3445678888888877777777764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.29  E-value=0.01  Score=50.67  Aligned_cols=82  Identities=20%  Similarity=0.370  Sum_probs=52.4

Q ss_pred             ceeec--CccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhhccCCCccccCcCcccCCCHHHHHHHH
Q psy2838         291 IKYTC--EVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHV  368 (458)
Q Consensus       291 ~~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~  368 (458)
                      .+..|  .-|+..+. ...|..|.. .-.-.+..|+.|+..+ .+..|..|+...-..+...|+.|+..+. ...|..|.
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~  156 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHD  156 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHH
T ss_pred             cccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHH
Confidence            34555  34655443 445666653 2334567888888877 5667888876666666667889988774 45678888


Q ss_pred             HHhCCCCC
Q psy2838         369 REAHPGCE  376 (458)
Q Consensus       369 ~~~h~~~~  376 (458)
                      ..+.++.+
T Consensus       157 ~~~~~~~~  164 (170)
T 3hcs_A          157 QNCPLALE  164 (170)
T ss_dssp             TTCCC---
T ss_pred             HhCcChhh
Confidence            77766544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.83  E-value=0.0039  Score=50.42  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=19.1

Q ss_pred             hccCcceecCcccccccCHHHHHHHH
Q psy2838         259 VHEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       259 ~~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      ......|.|..|++.|.+...|..|+
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~  113 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHY  113 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHH
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHH
Confidence            34456677888888888888887776

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.94  E-value=0.008  Score=47.75  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=21.5

Q ss_pred             HhhhccCccccCccccccCCCHHHHHHHHh
Q psy2838         312 MTTVHQAQKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       312 ~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      ...|+|+++|.|..|++.|.+...|..|++
T Consensus        42 ded~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             CSSSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             cccCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            345667777777777777777777777754

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.44  E-value=0.028  Score=35.71  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=8.6

Q ss_pred             ccCccccccCCCHHHHHHHH
Q psy2838         321 YKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~  340 (458)
                      |.|+.|+..|.....|+.||
T Consensus        13 ~~CPrCn~~f~~~~sLr~Hm   32 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHM   32 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHH
T ss_pred             eeCCcccccccchHHHHhhh
Confidence            44444444444444444443

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.69  E-value=0.016  Score=46.00  Aligned_cols=30  Identities=27%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHHHh
Q psy2838         173 GKGPPVKKFPCDQCGKSFTLKQNLTYHVNS  202 (458)
Q Consensus       173 ~~~~~~k~~~C~~C~~~f~~~~~L~~H~~~  202 (458)
                      ..+++.++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            345678899999999999999999999763

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.07  E-value=0.12  Score=32.80  Aligned_cols=29  Identities=28%  Similarity=0.433  Sum_probs=25.2

Q ss_pred             CCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         346 GVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       346 ~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      +.+|.|+.|+..|.....|+.||+..-++
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CCceeCCcccccccchHHHHhhhhhcCcc
Confidence            35788999999999999999999966554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.65  E-value=0.063  Score=31.89  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=15.7

Q ss_pred             ccCccccccCCCHHHHHHHHhhccC
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      |.|++|.+.|.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            6666666666666666666655554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.03  E-value=0.11  Score=30.82  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      .|.|++|.+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            488999999999999999999999964

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=90.28  E-value=0.25  Score=28.25  Aligned_cols=25  Identities=32%  Similarity=0.607  Sum_probs=20.9

Q ss_pred             cccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      -.|.+|.+.++...+|.+|+|..|.
T Consensus        10 qhcrfckkkysdvknlikhire~hd   34 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHD   34 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3489999999999999999988774

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.91  E-value=1.1  Score=26.59  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             CCcccccccccccCCHHHHHHHHH
Q psy2838         178 VKKFPCDQCGKSFTLKQNLTYHVN  201 (458)
Q Consensus       178 ~k~~~C~~C~~~f~~~~~L~~H~~  201 (458)
                      ...+.|..|+..|.....+..|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            456788999999988888888876

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=85.24  E-value=0.52  Score=33.71  Aligned_cols=47  Identities=26%  Similarity=0.519  Sum_probs=24.7

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccc
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      |.|..|+..+. +..|..|...-.+-..|.|-.|++.|.. ..++.|..
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Hts   57 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVK   57 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCCC
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEee
Confidence            55555555543 3455556544444345666666666653 44555543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=81.70  E-value=0.35  Score=34.56  Aligned_cols=39  Identities=21%  Similarity=0.444  Sum_probs=17.7

Q ss_pred             ceecCcccccccCHHHHHHHHHHhhcCceeecCccCcccC
Q psy2838         264 KYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYN  303 (458)
Q Consensus       264 ~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~f~  303 (458)
                      .|.|..|+.++. +..|..|.........|.|-.|++.|.
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeC
Confidence            355555554443 334555543333223455555555554

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=80.21  E-value=2.5  Score=24.20  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=15.0

Q ss_pred             ccccccccccCCHHHHHHHHHhhc
Q psy2838         181 FPCDQCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       181 ~~C~~C~~~f~~~~~L~~H~~~~h  204 (458)
                      -.|..|.+.|....+|..|++..|
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346666666666666666666444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-09
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-09
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	9e-09
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	4e-08
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	6e-08
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-06
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	3e-05
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.003
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	5e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.002
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	6e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	7e-04
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	0.001
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.002
d1wira_	121	g.37.1.5 (A:) Protein arginine N-methyltransferase	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHM 228
           K +PC QCGKSFT K     H++         C  C K F  K +L+ HM
Sbjct: 2   KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIK 257
            C  C K+F HK     HM+       + C  C K F  K +L+ H+K
Sbjct: 5   PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 9e-09
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIH 288
           + C  C KSF  K     H+        Y C  C K F  K +L+ H   IH
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 4e-08
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTT 314
           Y C+ C K+F  K     H+        Y C VC K +    +L+ HM  
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTH 339
           Y C+ C KS+   +    HM+     + Y C  CG+ F  +H L  H
Sbjct: 4   YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVR 369
           Y C  CG+ F  +     H           C  CG     K  L  H++
Sbjct: 4   YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (111), Expect = 6e-08
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEV 297
           Y C+ C K F++  +L  H++ +H   + + C+V
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
           + C  C K F++  +L  HIK VH   + +KC+
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCD 212
           K + C  CGK F+   +L  H+  +H   R  KC 
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCD 240
            C  C K F+   +L  H+   H   R  KC 
Sbjct: 7   ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
           Y C+ C K +++  +L  H+  VH +++ +KC
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVR 348
           Y C  CG+ F++   L  H   VH+  R
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSER 33

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIH 288
            H G K Y+C  C   F Q   +  H+   H
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIH 204
           K + C  C   FT    +  H+   H
Sbjct: 7   KPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 232 HNGVR-FKCDHCVKSFNQKPNLISHIKSVH 260
           H+G + ++C  C   F Q   +  HI   H
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTTVH 316
            H G K Y C +C   + Q   +  H+   H
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)

Query: 203 IHLGVR-IKCDFCDKTFAHKPNLIAHMNSAH 232
            H G +  +C  C   F     +  H+   H
Sbjct: 2   THSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSG 346
           Y+C  C   F Q  T++ H L  H+ 
Sbjct: 9   YECYICHARFTQSGTMKMHILQKHTE 34

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
           +H G K Y C EC K F++   L+ H Q +H G
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQH-QRVHTG 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIKY 293
            H G K Y C  C KTF QKQ L  H    +    +
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNF 36

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 232 HNGVR-FKCDHCVKSFNQKPNLISHIKSVHE 261
           H G + + C HC K+F QK  L  H K  H+
Sbjct: 3   HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 203 IHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHN 233
            H G +   C  CDKTF  K  L  H    H+
Sbjct: 2   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           + CE CT+ FA++++L  H    H   K
Sbjct: 3   FVCEVCTRAFARQEHLKRH-YRSHTNEK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
           + F C+ C ++F  +++L  H    H  
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHY-RSHTN 27

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (81), Expect = 6e-04
 Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
           ++C  C + F++  +L +H    H G
Sbjct: 4   FQCRICMRNFSRSDHLTTH-IRTHTG 28

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGI 291
              GIK ++C +C ++F++  +L  H +  HM +
Sbjct: 5   GSTGIKPFQCPDCDRSFSRSDHLALH-RKRHMLV 37

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIH 288
           YKC EC K F+Q   L++H Q IH
Sbjct: 3   YKCLECGKAFSQNSGLINH-QRIH 25

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
           + C EC K F +  +L  H    H   K
Sbjct: 3   FACPECPKRFMRSDHLSKH-IKTHQNKK 29

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 265 YKCEE--CTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
           + C E  C K+F  K++L  H   +H   + Y CE
Sbjct: 2   FSCPEPACGKSFNFKKHLKEH-MKLHSDTRDYICE 35

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 121

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 3/41 (7%)

Query: 207 VRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFN 247
               C FCD+ FA      +H    H    F  D  V    
Sbjct: 14  QHTPCLFCDRLFASAEETFSHCKLEHQ---FNIDSMVHKHG 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.45
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.42
d1v65a_	64	hypotheical protein 2610044O15Rik {Mouse (Mus musc	99.32
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.89
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.86
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.84
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.84
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.78
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.68
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.68
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.67
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.66
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.63
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.62
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.6
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.59
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.56
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.56
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.55
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.53
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.5
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.38
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.36
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.33
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.27
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.26
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.23
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.2
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.18
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.15
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.02
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.01
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.98
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.95
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.9
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.88
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.8
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.79
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.72
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.56
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.53
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.48
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.47
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.37
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.35
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.3
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.3
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.2
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.19
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.18
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.12
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.1
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.04
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.99
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.92
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.91
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.91
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.88
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.87
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.8
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.79
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.79
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.7
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.6
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.55
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.53
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.52
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.5
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.39
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.22
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.17
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.15
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.97
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.77
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.73
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.58
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.27
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.18
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.13
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.13
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.02
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.57
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.5
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.45
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.41
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.36
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.2
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.11
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.78
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.58
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.89
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.24
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	91.48
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.92
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.09
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.78
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.18
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	88.86
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	88.83
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.79
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.73
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	88.7
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.35
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.28
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.4
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.86
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.62
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.09
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.46
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.77
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	81.63
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.7

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-14  Score=96.62  Aligned_cols=51  Identities=29%  Similarity=0.592  Sum_probs=32.5

Q ss_pred             ceeecCccCcccCChhHHHHHHhhhccCccccCccccccCCCHHHHHHHHhh
Q psy2838         291 IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       291 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      ++|.|. ||+.|.....|..|+++|++++||.|..|++.|.+.+.|..|+++
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            456663 666666666666666666666666666666666666666666544

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.5e-14  Score=95.24  Aligned_cols=51  Identities=31%  Similarity=0.550  Sum_probs=26.7

Q ss_pred             CccccccCccccCChHHHHHHHHHhcCCceeecCccccccCCchhhhhccch
Q psy2838         207 VRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKS  258 (458)
Q Consensus       207 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  258 (458)
                      ++|.| .||+.|.....|..|+++|.+++||.|.+|++.|.+...|..|+++
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            34555 2555555555555555555555555555555555555555555543

>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: KRAB domain (Kruppel-associated box)
superfamily: KRAB domain (Kruppel-associated box)
family: KRAB domain (Kruppel-associated box)
domain: hypotheical protein 2610044O15Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.9e-14  Score=97.55  Aligned_cols=38  Identities=13%  Similarity=0.037  Sum_probs=34.5

Q ss_pred             CcccccceeeecchhHHHHHHHhcCCCcCCCCCCCCCC
Q psy2838          37 GQVKSEYNYYQLSSDEKFEILKSISASFTPGYGGFLPN   74 (458)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~   74 (458)
                      .+..++|||+||||+||+|||++|+++||.|||+||..
T Consensus         2 ~~~~~~VtFeDVaV~Fs~EEW~~Ld~~Qk~LyrdVm~E   39 (64)
T d1v65a_           2 SSGSSGVTYDDVHMNFTEEEWDLLDSSQKRLYEEVMLE   39 (64)
T ss_dssp             CSSCSCCCCCCCTTCCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEeEEEEEcCHHHHhCcCHHHHHHHHHhHHH
Confidence            45678999999999999999999999999999999533

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3e-10  Score=69.43  Aligned_cols=35  Identities=26%  Similarity=0.636  Sum_probs=23.4

Q ss_pred             CceeecCccCcccCChhHHHHHHh-hhccCccccCc
Q psy2838         290 GIKYTCEVCSKSYNQVTNLLSHMT-TVHQAQKYKCA  324 (458)
Q Consensus       290 ~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~  324 (458)
                      +++|+|.+|++.|...+.|..|++ +|++++||+|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            455667777777777777777754 56677777665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.7e-10  Score=70.71  Aligned_cols=36  Identities=22%  Similarity=0.542  Sum_probs=27.3

Q ss_pred             HHHhhhccCccccCccccccCCCHHHHHHHHhhccC
Q psy2838         310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       310 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      +|+++|++++||.|..||++|.+.++|.+|+++|.+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            467777888888888888888888888888766654

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.8e-10  Score=67.94  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=26.8

Q ss_pred             hhhccCccccCccccccCCCHHHHHHHHhhccCC
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG  346 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  346 (458)
                      ++|++++||+|+.|++.|.++++|++|++++|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4678888888888888888888888887777764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.3e-10  Score=67.68  Aligned_cols=35  Identities=26%  Similarity=0.522  Sum_probs=18.4

Q ss_pred             CCccccccCccccCChHHHHHHHH-HhcCCceeecC
Q psy2838         206 GVRIKCDFCDKTFAHKPNLIAHMN-SAHNGVRFKCD  240 (458)
Q Consensus       206 ~~~~~C~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~  240 (458)
                      +++|+|.+|++.|...++|.+|++ +|.+++||+|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            344555555555555555555543 35555555554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=4e-10  Score=68.48  Aligned_cols=33  Identities=21%  Similarity=0.471  Sum_probs=27.3

Q ss_pred             HHhhhccCccccCccccccCCCHHHHHHHHhhc
Q psy2838         311 HMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       311 H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      |.++|++++||+|..|+++|.++++|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            667888888888888888888888888887655

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.2e-10  Score=67.11  Aligned_cols=33  Identities=27%  Similarity=0.541  Sum_probs=24.9

Q ss_pred             hhhccCccccCccccccCCCHHHHHHHHhhccC
Q psy2838         313 TTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       313 ~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      ++|++++||+|..|+++|.+.+.|..|+++|+.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            467777888888888888888888888776654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-09  Score=63.86  Aligned_cols=32  Identities=22%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             hhccCccccCccccccCCCHHHHHHHHhhccC
Q psy2838         314 TVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       314 ~h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      +|++++||+|..|+++|.+.++|.+|++.|.+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            35666666666666666666666666555543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.2e-09  Score=65.58  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             HHHhhccCCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         338 THTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       338 ~H~~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      +|++.|.++++|.|..||++|...++|.+|++.|.++
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5788889999999999999999999999999999874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.6e-09  Score=62.54  Aligned_cols=26  Identities=23%  Similarity=0.548  Sum_probs=9.9

Q ss_pred             CCceeecCccccccCCchhhhhccch
Q psy2838         233 NGVRFKCDHCVKSFNQKPNLISHIKS  258 (458)
Q Consensus       233 ~~~~~~C~~C~~~f~~~~~L~~H~~~  258 (458)
                      +++||+|..|+++|...+.|..|+++
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhccc
Confidence            33333333333333333333333333

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=4.9e-09  Score=62.19  Aligned_cols=30  Identities=13%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             hccCccccCccccccCCCHHHHHHHHhhcc
Q psy2838         315 VHQAQKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       315 h~~~~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |++++||+|.+|++.|.++++|.+|++.|.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            466777777777777777777777765543

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.6e-09  Score=64.27  Aligned_cols=25  Identities=44%  Similarity=0.651  Sum_probs=9.8

Q ss_pred             ccCcceecCcccccccCHHHHHHHH
Q psy2838         260 HEGIKYKCEECTKTFAQKQNLLSHV  284 (458)
Q Consensus       260 ~~~~~~~C~~C~~~f~~~~~L~~H~  284 (458)
                      ++++||+|.+|++.|...+.|..|+
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~   28 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHF   28 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhC
Confidence            3333333333333333333333333

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.7e-09  Score=61.88  Aligned_cols=32  Identities=31%  Similarity=0.715  Sum_probs=26.8

Q ss_pred             eecCc--cCcccCChhHHHHHHhhhccCccccCc
Q psy2838         293 YTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCA  324 (458)
Q Consensus       293 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~  324 (458)
                      |.|+.  |++.|.+...|++|+++|++++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67776  888888888888888888888888886

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.62  E-value=9e-09  Score=58.38  Aligned_cols=27  Identities=22%  Similarity=0.662  Sum_probs=13.6

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccC
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      +|.|++|++.|...+.|.+|+++|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            344555555555555555555555444

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.1e-08  Score=62.04  Aligned_cols=31  Identities=16%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             ccchhccCcceecCcccccccCHHHHHHHHH
Q psy2838         255 HIKSVHEGIKYKCEECTKTFAQKQNLLSHVQ  285 (458)
Q Consensus       255 H~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~  285 (458)
                      |.++|++++||+|..|++.|.++++|..|++
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHh
Confidence            4455555555555555555555555555543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.5e-08  Score=60.81  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=18.8

Q ss_pred             hhccCcceecCcccccccCHHHHHHHHHHhhc
Q psy2838         258 SVHEGIKYKCEECTKTFAQKQNLLSHVQAIHM  289 (458)
Q Consensus       258 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~h~  289 (458)
                      +|++++||+|++|++.|..+.+|..|++.+|.
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            45556666666666666666666666555544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=7.7e-09  Score=57.90  Aligned_cols=21  Identities=33%  Similarity=0.705  Sum_probs=8.4

Q ss_pred             cccCccccccCCCHHHHHHHH
Q psy2838         320 KYKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~  340 (458)
                      ||+|..|++.|.++++|.+|+
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~   23 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHI   23 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccC
Confidence            334444444444444444443

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.6e-08  Score=57.25  Aligned_cols=27  Identities=26%  Similarity=0.619  Sum_probs=14.3

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccC
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      +|.|.+|++.|...+.|.+|+++|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            355555555555555555555555544

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.1e-08  Score=60.71  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=9.8

Q ss_pred             CCceeecCccccccCCchhhhhccc
Q psy2838         233 NGVRFKCDHCVKSFNQKPNLISHIK  257 (458)
Q Consensus       233 ~~~~~~C~~C~~~f~~~~~L~~H~~  257 (458)
                      +++||+|.+|++.|.++.+|.+|++
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccccCCCCCCcccChHHHHHHcc
Confidence            3333333333333333333333333

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.55  E-value=2e-08  Score=56.88  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=13.0

Q ss_pred             ccccccCccccCChHHHHHHHHHhcCC
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMNSAHNG  234 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  234 (458)
                      +|.|.+|++.|...+.|.+|+++|+++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            344444444444444444444444443

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.6e-08  Score=56.53  Aligned_cols=27  Identities=19%  Similarity=0.624  Sum_probs=16.0

Q ss_pred             ceeecCccCcccCChhHHHHHHhhhcc
Q psy2838         291 IKYTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       291 ~~~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      ++|+|.+|++.|...+.|..|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            456666666666666666666666553

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.8e-08  Score=60.22  Aligned_cols=32  Identities=28%  Similarity=0.632  Sum_probs=22.4

Q ss_pred             ccccc--CccccCChHHHHHHHHHhcCCceeecC
Q psy2838         209 IKCDF--CDKTFAHKPNLIAHMNSAHNGVRFKCD  240 (458)
Q Consensus       209 ~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~  240 (458)
                      |.|++  |++.|.....|++|+++|++++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45655  777777777777777777777777775

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3e-08  Score=56.03  Aligned_cols=27  Identities=26%  Similarity=0.583  Sum_probs=13.6

Q ss_pred             ccccccCccccCChHHHHHHHHHhcCC
Q psy2838         208 RIKCDFCDKTFAHKPNLIAHMNSAHNG  234 (458)
Q Consensus       208 ~~~C~~C~~~f~~~~~L~~H~~~h~~~  234 (458)
                      +|.|.+|++.|...+.|.+|+++|+++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            345555555555555555555555443

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.8e-08  Score=52.30  Aligned_cols=22  Identities=32%  Similarity=0.776  Sum_probs=8.4

Q ss_pred             eecCccCcccCChhHHHHHHhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTT  314 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~  314 (458)
                      |+|..||+.|...+.|.+|+++
T Consensus         3 y~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           3 YKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH
T ss_pred             ccCCCCcCeeccCcccccCccC
Confidence            3333333333333333333333

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.2e-08  Score=65.28  Aligned_cols=31  Identities=16%  Similarity=0.422  Sum_probs=15.4

Q ss_pred             hccCccccCcc--ccccCCCHHHHHHHHhhccC
Q psy2838         315 VHQAQKYKCAD--CGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       315 h~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h~  345 (458)
                      |++++||+|.+  |++.|.+.++|..|+++|.+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccC
Confidence            45555555543  55555555555555444433

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.9e-08  Score=51.88  Aligned_cols=22  Identities=32%  Similarity=0.767  Sum_probs=10.0

Q ss_pred             cccccccccccCCHHHHHHHHH
Q psy2838         180 KFPCDQCGKSFTLKQNLTYHVN  201 (458)
Q Consensus       180 ~~~C~~C~~~f~~~~~L~~H~~  201 (458)
                      ||+|.+||+.|...+.|..|++
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            4444444444444444444444

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=1.4e-07  Score=60.06  Aligned_cols=37  Identities=30%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             hhhhccchhccCcceecCc--ccccccCHHHHHHHHHHhh
Q psy2838         251 NLISHIKSVHEGIKYKCEE--CTKTFAQKQNLLSHVQAIH  288 (458)
Q Consensus       251 ~L~~H~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~h  288 (458)
                      .|..|+. |.+++||.|.+  |++.|...++|..|++.|.
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            4445553 55555555544  5555555555555554443

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.7e-07  Score=52.39  Aligned_cols=20  Identities=35%  Similarity=0.710  Sum_probs=8.5

Q ss_pred             cCcccCChhHHHHHHhhhcc
Q psy2838         298 CSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h~~  317 (458)
                      |+++|.+.+.|+.|+++|++
T Consensus        10 Cgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3          10 CRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSSHHHHHHHHHHTTT
T ss_pred             CCceECChhHhhhhcCcCcC
Confidence            44444444444444444433

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.7e-07  Score=52.44  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=9.0

Q ss_pred             cCcccCChhHHHHHHhhhcc
Q psy2838         298 CSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h~~  317 (458)
                      |+++|.+.+.|+.|+++|++
T Consensus        10 Cgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3          10 CGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCCEESCHHHHHHHHHHHHC
T ss_pred             CCceECcHHHcCccccccCC
Confidence            44444444444444444443

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.2e-07  Score=51.14  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=12.9

Q ss_pred             ccccCc--CcccCCCHHHHHHHHHHhCC
Q psy2838         348 RLTCRT--CGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       348 ~~~C~~--C~~~f~~~~~L~~H~~~~h~  373 (458)
                      +|.|.+  |+++|.+++.|.+|+|.|.+
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            344544  55555555555555555443

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.8e-07  Score=51.86  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=9.4

Q ss_pred             cCcccCChhHHHHHHhhhccC
Q psy2838         298 CSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      |++.|...++|..|+++|+++
T Consensus        10 C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_          10 CGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCcCChhHhhhhcCccccc
Confidence            444444444444444444443

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.7e-07  Score=51.43  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=8.1

Q ss_pred             CccccCChHHHHHHHHHhc
Q psy2838         214 CDKTFAHKPNLIAHMNSAH  232 (458)
Q Consensus       214 C~~~f~~~~~L~~H~~~h~  232 (458)
                      |++.|...+.|.+|+++|+
T Consensus        10 Cgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3          10 CGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCCEESCHHHHHHHHHHHH
T ss_pred             CCceECcHHHcCccccccC
Confidence            4444444444444444443

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-06  Score=49.60  Aligned_cols=27  Identities=22%  Similarity=0.629  Sum_probs=15.4

Q ss_pred             ccccCc--cccccCCCHHHHHHHHhhccC
Q psy2838         319 QKYKCA--DCGRLFAQEHTLRTHTLSVHS  345 (458)
Q Consensus       319 ~~~~C~--~C~~~f~~~~~L~~H~~~~h~  345 (458)
                      +||.|+  .|+++|.+.++|.+|+++|.+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            356663  366666666666666555443

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.5e-06  Score=50.03  Aligned_cols=25  Identities=32%  Similarity=0.728  Sum_probs=12.6

Q ss_pred             ccccCcc--ccccCCCHHHHHHHHhhc
Q psy2838         319 QKYKCAD--CGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       319 ~~~~C~~--C~~~f~~~~~L~~H~~~~  343 (458)
                      +||.|..  |++.|.+.++|++|+++|
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhc
Confidence            4555544  555555555555554443

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.3e-06  Score=43.89  Aligned_cols=21  Identities=38%  Similarity=0.871  Sum_probs=9.5

Q ss_pred             cCccccccCCCHHHHHHHHhh
Q psy2838         322 KCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       322 ~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      +|+.|++.|+++..|+.|++.
T Consensus         3 kc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGG
T ss_pred             ccchhhhHhcchhHHHHHhhc
Confidence            444444444444444444433

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.7e-06  Score=48.47  Aligned_cols=18  Identities=17%  Similarity=0.593  Sum_probs=7.1

Q ss_pred             cCcccCChhHHHHHHhhh
Q psy2838         298 CSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h  315 (458)
                      |++.|.+.+.|.+|+++|
T Consensus        10 C~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1          10 CDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCCEESSHHHHHHHTHHH
T ss_pred             CCcEECchhHhhhhcCcc
Confidence            333333333333333333

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.5e-06  Score=48.77  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=14.0

Q ss_pred             ccccCcc--ccccCCCHHHHHHHHhhc
Q psy2838         319 QKYKCAD--CGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       319 ~~~~C~~--C~~~f~~~~~L~~H~~~~  343 (458)
                      |||+|+.  |+++|.+.++|.+|+++|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~H   27 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIH   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCcc
Confidence            3555644  666666666666665444

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.6e-06  Score=43.74  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=23.5

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      +.+|..|++.|+++..|..|+|.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            35799999999999999999999864

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=4.1e-06  Score=48.13  Aligned_cols=27  Identities=22%  Similarity=0.650  Sum_probs=17.5

Q ss_pred             ceeecCc--cCcccCChhHHHHHHhhhcc
Q psy2838         291 IKYTCEV--CSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       291 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~  317 (458)
                      ++|.|.+  |++.|.+.+.|++|+++|+.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            4566666  66666666666666666654

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.4e-06  Score=46.66  Aligned_cols=18  Identities=50%  Similarity=0.746  Sum_probs=7.4

Q ss_pred             cCcccCChhHHHHHHhhh
Q psy2838         298 CSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h  315 (458)
                      |+++|.+.++|++|+++|
T Consensus        10 C~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4          10 CNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSSTTTTHHHHHHH
T ss_pred             cCCcCCCHHHHHHHHhhc
Confidence            444444444444444433

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.8e-06  Score=47.03  Aligned_cols=16  Identities=56%  Similarity=0.791  Sum_probs=6.8

Q ss_pred             cccccCCchhhhhccc
Q psy2838         242 CVKSFNQKPNLISHIK  257 (458)
Q Consensus       242 C~~~f~~~~~L~~H~~  257 (458)
                      |+++|.+..+|.+|++
T Consensus        10 C~K~F~~~~~L~~H~r   25 (28)
T d1ubdc4          10 CNKKFAQSTNLKSHIL   25 (28)
T ss_dssp             CCCCCSSTTTTHHHHH
T ss_pred             cCCcCCCHHHHHHHHh
Confidence            4444444444444444

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=8.5e-06  Score=43.30  Aligned_cols=26  Identities=31%  Similarity=0.616  Sum_probs=16.7

Q ss_pred             CccccCccccccCCCHHHHHHHHhhc
Q psy2838         318 AQKYKCADCGRLFAQEHTLRTHTLSV  343 (458)
Q Consensus       318 ~~~~~C~~C~~~f~~~~~L~~H~~~~  343 (458)
                      ++||.|.+||+.|.+....++|.+.|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35666777777777776666665443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.1e-05  Score=43.49  Aligned_cols=25  Identities=32%  Similarity=0.639  Sum_probs=11.3

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      +|.|++|+..|..+..+..|+|.|-
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CcccchHHHHhhccccceEeeeccc
Confidence            3444444444444444444444443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.1e-05  Score=44.48  Aligned_cols=30  Identities=27%  Similarity=0.585  Sum_probs=25.9

Q ss_pred             eeecCccCcccCChhHHHHHHhhhccCccc
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKY  321 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  321 (458)
                      ...|..||+.|.....|.+|..+|.+++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            367888999999988999999999998887

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.9e-05  Score=41.76  Aligned_cols=28  Identities=36%  Similarity=0.695  Sum_probs=20.2

Q ss_pred             CCcccccccccccCCHHHHHHHHHhhcC
Q psy2838         178 VKKFPCDQCGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       178 ~k~~~C~~C~~~f~~~~~L~~H~~~~h~  205 (458)
                      +|||.|++|+..|..+..+..|+++|.+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3677777777777777777777776554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.1e-05  Score=42.43  Aligned_cols=25  Identities=32%  Similarity=0.727  Sum_probs=13.1

Q ss_pred             cccCcc--ccccCCCHHHHHHHHhhcc
Q psy2838         320 KYKCAD--CGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       320 ~~~C~~--C~~~f~~~~~L~~H~~~~h  344 (458)
                      ||.|..  |+++|...++|++|++.+|
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhC
Confidence            455543  5555555555555555444

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2e-05  Score=43.47  Aligned_cols=29  Identities=24%  Similarity=0.470  Sum_probs=16.0

Q ss_pred             cccccCccccCChHHHHHHHHHhcCCcee
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRF  237 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  237 (458)
                      ..|..||+.|.....|.+|...|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555555555555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=3.9e-05  Score=40.71  Aligned_cols=25  Identities=12%  Similarity=0.529  Sum_probs=15.5

Q ss_pred             ceeecCccCcccCChhHHHHHHhhh
Q psy2838         291 IKYTCEVCSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       291 ~~~~C~~C~~~f~~~~~L~~H~~~h  315 (458)
                      ++|.|.+||+.|......++|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4566666666666666666666655

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.5e-05  Score=41.06  Aligned_cols=27  Identities=22%  Similarity=0.448  Sum_probs=15.6

Q ss_pred             CccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         347 VRLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       347 ~~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      ++|+|..|.+.-.+.+.|..|+|.|++
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            355566666665566666666655543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.3e-05  Score=40.82  Aligned_cols=27  Identities=33%  Similarity=0.641  Sum_probs=19.3

Q ss_pred             Ccccccc--cccccCCHHHHHHHHHhhcC
Q psy2838         179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       179 k~~~C~~--C~~~f~~~~~L~~H~~~~h~  205 (458)
                      |||.|.+  |++.|...++|+.|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4677766  77777777777777776653

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.7e-05  Score=39.66  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=14.6

Q ss_pred             ccccCccccccCCCHHHHHHHHhhcc
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      +||+|..|.+.-.+.+.|..|++.|.
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CcceeeecccccCCchheEEeeeccc
Confidence            45555555555555555555555444

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00011  Score=38.79  Aligned_cols=27  Identities=22%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      +|.|+.|+..+...+-|.+|+|.|+++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCC
Confidence            366777888777777788888877654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=9.5e-05  Score=39.09  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=14.4

Q ss_pred             eecCccCcccCChhHHHHHHhhhccC
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      |.|+.|+......+-|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45555555555555555555555543

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00011  Score=38.37  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=14.6

Q ss_pred             eecCccCcccCChhHHHHHHhhhcc
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      ..|..||+.|...+.|++|+.+|++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            3455666666666666666665554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00015  Score=37.30  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=15.7

Q ss_pred             ecCccCcccCChhHHHHHHhhhccC
Q psy2838         294 TCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       294 ~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      +|+.|.+.|.++..|+.|-+.|+++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4666666666666666666666655

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.18  E-value=9.1e-05  Score=40.23  Aligned_cols=27  Identities=37%  Similarity=0.778  Sum_probs=18.3

Q ss_pred             cccCccccccCCCHHHHHHHHhhccCC
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLSVHSG  346 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~~h~~  346 (458)
                      ||.|.+|++.|.++.-|.+|..+.|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            466777777777777777776666654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00013  Score=38.74  Aligned_cols=24  Identities=21%  Similarity=0.591  Sum_probs=10.5

Q ss_pred             cccCcCcccCCCHHHHHHHHHHhC
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      |.|.+|.+.....++|..|+++.|
T Consensus         3 y~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           3 YQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             ccccccccccccchhhhhhhhccc
Confidence            344444444444444444444444

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00024  Score=36.45  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=18.7

Q ss_pred             ccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         350 TCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       350 ~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      +|+.|.+.|.++..|..|-|.|.++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4777777777777777777777765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00013  Score=38.13  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=12.0

Q ss_pred             ccccCccccCChHHHHHHHHHhcC
Q psy2838         210 KCDFCDKTFAHKPNLIAHMNSAHN  233 (458)
Q Consensus       210 ~C~~C~~~f~~~~~L~~H~~~h~~  233 (458)
                      .|..||+.|...+.|++|+..|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            345555555555555555554443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=38.21  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=15.6

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      +|+|.+|.......++|.+|+++.|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            45566666666666666666665554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0002  Score=37.85  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=13.7

Q ss_pred             cccCcCcccCCCHHHHHHHHHHh
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      |.|..|+..|.++.+|.+||+..
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSS
T ss_pred             cccceeeeeEeeccchhHhhhhh
Confidence            45666666666666666666543

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00021  Score=37.82  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             ccccCccccccCCCHHHHHHHHhhccCC
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTLSVHSG  346 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~~~h~~  346 (458)
                      +||+|..|.....+.++|..|+++.|+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4677888877777778888887776653

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00026  Score=37.35  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=14.5

Q ss_pred             cccCccccccCCCHHHHHHHHhh
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      ||.|..|+..|.++.+|.+||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            46666666666666666666553

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.91  E-value=0.00032  Score=35.42  Aligned_cols=23  Identities=26%  Similarity=0.661  Sum_probs=12.8

Q ss_pred             eecCccCcccCChhHHHHHHhhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h  315 (458)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45555555555555555555554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00023  Score=41.55  Aligned_cols=25  Identities=20%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             ccCccccCccccccCCCHHHHHHHH
Q psy2838         316 HQAQKYKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       316 ~~~~~~~C~~C~~~f~~~~~L~~H~  340 (458)
                      ++.|||.|.+|++.|.++.++.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            3567888888888888888888884

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0004  Score=36.83  Aligned_cols=26  Identities=31%  Similarity=0.635  Sum_probs=14.5

Q ss_pred             ceecCcccccccCHHHHHHHHHHhhc
Q psy2838         264 KYKCEECTKTFAQKQNLLSHVQAIHM  289 (458)
Q Consensus       264 ~~~C~~C~~~f~~~~~L~~H~~~~h~  289 (458)
                      ||.|..|.+.....++|+.|++..|+
T Consensus         2 py~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             Cccccccccccccchhhhhhhhcccc
Confidence            45555555555555555555555444

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00036  Score=36.24  Aligned_cols=25  Identities=24%  Similarity=0.511  Sum_probs=16.6

Q ss_pred             CccccCcCcccCCCHHHHHHHHHHh
Q psy2838         347 VRLTCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       347 ~~~~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      ++|+|..|.+.....++|.+|+|.|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            3566677777666666777776665

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00047  Score=36.27  Aligned_cols=26  Identities=27%  Similarity=0.648  Sum_probs=16.9

Q ss_pred             eecCccCcccCChhHHHHHHhhhccC
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h~~~  318 (458)
                      |.|..|...|...-.|+.||..|+++
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccCC
Confidence            66666666666666666666666653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.79  E-value=0.0003  Score=35.49  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=15.9

Q ss_pred             cccCcCcccCCCHHHHHHHHHHh
Q psy2838         349 LTCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       349 ~~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      |+|..|.+.|..++.|.+|.|.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            46777777777777777776655

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00058  Score=35.46  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=10.8

Q ss_pred             CcccccccccccCCHHHHHHHHH
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVN  201 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~  201 (458)
                      |||+|..|...-...++|..|++
T Consensus         2 kp~kck~cdyaaadsssl~kh~r   24 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLR   24 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhh
Confidence            34444444444444444444444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.60  E-value=0.00072  Score=39.27  Aligned_cols=23  Identities=35%  Similarity=0.733  Sum_probs=10.4

Q ss_pred             cccccCccccCChHHHHHHHHHh
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSA  231 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h  231 (458)
                      |.|.+|++.|.+..+|--||+.|
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTT
T ss_pred             cCCCCCCCccCCcccccchHhhh
Confidence            44444444444444444444444

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.001  Score=34.95  Aligned_cols=25  Identities=32%  Similarity=0.634  Sum_probs=13.1

Q ss_pred             cccccCccccCChHHHHHHHHHhcC
Q psy2838         209 IKCDFCDKTFAHKPNLIAHMNSAHN  233 (458)
Q Consensus       209 ~~C~~C~~~f~~~~~L~~H~~~h~~  233 (458)
                      |.|..|...|...-.|+.||..|++
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4555555555555555555555544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.00062  Score=34.31  Aligned_cols=23  Identities=35%  Similarity=0.889  Sum_probs=14.1

Q ss_pred             cccCccccccCCCHHHHHHHHhh
Q psy2838         320 KYKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      ||+|..|...|.++.+|..||.+
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            46666666666666666666544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.52  E-value=0.00055  Score=37.10  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=24.9

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      +|.|.+|++.|..+..|.+|..+-|++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            588999999999999999999988875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.50  E-value=0.00096  Score=38.74  Aligned_cols=26  Identities=27%  Similarity=0.680  Sum_probs=14.7

Q ss_pred             eeecCccCcccCChhHHHHHHhhhcc
Q psy2838         292 KYTCEVCSKSYNQVTNLLSHMTTVHQ  317 (458)
Q Consensus       292 ~~~C~~C~~~f~~~~~L~~H~~~h~~  317 (458)
                      .|.|.+|++.|.+...|--||+.|..
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             ccCCCCCCCccCCcccccchHhhhcc
Confidence            35555555555555555555555543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.001  Score=38.78  Aligned_cols=25  Identities=28%  Similarity=0.740  Sum_probs=21.5

Q ss_pred             CCCcccccccccccCCHHHHHHHHH
Q psy2838         177 PVKKFPCDQCGKSFTLKQNLTYHVN  201 (458)
Q Consensus       177 ~~k~~~C~~C~~~f~~~~~L~~H~~  201 (458)
                      +.|||.|.+|++.|-...++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            5688999999999999999988865

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.22  E-value=0.0012  Score=34.70  Aligned_cols=21  Identities=29%  Similarity=0.804  Sum_probs=10.9

Q ss_pred             cccCcc--ccccCCCHHHHHHHH
Q psy2838         320 KYKCAD--CGRLFAQEHTLRTHT  340 (458)
Q Consensus       320 ~~~C~~--C~~~f~~~~~L~~H~  340 (458)
                      ||+|+.  |++.|...+.|++|.
T Consensus         3 py~c~hegcdk~fs~ps~lkrhe   25 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHE   25 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhh
Confidence            455533  555555555555553

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.17  E-value=0.0019  Score=33.86  Aligned_cols=24  Identities=25%  Similarity=0.546  Sum_probs=12.5

Q ss_pred             eeecCc--cCcccCChhHHHHHHhhh
Q psy2838         292 KYTCEV--CSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       292 ~~~C~~--C~~~f~~~~~L~~H~~~h  315 (458)
                      +|+|+.  |++.|...+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            345543  555555555555555544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0021  Score=32.37  Aligned_cols=22  Identities=45%  Similarity=0.954  Sum_probs=14.5

Q ss_pred             ceecCcccccccCHHHHHHHHH
Q psy2838         264 KYKCEECTKTFAQKQNLLSHVQ  285 (458)
Q Consensus       264 ~~~C~~C~~~f~~~~~L~~H~~  285 (458)
                      ||+|..|...|..+.+|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666653

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0019  Score=33.49  Aligned_cols=24  Identities=25%  Similarity=0.654  Sum_probs=15.4

Q ss_pred             ccCccccccCCCHHHHHHHHhhcc
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      |+|+.|+-...++++|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            566666666666666666666554

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.0027  Score=32.75  Aligned_cols=21  Identities=24%  Similarity=0.814  Sum_probs=14.0

Q ss_pred             cccCccccccCCCHHHHHHHH
Q psy2838         320 KYKCADCGRLFAQEHTLRTHT  340 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H~  340 (458)
                      ||+|..||+.|.++.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            466677777666666666664

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0036  Score=32.43  Aligned_cols=25  Identities=32%  Similarity=0.679  Sum_probs=20.3

Q ss_pred             cccccccccccCCHHHHHHHHHhhc
Q psy2838         180 KFPCDQCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       180 ~~~C~~C~~~f~~~~~L~~H~~~~h  204 (458)
                      .|.|+.|+.....++.|+.|++..|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4788888888888888888887655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.58  E-value=0.0045  Score=31.23  Aligned_cols=24  Identities=54%  Similarity=0.934  Sum_probs=19.0

Q ss_pred             ccccccccccCCHHHHHHHHHhhc
Q psy2838         181 FPCDQCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       181 ~~C~~C~~~f~~~~~L~~H~~~~h  204 (458)
                      |.|+.|-+.|..+.++..|.+..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888888877655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.27  E-value=0.0049  Score=31.09  Aligned_cols=20  Identities=20%  Similarity=0.521  Sum_probs=8.4

Q ss_pred             cCccccccCCCHHHHHHHHh
Q psy2838         322 KCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       322 ~C~~C~~~f~~~~~L~~H~~  341 (458)
                      .|+.|-+.|.++.++..|++
T Consensus         3 pcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           3 PCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             ECTTTCCEESCHHHHHHHHH
T ss_pred             CCchhhHHhccccCceEEEE
Confidence            34444444444444444433

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.18  E-value=0.0048  Score=32.46  Aligned_cols=25  Identities=40%  Similarity=0.739  Sum_probs=14.3

Q ss_pred             cccccc--cccccCCHHHHHHHHHhhc
Q psy2838         180 KFPCDQ--CGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       180 ~~~C~~--C~~~f~~~~~L~~H~~~~h  204 (458)
                      ||.|..  |.+.|.+...|.+|..+|.
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CcCcccccccccchhhhhhhhhhcccc
Confidence            455543  6666666666666655443

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0043  Score=33.54  Aligned_cols=21  Identities=29%  Similarity=0.790  Sum_probs=11.2

Q ss_pred             eeecCc--cccccCCchhhhhcc
Q psy2838         236 RFKCDH--CVKSFNQKPNLISHI  256 (458)
Q Consensus       236 ~~~C~~--C~~~f~~~~~L~~H~  256 (458)
                      ||.|..  |.+.|++.+.-..|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            455544  555555555555554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.005  Score=35.33  Aligned_cols=27  Identities=26%  Similarity=0.630  Sum_probs=20.3

Q ss_pred             CccccC--ccccccCCCHHHHHHHHhhcc
Q psy2838         318 AQKYKC--ADCGRLFAQEHTLRTHTLSVH  344 (458)
Q Consensus       318 ~~~~~C--~~C~~~f~~~~~L~~H~~~~h  344 (458)
                      ++||.|  +-|+.+|.+...|..|..+|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            678888  568888888888888865543

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0073  Score=31.35  Aligned_cols=22  Identities=41%  Similarity=0.726  Sum_probs=13.3

Q ss_pred             ccCcCcccCCCHHHHHHHHHHh
Q psy2838         350 TCRTCGLFCDSKRALTAHVREA  371 (458)
Q Consensus       350 ~C~~C~~~f~~~~~L~~H~~~~  371 (458)
                      +|+.|.+.++++..|+.|.|.|
T Consensus         4 kc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGG
T ss_pred             cCcccccccCcHHHHHHhhccc
Confidence            4666666666666666665555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0093  Score=32.91  Aligned_cols=22  Identities=27%  Similarity=0.828  Sum_probs=12.3

Q ss_pred             ccCccccccCCCHHHHHHHHhh
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      |.|..|++.|.++..+.+|...
T Consensus         5 fvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhhh
Confidence            5555555555555555555443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.014  Score=33.42  Aligned_cols=27  Identities=33%  Similarity=0.635  Sum_probs=20.9

Q ss_pred             CCccccc--ccccccCCHHHHHHHHHhhc
Q psy2838         178 VKKFPCD--QCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       178 ~k~~~C~--~C~~~f~~~~~L~~H~~~~h  204 (458)
                      .|||.|.  -|+..|.+...|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            5788884  48888888888888877553

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.45  E-value=0.012  Score=30.85  Aligned_cols=18  Identities=28%  Similarity=0.558  Sum_probs=7.0

Q ss_pred             cCcccCChhHHHHHHhhh
Q psy2838         298 CSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h  315 (458)
                      |.+.|.+...|.+|..+|
T Consensus        10 c~kgf~tlhhltrhs~th   27 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTH   27 (30)
T ss_dssp             CCCEESSTTHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccc
Confidence            333333333333333333

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.41  E-value=0.019  Score=29.53  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             ccccCcCcccCCCHHHHHHHHHH
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      +|.|..||+.+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            58899999999999999999754

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.0045  Score=33.46  Aligned_cols=21  Identities=24%  Similarity=0.683  Sum_probs=9.6

Q ss_pred             cccCcc--ccccCCCHHHHHHHH
Q psy2838         320 KYKCAD--CGRLFAQEHTLRTHT  340 (458)
Q Consensus       320 ~~~C~~--C~~~f~~~~~L~~H~  340 (458)
                      ||.|..  |.+.|++.++-.+|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            444433  444444444444443

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.015  Score=32.09  Aligned_cols=26  Identities=15%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhCC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAHP  373 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h~  373 (458)
                      .|.|..|++.|.++..+.+|.....+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            57899999999999999999887654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.018  Score=29.84  Aligned_cols=21  Identities=29%  Similarity=0.604  Sum_probs=11.1

Q ss_pred             cCccccccCCCHHHHHHHHhh
Q psy2838         322 KCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       322 ~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      +|+.|.++.+++..|+.|.+.
T Consensus         4 kc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGG
T ss_pred             cCcccccccCcHHHHHHhhcc
Confidence            455555555555555555443

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.023  Score=34.17  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             ccccCcCcccCCCHHHHHHHHHHhC
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVREAH  372 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~~h  372 (458)
                      -|.|..|+|.|.....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4779999999999999999998874

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.022  Score=34.29  Aligned_cols=23  Identities=22%  Similarity=0.561  Sum_probs=13.4

Q ss_pred             eecCccCcccCChhHHHHHHhhh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~~h  315 (458)
                      |.|..|+|.|.....|++|...|
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHHhc
Confidence            55566666666666666655544

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.89  E-value=0.043  Score=29.89  Aligned_cols=20  Identities=35%  Similarity=0.859  Sum_probs=12.6

Q ss_pred             cccCccccccCCCHHHHHHH
Q psy2838         320 KYKCADCGRLFAQEHTLRTH  339 (458)
Q Consensus       320 ~~~C~~C~~~f~~~~~L~~H  339 (458)
                      .|.|.-||..|++.+.|..|
T Consensus         8 rf~c~pcgirfss~stleah   27 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAH   27 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHH
T ss_pred             ceeccccceeecChhHHHhh
Confidence            35666666666666666666

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.063  Score=28.09  Aligned_cols=22  Identities=18%  Similarity=0.696  Sum_probs=9.6

Q ss_pred             ccCccccccCCCHHHHHHHHhh
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      |.|..|++...+...++.|+..
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            3444444444444444444433

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.1  Score=27.26  Aligned_cols=24  Identities=38%  Similarity=0.856  Sum_probs=12.0

Q ss_pred             ccccccccccCCHHHHHHHHHhhc
Q psy2838         181 FPCDQCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       181 ~~C~~C~~~f~~~~~L~~H~~~~h  204 (458)
                      |.|..|++...+...++.|+...|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             eechhHHHHHhhccCceEEEeecc
Confidence            445555555555555555544333

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.92  E-value=0.059  Score=29.32  Aligned_cols=23  Identities=30%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             CcccccccccccCCHHHHHHHHH
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVN  201 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~  201 (458)
                      ..|.|.-||..|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            46899999999999999999965

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.09  E-value=0.11  Score=26.47  Aligned_cols=18  Identities=22%  Similarity=0.482  Sum_probs=9.3

Q ss_pred             cCcccCChhHHHHHHhhh
Q psy2838         298 CSKSYNQVTNLLSHMTTV  315 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~h  315 (458)
                      |++.|.....|+.|+.+|
T Consensus         9 c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHHHH
T ss_pred             chHHHhhccceEEEeecc
Confidence            555555555555555444

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.13  Score=26.58  Aligned_cols=17  Identities=24%  Similarity=0.624  Sum_probs=7.7

Q ss_pred             cCcccCChhHHHHHHhh
Q psy2838         298 CSKSYNQVTNLLSHMTT  314 (458)
Q Consensus       298 C~~~f~~~~~L~~H~~~  314 (458)
                      |++.|...+.+++|+.+
T Consensus         9 C~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             CCCEESSHHHHHHHHGG
T ss_pred             HHHHhhchHHHHHHhhc
Confidence            44444444444444443

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.18  E-value=0.15  Score=27.09  Aligned_cols=17  Identities=24%  Similarity=0.620  Sum_probs=7.2

Q ss_pred             ccccCCCHHHHHHHHhh
Q psy2838         326 CGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       326 C~~~f~~~~~L~~H~~~  342 (458)
                      |+..|.....|..|+-+
T Consensus        11 C~A~ynk~wkL~AHLck   27 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSK   27 (31)
T ss_dssp             GCCEESSHHHHHHHHHH
T ss_pred             cchhhccchhhhHHhhh
Confidence            44444444444444333

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.86  E-value=0.12  Score=28.47  Aligned_cols=22  Identities=23%  Similarity=0.736  Sum_probs=10.1

Q ss_pred             ccCccccccCCCHHHHHHHHhh
Q psy2838         321 YKCADCGRLFAQEHTLRTHTLS  342 (458)
Q Consensus       321 ~~C~~C~~~f~~~~~L~~H~~~  342 (458)
                      |.|.+|.+.+...+++-+|...
T Consensus         9 yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           9 YRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHH
T ss_pred             EEeehhhHHHHHHHHHHHHHHh
Confidence            4444444444444444444433

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.83  E-value=0.15  Score=30.40  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=10.5

Q ss_pred             ccccCccccccCCCHHHHHHHHh
Q psy2838         319 QKYKCADCGRLFAQEHTLRTHTL  341 (458)
Q Consensus       319 ~~~~C~~C~~~f~~~~~L~~H~~  341 (458)
                      .|-.|++|+....+..+|++|+.
T Consensus        23 qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHH
Confidence            34444444444444444444443

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.13  Score=26.59  Aligned_cols=18  Identities=22%  Similarity=0.602  Sum_probs=11.5

Q ss_pred             CccccCChHHHHHHHHHh
Q psy2838         214 CDKTFAHKPNLIAHMNSA  231 (458)
Q Consensus       214 C~~~f~~~~~L~~H~~~h  231 (458)
                      |++.|...+.++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            666666666666666554

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.13  Score=28.66  Aligned_cols=20  Identities=15%  Similarity=0.210  Sum_probs=13.5

Q ss_pred             CcccCChhHHHHHHhhhccC
Q psy2838         299 SKSYNQVTNLLSHMTTVHQA  318 (458)
Q Consensus       299 ~~~f~~~~~L~~H~~~h~~~  318 (458)
                      ++.|.....|..|++.|+++
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34577777777777777664

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.054  Score=36.11  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=17.1

Q ss_pred             ccccCcCcccCCCHHHHHHHHHH
Q psy2838         348 RLTCRTCGLFCDSKRALTAHVRE  370 (458)
Q Consensus       348 ~~~C~~C~~~f~~~~~L~~H~~~  370 (458)
                      .|+|..|++.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            46777788888777777777754

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.13  Score=28.70  Aligned_cols=20  Identities=20%  Similarity=0.283  Sum_probs=12.7

Q ss_pred             ccccCChHHHHHHHHHhcCC
Q psy2838         215 DKTFAHKPNLIAHMNSAHNG  234 (458)
Q Consensus       215 ~~~f~~~~~L~~H~~~h~~~  234 (458)
                      ++.|.....|..||+.|+++
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34566667777777766653

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.28  E-value=0.16  Score=26.97  Aligned_cols=16  Identities=25%  Similarity=0.661  Sum_probs=7.2

Q ss_pred             cccccCCHHHHHHHHH
Q psy2838         186 CGKSFTLKQNLTYHVN  201 (458)
Q Consensus       186 C~~~f~~~~~L~~H~~  201 (458)
                      |+..|.....|..|+-
T Consensus        11 C~A~ynk~wkL~AHLc   26 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLS   26 (31)
T ss_dssp             GCCEESSHHHHHHHHH
T ss_pred             cchhhccchhhhHHhh
Confidence            4444444444444443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.40  E-value=0.21  Score=27.47  Aligned_cols=27  Identities=22%  Similarity=0.527  Sum_probs=19.2

Q ss_pred             CcccccccccccCCHHHHHHHHHhhcC
Q psy2838         179 KKFPCDQCGKSFTLKQNLTYHVNSIHL  205 (458)
Q Consensus       179 k~~~C~~C~~~f~~~~~L~~H~~~~h~  205 (458)
                      ..|.|.+|.+++...+++-+|..+-|.
T Consensus         7 ~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           7 HTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            457777888777777777777665443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.86  E-value=0.31  Score=28.96  Aligned_cols=30  Identities=27%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             CCCccccCcCcccCCCHHHHHHHHHHhCCC
Q psy2838         345 SGVRLTCRTCGLFCDSKRALTAHVREAHPG  374 (458)
Q Consensus       345 ~~~~~~C~~C~~~f~~~~~L~~H~~~~h~~  374 (458)
                      .+.+..|++|+.......+|++|+..-|-.
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~   50 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            345677999999999999999999988754

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.62  E-value=0.26  Score=25.07  Aligned_cols=16  Identities=38%  Similarity=0.704  Sum_probs=7.3

Q ss_pred             cccccCCHHHHHHHHH
Q psy2838         186 CGKSFTLKQNLTYHVN  201 (458)
Q Consensus       186 C~~~f~~~~~L~~H~~  201 (458)
                      |++.|.....|+.|+-
T Consensus         9 c~kafkkhnqlkvhqf   24 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQF   24 (28)
T ss_dssp             CCCEESSHHHHHHHHH
T ss_pred             chHHHhhccceEEEee
Confidence            4444444444444443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.09  E-value=0.52  Score=24.48  Aligned_cols=25  Identities=44%  Similarity=0.865  Sum_probs=15.9

Q ss_pred             ccccc--ccccccCCHHHHHHHHHhhc
Q psy2838         180 KFPCD--QCGKSFTLKQNLTYHVNSIH  204 (458)
Q Consensus       180 ~~~C~--~C~~~f~~~~~L~~H~~~~h  204 (458)
                      .|+|.  -|+..|.++.+++.|....|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            35564  37777777777777766544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.46  E-value=0.34  Score=31.50  Aligned_cols=37  Identities=22%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             CCcccccccccccCCHHHHHHHHHhhcCCCccccccCccc
Q psy2838         178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKT  217 (458)
Q Consensus       178 ~k~~~C~~C~~~f~~~~~L~~H~~~~h~~~~~~C~~C~~~  217 (458)
                      ...|+|+.|++.|.....+..   .-.....|.|..|+..
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             CCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            456777777777765544432   1223345777777643

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.77  E-value=0.23  Score=32.89  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=11.2

Q ss_pred             eecCccCcccCChhHHHHHHh
Q psy2838         293 YTCEVCSKSYNQVTNLLSHMT  313 (458)
Q Consensus       293 ~~C~~C~~~f~~~~~L~~H~~  313 (458)
                      |.|..|++.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            455555555555555555544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=0.27  Score=31.98  Aligned_cols=13  Identities=38%  Similarity=1.065  Sum_probs=5.8

Q ss_pred             ceecCcccccccC
Q psy2838         264 KYKCEECTKTFAQ  276 (458)
Q Consensus       264 ~~~C~~C~~~f~~  276 (458)
                      .|+|+.|++.|..
T Consensus        14 ~y~Cp~C~~~ys~   26 (62)
T d1vd4a_          14 SFKCPVCSSTFTD   26 (62)
T ss_dssp             EEECSSSCCEEEH
T ss_pred             ceECCCCCCCcch
Confidence            3444444444443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.70  E-value=0.89  Score=23.56  Aligned_cols=24  Identities=29%  Similarity=0.780  Sum_probs=13.7

Q ss_pred             eecC--cccccccCHHHHHHHHHHhh
Q psy2838         265 YKCE--ECTKTFAQKQNLLSHVQAIH  288 (458)
Q Consensus       265 ~~C~--~C~~~f~~~~~L~~H~~~~h  288 (458)
                      |+|.  .|...|.++.+++.|..+.|
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhc
Confidence            4453  36666666666666654443