Psyllid ID: psy2875

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---
Protein Sequence
MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDIDTTPVPESSDILAINYEDKVKDEP
Secondary Structure (PSIPRED)
cccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHcccccccccccccccccccHHcccccHHccccc
Secondary Structure Prediction (SSPRO)
cccHccccEcccccHHEHEHccccccccccccccccEccccHHHHHHHHHcccccccccccccccEccccHHHHHEHHcccccccEcccccccEcccccHHHHHHcccccccccccccccEcccccHHHHEHEccccccEccccccEEcccccHHEEEEEEcccccccEcccccccEccccHHHHHHHHcccccccccccccEccccHHHHHHHHHcccccccccccccccEccccHHHEHEEcccccccccccccEEEcccccEEcccccccccccccccEccccHHHHHHHHcccccccccccccccEcccccccEcccccHHHHEHHccccccccccccccccEcccccHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHcccccccccccccEEcccccHHEHEEEccccccccccccccccEcccccHHEHEcccccccccccccccEcccccHHHHHEEEccccccccccHccHHHHHHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccHHcHHHHHcHcccHEcccccccEccccccccccccHHHHEcHcccccc
Coil and Loop (DISEMBL)
MSYARRQVEyeqeqqipaqgksIQERkfkcemcpksfdhksnIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLkmhkgpkiftcaqcdkafslksnLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKShqnrrfkcpcceriftsetrmrnhidmkhadenLFKCKKCLKVFSDEIKFhlhgrahakfyrcsecekrFATEDIMRQHFRnyhnkedayVCNYCYDSFETKSTLVDHffhhgnpymcnhcflmfpdeknlrnhectscftcpfcqrkYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLychkvfkkstsfdkhmehhnrnvlhkchlctkaypseknldrhllthnvrrsfrckscgrrfeseELLIVHQVIherkfhkctqceesfkNKKHLKQHLLAHEKvkvfhcpkcpklfrheshlqnhvivhdesevhkCLYCFKVFVHkahldkhlilhetsemhncdfchltfttdndlirhmrsheeyhtkhtcdicgekFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYhhsqnniesesnqssgfmyndetssyshikqeddscdtymddttensntylkqetpdnedidttpvpessdilainyedkvkdep
Flexible Loop (DISEMBL)
msyarrqveyeqeqqipaqgksiqerKFKCEMCPKSFDHKSNIRRHMaathdlqkkyKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHvkshqnrrfkcpcceRIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLhgrahakfyrcSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIEsciqlnptttvLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNtylkqetpdnedidttpvpessdilainyedkvkdep
Low Complexity Region (SEG)
MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHsqnniesesnqssGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDIDTTPVPESSDILAINYEDKVKDEP
Disordered region (IsUnstruct)
******************************************IRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYH************************************************************************************
Disordered Region (DISOPRED)
MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDIDTTPVPES****************
Disordered Region (DISEMBL)
**********************IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEE*********FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDIDTTPVPESSDILAINYEDKVKDEP
Disordered Region (DISPRO)
MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDIDTTPVPESSDI*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQNNIESESNQSSGFMYNDETSSYSHIKQEDDSCDTYMDDTTENSNTYLKQETPDNEDIDTTPVPESSDILAINYEDKVKDEP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	693	2.2.26 [Sep-21-2011]
P10076	861	Zinc finger protein 26 OS	no	N/A	0.782	0.629	0.292	3e-62
A6NN14	1173	Zinc finger protein 729 O	yes	N/A	0.845	0.499	0.305	2e-61
Q05481	1191	Zinc finger protein 91 OS	yes	N/A	0.783	0.455	0.309	2e-59
Q96IR2	970	Zinc finger protein 845 O	no	N/A	0.780	0.557	0.302	2e-59
Q5R8X1	613	Zinc finger protein 665 O	no	N/A	0.714	0.807	0.303	2e-58
Q9H7R5	613	Zinc finger protein 665 O	no	N/A	0.725	0.820	0.298	6e-58
A6QLU5	752	Zinc finger protein 184 O	no	N/A	0.712	0.656	0.314	7e-58
O43345	1167	Zinc finger protein 208 O	no	N/A	0.784	0.466	0.305	2e-57
Q8IYB9	648	Zinc finger protein 595 O	no	N/A	0.711	0.760	0.311	2e-57
Q6ZNA1	936	Zinc finger protein 836 O	no	N/A	0.784	0.581	0.292	2e-57

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score =  240 bits (612), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 251/568 (44%), Gaps = 26/568 (4%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ + C+ C K+F  +S++  H+   H  +K Y+CK C + +     L  H++ H G K 
Sbjct: 271 EKPYDCKECGKAFTERSSLIVHLRQ-HTREKSYECKECGKTFIQPSRLTEHMRSHTGEKP 329

Query: 85  FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           + C QC  AF+  S L+ H+R H  E   +C IC + F     L  H+++H   + ++C 
Sbjct: 330 YQCDQCGNAFASSSYLTTHLRTHTGEKPFECNICGKAFTRSSYLLGHIRTHTGEKPYECK 389

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C + F+  + +  H+  KH  E  + C +C K F+   +   H + H   K +RC  C 
Sbjct: 390 VCGKAFSGRSWLTIHL-RKHTGERPYPCTECEKAFTSFAQLTEHIKTHTGEKPFRCKVCA 448

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMF 258
           + F     ++ HFR  H     Y CNYC  +F  +S L  H   H    PY C  C   F
Sbjct: 449 RTFRNSSCLKTHFR-IHTGIKPYKCNYCGKAFTARSGLTKHVLIHNGEKPYECKECGKAF 507

Query: 259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                L    R H     F C  C +       L  H+ +     P         +C  C
Sbjct: 508 STSSGLVEHIRIHTGEKPFECYQCGKALAHSSSLVGHLRTHTGEKPF--------ECNQC 559

Query: 315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
            + F     L  H  +HT EK  Y+C  C K F + +   KH+  H     ++C  C K 
Sbjct: 560 DKTFTRSSYLRIHMRTHTGEKP-YECKECGKTFPERSCLTKHIRTHTGERPYECKECGKG 618

Query: 375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNK 433
           + S   L  H+ TH+  R F+CK C + F +   L  H  IH   K +KC+ C ++F  +
Sbjct: 619 FISFAQLTVHIKTHSSERPFQCKVCTKSFRNSSSLETHFRIHTGVKPYKCSYCGKAFTAR 678

Query: 434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
             L  HL  H   K + C +C K F   S L  H+  H   +  +C +C K F   ++L+
Sbjct: 679 SGLTIHLRNHTGEKSYACQECGKAFSTSSGLIAHIRSHKGEKPFECDHCGKAFASSSYLN 738

Query: 494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
            HL +H   +   C  C  TFT  + L  HMR+H        C ICG+ F+    L+ H+
Sbjct: 739 VHLKIHTGEKPFQCTVCGKTFTCSSYLPVHMRTHTG-EKPFQCIICGKSFLWSSYLRVHM 797

Query: 554 KI--IHNLFTCIHCGDTLNNAKDYASHL 579
           +I      + C +CG           HL
Sbjct: 798 RIHTGEKPYVCQYCGKAFTEHSGLNKHL 825

May be involved in transcriptional regulation.
Mus musculus (taxid: 10090)

>sp|A6NN14|ZN729_HUMAN Zinc finger protein 729 OS=Homo sapiens GN=ZNF729 PE=2 SV=3

 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 282/631 (44%), Gaps = 45/631 (7%)

Query: 25   ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            E+ +KCE C K+F   S +++H    H  +K YKC+ C + +     L  H  +H G K 
Sbjct: 401  EKPYKCEECGKAFSQFSTLKKH-KIIHTGKKPYKCEECGKAFNSSSTLMKHKIIHTGEKP 459

Query: 85   FTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
            + C +C KAF   S+L++H   H  E   +C+ C + F     L  H   H  ++ +KC 
Sbjct: 460  YKCEECGKAFRQSSHLTRHKAIHTGEKPYKCEECGKAFNHFSDLRRHKIIHTGKKPYKCE 519

Query: 143  CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
             C + F+  + +RNH  + H  E  +KC++C K F    K  +H   H   K  +C EC 
Sbjct: 520  ECGKAFSQSSTLRNH-QIIHTGEKPYKCEECGKAFKWSSKLTVHKVIHTGEKPCKCEECG 578

Query: 201  KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHGN-PYMCNHCFLMF 258
            K F     +R+H +  H +E  Y C  C  +F   S L  H   H G  PY C  C   F
Sbjct: 579  KAFKHFSALRKH-KVIHTREKLYKCEECGKAFNNSSILAKHKIIHTGKKPYKCEECGKAF 637

Query: 259  PDEKNLRNH-------------ECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVL 305
                +L  H             EC   F+     R++KI  H  K    C +     +  
Sbjct: 638  RQSSHLTRHKAIHTGEKPYKCEECGKAFSHFSALRRHKII-HTGKKPYKCEECGKAFSHF 696

Query: 306  KTLQ------------KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSF 353
              L+            KC  C + F+   KLT H++ HT EK   KC  C K FK  ++ 
Sbjct: 697  SALRRHKIIHTGEKPYKCEECGKAFKWSSKLTVHKVIHTAEKPC-KCEECGKSFKHFSAL 755

Query: 354  DKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQ 413
             KH   H R  L+KC  C KA+ S   L +H + H   + ++C+ CG+ F+    L VH+
Sbjct: 756  RKHKVIHTREKLYKCEECVKAFNSFSALMKHKVIHTGEKPYKCEECGKAFKWSSKLTVHK 815

Query: 414  VIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHD 472
            VIH   K  KC +C ++FK+   L++H + H   K + C +C K F   S L  H  +H 
Sbjct: 816  VIHTGEKPCKCEECGKAFKHFSALRKHKIIHTGEKPYKCEECGKAFHQSSKLAKHKKIHT 875

Query: 473  ESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHT 532
              + +KC  C K F   +HL  H I+H   + + C+ C   F    +L  H R H     
Sbjct: 876  GEKPYKCEECGKAFNRLSHLTTHKIIHTGKKPYKCEECGKAFNQSANLTTHKRIHTG-EK 934

Query: 533  KHTCDICGEKFINDLKLKAHIKIIH---NLFTCIHCGDTLNNAKDYASHLLIIHNIESSQ 589
             + C+ CG  F     L AH KIIH     + C  CG   + +    +H  IIH  E   
Sbjct: 935  PYKCEECGRAFSQSSTLTAH-KIIHAGEKPYKCEECGKAFSQSSTLTTH-KIIHTGEKFY 992

Query: 590  QVEKNLNNMYNL--LTTHIEYHHSQNNIESE 618
            + E+       L  LTTH   H  +   + E
Sbjct: 993  KCEECGKAFSQLSHLTTHKRIHSGEKPYKCE 1023

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q05481|ZNF91_HUMAN Zinc finger protein 91 OS=Homo sapiens GN=ZNF91 PE=2 SV=2

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 177/571 (30%), Positives = 252/571 (44%), Gaps = 28/571 (4%)

Query: 25   ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            E+ +K E C K+F     + +H    H  +K YKCK C + ++    L  H  +H G K+
Sbjct: 515  EKPYKFEECGKAFRQSLTLNKHKI-IHSREKPYKCKECGKAFKQFSTLTTHKIIHAGKKL 573

Query: 85   FTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
            + C +C KAF+  S+LS H + H  E   +C+ C + F     L  H + H   + +KC 
Sbjct: 574  YKCEECGKAFNHSSSLSTHKIIHTGEKSYKCEECGKAFLWSSTLRRHKRIHTGEKPYKCE 633

Query: 143  CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
             C + F+  + +  H  + H  E  +KCK+C K FS+      H   H   K Y+C EC+
Sbjct: 634  ECGKAFSHSSALAKHKRI-HTGEKPYKCKECGKAFSNSSTLANHKITHTEEKPYKCKECD 692

Query: 201  KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMF 258
            K F     + +H +  H  E  Y C  C  +F   S L  H F H G  PY C  C   F
Sbjct: 693  KTFKRLSTLTKH-KIIHAGEKLYKCEECGKAFNRSSNLTIHKFIHTGEKPYKCEECGKAF 751

Query: 259  PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                +L    R H     F C  C + +     L +H        P         KC  C
Sbjct: 752  NWSSSLTKHKRIHTREKPFKCKECGKAFIWSSTLTRHKRIHTGEKP--------YKCEEC 803

Query: 315  QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
             + F     LT H+  HT EK  YKC  C K FK S++  KH   H    L+KC  C KA
Sbjct: 804  GKAFSRSSTLTKHKTIHTGEKP-YKCKECGKAFKHSSALAKHKIIHAGEKLYKCEECGKA 862

Query: 375  YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNK 433
            +    NL  H + H   +  + + C + F     L  H+ IH R K +KC +C ++F   
Sbjct: 863  FNQSSNLTTHKIIHTKEKPSKSEECDKAFIWSSTLTEHKRIHTREKTYKCEECGKAFSQP 922

Query: 434  KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
             HL  H   H   K + C +C K F   S L  H I+H   + +KC  C K F   + L 
Sbjct: 923  SHLTTHKRMHTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKPYKCEECGKAFRKSSTLT 982

Query: 494  KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
            +H I+H   + + C+ C   F+  + L RH R H      + C+ CG+ F    KL  H 
Sbjct: 983  EHKIIHTGEKPYKCEECGKAFSQSSTLTRHTRMHTG-EKPYKCEECGKAFNRSSKLTTH- 1040

Query: 554  KIIHN---LFTCIHCGDTLNNAKDYASHLLI 581
            KIIH     + C  CG    ++     H  I
Sbjct: 1041 KIIHTGEKPYKCEECGKAFISSSTLNGHKRI 1071

Homo sapiens (taxid: 9606)

>sp|Q96IR2|ZN845_HUMAN Zinc finger protein 845 OS=Homo sapiens GN=ZNF845 PE=2 SV=3

 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 173/572 (30%), Positives = 262/572 (45%), Gaps = 31/572 (5%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ +KC  C ++F  KS++ RH    H  +K YKC  C + +    +L  H ++H G K 
Sbjct: 380 EKPYKCNECSRTFSRKSSLTRHRRL-HTGEKPYKCNDCGKTFSQMSSLVYHRRLHTGEKP 438

Query: 85  FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           + C +CD+AFS KSNL +H R H  E   +C  C + F     L  H + H   + +KC 
Sbjct: 439 YKCEECDEAFSFKSNLERHRRIHTGEKPYKCNDCGKTFSQTSSLVYHRRLHTGEKPYKCE 498

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C+  F+ ++ +  H  + H  E L+KC +C K FS +     H R H   K Y+C+EC 
Sbjct: 499 ECDEAFSFKSNLERH-RIIHTGEKLYKCNECGKTFSRKSSLTRHCRLHTGEKPYQCNECG 557

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG--NPYMCNHCFLMF 258
           K F  +  +  H +  H     Y CN C+  F   +T+ +H+  H     Y CN C   F
Sbjct: 558 KAFRGQSALIYH-QAIHGIGKLYKCNDCHQVFSNATTIANHWRIHNEERSYKCNRCGKFF 616

Query: 259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                L    R H     + C  C   +  + +L++H        P         +C  C
Sbjct: 617 RHRSYLAVHWRTHSGEKPYKCEECDEAFSFKSNLQRHRRIHTGEKP--------YRCNEC 668

Query: 315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
            + F  +  LT H   HT EK  YKC  C K F ++++   H   H     +KC+ C KA
Sbjct: 669 GKTFSRKSYLTCHRRLHTGEKP-YKCNECGKTFGRNSALIIHKAIHTGEKPYKCNECGKA 727

Query: 375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNK 433
           +  + +L  HL  H   + ++C+ C + F  +  L  H+ IH   K +KC  C+++F   
Sbjct: 728 FSQKSSLTCHLRLHTGEKPYKCEECDKVFSRKSSLEKHRRIHTGEKPYKCKVCDKAFGRD 787

Query: 434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
            HL QH   H   K + C +C K FRH S L  H  +H   + +KC  C K F H + L+
Sbjct: 788 SHLAQHTRIHTGEKPYKCNECGKNFRHNSALVIHKAIHSGEKPYKCNECGKTFRHNSALE 847

Query: 494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
            H  +H   + + C  C   F    +L RH R H      + C+ CG+ F     L  H 
Sbjct: 848 IHKAIHTGEKPYKCSECGKVFNRKANLSRHHRLHTG-EKPYKCNKCGKVFNQQAHLACHH 906

Query: 554 KI--IHNLFTCIHCGDTLNNAKDYASHLLIIH 583
           +I      + C  CG T  +     + +L+IH
Sbjct: 907 RIHTGEKPYKCNECGKTFRH-----NSVLVIH 933

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R8X1|ZN665_PONAB Zinc finger protein 665 OS=Pongo abelii GN=ZNF665 PE=2 SV=1

 Score =  227 bits (579), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 236/520 (45%), Gaps = 25/520 (4%)

Query: 21  KSIQERK--FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKM 78
           KS+  R   +KC+ C K F+  S +  H    H  +K Y+C  C + +  + NL  H  +
Sbjct: 104 KSLSNRGKHYKCDECGKVFNQNSRLTSHKR-IHTGEKPYRCNECGKAFTVRSNLTIHQVI 162

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
           H G K + C +C K FS  SNL+ H R H  E   +C  C + F     L  H   H   
Sbjct: 163 HTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGE 222

Query: 138 R-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFY 194
           + +KC  C + FT  + + +H  + H  E  +KC +C K FS       H   H   K Y
Sbjct: 223 KPYKCNECGKCFTQNSHLASHRRI-HTGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPY 281

Query: 195 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 252
           +C+EC K F     + +H R  H  E  Y CN C  +F   S L  H   H G  P+ CN
Sbjct: 282 KCNECGKVFRHNSYLTKH-RRVHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCN 340

Query: 253 HCFLMFPDEKNLRNHE----CTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTL 308
            C  +F    +L NH         + C  C + + +   L  H        P        
Sbjct: 341 ECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKP-------- 392

Query: 309 QKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKC 368
            KC  C ++F     L +H   H+ EK  YKC  C K F +++   +H   H     +KC
Sbjct: 393 YKCNDCGKVFTQNSHLASHRGIHSGEKP-YKCDECGKAFSQTSQLARHWRVHTGEKPYKC 451

Query: 369 HLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCE 427
           + C KA+    +L  H   H  ++ ++C  CG+ F     L VHQ IH   K +KC +C 
Sbjct: 452 NECGKAFSVHSSLTTHQTIHTGQKPYKCNDCGKVFRHNSYLAVHQRIHTGEKPYKCNECG 511

Query: 428 ESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFV 487
           ++F    +L  H + H   K + C +C K+F   SHL NH  +H   + ++C  C K F 
Sbjct: 512 KAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFS 571

Query: 488 HKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
            ++ L  H+ +H   + + C+ C   FT +++L +H R H
Sbjct: 572 VRSTLTTHMAIHTGDKPYKCNECGKVFTQNSNLAKHRRIH 611

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q9H7R5|ZN665_HUMAN Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2

 Score =  226 bits (575), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 158/530 (29%), Positives = 239/530 (45%), Gaps = 27/530 (5%)

Query: 9   EYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRY 68
           EY Q ++ P      + + +KC+ C K F   S +  H    H  +K Y+C  C + +  
Sbjct: 98  EYNQVEKSPNN----RGKHYKCDECGKVFSQNSRLTSH-KRIHTGEKPYQCNKCGKAFTV 152

Query: 69  KWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVL 127
           + NL  H  +H G K + C +C K FS  SNL+ H R H  E   +C  C + F     L
Sbjct: 153 RSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKL 212

Query: 128 EEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLH 186
             H   H   + +KC  C + FT  + + +H  + H  E  +KC +C K FS       H
Sbjct: 213 TTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRI-HTGEKPYKCNECGKAFSVRSSLTTH 271

Query: 187 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FF 243
              H   K Y+C+EC K F     + +H R  H  E  Y CN C  +F   S L  H   
Sbjct: 272 QTIHTGEKPYKCNECGKVFRHNSYLAKH-RRIHTGEKPYKCNECGKAFSMHSNLTKHQII 330

Query: 244 HHG-NPYMCNHCFLMFPDEKNLRNHE----CTSCFTCPFCQRKYKIEKHLEKHIESCIQL 298
           H G  P+ CN C  +F    +L NH         + C  C + + +   L  H       
Sbjct: 331 HTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGE 390

Query: 299 NPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME 358
            P         KC  C ++F     L +H   H+ EK  YKC  C K F +++   +H  
Sbjct: 391 KP--------YKCNDCGKVFTQNSHLASHRGIHSGEKP-YKCDECGKAFSQTSQLARHWR 441

Query: 359 HHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-E 417
            H     +KC+ C KA+    +L  H   H  ++ ++C  CG+ F     L +HQ IH  
Sbjct: 442 VHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTG 501

Query: 418 RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVH 477
            K +KC +C ++F    +L  H + H   K + C +C K+F   SHL NH  +H   + +
Sbjct: 502 EKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPY 561

Query: 478 KCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
           +C  C K F  ++ L  H+ +H   + + C+ C   FT +++L +H R H
Sbjct: 562 RCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIH 611

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A6QLU5|ZN184_BOVIN Zinc finger protein 184 OS=Bos taurus GN=ZNF184 PE=2 SV=1

 Score =  226 bits (575), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 237/538 (44%), Gaps = 44/538 (8%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ +KC  C K+F    N+  H    H   K YKC  C + +    +L  H ++H G K 
Sbjct: 248 EKPYKCNECEKAFSRSENLINHQR-IHTGDKPYKCDQCGKGFIEGPSLTQHQRIHTGEKP 306

Query: 85  FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           + C +C KAFS +++L +H R H  E    C  C + F       EH K H   + FKC 
Sbjct: 307 YKCDECGKAFSQRTHLVQHQRIHTGEKPYTCNECGKAFSQRGHFMEHQKIHTGEKPFKCD 366

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C++ FT  T +  H  + H  E  +KC +C K F+    F  H   H   K Y C+EC 
Sbjct: 367 ECDKTFTRSTHLTQHQKI-HTGEKTYKCNECGKAFNGPSTFIRHHMIHTGEKPYECNECG 425

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
           K F+    + QH +  H  E  Y C  C  SF   S+L  H   H G  PY CN C   F
Sbjct: 426 KAFSQHSNLTQHQKT-HTGEKPYDCAECGKSFSYWSSLAQHLKIHTGEKPYKCNECGKAF 484

Query: 259 PDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMF 318
               +L  H           +R +  EK  E                     C  C + F
Sbjct: 485 SYCSSLTQH-----------RRIHTREKPFE---------------------CSECGKAF 512

Query: 319 RNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSE 378
                L  H+ +HT EK  Y+C  C K F +S+S  KH   H     ++CH C K +   
Sbjct: 513 SYLSNLNQHQKTHTQEKA-YECKECGKAFIRSSSLAKHERIHTGEKPYQCHECGKTFSYG 571

Query: 379 KNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLK 437
            +L +H   H   R ++C  CGR F     L  H+ IH   K ++C +C ++F++   L 
Sbjct: 572 SSLIQHRKIHTGERPYKCNECGRAFNQNIHLTQHKRIHTGAKPYECAECGKAFRHCSSLA 631

Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 497
           QH   H + K +HC KC K F   SHL  H  +H   + +KC  C K F    HL +H  
Sbjct: 632 QHQKTHTEEKPYHCNKCEKAFSQSSHLAQHQRIHTGEKPYKCNECDKTFSRSTHLTEHQN 691

Query: 498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 555
            H   + +NC+ C  TF+    LI+H R H        C+ CG+ F     L  H ++
Sbjct: 692 THTGEKPYNCNECRKTFSQSTYLIQHQRIHSA-EKPFGCNDCGKAFRYRSALNKHQRL 748

May be involved in transcriptional regulation.

Bos taurus (taxid: 9913)

>sp|O43345|ZN208_HUMAN Zinc finger protein 208 OS=Homo sapiens GN=ZNF208 PE=2 SV=1

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 174/570 (30%), Positives = 253/570 (44%), Gaps = 26/570 (4%)

Query: 25   ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            E+ +KCE C K+F   S +  H  A H  +K YKCK C + +     L  H  +H G K 
Sbjct: 506  EKPYKCEECGKTFSKVSTLTTH-KAIHAGEKPYKCKECGKTFIKVSTLTTHKAIHAGEKP 564

Query: 85   FTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
            + C +C KAFS  S L+KH V H  E   +C+ C + F     L EH + H   + +KC 
Sbjct: 565  YKCKECGKAFSKFSILTKHKVIHTGEKPYKCEECGKAFNWSSNLMEHKRIHTGEKPYKCE 624

Query: 143  CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
             C + F++ + +  H  + H  E  +KC++C K +        H + H   K Y+C EC 
Sbjct: 625  ECGKSFSTFSVLTKH-KVIHTGEKPYKCEECGKAYKWSSTLSYHKKIHTVEKPYKCEECG 683

Query: 201  KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMF 258
            K F    I+ +H R  H  E  Y C  C  +F   STL  H   H    PY C  C   F
Sbjct: 684  KAFNRSAILIKHKR-IHTDEKPYKCEECGKTFSKVSTLTTHKAIHAGEKPYKCKECGKAF 742

Query: 259  PDEKNLRNHECT----SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                 L  H+        + C  C + YK    L  H +      P         KC  C
Sbjct: 743  SKFSILTKHKVIHTGEKPYKCEECGKAYKWPSTLSYHKKIHTGEKP--------YKCEEC 794

Query: 315  QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
             + F     LT HE+ HT EK  YKC  C K F   + F KH + H     +KC  C KA
Sbjct: 795  GKGFSMFSILTKHEVIHTGEKP-YKCEECGKAFSWLSVFSKHKKTHAGEKFYKCEACGKA 853

Query: 375  YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKF-HKCTQCEESFKNK 433
            Y +   L +H + H   + ++C+ CG+ F     L+ H+ IH  +  +KC +C+++F   
Sbjct: 854  YNTFSILTKHKVIHTGEKPYKCEECGKAFNWSSNLMEHKKIHTGETPYKCEECDKAFSWP 913

Query: 434  KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
              L +H   H   K + C +C K F   S L  H   H   E +KC  C K F   ++L 
Sbjct: 914  SSLTEHKATHAGEKPYKCEECGKAFSWPSRLTEHKATHAGEEPYKCEECGKAFNWSSNLM 973

Query: 494  KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
            +H  +H   + + C+ C  +F+T + L +H   H      + C+ CG+ +     L  H 
Sbjct: 974  EHKRIHTGEKPYKCEECGKSFSTFSILTKHKVIHTG-EKPYKCEECGKAYKWSSTLSYHK 1032

Query: 554  KI--IHNLFTCIHCGDTLNNAKDYASHLLI 581
            KI  +   + C  CG         A H +I
Sbjct: 1033 KIHTVEKPYKCEECGKGFVMFSILAKHKVI 1062

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8IYB9|ZN595_HUMAN Zinc finger protein 595 OS=Homo sapiens GN=ZNF595 PE=2 SV=1

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/517 (31%), Positives = 232/517 (44%), Gaps = 24/517 (4%)

Query: 22  SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
           + Q + F+C  C K F   SN  +H    H  +K +KC  C R + Y  +L  H  +H G
Sbjct: 139 TTQSKIFQCNTCVKVFSKFSNSNKH-KIRHTGEKPFKCTECGRSF-YMSHLTQHTGIHAG 196

Query: 82  PKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-F 139
            K + C +C KAF+  ++LSKH R H  E    C+ C + F    VL EH K H   + +
Sbjct: 197 EKPYKCEKCGKAFNRSTSLSKHKRIHTGEKPYTCEECGKAFRRSTVLNEHKKIHTGEKPY 256

Query: 140 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 197
           KC  C + FT  T +  H  + H  E  +KCK+C K F      + H   H   K Y+C 
Sbjct: 257 KCEECGKAFTRSTTLNEHKKI-HTGEKPYKCKECGKAFRWSTSMNEHKNIHTGEKPYKCK 315

Query: 198 ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNP--YMCNHCF 255
           EC K F     + +H +N H  E  Y C  C  +F   S+L+ H   H     Y C  C 
Sbjct: 316 ECGKAFRQSRSLNEH-KNIHTGEKPYTCEKCGKAFNQSSSLIIHRSIHSEQKLYKCEECG 374

Query: 256 LMFPDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKC 311
             F    +L    R H     + C  C + +    HL KH        P T        C
Sbjct: 375 KAFTWSSSLNKHKRIHTGEKPYACEECGKAFYRSSHLAKHKRIHTGEKPYT--------C 426

Query: 312 RYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLC 371
             C + F     L  H+  H+ +K  YKC  C K F +ST+ ++H + H     +KC  C
Sbjct: 427 EECGKAFNQSSTLILHKRIHSGQKP-YKCEECGKAFTRSTTLNEHKKIHTGEKPYKCEEC 485

Query: 372 TKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESF 430
            KA+    +L+ H   H   + ++CK CG+ F     LI+H+ IH E+K +KC +C ++F
Sbjct: 486 GKAFIWSASLNEHKNIHTGEKPYKCKECGKAFNQSSGLIIHRSIHSEQKLYKCEECGKAF 545

Query: 431 KNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKA 490
                L +H   H   K + C +C K +   S L  H  +H   +   C  C K F   +
Sbjct: 546 TRSTALNEHKKIHSGEKPYKCKECGKAYNLSSTLTKHKRIHTGEKPFTCEECGKAFNWSS 605

Query: 491 HLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
            L KH I+H   + + C+ C   F   + L  H R H
Sbjct: 606 SLTKHKIIHTGEKSYKCEECGKAFNRPSTLTVHKRIH 642

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZNA1|ZN836_HUMAN Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 167/570 (29%), Positives = 255/570 (44%), Gaps = 26/570 (4%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ +KC  C K+F   S +  H    H  +K Y+C +C +++R   NL  H ++H G K 
Sbjct: 327 EKPYKCNECGKTFKQGSCLTTHQI-IHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKP 385

Query: 85  FTCAQCDKAFSLKSNLSKHVRHHMENVK-QCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           + C  C K+FS  SNL+ H   H  N   +C  C + F+    L  H   H   + + C 
Sbjct: 386 YKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCD 445

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C+++F+  +++  H    H  E  +KC +C KVFS       H R H   K Y+C +C 
Sbjct: 446 VCDKVFSQRSQLARH-QRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCG 504

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
           K F    ++ +H +  H +E  Y C  C   F   S LV H   H G  PY CN C  +F
Sbjct: 505 KAFKQGSLLTRH-KIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVF 563

Query: 259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
               NL    R H     F C  C   ++    L +H+       P         KC  C
Sbjct: 564 NYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKP--------YKCNVC 615

Query: 315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
            ++F +   L+ H+  HT EK  ++C  C KVF   +   +H + H     +KC+ C KA
Sbjct: 616 GKVFNDSGNLSNHKRIHTGEKP-FQCNECGKVFSYYSCLARHRKIHTGEKPYKCNDCGKA 674

Query: 375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRF-ESEELLIVHQVIHERKFHKCTQCEESFKNK 433
           Y    +L +HL+ H   + + C   G  F +S +L   H+     K HKC+ C  +F + 
Sbjct: 675 YTQRSSLTKHLIIHTGEKPYNCNEFGGAFIQSSKLARYHRNPTGEKPHKCSHCGRTFSHI 734

Query: 434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
             L  H   H     + C +C ++F   S+L  H  +H   + +KC  C KVF H++ L 
Sbjct: 735 TGLTYHQRRHTGEMPYKCIECGQVFNSTSNLARHRRIHTGEKPYKCNECGKVFRHQSTLA 794

Query: 494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
           +H  +H   + + C+ C   F   + L+ H + H      + C+ CG+ FI   KL  H 
Sbjct: 795 RHRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTG-DKPYKCNECGKAFIERSKLVYHQ 853

Query: 554 K--IIHNLFTCIHCGDTLNNAKDYASHLLI 581
           +       + CI CG           H +I
Sbjct: 854 RNHTGEKPYKCIECGKAFGRFSCLNKHQMI 883

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	693
326667289	1202	PREDICTED: zinc finger protein 729-like	0.796	0.459	0.306	8e-69
326665700	1573	PREDICTED: zinc finger protein 91-like [	0.813	0.358	0.292	5e-66
326667110	1395	PREDICTED: zinc finger protein 729-like,	0.796	0.395	0.3	2e-65
326667255	908	PREDICTED: zinc finger protein 91-like [	0.858	0.655	0.299	2e-64
326680667	1782	PREDICTED: zinc finger protein 729-like	0.832	0.323	0.289	2e-64
326667299	1069	PREDICTED: zinc finger protein 91-like,	0.808	0.523	0.305	2e-64
390478794	1513	PREDICTED: zinc finger protein 729-like	0.825	0.378	0.304	2e-64
326667106	941	PREDICTED: zinc finger protein 729-like	0.782	0.575	0.303	4e-64
326666983	853	PREDICTED: zinc finger protein 91-like [	0.776	0.630	0.303	8e-64
326667247	943	PREDICTED: zinc finger protein 850-like	0.783	0.575	0.306	1e-63

>gi|326667289|ref|XP_003198555.1| PREDICTED: zinc finger protein 729-like [Danio rerio]

 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 265/590 (44%), Gaps = 38/590 (6%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ F C  C KSF + +N+ +HM   H  +K + C  C + +    +L  H+++H G K 
Sbjct: 7   EKLFTCTQCGKSFSNSANLNQHMRI-HTGEKPFTCSQCGKSFSQSSSLNLHMRIHTGEKP 65

Query: 85  FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           FTC+QC K+FS  S+L+ H+R H  E    C  C + F     L  H+  H   + F C 
Sbjct: 66  FTCSQCGKSFSQSSSLNLHMRIHTGEKPFTCTQCGKSFSQSSNLNLHMMIHTGEKPFTCT 125

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C + F+  + +  H+   H  E  F C +C K FS     + H R H   K Y+CS+C 
Sbjct: 126 QCGKSFSQSSNLNIHMR-NHTGEKPFTCLQCGKSFSRSTSLNRHQRVHTGEKPYKCSQCS 184

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
           KRFA    ++ H R  H  E  + C  C  SF   S+L  H   H G  P+ C  C   F
Sbjct: 185 KRFARSGTLKTHER-IHTGEKPFTCTQCGKSFSKSSSLNQHMRIHTGKKPFTCTQCGKSF 243

Query: 259 PDEKNLRNHECTSCF----TCPFCQRKYKIEKHLEKHIE--------SCIQLNPTTTVLK 306
               +L  H           C  C + +    +L KH+         SC Q   + +   
Sbjct: 244 SQSSSLNYHMMIHAGEKPSACSQCGKSFSCSSYLNKHMRIHTGEKPFSCTQCGKSFSQSS 303

Query: 307 TLQ------------KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFD 354
           +L              C  C + FR    L  H   HT EK  + C  C K F++S+S  
Sbjct: 304 SLNHHIRIHTGEKPFTCTQCGKSFRRSSHLNHHMRIHTEEKP-FSCTQCGKSFRRSSSLR 362

Query: 355 KHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQV 414
           +HM  H       C  C K++     L+RH+  H   + F C  CG+ F       +H  
Sbjct: 363 QHMRIHTGEKPFTCTQCGKSFIQSSQLNRHMRIHTGEKPFTCTQCGKSFSRSSYFNLHMR 422

Query: 415 IH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDE 473
           IH   K   CTQC +SF+    LK+H+  H   K F C +C K F   SHL  H+++H  
Sbjct: 423 IHTGEKLFSCTQCGKSFRCSSSLKEHMRIHSGEKPFTCTQCGKSFSRSSHLNEHMMIHTG 482

Query: 474 SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTK 533
            +   C  C+K F   +HL++H+++H   +   C  C  +F  + DL  HM  H   +T 
Sbjct: 483 EKPFTCTQCWKSFSRSSHLNQHMMIHTGEKPFTCTLCGKSFGRNFDLKTHMTIHTGENT- 541

Query: 534 HTCDICGEKFINDLKLKAHIKI--IHNLFTCIHCGDTLNNAKDYASHLLI 581
            TC  CG+ F  +  LK H++I      FTC  CG + + +     H+ I
Sbjct: 542 FTCTQCGKSFGRNFDLKIHMRIHTGEKPFTCTLCGKSFSRSSHLNEHMKI 591

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326665700|ref|XP_003198088.1| PREDICTED: zinc finger protein 91-like [Danio rerio]

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 181/619 (29%), Positives = 268/619 (43%), Gaps = 55/619 (8%)

Query: 10   YEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYK 69
            Y+  Q  P       E+ F C  C KSF   S +  H    H  +K + C LC + + + 
Sbjct: 620  YQSSQLTPHMRIHTGEKPFTCTQCGKSFRLISTLNTH-KKIHTGEKPFTCTLCGKSFIFS 678

Query: 70   WNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLE 128
             N   H+++H G K FTC+QC K+FS+ S L++H+R H  E    C  C + F    +L 
Sbjct: 679  SNYNKHMRIHSGEKPFTCSQCGKSFSVSSYLNQHMRIHTGEKPYTCAQCGKSFSQSSILT 738

Query: 129  EHVKSH-QNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHG 187
             H+K H + + F C  C + F   + +  H  +    E  F+C  C K F+    +  H 
Sbjct: 739  PHMKIHTEEKPFTCTECGKSFRQISTLNTHTIL--TGEKPFRCTLCGKSFTFSSNYTKHL 796

Query: 188  RAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH 245
            R H   K + CS+C KRF+    ++QH R  H  E  + C  C  SF  +STL  H   H
Sbjct: 797  RIHTGEKPFTCSQCGKRFSVSSSLKQHMR-IHTGEKPFTCTQCGKSFRQRSTLCRHMEIH 855

Query: 246  --GNPYMCNHCFLMFPDEKNLRNH----------ECTSC--------------------- 272
              G P+ C  C   F     L+ H           CT C                     
Sbjct: 856  TGGKPFTCTQCGQSFRQMATLKGHMEIHTGEKPFRCTQCGKSFTFSSNYNKHMRIHTAEK 915

Query: 273  -FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH 331
             FTC  C + + I     +H+       P T        C  C R FR    L  H+  H
Sbjct: 916  PFTCSQCGKSFSISSSFNQHMRIHTGEKPFT--------CTQCGRSFRQISTLNRHKKIH 967

Query: 332  TMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVR 391
            T EK L  C  C K F  S++++ HM  H       C  C K++    N ++H+  H+  
Sbjct: 968  TGEKPL-TCTLCGKSFTFSSNYNDHMMIHTGVKPFTCTQCGKSFTFSSNYNQHMRIHSGE 1026

Query: 392  RSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
            + F C  CG+ F     LI H  IH   K + C+QC +SF+    LK H+  H   K F 
Sbjct: 1027 KPFTCSQCGKSFSISSYLIKHMRIHTGEKPYTCSQCGQSFRQTSTLKGHMEIHTGEKPFT 1086

Query: 451  CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC 510
            C +C K FR  + L+ H+ +H   +  +C  C K F   ++ ++H+ +H   +   C  C
Sbjct: 1087 CTECGKSFRKIATLKGHMRIHTGEKPFRCTQCGKSFTLSSNYNQHMRIHTGEKPFTCSQC 1146

Query: 511  HLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHNL--FTCIHCGDT 568
              +F+  + L +HMR H      +TC  CG+ F     L  H+K+   +  F C  CG  
Sbjct: 1147 GKSFSMLSSLNQHMRIHTG-EKPYTCTQCGQSFRQTSVLNRHMKVHAGMKPFRCTQCGKR 1205

Query: 569  LNNAKDYASHLLIIHNIES 587
             + +     H+ I   + S
Sbjct: 1206 FSKSSHLKLHMKIHSGVGS 1224

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667110|ref|XP_003198489.1| PREDICTED: zinc finger protein 729-like, partial [Danio rerio]

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 177/590 (30%), Positives = 263/590 (44%), Gaps = 38/590 (6%)

Query: 25   ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            E+ +KC  C K F     ++ H    H   K YKC  C + +    N   H+++H G K 
Sbjct: 427  EKPYKCSHCSKRFTQLGTLKTH-ERIHTGDKPYKCTQCGKSFSQSSNFNLHMRIHTGEKP 485

Query: 85   FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
            FTC QC K+F   S+L+KH+R H  E    C  C + F     L +H++ H   +   C 
Sbjct: 486  FTCTQCGKSFRQASSLNKHMRTHTGEKPFTCTQCGKSFNRSSTLNQHIRIHTGEKPIPCT 545

Query: 143  CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
             C + F   + +  H+ + H  E  F C +C K FS    F+LH R H   K  RC++C 
Sbjct: 546  QCGKSFRQSSSLYKHMRI-HTGEKPFTCTQCGKSFSQSSNFNLHMRIHTGEKPIRCTQCG 604

Query: 201  KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
            K F     + +H R  H  E  + C  C  SF   S+L  H   H G  P+ C  C + F
Sbjct: 605  KSFHQSSSLYKHMR-IHTGEKPFTCTQCGKSFRQASSLNKHMRIHTGEKPFTCTQCGISF 663

Query: 259  P----DEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIE--------SCIQLNPTTTVLK 306
                  ++++R H     FTC  C R +    HL  H+         +C Q   +     
Sbjct: 664  NCSSYLKQHMRIHTGEKPFTCTQCGRSFNRSSHLNHHMRIHTGEKPFTCTQCGKSFNRSS 723

Query: 307  TLQK------------CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFD 354
             L +            C  C + FR    L+ H  +HT EK  + C  C K F +S++F+
Sbjct: 724  NLNQHIRIHTGEKPITCTLCGKSFRQSSSLSKHMRTHTGEKP-FTCTQCGKSFSQSSNFN 782

Query: 355  KHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQV 414
             HM  H       C  C K++    +L++H  TH   + F C  CG+ F     L  H  
Sbjct: 783  LHMRIHTGEKPFTCTQCGKSFRQASSLNKHTRTHTGEKPFTCTQCGKSFNRSSHLNQHIR 842

Query: 415  IH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDE 473
            IH   K   CTQC +SF+    L +H+  H   K F C +C K F   SHL  H+ +H  
Sbjct: 843  IHTGEKPITCTQCGKSFRQSSSLYKHMRIHTGEKPFTCTQCGKSFNCSSHLNQHIRIHTG 902

Query: 474  SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTK 533
             +  +C  C K F   +HL++H+++H   +   C  C  +F+  + L RHM+ H      
Sbjct: 903  EKPFRCTQCGKSFNCSSHLNEHMMIHTGEKPFTCTQCGKSFSKSSSLYRHMKIHTG-EKP 961

Query: 534  HTCDICGEKFINDLKLKAHIKI--IHNLFTCIHCGDTLNNAKDYASHLLI 581
            +TC  C + F     L  H++I      FTC  CG++ + +     H+ I
Sbjct: 962  YTCTECRKSFSQSSSLNLHMRIHTGEKPFTCTECGNSFSKSSSLYRHMKI 1011

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667255|ref|XP_003198540.1| PREDICTED: zinc finger protein 91-like [Danio rerio]

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 189/631 (29%), Positives = 273/631 (43%), Gaps = 36/631 (5%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ F C  C KSF   S++ +HM   H  +K + C  C   +     LK H+++H G K 
Sbjct: 286 EKPFMCTQCGKSFRQASSLNKHMRI-HTGEKPFTCTQCGISFNCSSYLKQHMRIHTGEKP 344

Query: 85  FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           FTC QC ++F+  SNL  H+R H  E    C  C + F     L++H++ H   +   C 
Sbjct: 345 FTCTQCGRSFNRSSNLDHHMRIHTGEKPFTCTQCGKSFNRSSNLDQHIRIHTGEKPITCT 404

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C + F   + +  H+   H  E  F C +C K FS    F+LH R H   K + C++C 
Sbjct: 405 LCGKSFRQSSSLSKHMRT-HTGEKPFTCTQCGKSFSQSSNFNLHMRIHTGEKPFTCTQCG 463

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
           K F     + +H R  H  E  + C  C  SF   S L  H   H G  P  C  C   F
Sbjct: 464 KSFRQASSLNKHMRT-HTGEKPFTCTQCGKSFNRSSHLNQHIRIHTGEKPITCTQCGKSF 522

Query: 259 PDE----KNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                  K++R H     FTC  C + +    +   H+       P T        C  C
Sbjct: 523 RQSSSLYKHMRIHTGEKPFTCTQCGKSFSQSSNFNLHMRIHTGEKPIT--------CTQC 574

Query: 315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
            + F     L  H   HT EK  + C  C K F++++S +KHM  H       C  C K+
Sbjct: 575 GKSFHQSSSLYKHMRIHTGEKP-FTCTQCGKSFRQASSLNKHMRIHTGEKPITCTQCGKS 633

Query: 375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKN 432
           +    +L +H+  H   + F C  CG+ F     L  H  IH  E+ F  CTQC  SF  
Sbjct: 634 FRQSSSLYKHMRIHTGEKPFTCTQCGKSFRQTSSLNKHMRIHTGEKPF-TCTQCGISFNC 692

Query: 433 KKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
             +LKQH+  H   K F C +C + F   S+L +H+ +H   +   C  C K F   ++L
Sbjct: 693 SSYLKQHMRIHTGEKPFTCTQCGRSFNRSSNLDHHMRIHTGEKPFTCTQCGKSFNRSSNL 752

Query: 493 DKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH 552
           D+H+ +H   +   C  C  +F   + L +HMR+H       TC  CG+ F     L  H
Sbjct: 753 DQHIRIHTGEKPITCTLCGKSFRQSSSLSKHMRTHTG-EKPFTCTQCGKSFNRSSNLDQH 811

Query: 553 IKI--IHNLFTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIE 607
           I+I      FTC  CG +   A     H+   H  E   +  Q  K+ N   + L  HI 
Sbjct: 812 IRIHTGEKPFTCTQCGKSFRQASSLNKHMR-THTGEKPFTCTQCGKSFNRSSH-LNQHIR 869

Query: 608 YHHSQNNIESESNQSSGFMYNDETSSYSHIK 638
            H  +  I        G  +   +S Y H++
Sbjct: 870 IHTGEKPIMCT---QCGKSFRQSSSLYKHMR 897

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326680667|ref|XP_003201586.1| PREDICTED: zinc finger protein 729-like [Danio rerio]

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 188/650 (28%), Positives = 278/650 (42%), Gaps = 73/650 (11%)

Query: 25   ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            E+ F C  C K+F+  S++ +HM   H  +K + C  C + + Y  NL  H+++H G K 
Sbjct: 760  EKPFACTQCGKNFNQSSHLNQHMRI-HTGEKPFTCTQCGKSFSYSANLNQHMRIHTGEKP 818

Query: 85   FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
            FTC QC K+FS  +NL++H+R H  E    C  C + F     L +H++ H   + F C 
Sbjct: 819  FTCTQCGKSFSNSANLNQHMRIHTGEKPFTCTQCGKSFSQSSYLNQHMRIHTGEKPFTCS 878

Query: 143  CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
             C + F+    +  H+ + H  E  F C +C K FS     +LH R H   K + C++C 
Sbjct: 879  QCGKSFSQSPYLNQHMRI-HTGEKPFTCSQCGKSFSQSSSLYLHMRIHTGEKPFTCTQCG 937

Query: 201  KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
            K F+    +  H RN H  E  + C  C  SF   ++L  H   H G  P+ C  C   F
Sbjct: 938  KSFSKSSNLNIHMRN-HTGEKPFTCLQCGKSFSQSTSLNLHMRIHTGEKPFTCTQCGKSF 996

Query: 259  PDEKN----LRNHECTSCFTCPFCQRKYKIEKHLEKHI--------ESCIQLNPTTTVLK 306
                N    +RNH     FTC  C + +     L +H+         +C Q   + +   
Sbjct: 997  SQSSNPNIHMRNHIGEKPFTCTQCGKSFSKSSSLNQHMRIHAGEKPSACSQCGKSFSCSS 1056

Query: 307  TLQK------------CRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFD 354
             L K            C  C + F        H + HT EK  + C  C K F  S+S +
Sbjct: 1057 HLNKHMRNHTREKPFSCTQCGKSFSYPSAFNKHMMIHTGEKP-FSCTQCGKSFSYSSSLN 1115

Query: 355  KHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQV 414
             HM  H       C  C K++    +L++H+  H   + F C  CG+ F     L +H  
Sbjct: 1116 YHMMIHAGEKPSACSQCGKSFSCSSHLNKHIRIHTGEKPFTCTQCGKSFIQSSQLNLHMR 1175

Query: 415  IH------------------------------ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
            IH                              E+ F  CTQC +S +    LKQH+  H 
Sbjct: 1176 IHTGEKPFTCTQCGKSFSRSSHLNYHMRIHTGEKPF-SCTQCGKSLRRSSSLKQHMRIHT 1234

Query: 445  KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
              K F C +C K FR  SHL  H+ +H   +   C  C K F   + L+ H++ H   + 
Sbjct: 1235 GEKPFTCTQCGKSFRRSSHLNQHMRIHTGEKPFSCTQCGKSFSQSSSLNLHMMSHTGEKP 1294

Query: 505  HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI--IHNLFTC 562
              C  C  TF   + L +HMR H       TC  CG+ F     L  H++I      F C
Sbjct: 1295 FTCTQCGKTFNCSSHLNQHMRIHTG-EKPFTCTQCGKSFSQSSNLNLHMRIHTREKPFQC 1353

Query: 563  IHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIEYH 609
              CG + +++     H+  IH  E   +  Q  K+ N + +LL  H++ H
Sbjct: 1354 TQCGKSFSHSSSLNQHMR-IHTGEKPFTCSQCGKSFNCL-SLLNKHMKIH 1401

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667299|ref|XP_002661787.2| PREDICTED: zinc finger protein 91-like, partial [Danio rerio]

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 180/590 (30%), Positives = 269/590 (45%), Gaps = 30/590 (5%)

Query: 8   VEYEQEQQIPAQG--KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARM 65
           V+ E++  +   G  K   +  F C  C KS+  K  ++ HM   H  +K + C  C + 
Sbjct: 44  VKIEKKTNLQTDGILKRGDKNSFTCTQCGKSYGSKDYLKIHMRI-HTGEKLFTCPQCGKS 102

Query: 66  YRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDD 124
           +  K  LK H ++H G K +TC +C K+FS  SNL++H+R H  E    C  C + F   
Sbjct: 103 FGRKRELKIHRRIHTGEKPYTCTRCGKSFSQSSNLNQHMRIHTGEKPFTCTQCGKSFNRS 162

Query: 125 EVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKF 183
             L EH+  H   + F C  C + F     ++ H+ M H  EN F+C  C K FS     
Sbjct: 163 SSLNEHMMIHTGEKPFTCTQCGKSFGRNFDLKIHM-MIHTGENPFRCTHCGKSFSQSSYL 221

Query: 184 HLHGRAHAK--FYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
           + H R H +   + C++C K F     +  H +  HN+E  + C  C  +F   S L +H
Sbjct: 222 NQHMRIHTRENPFTCTQCGKSFHRSSSLNNH-KTIHNREKPFTCTQCGKTFNNSSHLYEH 280

Query: 242 F-FHHG-NPYMCNHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESC 295
              H G  P+ C  C   F    NL    R H     FTC  C + +  +++L  H+   
Sbjct: 281 MRIHTGEKPFTCTQCGKNFNQSSNLNQHMRIHTREKPFTCTQCGKSFSQKQNLTIHMRIH 340

Query: 296 IQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDK 355
               P T        C  C + F +   L  H   HT EK  Y C  C K F +S++ ++
Sbjct: 341 TGEKPYT--------CTECGKSFPHTGSLKHHRRIHTGEKP-YTCTRCGKSFSQSSNLNQ 391

Query: 356 HMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVI 415
           HM  H       C  C K++    +L+ H++ H   + F C  CG+ F     L +H +I
Sbjct: 392 HMRIHTGEKPFTCTQCGKSFNRSSSLNEHMMIHTGEKPFTCTQCGKSFGRNFDLKIHMMI 451

Query: 416 H--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDE 473
           H  E  F +CT C +SF    +L QH+  H +   F C +C K F   S L NH  +H  
Sbjct: 452 HTGENPF-RCTHCGKSFSQSSYLNQHMRIHTRENPFTCTQCGKSFHRSSSLNNHKTIHTR 510

Query: 474 SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTK 533
            +   C  C K F + +HL +H+ +H   +   C  C  +F+  ++L RHMR H      
Sbjct: 511 EKPFTCTQCGKTFNNSSHLYEHMRIHTGEKPFTCTQCGKSFSLSSNLNRHMRIHTR-EKP 569

Query: 534 HTCDICGEKFINDLKLKAHIKI--IHNLFTCIHCGDTLNNAKDYASHLLI 581
            TC  CG+ FI    L  H++I      FTC  CG + +++     H+ I
Sbjct: 570 FTCTQCGKSFICSSSLNLHMRIHTGEKPFTCTQCGKSFSSSTHLNEHIRI 619

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390478794|ref|XP_003735581.1| PREDICTED: zinc finger protein 729-like [Callithrix jacchus]

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 184/605 (30%), Positives = 270/605 (44%), Gaps = 33/605 (5%)

Query: 25   ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            E+ +KCE C K+F   S +RRH    H  +K Y+C  C +++    NL  H ++H G  +
Sbjct: 676  EKPYKCENCGKAFTLSSYLRRHRR-IHTGEKVYRCGECGKIFNQSGNLSQHKRVHTGENL 734

Query: 85   FTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
            + C +C KAF   S  ++H + H  E   +C+ C + F+    L  H   H   + FKC 
Sbjct: 735  YQCEECGKAFKWFSTFTRHKIIHTGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPFKCE 794

Query: 143  CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
             C + F   + +  H  M H  E  ++C++C K FS   +   H R H   K Y+C EC 
Sbjct: 795  ECGKAFKHPSTLSTH-RMIHTGEKRYRCQECGKAFSRSSQLTTHKRIHTGEKPYKCEECG 853

Query: 201  KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCNHCFLMF 258
            K F     + +H +  H  E +Y C  C   F   STL  H   H G  PY C  C   F
Sbjct: 854  KAFNRFSYLTKH-KIIHTGEKSYTCEECGKGFNWSSTLTKHKRIHTGEKPYKCEECGKAF 912

Query: 259  PDEKNLRNHECT----SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                NL  H+ T      + C  C + +     L KH      + P         KC  C
Sbjct: 913  SVSSNLATHKMTHTGEKPYKCEECGKGFSWSSTLTKHKIIHTGVKP--------YKCEEC 964

Query: 315  QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
             + F     LT H++ HT EK+ YKC  C K F  S+    H   H     +KC  C  A
Sbjct: 965  GKAFNQSSNLTTHKIIHTGEKS-YKCEECGKAFSHSSILTTHRRIHTGEKPYKCEECGIA 1023

Query: 375  YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKN 432
            +     L +H   H   + F+C+ CG+ F+    L  H++IH  E+ F KC +C ++F  
Sbjct: 1024 FNRSSKLTKHKRIHTGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPF-KCEECGKAFNR 1082

Query: 433  KKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
              HL  H + H   K + C +C K F   S L  H  +H   + +KC  C K F   ++L
Sbjct: 1083 SSHLTTHRIIHTGEKPYKCEECGKAFNQSSTLTTHKFIHAGEKPYKCEECDKAFNRFSYL 1142

Query: 493  DKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH 552
             KH I+H   + + C+ C   F   + L +H R H      + C+ CG+ F     L  H
Sbjct: 1143 TKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTG-EKPYKCNECGKAFNESSNLTTH 1201

Query: 553  IKIIHN---LFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEK--NLNNMYNLLTTHIE 607
             K+IH     + C  CG   N +    +H  IIH  E   + E+     +  ++LTTH  
Sbjct: 1202 -KMIHTGEKPYKCEECGKAFNRSPQLTAH-KIIHTGEKPYKCEECGKAFSQSSILTTHRR 1259

Query: 608  YHHSQ 612
             H  +
Sbjct: 1260 IHTGE 1264

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667106|ref|XP_003198487.1| PREDICTED: zinc finger protein 729-like [Danio rerio]

 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 182/600 (30%), Positives = 259/600 (43%), Gaps = 58/600 (9%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ F C  C KSF H S++  HM   H  +K + C  C + +    +L  H+K+H G K 
Sbjct: 287 EKPFTCPQCGKSFSHSSHLNCHMKI-HTGEKPFTCPHCGKSFSQSSHLNCHMKIHTGEKP 345

Query: 85  FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           FTC QC K+FS  SNL+ H+  H  E    C  C + F     L +H++ H   + F C 
Sbjct: 346 FTCPQCGKSFSQSSNLNCHMTIHTGEKPFTCTQCGKSFTCSSHLHQHMRIHTGEKPFTCT 405

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C + F   + +  HI + H+ E  F C +C K F+     + H R H   K + C++C 
Sbjct: 406 QCGKCFNCSSHLNQHIRI-HSGEKPFTCTQCGKNFNQSSHLNQHMRIHTGEKPFTCTQCG 464

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
           K F+    + QH R  H  E  + C  C  SF   S L  H   H G  P+ C  C   F
Sbjct: 465 KSFSNSANLNQHMR-IHTGEKPFTCTQCGKSFSQSSYLNIHMRIHTGEKPFTCPQCGKSF 523

Query: 259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
              + L    R H     FTC  C + +     L  HI       P T        C  C
Sbjct: 524 SQSQYLNQHMRIHTGEKPFTCSQCGKSFSQSSSLNLHIRIHTGEKPFT--------CTQC 575

Query: 315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
            + F     L  H  +HT EK  + CL C K F +STS ++HM  H    L  C  C K+
Sbjct: 576 GKSFNKSSILNIHMRNHTGEKP-FTCLQCGKSFSQSTSLNQHMRIHTGEKLFTCTQCGKS 634

Query: 375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH------------------ 416
           + +  NL++H+  H   + F C  CG+ F     L +H  IH                  
Sbjct: 635 FSNSANLNQHMRIHTGEKPFTCSQCGKSFSQSSYLNIHMRIHTGEKPFTCPQCGKSFSQS 694

Query: 417 ------------ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHL 464
                       E+ F  CTQC +SF    +L  H+  H   K F C +C K F   + L
Sbjct: 695 PYLNHHMRIHTGEKPF-TCTQCGKSFSQSSNLNIHMRNHSGEKPFTCTQCEKSFSQSTSL 753

Query: 465 QNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 524
             H+ +H   +   C+ C K F+  +  + H+  H   +   C  C   F+  +DL +HM
Sbjct: 754 NRHMRIHTGEKPFTCIQCGKSFIQSSSFNLHMRFHTGEKPFTCTPCRKRFSNSSDLNKHM 813

Query: 525 RSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKDYASHLLI 581
           ++H       TC  CG+ F     LK H+ +IH     FTC  CG + +N  D   H+ I
Sbjct: 814 KTHTG-EKPFTCTQCGKSFSRSSHLKQHM-MIHTGEKPFTCTQCGKSFSNTSDLNKHMRI 871

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326666983|ref|XP_003198441.1| PREDICTED: zinc finger protein 91-like [Danio rerio]

 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 172/566 (30%), Positives = 258/566 (45%), Gaps = 28/566 (4%)

Query: 30  CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ 89
           C  C K F  K+++  HM+  H  +K Y+C  C + + +K +LK H++ H G K F C Q
Sbjct: 40  CTQCGKRFTQKTSLDNHMSI-HTGEKPYRCTECGKTFPHKSSLKHHMRTHTGEKPFACTQ 98

Query: 90  CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
           C K+F  K  L  H+  H  E    C  C + F     L +H+K H   + F C  C + 
Sbjct: 99  CGKSFERKGYLKIHMMIHTGEKPFTCTQCGKSFNRSSSLNKHIKIHTGEKPFTCTQCGKS 158

Query: 148 FTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFAT 205
           F   + + NH+ + H  E  F C +C K F+     +LH R H   K + C++C + F  
Sbjct: 159 FNQSSYLNNHMKI-HTGEKPFTCTQCGKSFNQSSYLNLHMRIHTGEKPFTCTQCGRSFNR 217

Query: 206 EDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDE-- 261
              + +H +  H +E  + C  C+ SF   S L +H   H G  P+ C  C   F     
Sbjct: 218 SSSLNKHMK-IHTEEKPFTCTQCFKSFNRSSHLNNHMKIHTGEKPFTCTQCGKSFSQSTY 276

Query: 262 --KNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFR 319
             K++R H     FTC  C++ +     L KH++      P         +C  C R F 
Sbjct: 277 LNKHMRIHTGEKPFTCTQCEKSFNQSSSLNKHMKIHTGEKPF--------RCTQCGRSFN 328

Query: 320 NEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEK 379
               L +H   HT EK  + C  C K F +S+S +KH++ H       C LC K++    
Sbjct: 329 QSSHLNSHMNIHTGEKP-FTCTQCGKSFNQSSSLNKHIKIHTGEKPFTCTLCGKSFSQSS 387

Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 437
           +L+ H+ TH   +   C  CG  F     L  H  IH  E+ F  CTQC +SF     L 
Sbjct: 388 SLNLHMKTHTGEKPITCTQCGESFNRSANLNEHMKIHTAEKPF-TCTQCGKSFSKSSSLN 446

Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI 497
           QH+  H   K F C +C   F + S L  H+I+H   +   C  C K F   + L+ H++
Sbjct: 447 QHMRIHTGEKPFTCTQCGNSFSYLSSLNKHMIIHTGKKPFTCTQCGKSFSQSSSLNYHMM 506

Query: 498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI-- 555
           +H   +   C  C  +F+  + L +HMR H       +C  CG+ F   L LK H++I  
Sbjct: 507 IHAGEKPSACSQCGKSFSCSSYLNKHMRIHTG-EKPFSCTQCGKSFSQSLFLKQHMRIHT 565

Query: 556 IHNLFTCIHCGDTLNNAKDYASHLLI 581
               F+C  CG + + +     H+ I
Sbjct: 566 GEKPFSCTQCGKSFSQSSSLNHHIRI 591

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326667247|ref|XP_003198537.1| PREDICTED: zinc finger protein 850-like [Danio rerio]

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 175/571 (30%), Positives = 258/571 (45%), Gaps = 28/571 (4%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ ++C  C K+F HKS+++ HM  TH  +K + C  C + +  K +LK H+++H G K 
Sbjct: 254 EKPYRCTECGKTFPHKSSLKHHMR-THTGEKPFACTQCGKNFGRKGDLKIHMRIHTGEKP 312

Query: 85  FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
           FTC QC K+FS  S+L+ H+  H  E    C  C++ F     L +H   H   + F C 
Sbjct: 313 FTCTQCGKSFSQSSSLNYHMMIHAGEKPFTCSQCVKSFSCSSHLNKHTMIHTGEKPFSCT 372

Query: 143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
            C + F     ++ H+ M H  E  F C +C K FS     + H   H   K + C++C 
Sbjct: 373 QCGKSFRHSLFLKQHM-MIHTGEKPFTCTQCGKSFSQSSSLNHHMMIHTGEKPFTCTQCG 431

Query: 201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 258
           K F+    +  H R  H  E  + C  C  SF   S+L  H   H G  P+ C  C   F
Sbjct: 432 KSFSQSSSLNHHMR-IHTGEKPFTCTQCGKSFSQSSSLNHHMRIHTGEKPFTCTQCGKSF 490

Query: 259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                L    R H     FTC  C + +     L +H+       P T        C  C
Sbjct: 491 IQSSQLNRHMRIHTGEKPFTCTHCGKSFSKSSSLNEHMTIHSGEKPFT--------CTQC 542

Query: 315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
           ++ F     L  H   HT EK L+ C  C K F++S+S  +HM  H       C  C   
Sbjct: 543 RKSFSCSSHLNHHMRIHTGEK-LFSCTQCGKSFRRSSSLKEHMRIHTGEKPFTCIQCGNR 601

Query: 375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKN 432
           +     L++H++ H   + F C  CG+ F     L  H  IH  E+ F  CTQC +SF  
Sbjct: 602 FSRSSTLNQHMMIHTGEKPFTCTQCGKSFSQSSSLNQHMRIHTGEKSF-TCTQCGKSFIQ 660

Query: 433 KKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
              L +H+  H   K F C +C K F   SHL  H+ +H   +  +C  C K F   +HL
Sbjct: 661 SSQLNRHMRIHTGEKPFTCTQCGKSFNCSSHLNQHIRIHTGEKPFRCTQCGKSFNCSSHL 720

Query: 493 DKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH 552
           ++H+++H       C  C  +F+  + L RHM+ H       TC  C + F     L  H
Sbjct: 721 NEHMMIHTGERPFTCTQCGKSFSKSSSLYRHMKIHTG-EKPFTCTECRKSFSQSSSLNQH 779

Query: 553 IKI--IHNLFTCIHCGDTLNNAKDYASHLLI 581
           ++I      FTC  CG++ + +    +H+ I
Sbjct: 780 MRIHTGEKPFTCTECGNSFSKSSSLYTHMKI 810

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	693
ZFIN|ZDB-GENE-110914-160	1003	si:dkey-240n22.7 "si:dkey-240n	0.822	0.568	0.302	1.1e-80
ZFIN|ZDB-GENE-110913-159	733	si:ch211-197f20.2 "si:ch211-19	0.822	0.777	0.304	1.6e-79
ZFIN|ZDB-GENE-110913-148	1029	si:dkey-14o6.6 "si:dkey-14o6.6	0.819	0.551	0.306	5.4e-79
ZFIN|ZDB-GENE-110913-173	819	si:dkey-78k22.1 "si:dkey-78k22	0.819	0.693	0.309	8.7e-79
UNIPROTKB|F1RWD7	592	LOC100511574 "Uncharacterized	0.818	0.957	0.311	1.4e-78
ZFIN|ZDB-GENE-110913-157	981	si:ch211-245n8.1 "si:ch211-245	0.858	0.606	0.297	2.3e-78
ZFIN|ZDB-GENE-110913-38	987	si:ch211-208f21.5 "si:ch211-20	0.822	0.577	0.309	3e-78
ZFIN|ZDB-GENE-120214-24	704	si:dkey-195o9.2 "si:dkey-195o9	0.821	0.808	0.303	4.8e-78
ZFIN|ZDB-GENE-110913-117	898	si:ch211-120c15.2 "si:ch211-12	0.857	0.661	0.295	1.6e-77
UNIPROTKB|Q05481	1191	ZNF91 "Zinc finger protein 91"	0.875	0.509	0.295	2.4e-77

ZFIN|ZDB-GENE-110914-160 si:dkey-240n22.7 "si:dkey-240n22.7" [Danio rerio (taxid:7955)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 182/601 (30%), Positives = 288/601 (47%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C+ C KSF  K N++ HM   H  +  Y C+ C R +  K NL+ H  +H G K 
Sbjct:     4 EKPFTCQHCGKSFAQKQNLKVHMRV-HTRETPYTCQDCGRSFNQKTNLEIHRIIHTGEKP 62

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQ-NRRFKCP 142
             FTC QC K+FS K  L  H+R H  E    C  C + F D + L  H++ H  ++ + C 
Sbjct:    63 FTCQQCGKSFSQKQTLKVHMRIHTGEKPFSCHHCGKTFTDKQNLMVHMRIHTGDKPYICT 122

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F+ +  +  H+ + H  E  ++C++C K F+ +    +H   H+  K Y+C +C 
Sbjct:   123 VCGKNFSQKPSLDVHVGI-HTGEKPYQCQQCGKSFNRKQNLQVHMSIHSGDKPYQCQQCG 181

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F  +  ++ H R  H  E  + C+ C  SF  K  L  H   H G  PY C  C   F
Sbjct:   182 KSFNRKQNLQVHMR-IHTGEKPFSCHQCGKSFSQKRNLAIHRRIHTGERPYTCQQCGKSF 240

Query:   259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
               ++NL    R H     + C  C + +  ++HL+ H+   I         K  Q C+ C
Sbjct:   241 TQKQNLKVHMRIHTGDKPYQCQECGKSFIDKQHLKVHMR--IHTGD-----KPYQ-CQQC 292

Query:   315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
              + F  +     H   HT EK  + C  C + F +  +   HM  H  +  ++C  C K+
Sbjct:   293 GKSFNRKQNFQVHMRIHTKEKP-FSCHQCGRSFNRKQNLKVHMRVHTGDKPYQCQQCGKS 351

Query:   375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNK 433
             +  +  LD H+ TH+   +F C+ CG+ F  ++ L +H  IH R K +KC  C ESF  K
Sbjct:   352 FSQKATLDAHMRTHSGLNAFTCQQCGKSFGQKQKLQLHMRIHSREKPYKCQHCGESFSQK 411

Query:   434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
              HL  H   H K K + C +C K F  + +L+ HV +H   + ++C +C K F  ++HL 
Sbjct:   412 AHLTGHERVHTKEKPYTCLQCGKCFSLKQNLKLHVRIHSGEKPYQCQHCGKSFNQRSHLT 471

Query:   494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
              H  +H   +  +C  C  +F    +L  HMR H      +TC  CG++F +   LK H+
Sbjct:   472 GHTRIHTGEKPFSCQQCGKSFAQQTNLKVHMRVHTR-ERPYTCQDCGKRFFHKQNLKVHM 530

Query:   554 KII--HNLFTCIHCGDTLNNAKDYASHLLIIHNIESS---QQVEKNLNNMYNLLTTHIEY 608
             ++      + C  CG + +   +  +H+   H++ +    QQ  K+  +  NL   H+  
Sbjct:   531 RVHTGEKPYVCQQCGKSFSQKTNLDAHMGT-HSVVNPFICQQCGKSFGHKQNL-KIHMRV 588

Query:   609 H 609
             H
Sbjct:   589 H 589

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-159 si:ch211-197f20.2 "si:ch211-197f20.2" [Danio rerio (taxid:7955)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 183/601 (30%), Positives = 271/601 (45%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C  C  SF+  S +++HM   H  +K + C  C R +    +L  H+++H G K 
Sbjct:   118 EKPFTCTQCGISFNCSSYLKQHMRI-HTGEKPFTCTQCGRSFNRSSHLNHHMRIHTGEKP 176

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             FTC QC K+F+  SNL +H+R H  E    C +C + F     L +H+++H   + F C 
Sbjct:   177 FTCTQCGKSFNRSSNLDQHIRIHTGEKPITCTLCGKSFRQSSSLSKHMRTHTGEKPFTCT 236

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F+  +    H+ + H  E  F C +C K F      + H R H   K + C++C 
Sbjct:   237 QCGKSFSQSSNFNLHMRI-HTGEKPFTCTQCGKSFRQASSLNKHMRTHTGEKPFTCTQCG 295

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F     + QH R  H  E    C  C  SF   S+L  H   H G  P+ C  C   F
Sbjct:   296 KSFNRSSHLNQHIR-IHTGEKPITCTQCGKSFRQSSSLYRHMRIHTGEKPFTCTQCGKSF 354

Query:   259 PDEKN----LRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                 N    +R H      TC  C + +     L KH+       P T        C  C
Sbjct:   355 SQSSNFNLHMRIHTGEKPITCTQCGKSFHQSSSLYKHMRIHTGEKPFT--------CTQC 406

Query:   315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
              + F     L  H + HT EK  + C  C K F + +   +HM  H       C  C K+
Sbjct:   407 GKSFSRLSHLNRHMMIHTGEKP-FTCTQCGKSFSRLSHLIRHMMIHTGEKPFTCSQCRKS 465

Query:   375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNK 433
             + +  +L RH+  H   + F C  CG+ F     L +H +IH E K  KCTQC +SF   
Sbjct:   466 FSNLSSLYRHMRIHTGEKPFTCTQCGKSFRQSSNLNLHMMIHTEEKPFKCTQCGKSFSQS 525

Query:   434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
              HL QH++ H   K F C +C K F   S L  H+++H   +   C  C K F   + L+
Sbjct:   526 SHLNQHIMIHTGEKPFKCTQCGKSFIQSSSLNQHMMIHTGEKPFTCPKCGKSFRKSSSLN 585

Query:   494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
             +H ++H   +   C  C ++F+  + L +HMR H       TC  CG+ F     LK H+
Sbjct:   586 EHRMIHTGEKPFTCPKCEMSFSQSSSLNKHMRIHTG-EKPFTCTQCGKSFNQTSSLKDHM 644

Query:   554 KII--HNLFTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIEY 608
             +I      FTC  CG + N +  + +H + IH  E   +  Q  K+ +   +L   H++ 
Sbjct:   645 RIHTGEKPFTCPKCGKSFNQSS-HLNHHMRIHTGEKPFTCTQCGKSFSRPSSL-NKHMKI 702

Query:   609 H 609
             H
Sbjct:   703 H 703

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-148 si:dkey-14o6.6 "si:dkey-14o6.6" [Danio rerio (taxid:7955)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 186/606 (30%), Positives = 272/606 (44%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C  C  SF+  S +++HM   H  +K + C  C R +    +L  H+++H G K 
Sbjct:   227 EKPFTCTQCGISFNCSSYLKQHMRI-HTGEKPFTCTQCGRSFNRSSHLNHHMRIHTGEKP 285

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             FTC QC K+F+  SNL++H+R H  E    C +C + F     L +H+++H   + F C 
Sbjct:   286 FTCTQCGKSFNRSSNLNQHIRIHTGEKPITCTLCGKSFRQSSSLSKHMRTHTGEKPFTCT 345

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F+  +    H+ + H  E  F C +C K F      + H R H   K + C++C 
Sbjct:   346 QCGKSFSQSSNFNLHMRI-HTGEKPFTCTQCGKSFRQASSLNKHTRTHTGEKPFTCTQCG 404

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F     + QH R  H  E    C  C  SF   S+L  H   H G  P+ C  C   F
Sbjct:   405 KSFNRSSHLNQHIR-IHTGEKPITCTQCGKSFRQSSSLYKHMRIHTGEKPFTCTQCGKRF 463

Query:   259 PDEKNLRNH------ECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCR 312
                 NL  H           FTC  C + +    HL +HI       P         +C 
Sbjct:   464 NRSANLNKHIHKKIHTGKKTFTCTQCGKSFNCSSHLNQHIRIHTGEKPF--------RCT 515

Query:   313 YCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCT 372
              C + F     L  H + HT EK  + C  C K F KS+S  +HM+ H     + C  C 
Sbjct:   516 QCGKSFNCSSHLNEHMMIHTGEKP-FTCTQCGKSFSKSSSLYRHMKIHTGEKPYTCTECR 574

Query:   373 KAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESF 430
             K++    +L+ H+  H   + F C  CG  F     L  H  IH  E+ F  CT+C +SF
Sbjct:   575 KSFSQSSSLNLHMRIHTGEKPFTCTECGNSFSKSSSLYRHMKIHTGEKPF-TCTECGKSF 633

Query:   431 KNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKA 490
                  L  H+  H   K F C +C K F H SHL  H+++H   +  KC  C K F  ++
Sbjct:   634 IQSSCLNVHMRIHTGEKPFTCTQCGKSFIHSSHLNQHLMIHTGEKPFKCPQCGKSF-SQS 692

Query:   491 HLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLK 550
             +L KH+ +H     + C  C  TF T  +L RH R H      + C  C ++F +   LK
Sbjct:   693 YLKKHMKIHTGVREYMCLECEKTFITAAELKRHKRIHTG-EKPYKCSQCSKRFAHSGTLK 751

Query:   551 AHIKII--HNLFTCIHC--GDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLT 603
              H +I     L+ C HC  G + N + +   H+ I H  E   +  Q  K+ + + + L 
Sbjct:   752 THERIHTGEKLYKCSHCNCGKSFNQSSNINLHMRI-HTGEKPFTCTQCRKSFS-LLSSLN 809

Query:   604 THIEYH 609
              H+  H
Sbjct:   810 QHMRIH 815

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-110913-173 si:dkey-78k22.1 "si:dkey-78k22.1" [Danio rerio (taxid:7955)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 187/604 (30%), Positives = 270/604 (44%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C  C KSF   SN   HM   H  +K + C  C + +R   +L  H++ H G K 
Sbjct:   191 EKPFTCTQCGKSFSQSSNFNLHMRI-HTGEKPFTCTQCGKSFRQASSLNKHMRTHTGEKP 249

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             FTC QC K+F+  S+L++H+R H  E    C  C + F     L +H++ H   + F C 
Sbjct:   250 FTCTQCGKSFNRSSHLNQHIRIHTGEKPITCTQCGKSFRQSSSLYKHMRIHTGEKPFTCT 309

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F+  +    H+ + H  E    C +C K F      + H R H   K + C++C 
Sbjct:   310 QCGKSFSQSSNFNLHMRI-HTGEKPITCTQCGKSFHQSSSLYKHMRIHTGEKPFTCTQCG 368

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F     + +H R  H +E    C  C  SF   S+L  H   H G  P+ C  C + F
Sbjct:   369 KSFHQASSLNKHMR-IHTEEKPITCTQCGKSFRQTSSLNKHMRIHTGEKPFTCTQCGISF 427

Query:   259 PD----EKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                   ++++R H     FTC  C R +    +L+ H+       P T        C  C
Sbjct:   428 NCSSYLKQHMRIHTGEKPFTCTQCGRSFNRSSNLDHHMRIHTGEKPFT--------CTQC 479

Query:   315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
              + F     L  H   HT EK +  C  C K F++S+S  KHM  H       C  C K+
Sbjct:   480 GKSFNRSSNLDQHIRIHTGEKPI-TCTLCGKSFRQSSSLSKHMRTHTGEKPFTCTQCGKS 538

Query:   375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKN 432
             +    N + H+  H   + F C  CG+ F     L  H  IH  E+ F  CTQC +SF  
Sbjct:   539 FSQSSNFNLHMRIHTGEKPFTCTQCGKSFRQASSLNKHMRIHTGEKPF-TCTQCGKSFNR 597

Query:   433 KKHLKQHLLAHEKVKVFHCPKCPKLFRHESHL-QNHVIVHDESEVHKCLYCFKVFVHKAH 491
               HL QH+  H   K   C +C K FR  S L ++H+ +H   +   C  C K F   ++
Sbjct:   598 SSHLNQHIRIHTGEKPITCTQCGKSFRQSSSLYKHHMRIHTGEKPFTCTQCEKSFNCSSN 657

Query:   492 LDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKA 551
             L+ H+ +H   +   C  C  +F   ++L +HMR H       TC  CG+ F +   L  
Sbjct:   658 LNTHMRIHTGEKPFTCTQCGKSFNFSSNLHQHMRIHTG-EKPFTCPQCGKSFFHLSHLNR 716

Query:   552 HIKIIHNL---FTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTH 605
             H+ +IH     F C  CG + N + D   H+ I H  E   +  Q EK+ N   NL T H
Sbjct:   717 HM-MIHTREKPFKCTQCGKSFNRSSDLHQHIRI-HTGEKPFTCTQCEKSFNCSSNLYT-H 773

Query:   606 IEYH 609
             +  H
Sbjct:   774 MRIH 777

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RWD7 LOC100511574 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 186/597 (31%), Positives = 261/597 (43%)

Query:    29 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA 88
             KC  C K+F   S++  H+   H  +K +KC  C + +    +L  HL  H G K + C+
Sbjct:     1 KCTECGKAFHRHSHLTEHLRC-HTGEKPHKCTECGKAFNRHSHLTQHLNSHAGAKPYRCS 59

Query:    89 QCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCER 146
             +C KAF+  S+L++H+R H  E   +C  C + F     L  H+ SH   +  KC  C +
Sbjct:    60 ECGKAFNRHSSLTQHLRSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTGEKPHKCTECGK 119

Query:   147 IFTSETRMRNHIDMKHADENLFKCKKCLKVFS--DEIKFHLHGRAHAKFYRCSECEKRFA 204
              F   + +  H    H  E   KC +C K F     +  HL+  A  K YRC+EC K F 
Sbjct:   120 AFNRHSHLTEH-QRSHTGEKPHKCTECGKAFHRHSHLTQHLNSHAGVKPYRCAECGKAFN 178

Query:   205 TEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH-GN-PYMCNHCFLMFPDEK 262
                 + QH R+ H  E  + C  C  +F   S L  H   H G  P+ C  C   F    
Sbjct:   179 RHSSLTQHLRS-HTGEKPHKCTECGKAFNQHSHLTQHLSSHTGKKPHKCTECGKAFHSPS 237

Query:   263 NL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMF 318
             +L    R+H       C  C + +    HL +H  S     P         KC  C + F
Sbjct:   238 SLTRHQRSHTGEKPHKCTECGKAFNRHSHLTEHQRSHTGEKP--------HKCTECGKAF 289

Query:   319 RNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSE 378
                  LT H  SH   K  Y+C  C K FK+++   +H+  H     HKC  C KA+   
Sbjct:   290 NRHSHLTEHLNSHAGVKP-YRCTECGKAFKRNSHLTQHLSSHTGEKPHKCTECGKAFNWH 348

Query:   379 KNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLK 437
              +L +HL +H   + + CK CG+ F S   L  H   H   K HKCT+C +SF     L 
Sbjct:   349 SSLTQHLSSHTGEKPYECKECGKAFHSPSSLTRHLSSHTGEKLHKCTECGKSFHWHSSLI 408

Query:   438 QHLLAHEKVKVFHCPKCPKLFRHESHL-QNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL 496
             +HL +H   K + C +C K F   SHL ++H+  H   + HKC  C K F   + L +HL
Sbjct:   409 RHLSSHTGEKPYKCTECGKAFNRHSHLTEHHLSSHTGEKPHKCTECGKAFHWHSQLTQHL 468

Query:   497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKII 556
               H   + H C  C   F   + L RH+ SH      H C  CG+ F     L  H+   
Sbjct:   469 RSHTGEKPHKCTECGKAFHWPSSLTRHLSSHTG-EKPHKCTECGKAFNQHSHLTEHLNS- 526

Query:   557 H---NLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVE-KNLNNMYNLLTTHIEYH 609
             H   N   CI CG   N       HL     ++  +  E     N ++ LT H+  H
Sbjct:   527 HAGANPHKCIECGKAFNQHSSLTRHLRSHTGVKPYKCTECGKAFNRHSHLTEHLRAH 583

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110913-157 si:ch211-245n8.1 "si:ch211-245n8.1" [Danio rerio (taxid:7955)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 188/631 (29%), Positives = 271/631 (42%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C  C KSF   S++ +HM   H  +K + C  C   +     LK H+++H G K 
Sbjct:   367 EKPFMCTQCGKSFRQASSLNKHMRI-HTGEKPFTCTQCGISFNCSSYLKQHMRIHTGEKP 425

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             FTC QC ++F+  SNL  H+R H  E    C  C + F     L++H++ H   +   C 
Sbjct:   426 FTCTQCGRSFNRSSNLDHHMRIHTGEKPFTCTQCGKSFNRSSNLDQHIRIHTGEKPITCT 485

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F   + +  H+   H  E  F C +C K FS    F+LH R H   K + C++C 
Sbjct:   486 LCGKSFRQSSSLSKHM-RTHTGEKPFTCTQCGKSFSQSSNFNLHMRIHTGEKPFTCTQCG 544

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F     + +H R  H  E  + C  C  SF   S L  H   H G  P  C  C   F
Sbjct:   545 KSFRQASSLNKHMRT-HTGEKPFTCTQCGKSFNRSSHLNQHIRIHTGEKPITCTQCGKSF 603

Query:   259 PDE----KNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                    K++R H     FTC  C + +    +   H+       P T        C  C
Sbjct:   604 RQSSSLYKHMRIHTGEKPFTCTQCGKSFSQSSNFNLHMRIHTGEKPIT--------CTQC 655

Query:   315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
              + F     L  H   HT EK  + C  C K F++++S +KHM  H       C  C K+
Sbjct:   656 GKSFHQSSSLYKHMRIHTGEKP-FTCTQCGKSFRQASSLNKHMRIHTGEKPITCTQCGKS 714

Query:   375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKN 432
             +    +L +H+  H   + F C  CG+ F     L  H  IH  E+ F  CTQC  SF  
Sbjct:   715 FRQSSSLYKHMRIHTGEKPFTCTQCGKSFRQTSSLNKHMRIHTGEKPF-TCTQCGISFNC 773

Query:   433 KKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
               +LKQH+  H   K F C +C + F   S+L +H+ +H   +   C  C K F   ++L
Sbjct:   774 SSYLKQHMRIHTGEKPFTCTQCGRSFNRSSNLDHHMRIHTGEKPFTCTQCGKSFNRSSNL 833

Query:   493 DKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH 552
             D+H+ +H   +   C  C  +F   + L +HMR+H       TC  CG+ F     L  H
Sbjct:   834 DQHIRIHTGEKPITCTLCGKSFRQSSSLSKHMRTHTG-EKPFTCTQCGKSFNRSSNLDQH 892

Query:   553 IKII--HNLFTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIE 607
             I+I      FTC  CG +   A     H+   H  E   +  Q  K+ N   +L   HI 
Sbjct:   893 IRIHTGEKPFTCTQCGKSFRQASSLNKHMRT-HTGEKPFTCTQCGKSFNRSSHL-NQHIR 950

Query:   608 YHHXXXXXXXXXXXXXGFMYNDETSSYSHIK 638
              H              G  +   +S Y H++
Sbjct:   951 IH---TGEKPIMCTQCGKSFRQSSSLYKHMR 978

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-38 si:ch211-208f21.5 "si:ch211-208f21.5" [Danio rerio (taxid:7955)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 186/601 (30%), Positives = 267/601 (44%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C  C K F   SN+ +HM   H  +K + C  C + +    +L  H+K H G K 
Sbjct:   230 EKPFTCTQCGKCFTCSSNLNQHMRI-HTGEKPFICTQCGKSFSQSSSLNYHMKFHAGEKP 288

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             FTC QC K+FS  S+L+KH+R H  E    C  C + F     L +H++ H   + F C 
Sbjct:   289 FTCTQCGKSFSQSSHLNKHMRIHTGEKPFTCTQCGKCFTCSSNLNQHMRIHTGEKPFICT 348

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F+  T +  H+ + H  E  F C +C K FS     + H   H   + + C+ C 
Sbjct:   349 QCGKSFSQSTSLNYHMKI-HTGEKPFTCTQCGKSFSHSANLNQHMIIHTGERPFMCTPCG 407

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F+      QH R  H  E  + C  C  SF   S L+ H   H G  P+ C  C   F
Sbjct:   408 KSFSQLSSFNQHMR-IHTGEKLFSCTQCGKSFSQSSNLILHMRIHTGEKPFTCTQCGKSF 466

Query:   259 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                 NL    R H     FTC  C + +     L +H+       P T        C  C
Sbjct:   467 SQSSNLILHTRIHTGEKPFTCTQCGKSFSHSSSLNQHMMIHTGEKPFT--------CTQC 518

Query:   315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
              + F     L  H   HT EK  + C  C K F +S+  +KHM  H       C  C K+
Sbjct:   519 GKSFSQSLSLNQHMKIHTGEKP-FTCTKCGKSFNQSSYLNKHMRIHTGKRSFTCTRCGKS 577

Query:   375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNK 433
             +    +L +H+  H     ++C  CG+   ++  L +H  IH R K   CTQC +SF N 
Sbjct:   578 FTHSSHLKKHMKNHTAETLYQCSECGKSLANKSKLKIHMRIHNRVKLFTCTQCGKSFSNS 637

Query:   434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
              +L QH+  H   K F C +C K F   S+L  H+ +H   +   C  C K F   + L+
Sbjct:   638 ANLNQHMRIHTGEKPFTCTQCGKSFSQSSNLNLHMRIHTGEKPFTCSQCGKSFSQSSSLN 697

Query:   494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
              H+ +H   +   C  C  +F+  + L  HMR+H       TC  CG+ F     L  H+
Sbjct:   698 LHMRIHTGEKPFTCTQCGKSFSQSSILNIHMRNHTG-EKPFTCLQCGKSFSQSTYLNQHM 756

Query:   554 KII--HNLFTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIEY 608
             +I    NLFTC  CG + +N+ +   H+ I H  E   +  Q  K+ +   NL   H+  
Sbjct:   757 RIHTGENLFTCTQCGKSFSNSANLNLHMRI-HTGEKPFTCTQCGKSFSQSSNL-NIHMRI 814

Query:   609 H 609
             H
Sbjct:   815 H 815

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-120214-24 si:dkey-195o9.2 "si:dkey-195o9.2" [Danio rerio (taxid:7955)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 183/602 (30%), Positives = 268/602 (44%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ F C  C  SF+  S +++HM   H  +K + C  C R +    +L  H+++H G K 
Sbjct:   107 EKPFTCTQCGISFNCSSYLKQHMRI-HTGEKPFTCTQCGRSFNRSSHLNHHMRIHTGEKP 165

Query:    85 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             FTC QC K+F+  SNL +H+R H  E    C +C + F     L +H+++H   + F C 
Sbjct:   166 FTCTQCGKSFNRSSNLDQHIRIHTGEKPITCTLCGKSFRQSSSLSKHMRTHTGEKPFTCT 225

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F+  +    H+ + H  E  F C +C K F      + H R H   K + C++C 
Sbjct:   226 QCGKSFSQSSNFNLHMRI-HTGEKPFTCTQCGKSFRQASSLNKHMRTHTGEKPFTCTQCG 284

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 258
             K F     + Q  R  H  E    C  C  SF   S+L  H   H G  P+ C  C   F
Sbjct:   285 KSFNRSSHLNQDKR-IHTGEKPITCTQCGKSFRQSSSLYRHMRIHTGEKPFTCTQCGKSF 343

Query:   259 PDEKN----LRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
                 N    +R H      TC  C + +     L KH+       P T        C  C
Sbjct:   344 SQSSNFNLHMRIHTGEKPITCTQCGKSFHQSSSLYKHMRIHTGEKPFT--------CTQC 395

Query:   315 QRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKA 374
              + F     L  H + HT EK  + C  C K F + +   +HM  H       C  C K+
Sbjct:   396 GKSFSRLSHLNRHMMIHTGEKP-FTCNQCGKSFSRLSHLIRHMMIHTGEKPFTCSQCRKS 454

Query:   375 YPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKN 432
             +    +L RH+  H   + F C  CG+ F     L +H +IH  E+ F KCTQC +SF  
Sbjct:   455 FSILSSLYRHMRIHTGEKPFTCTQCGKSFRQSSNLNLHMMIHTGEKPF-KCTQCGKSFSQ 513

Query:   433 KKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
               HL QH++ H   K F C +C K F   S L  H+++H   +   C  C K F   + L
Sbjct:   514 SSHLNQHIMIHTGEKPFKCTQCGKSFIQSSSLNQHMMIHTGEKPFTCPKCGKSFRKSSSL 573

Query:   493 DKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAH 552
             ++H+++H   +   C  C ++F+  + L +HMR H       TC  CG+ F     LK H
Sbjct:   574 NEHMMIHTGEKPFTCPKCEMSFSQSSSLNKHMRIHTG-EKPFTCTQCGKSFNQTSSLKDH 632

Query:   553 IKII--HNLFTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIE 607
             ++I      FTC  CG + N +  + +H + IH  E   +  Q  K   +   L  TH  
Sbjct:   633 MRIHTGEKPFTCPKCGKSFNQSS-HLNHHMRIHTGEKPFTCSQCSKRFTHSQTL-KTHER 690

Query:   608 YH 609
              H
Sbjct:   691 IH 692

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-110913-117 si:ch211-120c15.2 "si:ch211-120c15.2" [Danio rerio (taxid:7955)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 186/630 (29%), Positives = 279/630 (44%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             +  F+C  C KSF   S++ +H    H  +K + C  C + + Y  +L  H+++H G K 
Sbjct:   171 DNPFRCTHCGKSFSQSSSLNQHKKI-HTREKPFTCTQCGKTFNYSSHLYEHMRIHTGEKP 229

Query:    85 FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRF-KCP 142
             FTC QC K F+  SNL++H+R H  E    C  C + F     L  H+ SH   +  KC 
Sbjct:   230 FTCTQCGKNFNQSSNLNRHMRIHTREKPFTCTQCGKSFICSSSLNLHIMSHTGEKLAKCT 289

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA-KFYRCSECEK 201
              C + F     +  HI + H     + C +C K F    KF LH   H  + YRCS C+K
Sbjct:   290 QCGKSFNRLANLNEHIKI-HTGVKEYLCFECKKTFIS--KFKLHPTFHTGEPYRCSHCDK 346

Query:   202 RFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMFP 259
             RF  +DI++ H R  H  E  + C  C   F   S L  H   H G  P+ C  C   F 
Sbjct:   347 RFNQKDILKTHMR-IHTGEKPFTCTQCGKRFNQSSHLNLHMKIHTGEKPFTCTQCGKSFN 405

Query:   260 DEK--NL--RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQ 315
                  NL  R H     FTC  C R +    HL +H+    +  P T        C  C 
Sbjct:   406 QSSYLNLHMRIHTGEKPFTCTLCWRSFICSSHLNQHMRIHTREKPFT--------CAQCG 457

Query:   316 RMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAY 375
             + F +   L  H   HT EK  + C  C K F  S++ ++HM +H R    +C  C K++
Sbjct:   458 KSFSSSSNLYQHMRIHTGEKP-FTCTQCGKSFNCSSNLNQHMRNHTREKPFRCTQCMKSF 516

Query:   376 PSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNK 433
                 +L+ H+  H   + F C  CGR +     L  H + H  E+  +KC+ C++ F   
Sbjct:   517 NCSSDLNLHMRIHTEEKPFTCTQCGRNYSQSSSLKRHMMSHTEEKPPYKCSHCDKRFNQL 576

Query:   434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD 493
               LK     H   K + C +C K    +S L+ H+ +H   +   C  C K F H A+L+
Sbjct:   577 TDLKTQKRIHTGEKPYSCTQCGKSLASKSKLKIHLRIHTGEKPFTCTQCGKSFSHSANLN 636

Query:   494 KHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHI 553
             +H+I+H       C  C  +F+  +   +HMR H       +C  CG+ F     L  H+
Sbjct:   637 QHMIIHTGERPFMCTPCGKSFSQLSSFNQHMRIHTG-EKPFSCTQCGKSFSQSSNLNLHM 695

Query:   554 KII--HNLFTCIHCGDTLNNAKDYASHLLIIHNIE---SSQQVEKNLNNMYNLLTTHIEY 608
             +I      FTC  CG + +++     H++I H  E   +  Q  K+ +   +L   H+  
Sbjct:   696 RIHTGEKPFTCTQCGKSFSHSSHLNQHMMI-HTGEKPFTCTQCGKSFSQSSSL-NQHMMI 753

Query:   609 HHXXXXXXXXXXXXXGFMYNDETSSYSHIK 638
             H              G  ++  +S Y H+K
Sbjct:   754 H---TGEKPFTCTQCGKSFSKSSSLYRHMK 780

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q05481 ZNF91 "Zinc finger protein 91" [Homo sapiens (taxid:9606)]

 Score = 784 (281.0 bits), Expect = 2.4e-77, P = 2.4e-77
 Identities = 188/637 (29%), Positives = 280/637 (43%)

Query:    25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
             E+ +KCE C K+F H S + +H    H  +K YKC+ C + +     L  H ++H G K 
Sbjct:   291 EKPYKCEECGKAFSHSSTLAKHKRI-HTGEKPYKCEECGKAFSRSSTLAKHKRIHTGEKP 349

Query:    85 FTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 142
             + C +C KAFS  S L+ H + H  E   +CK C + F+    L +H   H   + +KC 
Sbjct:   350 YKCKECGKAFSNSSTLANHKITHTEEKPYKCKECDKAFKRLSTLTKHKIIHAGEKLYKCE 409

Query:   143 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 200
              C + F   + +  H    H  E  +KC++C K F+       H R H   K ++C EC 
Sbjct:   410 ECGKAFNRSSNLTIH-KFIHTGEKPYKCEECGKAFNWSSSLTKHKRFHTREKPFKCKECG 468

Query:   201 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHGN-PYMCNHCFLMF 258
             K F     + +H R  H  E  Y C  C  +F   STL  H   H G  PY    C   F
Sbjct:   469 KAFIWSSTLTRHKR-IHTGEKPYKCEECGKAFRQSSTLTKHKIIHTGEKPYKFEECGKAF 527

Query:   259 PDEKNLRNHECTSCFTCPF-CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRM 317
                  L  H+       P+ C+   K  K       S +  +      K L KC  C + 
Sbjct:   528 RQSLTLNKHKIIHSREKPYKCKECGKAFKQF-----STLTTHKIIHAGKKLYKCEECGKA 582

Query:   318 FRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPS 377
             F +   L+ H++ HT EK+ YKC  C K F  S++  +H   H     +KC  C KA+  
Sbjct:   583 FNHSSSLSTHKIIHTGEKS-YKCEECGKAFLWSSTLRRHKRIHTGEKPYKCEECGKAFSH 641

Query:   378 EKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHL 436
                L +H   H   + ++CK CG+ F +   L  H++ H E K +KC +C+++FK    L
Sbjct:   642 SSALAKHKRIHTGEKPYKCKECGKAFSNSSTLANHKITHTEEKPYKCKECDKTFKRLSTL 701

Query:   437 KQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL 496
              +H + H   K++ C +C K F   S+L  H  +H   + +KC  C K F   + L KH 
Sbjct:   702 TKHKIIHAGEKLYKCEECGKAFNRSSNLTIHKFIHTGEKPYKCEECGKAFNWSSSLTKHK 761

Query:   497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKII 556
              +H   +   C  C   F   + L RH R H      + C+ CG+ F     L  H K I
Sbjct:   762 RIHTREKPFKCKECGKAFIWSSTLTRHKRIHTG-EKPYKCEECGKAFSRSSTLTKH-KTI 819

Query:   557 HN---LFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVE---KNLNNMYNLLTTHIEYHH 610
             H     + C  CG    ++   A H  IIH  E   + E   K  N   NL TTH +  H
Sbjct:   820 HTGEKPYKCKECGKAFKHSSALAKHK-IIHAGEKLYKCEECGKAFNQSSNL-TTH-KIIH 876

Query:   611 XXXXXXXXXXXXXGFMYNDETSSYS--HIKQEDDSCD 645
                           F+++   + +   H +++   C+
Sbjct:   877 TKEKPSKSEECDKAFIWSSTLTEHKRIHTREKTYKCE 913

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	693
KOG1074|consensus	958		99.95
KOG1074|consensus	958		99.95
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.93
KOG3608|consensus	467		99.93
KOG3608|consensus	467		99.93
KOG3623|consensus	1007		99.88
KOG3623|consensus	1007		99.87
KOG3576|consensus	267		99.7
KOG3576|consensus	267		99.65
PLN03086	567	PRLI-interacting factor K; Provisional	99.28
PLN03086	567	PRLI-interacting factor K; Provisional	99.15
PHA00733	128	hypothetical protein	99.01
PHA00733	128	hypothetical protein	99.01
PHA02768	55	hypothetical protein; Provisional	98.75
PHA02768	55	hypothetical protein; Provisional	98.72
KOG3993|consensus	500		98.69
KOG3993|consensus	500		98.65
KOG1146|consensus	1406		98.58
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.5
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.48
PHA00732	79	hypothetical protein	98.33
PHA00616	44	hypothetical protein	98.23
PHA00616	44	hypothetical protein	98.22
KOG1146|consensus	1406		98.19
PHA00732	79	hypothetical protein	98.15
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.81
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.72
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.43
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.39
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.33
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.11
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.05
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.01
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.96
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.78
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.77
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.76
KOG2231|consensus	669		96.34
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.22
KOG2231|consensus	669		96.0
smart00355	26	ZnF_C2H2 zinc finger.	95.96
smart00355	26	ZnF_C2H2 zinc finger.	95.96
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.91
PRK04860	160	hypothetical protein; Provisional	95.7
PRK04860	160	hypothetical protein; Provisional	95.51
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.47
COG5048	467	FOG: Zn-finger [General function prediction only]	94.97
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.96
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.78
COG5048	467	FOG: Zn-finger [General function prediction only]	94.46
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.84
KOG2785|consensus	390		93.59
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.55
KOG2482|consensus	423		92.7
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.58
KOG2785|consensus	390		90.59
KOG2893|consensus	341		90.08
KOG4173|consensus	253		89.85
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	89.78
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.94
KOG2482|consensus	423		88.68
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.51
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	88.38
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	86.13
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.51
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	84.04
KOG2893|consensus	341		84.0
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	83.97

>KOG1074|consensus

Probab=99.95  E-value=5.8e-29  Score=262.76  Aligned_cols=160  Identities=19%  Similarity=0.397  Sum_probs=99.4

Q ss_pred             CccccccccccCCChHHHHHHHhhhcCCCCCccccccCccccccccccccccccC-CcccCCccCCcCCChhhhhccccc
Q psy2875         192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG-NPYMCNHCFLMFPDEKNLRNHECT  270 (693)
Q Consensus       192 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~C~~C~~~f~~~~~l~~H~~~  270 (693)
                      .|-+|-+|-+...-+++|+.|++ .|+||+||+|.+||+.|.++.+|+.|+-+|. +|-.                   .
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyr-tHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~-------------------R  663 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYR-THTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA-------------------R  663 (958)
T ss_pred             Cccceeeeeecccchhhhhhhhh-cccCcCccccccccchhccccchhhcccccccCccc-------------------c
Confidence            46789999999999999999999 8999999999999999999999999998885 2210                   0


Q ss_pred             CcccCC---cccccccchHHHHHHHHHhhccC-CCc----ccccccccccccCcccCCchhhhhhhhcccccCceeeeee
Q psy2875         271 SCFTCP---FCQRKYKIEKHLEKHIESCIQLN-PTT----TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY  342 (693)
Q Consensus       271 ~~~~C~---~C~k~f~~~~~l~~H~~~~~~~~-~~~----~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  342 (693)
                      ..+.|+   +|.+.|.....|..|++++.... +..    ...-...+|..|.+.|.....+..++..+.+..       
T Consensus       664 ~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~-------  736 (958)
T KOG1074|consen  664 VQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPE-------  736 (958)
T ss_pred             ccccCCchhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcc-------
Confidence            234555   66666666666666666644211 111    000112345555555555555555554443331       


Q ss_pred             cCeeecCCccccccccccCCCc----ccccCCCCccCCCchhhhhh
Q psy2875         343 CHKVFKKSTSFDKHMEHHNRNV----LHKCHLCTKAYPSEKNLDRH  384 (693)
Q Consensus       343 C~k~f~~~~~L~~H~~~h~~~~----~~~C~~C~k~f~~~~~L~~H  384 (693)
                            +......+.+.+.++.    +..+..|+..+.....+..+
T Consensus       737 ------s~~~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~  776 (958)
T KOG1074|consen  737 ------SEPDEQMDERTETEELDVTPPPPENSCGRELEGEMAISVR  776 (958)
T ss_pred             ------cCCcccccccccccccccCCCccccccccccCcccccccc
Confidence                  1223333334444433    55666666666655554443

>KOG1074|consensus

Probab=99.95  E-value=3e-29  Score=264.89  Aligned_cols=223  Identities=21%  Similarity=0.408  Sum_probs=141.6

Q ss_pred             cccccCCCCccCCCchhhhhhhhhccCCcccccCccccccCChhHhhhccccccc-----ccccCC---CCccccCChHH
Q psy2875         364 VLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-----KFHKCT---QCEESFKNKKH  435 (693)
Q Consensus       364 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-----k~~~C~---~C~k~f~~~~~  435 (693)
                      .|-+|-+|.+...-++.|+.|.++|+||+||+|.+||++|.++.+|+.||.+|..     -.+.|+   +|.+.|.+...
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            3567777777777777777777777777777777777777777777777777753     347777   77777877777


Q ss_pred             HHHHHHhccCC-C------------ccccCcCcccccchhHHHHHHHhc----------------CCCC----ceecccc
Q psy2875         436 LKQHLLAHEKV-K------------VFHCPKCPKLFRHESHLQNHVIVH----------------DESE----VHKCLYC  482 (693)
Q Consensus       436 L~~H~~~h~~~-~------------~~~C~~C~k~f~~~~~L~~H~~~H----------------~~~~----~~~C~~C  482 (693)
                      |..|+++|.+. .            .=+|..|.+.|.....+..++.-|                +++.    +..+..|
T Consensus       684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e~~~  763 (958)
T KOG1074|consen  684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPENSC  763 (958)
T ss_pred             ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCcccccc
Confidence            77777777632 1            135777777777776666666544                2222    4567777


Q ss_pred             CccccchhhHHHHH-----------------------HhhCCCCcc-cCCcCcccCCChhHHH----HH---H-------
Q psy2875         483 FKVFVHKAHLDKHL-----------------------ILHETSEMH-NCDFCHLTFTTDNDLI----RH---M-------  524 (693)
Q Consensus       483 ~k~f~~~~~L~~H~-----------------------~~H~~~~~~-~C~~C~~~f~~~~~L~----~H---~-------  524 (693)
                      +..+.....+..+-                       ..++++++. .+.+++---.......    .-   +       
T Consensus       764 ~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t  843 (958)
T KOG1074|consen  764 GRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLAT  843 (958)
T ss_pred             ccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhccccccccccccc
Confidence            77766655444332                       123445555 4555543322211000    00   0       


Q ss_pred             ----hhhc-------------------C----CCCcccccccccccCChHhHHHHHhccCC---CcccccchhhcCChHH
Q psy2875         525 ----RSHE-------------------E----YHTKHTCDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKD  574 (693)
Q Consensus       525 ----~~H~-------------------~----~~~~~~C~~C~~~f~~~~~L~~H~~~~H~---~~~C~~C~~~f~~~~~  574 (693)
                          .++.                   +    ......|.+||+.|...+.|..|++ +|+   ||.|.+|++.|..+.+
T Consensus       844 ~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~r-THtg~KPF~C~fC~~aFttrgn  922 (958)
T KOG1074|consen  844 KTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMR-THTGPKPFFCHFCEEAFTTRGN  922 (958)
T ss_pred             ccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhh-cCCCCCCccchhhhhhhhhhhh
Confidence                0000                   0    0011568888888888888888887 665   7888888888888888


Q ss_pred             HHHHhhhhcCCCC
Q psy2875         575 YASHLLIIHNIES  587 (693)
Q Consensus       575 l~~H~~~h~~~~~  587 (693)
                      |+.||.+|+...|
T Consensus       923 LKvHMgtH~w~q~  935 (958)
T KOG1074|consen  923 LKVHMGTHMWVQP  935 (958)
T ss_pred             hhhhhccccccCC
Confidence            8888887776644

>KOG2462|consensus

Probab=99.94  E-value=5.4e-28  Score=226.75  Aligned_cols=132  Identities=28%  Similarity=0.555  Sum_probs=101.8

Q ss_pred             cccCCCCccccCChHHHHHHHHhccC---CCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHH
Q psy2875         420 FHKCTQCEESFKNKKHLKQHLLAHEK---VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL  496 (693)
Q Consensus       420 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~  496 (693)
                      .|+|+.||+.+.+.++|.+|..+|-.   .+.+.|++|||.|.....|+.|+++|+  -|.+|.+|||.|.+..-|+-|+
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccc
Confidence            45666666666666666666666532   456778888888888888888888776  5778888888888888888888


Q ss_pred             HhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875         497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       497 ~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      |+|||||||.|+.|+++|..+++|+.||.+|.+. |+|+|..|+|+|..++.|.+|..
T Consensus       208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~-K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV-KKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccccCCCCccCCcccchhcchHHHHHHHHhhcCC-ccccCcchhhHHHHHHHHHHhhh
Confidence            8888888888888888888888888888888777 78888888888888888888876

>KOG2462|consensus

Probab=99.93  E-value=2.9e-27  Score=221.88  Aligned_cols=133  Identities=35%  Similarity=0.631  Sum_probs=77.5

Q ss_pred             cccccCCCCccCCCchhhhhhhhhccC---CcccccCccccccCChhHhhhcccccccccccCCCCccccCChHHHHHHH
Q psy2875         364 VLHKCHLCTKAYPSEKNLDRHLLTHNV---RRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL  440 (693)
Q Consensus       364 ~~~~C~~C~k~f~~~~~L~~H~~~H~~---~~~~~C~~C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~H~  440 (693)
                      ..|+|+.|++.+.+.++|.+|..+|-.   .+.+.|++||+.|.+...|..|+++|+ -+++|.+|||.|...+.|+-|+
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhccc
Confidence            346666666666666666666666532   344555555555555555555555554 4455555555555555555555


Q ss_pred             HhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHH
Q psy2875         441 LAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI  497 (693)
Q Consensus       441 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~  497 (693)
                      |+|+|||||.|+.|+|+|.++++|+.||++|++.|+|+|..|+|+|..++-|.+|..
T Consensus       208 RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  208 RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            555555555555555555555555555555555555555555555555555555543

>KOG3608|consensus

Probab=99.93  E-value=2.7e-26  Score=219.42  Aligned_cols=230  Identities=25%  Similarity=0.559  Sum_probs=191.9

Q ss_pred             CccccccCChhHhhhcccccc-------------cc-cccC--CCCccccCChHHHHHHHHhccCCCccccCcCcccccc
Q psy2875         397 KSCGRRFESEELLIVHQVIHE-------------RK-FHKC--TQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRH  460 (693)
Q Consensus       397 ~~C~k~f~~~~~L~~H~~~h~-------------~k-~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~  460 (693)
                      ..|+..|.+...+..|...|.             ++ .+.|  ..|.+.|.+++.|+.|++.|+++|...|+.||.-|++
T Consensus       140 edCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~  219 (467)
T KOG3608|consen  140 EDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRT  219 (467)
T ss_pred             hhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhcc
Confidence            456677777666666665552             22 3566  4699999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcC--CCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccc
Q psy2875         461 ESHLQNHVIVHD--ESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI  538 (693)
Q Consensus       461 ~~~L~~H~~~H~--~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~  538 (693)
                      +..|..|++.-+  ...+|+|..|.|.|.+...|..|++.|-.  -|+|+.|+.+....+.|.+|++.-+..++||+|+.
T Consensus       220 ~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~  297 (467)
T KOG3608|consen  220 KTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDE  297 (467)
T ss_pred             ccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccc
Confidence            999999997654  56799999999999999999999999955  49999999999999999999987555569999999


Q ss_pred             cccccCChHhHHHHHhccCC--Cccccc--chhhcCChHHHHHHhhhhc-CCCC----hhhhhhhhhcCchHHHHHhhhh
Q psy2875         539 CGEKFINDLKLKAHIKIIHN--LFTCIH--CGDTLNNAKDYASHLLIIH-NIES----SQQVEKNLNNMYNLLTTHIEYH  609 (693)
Q Consensus       539 C~~~f~~~~~L~~H~~~~H~--~~~C~~--C~~~f~~~~~l~~H~~~h~-~~~~----c~~c~~~f~~~~~~l~~h~~~h  609 (693)
                      |++.|.+.+.|.+|.. +|+  .|.|+.  |.++|.+...|++|++.+| |..|    |..|++.|++- .+|.+|.+.-
T Consensus       298 Cd~~c~~esdL~kH~~-~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G-~~L~~HL~kk  375 (467)
T KOG3608|consen  298 CDTRCVRESDLAKHVQ-VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSG-KSLSAHLMKK  375 (467)
T ss_pred             hhhhhccHHHHHHHHH-hccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccc-hhHHHHHHHh
Confidence            9999999999999999 777  799988  9999999999999999998 5555    99999999999 9999997654


Q ss_pred             c------CCCCCcCCCCCCCCceeeccc
Q psy2875         610 H------SQNNIESESNQSSGFMYNDET  631 (693)
Q Consensus       610 ~------~~~~~~c~~c~~~~~~~~~~~  631 (693)
                      +      |-+.|.=.+|+ .|++--+..
T Consensus       376 H~f~~PsGh~RFtYk~~e-dG~mRLqt~  402 (467)
T KOG3608|consen  376 HGFRLPSGHKRFTYKVDE-DGFMRLQTT  402 (467)
T ss_pred             hcccCCCCCCceeeeecc-Cceeeeeee
Confidence            4      44444444442 366654444

>KOG3608|consensus

Probab=99.93  E-value=2.3e-26  Score=219.93  Aligned_cols=217  Identities=25%  Similarity=0.532  Sum_probs=156.3

Q ss_pred             cccC--CCCccCCCchhhhhhhhhccC------------Ccc-ccc--CccccccCChhHhhhcccccc-cccccCCCCc
Q psy2875         366 HKCH--LCTKAYPSEKNLDRHLLTHNV------------RRS-FRC--KSCGRRFESEELLIVHQVIHE-RKFHKCTQCE  427 (693)
Q Consensus       366 ~~C~--~C~k~f~~~~~L~~H~~~H~~------------~~~-~~C--~~C~k~f~~~~~L~~H~~~h~-~k~~~C~~C~  427 (693)
                      |.|.  .|+..|.+...+..|+..|..            ++| +.|  .-|-+.|.+++.|..|.+.|+ +|...|+.||
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg  214 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG  214 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence            4453  367777777777766655521            112 333  346677777777777777775 6667777777


Q ss_pred             cccCChHHHHHHHHhcc--CCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHH-hhCCCCc
Q psy2875         428 ESFKNKKHLKQHLLAHE--KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI-LHETSEM  504 (693)
Q Consensus       428 k~f~~~~~L~~H~~~h~--~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~  504 (693)
                      ..|.++..|-.|++.-+  ...+|.|..|.|.|.+...|..|+..|-+  .|+|+.|+.+....++|..|++ .|...+|
T Consensus       215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkp  292 (467)
T KOG3608|consen  215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKP  292 (467)
T ss_pred             HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCC
Confidence            77777777777765433  34578888888888888888888877754  5788888888888888888877 4667788


Q ss_pred             ccCCcCcccCCChhHHHHHHhhhcCCCCcccccc--cccccCChHhHHHHHhccCC-----CcccccchhhcCChHHHHH
Q psy2875         505 HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI--CGEKFINDLKLKAHIKIIHN-----LFTCIHCGDTLNNAKDYAS  577 (693)
Q Consensus       505 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~-----~~~C~~C~~~f~~~~~l~~  577 (693)
                      |+|+.|++.|.+.++|.+|..+|. + ..|+|+.  |..+|.+...|+.|++.+|.     +|+|-.|++.|++..+|.+
T Consensus       293 fKCd~Cd~~c~~esdL~kH~~~HS-~-~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~  370 (467)
T KOG3608|consen  293 FKCDECDTRCVRESDLAKHVQVHS-K-TVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSA  370 (467)
T ss_pred             ccccchhhhhccHHHHHHHHHhcc-c-cceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHH
Confidence            888888888888888888888776 3 6788877  88888888888888877773     6888888888888888888


Q ss_pred             HhhhhcCCC
Q psy2875         578 HLLIIHNIE  586 (693)
Q Consensus       578 H~~~h~~~~  586 (693)
                      |++..|+-+
T Consensus       371 HL~kkH~f~  379 (467)
T KOG3608|consen  371 HLMKKHGFR  379 (467)
T ss_pred             HHHHhhccc
Confidence            877777643

>KOG3623|consensus

Probab=99.88  E-value=2.4e-23  Score=216.30  Aligned_cols=79  Identities=24%  Similarity=0.463  Sum_probs=77.4

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      .+|.|+.|+|.|...++|.+|.--|+|.+||+|.+|.|+|+.+-.|..|+|.|.|+ |||+|+.|+|.|+...+..+||.
T Consensus       893 gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGE-KPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  893 GMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGE-KPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             ccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCC-CcchhhhhhhhcccccchHhhhc
Confidence            46999999999999999999999999999999999999999999999999999999 99999999999999999999997

>KOG3623|consensus

Probab=99.87  E-value=2.9e-23  Score=215.64  Aligned_cols=77  Identities=27%  Similarity=0.573  Sum_probs=73.4

Q ss_pred             CcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccCC---CcccccchhhcCChHHHHHHh
Q psy2875         503 EMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN---LFTCIHCGDTLNNAKDYASHL  579 (693)
Q Consensus       503 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~---~~~C~~C~~~f~~~~~l~~H~  579 (693)
                      .+|.|++|+|.|...+.|.+|.--|+|. +||+|.+|.|+|..+..|..|+| .|.   ||.|+.|+++|+..+++..||
T Consensus       893 gmyaCDqCDK~FqKqSSLaRHKYEHsGq-RPyqC~iCkKAFKHKHHLtEHkR-LHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  893 GMYACDQCDKAFQKQSSLARHKYEHSGQ-RPYQCIICKKAFKHKHHLTEHKR-LHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             ccchHHHHHHHHHhhHHHHHhhhhhcCC-CCcccchhhHhhhhhhhhhhhhh-hccCCCcchhhhhhhhcccccchHhhh
Confidence            4699999999999999999999999999 99999999999999999999999 665   999999999999999999999


Q ss_pred             hh
Q psy2875         580 LI  581 (693)
Q Consensus       580 ~~  581 (693)
                      .-
T Consensus       971 NH  972 (1007)
T KOG3623|consen  971 NH  972 (1007)
T ss_pred             cc
Confidence            75

>KOG3576|consensus

Probab=99.70  E-value=5.7e-18  Score=150.39  Aligned_cols=112  Identities=31%  Similarity=0.613  Sum_probs=73.3

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      ..|.|.+|+|.|.-..-|.+|++-|...+.|-|..||++|....+|++|+|+|+|. +||+|..|+++|..+-+|..|++
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgv-rpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV-RPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCc-cccchhhhhHHHHhhccHHHHHH
Confidence            34555555555555555555655555556666666666666666666666666665 66666666666666666666666


Q ss_pred             ccCC-------------CcccccchhhcCChHHHHHHhhhhcCCCC
Q psy2875         555 IIHN-------------LFTCIHCGDTLNNAKDYASHLLIIHNIES  587 (693)
Q Consensus       555 ~~H~-------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  587 (693)
                      .+|.             .|.|+.||.+-.....+..|+..||+.-|
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            5554             47788888888888888888888776644

>KOG3576|consensus

Probab=99.65  E-value=3.4e-17  Score=145.50  Aligned_cols=111  Identities=26%  Similarity=0.468  Sum_probs=81.4

Q ss_pred             cccccCCCCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHH
Q psy2875         418 RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI  497 (693)
Q Consensus       418 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~  497 (693)
                      ...|.|.+|+|.|.-...|.+|++-|...+.|.|..|||.|...-+|++|+++|+|.+||+|..|+|+|++.-+|..|++
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            44577888888888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             hhCCC-----------CcccCCcCcccCCChhHHHHHHhhhc
Q psy2875         498 LHETS-----------EMHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       498 ~H~~~-----------~~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      .-+|.           +.|.|+.||.+-.....+..|++.|+
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            55553           33444444444444444444444443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.28  E-value=4.3e-12  Score=135.43  Aligned_cols=145  Identities=21%  Similarity=0.467  Sum_probs=99.4

Q ss_pred             cccCccccccCChhHhhhcccccccccccCCC--CccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhc
Q psy2875         394 FRCKSCGRRFESEELLIVHQVIHERKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       394 ~~C~~C~k~f~~~~~L~~H~~~h~~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H  471 (693)
                      -.|+.|....... .|..|...-....-.|+.  |+..|. +..+.         +.+.|+.|++.|. .+.|..|+.++
T Consensus       408 V~C~NC~~~i~l~-~l~lHe~~C~r~~V~Cp~~~Cg~v~~-r~el~---------~H~~C~~Cgk~f~-~s~LekH~~~~  475 (567)
T PLN03086        408 VECRNCKHYIPSR-SIALHEAYCSRHNVVCPHDGCGIVLR-VEEAK---------NHVHCEKCGQAFQ-QGEMEKHMKVF  475 (567)
T ss_pred             EECCCCCCccchh-HHHHHHhhCCCcceeCCcccccceee-ccccc---------cCccCCCCCCccc-hHHHHHHHHhc
Confidence            3577777665543 444666544445556764  777773 22333         3357888888885 57788888877


Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCC----------ChhHHHHHHhhhcCCCCccccccccc
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFT----------TDNDLIRHMRSHEEYHTKHTCDICGE  541 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~----------~~~~L~~H~~~H~~~~~~~~C~~C~~  541 (693)
                      +  +|+.|+ ||+.+ .+..|..|+.+|.+.+|+.|..|++.|.          ..+.|..|..+. |. +++.|..||+
T Consensus       476 H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~-rt~~C~~Cgk  549 (567)
T PLN03086        476 H--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GS-RTAPCDSCGR  549 (567)
T ss_pred             C--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CC-cceEccccCC
Confidence            5  678888 88654 5678888888888888888888888874          235788888875 55 7888888887


Q ss_pred             ccCChHhHHHHHhccC
Q psy2875         542 KFINDLKLKAHIKIIH  557 (693)
Q Consensus       542 ~f~~~~~L~~H~~~~H  557 (693)
                      .|.. ..|..|+...|
T Consensus       550 ~Vrl-rdm~~H~~~~h  564 (567)
T PLN03086        550 SVML-KEMDIHQIAVH  564 (567)
T ss_pred             eeee-hhHHHHHHHhh
Confidence            7654 45777776555

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.15  E-value=9.4e-11  Score=125.33  Aligned_cols=143  Identities=17%  Similarity=0.431  Sum_probs=111.9

Q ss_pred             cccCCCCccCCCchhhhhhhhhccCCcccccCc--cccccCChhHhhhcccccccccccCCCCccccCChHHHHHHHHhc
Q psy2875         366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAH  443 (693)
Q Consensus       366 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~H~~~h  443 (693)
                      -.|+-|....+ ...|..|...-.- ..-.|+.  ||..|. +..+..|        +.|+.|++.|. ...|..|+.++
T Consensus       408 V~C~NC~~~i~-l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~-r~el~~H--------~~C~~Cgk~f~-~s~LekH~~~~  475 (567)
T PLN03086        408 VECRNCKHYIP-SRSIALHEAYCSR-HNVVCPHDGCGIVLR-VEEAKNH--------VHCEKCGQAFQ-QGEMEKHMKVF  475 (567)
T ss_pred             EECCCCCCccc-hhHHHHHHhhCCC-cceeCCcccccceee-ccccccC--------ccCCCCCCccc-hHHHHHHHHhc
Confidence            46888987655 4556778754332 3456884  999884 3344444        58999999996 67899999998


Q ss_pred             cCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCcccc----------chhhHHHHHHhhCCCCcccCCcCccc
Q psy2875         444 EKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFV----------HKAHLDKHLILHETSEMHNCDFCHLT  513 (693)
Q Consensus       444 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~----------~~~~L~~H~~~H~~~~~~~C~~C~~~  513 (693)
                      +  +|+.|+ ||+.+ .+..|..|+.+|.+++|+.|.+|++.|.          ..+.|..|..+. |.+++.|..||+.
T Consensus       476 H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~  550 (567)
T PLN03086        476 H--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRS  550 (567)
T ss_pred             C--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCe
Confidence            5  899999 99755 6799999999999999999999999995          245899999986 9999999999988


Q ss_pred             CCChhHHHHHHhh
Q psy2875         514 FTTDNDLIRHMRS  526 (693)
Q Consensus       514 f~~~~~L~~H~~~  526 (693)
                      |.. .+|..|+..
T Consensus       551 Vrl-rdm~~H~~~  562 (567)
T PLN03086        551 VML-KEMDIHQIA  562 (567)
T ss_pred             eee-hhHHHHHHH
Confidence            764 457777654

>PHA00733 hypothetical protein

Probab=99.01  E-value=2.9e-10  Score=99.17  Aligned_cols=53  Identities=25%  Similarity=0.516  Sum_probs=23.0

Q ss_pred             CCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccC
Q psy2875         502 SEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIH  557 (693)
Q Consensus       502 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H  557 (693)
                      ++||.|+.||+.|.+...|..|++.|  . .+|.|++|++.|.....|..|+...|
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h--~-~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT--E-HSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC--C-cCccCCCCCCccCCHHHHHHHHHHhc
Confidence            34444444444444444444444433  1 23444444444444444444444333

>PHA00733 hypothetical protein

Probab=99.01  E-value=2.6e-10  Score=99.52  Aligned_cols=53  Identities=26%  Similarity=0.518  Sum_probs=27.5

Q ss_pred             CcccccccccccCChHhHHHHHhccCCCcccccchhhcCChHHHHHHhhhhcC
Q psy2875         532 TKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHN  584 (693)
Q Consensus       532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~~f~~~~~l~~H~~~h~~  584 (693)
                      +||.|+.||+.|.+...|..|++.+-.+|.|+.||++|.....|.+|+...|+
T Consensus        72 kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         72 SPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            45555555555555555555555211245555555555555555555555544

>PHA02768 hypothetical protein; Provisional

Probab=98.75  E-value=3.3e-09  Score=75.31  Aligned_cols=42  Identities=19%  Similarity=0.543  Sum_probs=22.2

Q ss_pred             ccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhH
Q psy2875          57 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL  100 (693)
Q Consensus        57 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L  100 (693)
                      |.|++||+.|+..++|..||++|+  +||+|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            455555555555555555555554  455555555555544444

>PHA02768 hypothetical protein; Provisional

Probab=98.72  E-value=5.5e-09  Score=74.18  Aligned_cols=21  Identities=24%  Similarity=0.645  Sum_probs=7.7

Q ss_pred             ccccCccccchhhHHHHHHhh
Q psy2875         479 CLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       479 C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      |+.||+.|+..++|..|+++|
T Consensus         8 C~~CGK~Fs~~~~L~~H~r~H   28 (55)
T PHA02768          8 CPICGEIYIKRKSMITHLRKH   28 (55)
T ss_pred             cchhCCeeccHHHHHHHHHhc
Confidence            333333333333333333333

>KOG3993|consensus

Probab=98.69  E-value=2.7e-09  Score=106.28  Aligned_cols=187  Identities=17%  Similarity=0.212  Sum_probs=114.9

Q ss_pred             ccccCccccccCChhHhhhcccccc-cccccCCCCccccCChHHHHHHHHhccC--------CCccccCcCcccccchhH
Q psy2875         393 SFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEK--------VKVFHCPKCPKLFRHESH  463 (693)
Q Consensus       393 ~~~C~~C~k~f~~~~~L~~H~~~h~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~--------~~~~~C~~C~k~f~~~~~  463 (693)
                      .|.|..|...|.+...|.+|.-.-- .-.|+|+.|+|.|+-..+|..|.|.|-.        ..|=+     +...+...
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k-----~~~~~rae  341 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK-----QAVETRAE  341 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChh-----hhhhhhhh
Confidence            4888888888888888888853221 2348888888888888888888887732        11100     00000000


Q ss_pred             HHHHHHh--cCCCCceeccccCccccchhhHHHHHHhhCCCC-----------------cccCCcCcccCCChhHHHHHH
Q psy2875         464 LQNHVIV--HDESEVHKCLYCFKVFVHKAHLDKHLILHETSE-----------------MHNCDFCHLTFTTDNDLIRHM  524 (693)
Q Consensus       464 L~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~-----------------~~~C~~C~~~f~~~~~L~~H~  524 (693)
                      .+.=-+.  -..+.-|.|.+|+|.|.+...|++|+.+|....                 .+.|..|+..+.....--.+.
T Consensus       342 ~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~v  421 (500)
T KOG3993|consen  342 VQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEV  421 (500)
T ss_pred             hhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccce
Confidence            0000000  022335788888888888888888877664321                 144556665555444433444


Q ss_pred             hhhcCCCCcccccccccccCChHhHHHHHhccCC--CcccccchhhcCChHHHHHHhhhhcC
Q psy2875         525 RSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN--LFTCIHCGDTLNNAKDYASHLLIIHN  584 (693)
Q Consensus       525 ~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~--~~~C~~C~~~f~~~~~l~~H~~~h~~  584 (693)
                      ..+.+....-.|+.||..+.++..--.+.+.-+-  .|.|.+|-.+|.+...|.+|+..-|.
T Consensus       422 l~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  422 LYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             eeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence            4443333345678888777777665555543332  58899999999999999999887664

>KOG3993|consensus

Probab=98.65  E-value=4.2e-09  Score=104.93  Aligned_cols=159  Identities=20%  Similarity=0.343  Sum_probs=101.8

Q ss_pred             cccccCCCCcccCChhhHHHHhh--hcCCCCCcccccccccccCChhHHHHHHHhhc-----------------------
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMA--ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK-----------------------   80 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~--~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~-----------------------   80 (693)
                      .-|.|..|...|.+...|.+|.-  .+|   -.|+|++|+|.|+...+|..|.|.|.                       
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~---vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVH---VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEE---eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            45999999999999999999952  123   35999999999999999999999883                       


Q ss_pred             ----------CCCceeccccccccCCchhHHhhhhcccCCc------------------ccCCccCcccCCchHHHHHHh
Q psy2875          81 ----------GPKIFTCAQCDKAFSLKSNLSKHVRHHMENV------------------KQCKICLEIFEDDEVLEEHVK  132 (693)
Q Consensus        81 ----------~~~~~~C~~C~~~F~~~~~L~~H~~~h~~~~------------------~~C~~C~~~f~~~~~L~~H~~  132 (693)
                                .+..|.|.+|++.|.++..|+.|+.+|...+                  +-+..|.-.+.....-..+..
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl  422 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVL  422 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccccee
Confidence                      1235999999999999999999987776221                  123333332222222111111


Q ss_pred             hhC--CCcccccccccccCChHHHHhhhhccCCCCCccccCCcccccCChhhHHHHhh
Q psy2875         133 SHQ--NRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGR  188 (693)
Q Consensus       133 ~h~--~~~~~C~~C~~~f~~~~~L~~H~~~~H~~e~~~~C~~C~~~f~~~~~l~~H~~  188 (693)
                      .+.  .....++.|+..+.++..-..+.+. -..+..|.|.+|.-.|.+...|..|..
T Consensus       423 ~~a~sael~~pp~~~~ppsss~~sgg~~rl-g~~~q~f~~ky~~atfyss~~ltrhin  479 (500)
T KOG3993|consen  423 YVAGSAELELPPYDGSPPSSSGSSGGYGRL-GIAEQGFTCKYCPATFYSSPGLTRHIN  479 (500)
T ss_pred             eeeccccccCCCCCCCCcccCCCCCccccc-cchhhccccccchHhhhcCcchHhHhh
Confidence            111  1223456666555555444333331 123445667777777766666666643

>KOG1146|consensus

Probab=98.58  E-value=2e-08  Score=113.96  Aligned_cols=76  Identities=21%  Similarity=0.418  Sum_probs=62.8

Q ss_pred             cCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhh-------------------------cCCCc
Q psy2875          30 CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH-------------------------KGPKI   84 (693)
Q Consensus        30 C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H-------------------------~~~~~   84 (693)
                      |.-|+..+.+...|..|+...++..+.|+|+.|+..|+....|..|||.-                         .+.+|
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p  518 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP  518 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence            44555567777778888887888888999999999999999999999871                         13468


Q ss_pred             eeccccccccCCchhHHhhhh
Q psy2875          85 FTCAQCDKAFSLKSNLSKHVR  105 (693)
Q Consensus        85 ~~C~~C~~~F~~~~~L~~H~~  105 (693)
                      |.|..|..+++.+.+|.+|++
T Consensus       519 ~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  519 YPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ccceeeeeeeecchHHHHHHH
Confidence            999999999999999999986

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.50  E-value=7.4e-08  Score=58.42  Aligned_cols=26  Identities=42%  Similarity=0.910  Sum_probs=19.1

Q ss_pred             HHHHHHHhhcCCCceeccccccccCC
Q psy2875          71 NLKAHLKMHKGPKIFTCAQCDKAFSL   96 (693)
Q Consensus        71 ~L~~H~~~H~~~~~~~C~~C~~~F~~   96 (693)
                      +|..||++|+|++||.|++|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            46777777777777777777777753

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.48  E-value=1e-07  Score=57.84  Aligned_cols=23  Identities=39%  Similarity=0.714  Sum_probs=10.2

Q ss_pred             HHHHHHhcCCCCceeccccCccc
Q psy2875         464 LQNHVIVHDESEVHKCLYCFKVF  486 (693)
Q Consensus       464 L~~H~~~H~~~~~~~C~~C~k~f  486 (693)
                      |..|+++|+|++||+|++|+++|
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEE
T ss_pred             HHHHhhhcCCCCCCCCCCCcCee
Confidence            34444444444444444444444

...

>PHA00732 hypothetical protein

Probab=98.33  E-value=3e-07  Score=72.37  Aligned_cols=44  Identities=30%  Similarity=0.630  Sum_probs=23.8

Q ss_pred             cccCCcCcccCCChhHHHHHHhh-hcCCCCcccccccccccCChHhHHHHHh
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMRS-HEEYHTKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      ||.|+.||+.|.+...|..|++. |+    ++.|++||++|.   .|..|+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----~~~C~~CgKsF~---~l~~H~~   45 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----LTKCPVCNKSYR---RLNQHFY   45 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----CCccCCCCCEeC---Chhhhhc
Confidence            45566666666666666666553 32    235555555555   3555554

>PHA00616 hypothetical protein

Probab=98.23  E-value=4.6e-07  Score=61.14  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             cccccccccccCChhHHHHHHHhhcCCCceeccc
Q psy2875          56 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ   89 (693)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~   89 (693)
                      ||+|+.||+.|..++.|..|++.|+|++|+.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4666666666666666666666666666666654

>PHA00616 hypothetical protein

Probab=98.22  E-value=5e-07  Score=61.00  Aligned_cols=31  Identities=16%  Similarity=0.537  Sum_probs=12.8

Q ss_pred             cccCcCcccccchhHHHHHHHhcCCCCceec
Q psy2875         449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKC  479 (693)
Q Consensus       449 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  479 (693)
                      |+|+.||+.|.+++.|..|++.|+|++|+.|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            3444444444444444444444444444333

>KOG1146|consensus

Probab=98.19  E-value=2.7e-07  Score=105.10  Aligned_cols=89  Identities=7%  Similarity=0.077  Sum_probs=56.1

Q ss_pred             ccccccccccCChHhHHHHHhccCCCcccccchhhcCChHHHHHHhhhhcCCCChhhhhhhhhcCchHHHHHhhhhcCCC
Q psy2875         534 HTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLTTHIEYHHSQN  613 (693)
Q Consensus       534 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~c~~c~~~f~~~~~~l~~h~~~h~~~~  613 (693)
                      +.|.+|++.|.....+. |+- .-.+|.|..|...|...+.|..|.+.         |-+.|... ..+.-+...+..-.
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~l~~~~~k---------~~~~~~~~-~~~~~~~l~~~d~~ 1328 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLD-VTHRYLCRQCKMAFDGEAPLTAHQRK---------FCFAGRGS-GGSMPPPLRVPDCT 1328 (1406)
T ss_pred             chhhhccccccCcccee-ecc-cchhHHHHHHHhhhcchhHHHHHHHH---------HHhccCcc-ccCCCCcccCcccc
Confidence            77888888888888877 766 33368888888888888888888733         22333333 33444444444444


Q ss_pred             CCcCCCCCCCCceeecccccccccc
Q psy2875         614 NIESESNQSSGFMYNDETSSYSHIK  638 (693)
Q Consensus       614 ~~~c~~c~~~~~~~~~~~~~~~h~~  638 (693)
                      +| |..|   ...|.+...|..|++
T Consensus      1329 ~~-c~~c---~~~~~~~~alqihm~ 1349 (1406)
T KOG1146|consen 1329 YH-CLAC---EVLLSGREALQIHMR 1349 (1406)
T ss_pred             cc-chHH---HhhcchhHHHHHHHH
Confidence            44 5554   455555555555554

>PHA00732 hypothetical protein

Probab=98.15  E-value=1.5e-06  Score=68.51  Aligned_cols=47  Identities=30%  Similarity=0.646  Sum_probs=27.7

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhh
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH   79 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H   79 (693)
                      ||.|++||+.|.+.++|..|++..|++   +.|++||++|.   .|..|++..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhccc
Confidence            466666666666666666666533432   45666666665   355555444

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.81  E-value=2.5e-05  Score=57.07  Aligned_cols=51  Identities=27%  Similarity=0.472  Sum_probs=38.2

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCCCC-CcccccccccccCChhHHHHHHHhhc
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHDLQ-KKYKCKLCARMYRYKWNLKAHLKMHK   80 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~-k~~~C~~C~~~f~~~~~L~~H~~~H~   80 (693)
                      .|.|+.|++ -.+...|..|....|..+ +.+.|++|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            378888888 455778888887778765 4688888887654  47888887764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.72  E-value=3.7e-05  Score=56.20  Aligned_cols=51  Identities=22%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             cccCCcCcccCCChhHHHHHHhh-hcCCCCcccccccccccCChHhHHHHHhccC
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMRS-HEEYHTKHTCDICGEKFINDLKLKAHIKIIH  557 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H  557 (693)
                      .|.|++||+. .+...|..|... |..+.+.+.|++|...+.  ..|..|+...|
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            3667777773 445667777543 444445667777766533  36666666544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.43  E-value=8.1e-05  Score=43.74  Aligned_cols=20  Identities=40%  Similarity=0.846  Sum_probs=8.4

Q ss_pred             ccCcCcccccchhHHHHHHH
Q psy2875         450 HCPKCPKLFRHESHLQNHVI  469 (693)
Q Consensus       450 ~C~~C~k~f~~~~~L~~H~~  469 (693)
                      .|+.|++.|.+++.|..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHh
Confidence            34444444444444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.39  E-value=0.00012  Score=43.01  Aligned_cols=22  Identities=36%  Similarity=0.617  Sum_probs=11.7

Q ss_pred             eeccccCccccchhhHHHHHHh
Q psy2875         477 HKCLYCFKVFVHKAHLDKHLIL  498 (693)
Q Consensus       477 ~~C~~C~k~f~~~~~L~~H~~~  498 (693)
                      |+|+.|++.|.+++.|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4455555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.33  E-value=9.1e-05  Score=62.43  Aligned_cols=73  Identities=23%  Similarity=0.480  Sum_probs=16.6

Q ss_pred             ccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhHHhhhhcc
Q psy2875          29 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH  107 (693)
Q Consensus        29 ~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L~~H~~~h  107 (693)
                      .|..|+..|.+...|..||...|....+     ....+.....|..+++.-. ...+.|.+|++.|.+...|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc-----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4778888888888888888766654322     1112223344444443321 22577777777777777777777643

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.11  E-value=0.00026  Score=41.91  Aligned_cols=23  Identities=22%  Similarity=0.621  Sum_probs=10.8

Q ss_pred             cccccchhhcCChHHHHHHhhhh
Q psy2875         560 FTCIHCGDTLNNAKDYASHLLII  582 (693)
Q Consensus       560 ~~C~~C~~~f~~~~~l~~H~~~h  582 (693)
                      |.|++||+.|.+...|..|++++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555555544

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.05  E-value=0.00032  Score=59.03  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=0.0

Q ss_pred             ccccccccCChhHHHHHHHhh
Q psy2875          59 CKLCARMYRYKWNLKAHLKMH   79 (693)
Q Consensus        59 C~~C~~~f~~~~~L~~H~~~H   79 (693)
                      |.+|+..|.....|..||...
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~   22 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKK   22 (100)
T ss_dssp             ---------------------
T ss_pred             ccccccccccccccccccccc
Confidence            555555555555555555443

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.01  E-value=0.00034  Score=41.41  Aligned_cols=21  Identities=33%  Similarity=0.903  Sum_probs=9.6

Q ss_pred             ccccccccccCChHhHHHHHh
Q psy2875         534 HTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       534 ~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      |.|++|++.|.+...|..|++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            345555555555555555554

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.96  E-value=0.0004  Score=42.58  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=11.4

Q ss_pred             cccccchhhcCChHHHHHHhhhh
Q psy2875         560 FTCIHCGDTLNNAKDYASHLLII  582 (693)
Q Consensus       560 ~~C~~C~~~f~~~~~l~~H~~~h  582 (693)
                      |.|+.|++.|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            44555555555555555554444

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.90  E-value=0.00029  Score=68.26  Aligned_cols=72  Identities=22%  Similarity=0.433  Sum_probs=45.2

Q ss_pred             CCcccccC--CCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhHH
Q psy2875          24 QERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLS  101 (693)
Q Consensus        24 ~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L~  101 (693)
                      ++|||+|+  -|+|.+.+...|+.|+.--|...+...=+          +-..|.-.-...|||.|++|+|.+.+...|+
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKNlNGLK  415 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLK  415 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhccCccce
Confidence            45899997  58899999999999987555333221111          0000111112457888888888888888888


Q ss_pred             hhhh
Q psy2875         102 KHVR  105 (693)
Q Consensus       102 ~H~~  105 (693)
                      .|..
T Consensus       416 YHr~  419 (423)
T COG5189         416 YHRK  419 (423)
T ss_pred             eccc
Confidence            7764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.78  E-value=0.0009  Score=41.00  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=8.3

Q ss_pred             eeccccCccccchhhHHHHHH
Q psy2875         477 HKCLYCFKVFVHKAHLDKHLI  497 (693)
Q Consensus       477 ~~C~~C~k~f~~~~~L~~H~~  497 (693)
                      |+|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            334444444444444444433

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.77  E-value=0.00041  Score=67.24  Aligned_cols=54  Identities=24%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             CCCcccCCc--CcccCCChhHHHHHHhhhc------------------CCCCcccccccccccCChHhHHHHHh
Q psy2875         501 TSEMHNCDF--CHLTFTTDNDLIRHMRSHE------------------EYHTKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       501 ~~~~~~C~~--C~~~f~~~~~L~~H~~~H~------------------~~~~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      ++|||+|++  |+|+++....|+.|+.--+                  .++|||.|++|+|.+.....|+-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            358999987  9999999999999976311                  11255666666666655555555543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.76  E-value=0.00087  Score=46.31  Aligned_cols=29  Identities=28%  Similarity=0.491  Sum_probs=19.2

Q ss_pred             CcccccchhhcCChHHHHHHhhhhcCCCC
Q psy2875         559 LFTCIHCGDTLNNAKDYASHLLIIHNIES  587 (693)
Q Consensus       559 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  587 (693)
                      |-+|++|+..+.+..+|++|+.+.|+.+|
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            67788888888888888888888777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231|consensus

Probab=96.34  E-value=0.0026  Score=69.75  Aligned_cols=151  Identities=19%  Similarity=0.314  Sum_probs=93.1

Q ss_pred             eeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccccc---------ccCChH
Q psy2875         477 HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE---------KFINDL  547 (693)
Q Consensus       477 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~---------~f~~~~  547 (693)
                      +.|.+|++.|.-..            .--.|..| -.|.+...|+.|++.-+   +.+.|.+|-.         .-.++.
T Consensus       100 ~~C~~C~~~~~~~~------------~~~~~~~c-~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~  163 (669)
T KOG2231|consen  100 HSCHICDRRFRALY------------NKKECLHC-TEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRA  163 (669)
T ss_pred             hhcCccccchhhhc------------ccCCCccc-cchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHH
Confidence            67888887763211            22358888 78888999999995433   4466666533         234566


Q ss_pred             hHHHHHhccC------C-CcccccchhhcCChHHHHHHhhhhcCCCC-hh---hhhhhhhcCchHHHHHhhhhcCCCCCc
Q psy2875         548 KLKAHIKIIH------N-LFTCIHCGDTLNNAKDYASHLLIIHNIES-SQ---QVEKNLNNMYNLLTTHIEYHHSQNNIE  616 (693)
Q Consensus       548 ~L~~H~~~~H------~-~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-c~---~c~~~f~~~~~~l~~h~~~h~~~~~~~  616 (693)
                      .|..|+..--      . --.|..|...|-...+|.+|++.+|-.-- |+   .++.-|+.- ..|..|.|.++    |.
T Consensus       164 el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~-~dLe~HfR~~H----fl  238 (669)
T KOG2231|consen  164 ELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDY-DDLEEHFRKGH----FL  238 (669)
T ss_pred             HHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccc-hHHHHHhhhcC----cc
Confidence            7788876211      1 13688999999999999999988775522 42   122334444 88888887655    66


Q ss_pred             CC--CCCCCCceeecccccccccc--------cCCcccc--ccccc
Q psy2875         617 SE--SNQSSGFMYNDETSSYSHIK--------QEDDSCD--TYMDD  650 (693)
Q Consensus       617 c~--~c~~~~~~~~~~~~~~~h~~--------~~~~~~~--~~~~~  650 (693)
                      |+  .|-  ++.|...-.+..+++        |.-|-|+  .-|..
T Consensus       239 CE~~~C~--~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~~~r~Gr~  282 (669)
T KOG2231|consen  239 CEEEFCR--TKKFYVAFELEIELKAHNRFIQHEKCYICRPSRPGRP  282 (669)
T ss_pred             ccccccc--cceeeehhHHHHHHHhhccccchheeccCCcccCCCC
Confidence            87  563  455554433333222        6666665  44444

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.22  E-value=0.0034  Score=43.48  Aligned_cols=30  Identities=27%  Similarity=0.558  Sum_probs=12.1

Q ss_pred             CCcccccccccccCChhHHHHHHHhhcCCC
Q psy2875          54 QKKYKCKLCARMYRYKWNLKAHLKMHKGPK   83 (693)
Q Consensus        54 ~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~   83 (693)
                      +.|-.|++|+..+....+|.+|+.++++.+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            344445555555555555555554444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231|consensus

Probab=96.00  E-value=0.012  Score=64.73  Aligned_cols=52  Identities=29%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             ccCCccCcccCCchHHHHHHhhhCCCccccccc------ccccCChHHHHhhhhccCCCCCccccC
Q psy2875         112 KQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCC------ERIFTSETRMRNHIDMKHADENLFKCK  171 (693)
Q Consensus       112 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~C~~C------~~~f~~~~~L~~H~~~~H~~e~~~~C~  171 (693)
                      -.|..|...|-....|.+|++.++   |.|..|      +.-|.....|..|.+..|     |.|+
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h---~~chfC~~~~~~neyy~~~~dLe~HfR~~H-----flCE  240 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH---EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-----FLCE  240 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce---eheeecCcccccchhcccchHHHHHhhhcC-----cccc
Confidence            357777777777777777776544   334444      345666777777777555     5565

>smart00355 ZnF_C2H2 zinc finger

Probab=95.96  E-value=0.0064  Score=36.45  Aligned_cols=21  Identities=33%  Similarity=0.694  Sum_probs=9.3

Q ss_pred             cCCcCcccCCChhHHHHHHhh
Q psy2875         506 NCDFCHLTFTTDNDLIRHMRS  526 (693)
Q Consensus       506 ~C~~C~~~f~~~~~L~~H~~~  526 (693)
                      .|+.|++.|.+...|..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHH
Confidence            344444444444444444443

>smart00355 ZnF_C2H2 zinc finger

Probab=95.96  E-value=0.0056  Score=36.71  Aligned_cols=23  Identities=17%  Similarity=0.573  Sum_probs=12.9

Q ss_pred             cccccchhhcCChHHHHHHhhhh
Q psy2875         560 FTCIHCGDTLNNAKDYASHLLII  582 (693)
Q Consensus       560 ~~C~~C~~~f~~~~~l~~H~~~h  582 (693)
                      |.|+.|+++|.+...|..|+++|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34555666665555555555543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.91  E-value=0.0042  Score=36.77  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=15.4

Q ss_pred             cccccchhhcCChHHHHHHhhhhcC
Q psy2875         560 FTCIHCGDTLNNAKDYASHLLIIHN  584 (693)
Q Consensus       560 ~~C~~C~~~f~~~~~l~~H~~~h~~  584 (693)
                      |.|+.|+++.. ...|.+|++++|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            56777777776 7777777777664

>PRK04860 hypothetical protein; Provisional

Probab=95.70  E-value=0.0055  Score=55.68  Aligned_cols=39  Identities=23%  Similarity=0.798  Sum_probs=30.7

Q ss_pred             cccccccccccCChhHHHHHHHhhcCCCceeccccccccCCch
Q psy2875          56 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKS   98 (693)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~   98 (693)
                      +|.|. |+.   ....+.+|.++|+++++|.|..|+..|....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            58887 887   6777888888888888888888888776543

>PRK04860 hypothetical protein; Provisional

Probab=95.51  E-value=0.0075  Score=54.82  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=9.5

Q ss_pred             HHHHHHHhcCCCCceeccccCccc
Q psy2875         463 HLQNHVIVHDESEVHKCLYCFKVF  486 (693)
Q Consensus       463 ~L~~H~~~H~~~~~~~C~~C~k~f  486 (693)
                      .++.|.++|+++++|.|..|+..|
T Consensus       130 ~~rrH~ri~~g~~~YrC~~C~~~l  153 (160)
T PRK04860        130 TVRRHNRVVRGEAVYRCRRCGETL  153 (160)
T ss_pred             HHHHHHHHhcCCccEECCCCCcee
Confidence            333344444443344444443333

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.47  E-value=0.018  Score=56.83  Aligned_cols=91  Identities=29%  Similarity=0.518  Sum_probs=61.2

Q ss_pred             chhhHHHHHHhhCCCCc----ccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccc-------cCChHhHHHHHhcc
Q psy2875         488 HKAHLDKHLILHETSEM----HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK-------FINDLKLKAHIKII  556 (693)
Q Consensus       488 ~~~~L~~H~~~H~~~~~----~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~-------f~~~~~L~~H~~~~  556 (693)
                      ++..|+.|...=..+..    -.|..|...|-.-..|.+|+|.-+.     .|-+|++.       |....+|..|-+..
T Consensus       200 ~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE-----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~  274 (493)
T COG5236         200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE-----ACHICDMVGPIRYQYFKSYEDLEAHFRNA  274 (493)
T ss_pred             ecccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhh-----hhhhhhccCccchhhhhCHHHHHHHhhcC
Confidence            34556666543222212    2588888888888888888886554     26666653       88888999998744


Q ss_pred             CCCccccc--ch----hhcCChHHHHHHhhhhcCC
Q psy2875         557 HNLFTCIH--CG----DTLNNAKDYASHLLIIHNI  585 (693)
Q Consensus       557 H~~~~C~~--C~----~~f~~~~~l~~H~~~h~~~  585 (693)
                      |  |.|.+  |-    ..|....+|..|+...|+.
T Consensus       275 h--y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~  307 (493)
T COG5236         275 H--YCCTFQTCRVGKCYVFPYHTELLEHLTRFHKV  307 (493)
T ss_pred             c--eEEEEEEEecCcEEEeccHHHHHHHHHHHhhc
Confidence            4  66643  32    4788889999998877764

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.97  E-value=0.0057  Score=66.89  Aligned_cols=61  Identities=34%  Similarity=0.573  Sum_probs=33.7

Q ss_pred             cccCCCCccccCChHHHHHHHH--hccCC--CccccC--cCcccccchhHHHHHHHhcCCCCceecc
Q psy2875         420 FHKCTQCEESFKNKKHLKQHLL--AHEKV--KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCL  480 (693)
Q Consensus       420 ~~~C~~C~k~f~~~~~L~~H~~--~h~~~--~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~  480 (693)
                      ++.|..|...|.....|..|.+  .|+++  +|+.|+  .|++.|.+...|..|..+|++..++.+.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            4555555555555555555555  45555  555555  4555555555555555555555554444

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.96  E-value=0.013  Score=34.92  Aligned_cols=17  Identities=24%  Similarity=0.810  Sum_probs=6.1

Q ss_pred             ccccccccCChhHHHHH
Q psy2875          59 CKLCARMYRYKWNLKAH   75 (693)
Q Consensus        59 C~~C~~~f~~~~~L~~H   75 (693)
                      |++|++.|.+...|..|
T Consensus         3 C~~C~~~f~s~~~~~~H   19 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQH   19 (25)
T ss_dssp             ETTTTEEESSHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHH
Confidence            33333333333333333

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.78  E-value=0.016  Score=34.59  Aligned_cols=22  Identities=41%  Similarity=0.910  Sum_probs=13.2

Q ss_pred             eeccccccccCCchhHHhhhhc
Q psy2875          85 FTCAQCDKAFSLKSNLSKHVRH  106 (693)
Q Consensus        85 ~~C~~C~~~F~~~~~L~~H~~~  106 (693)
                      |.|++|++.|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666553

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.46  E-value=0.013  Score=63.98  Aligned_cols=149  Identities=21%  Similarity=0.360  Sum_probs=108.5

Q ss_pred             cccccCCCCcccCChhhHHHHhhh-cCCCC--Cccccc--ccccccCChhHHHHHHHhhcCCCceeccc--cccccCCch
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMAA-THDLQ--KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKS   98 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~--k~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~F~~~~   98 (693)
                      .++.|..|...|.....|.+|.+. .|+++  +++.|+  .|++.|.....|..|..+|++..++.+..  +...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            479999999999999999999885 79999  899999  79999999999999999999888887765  444444443


Q ss_pred             hHHhhh------hcccCCcccCC--ccCcccCCchHHHHHHhhhC---CCcccccccccccCChHHHHhhhhccCCCCCc
Q psy2875          99 NLSKHV------RHHMENVKQCK--ICLEIFEDDEVLEEHVKSHQ---NRRFKCPCCERIFTSETRMRNHIDMKHADENL  167 (693)
Q Consensus        99 ~L~~H~------~~h~~~~~~C~--~C~~~f~~~~~L~~H~~~h~---~~~~~C~~C~~~f~~~~~L~~H~~~~H~~e~~  167 (693)
                      .-..+.      ..+....+.+.  .|...+.....+..|...+.   ...+.+..|.+.|.....|..|++ .|....+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  446 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKK-IHTNHAP  446 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccc-ccccCCc
Confidence            321111      12223334442  36667777777777776665   335778899999999999999987 6666666


Q ss_pred             cccCCccc
Q psy2875         168 FKCKKCLK  175 (693)
Q Consensus       168 ~~C~~C~~  175 (693)
                      +.|..+..
T Consensus       447 ~~~~~~~~  454 (467)
T COG5048         447 LLCSILKS  454 (467)
T ss_pred             eeeccccc
Confidence            55554443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.84  E-value=0.03  Score=34.17  Aligned_cols=21  Identities=33%  Similarity=0.912  Sum_probs=16.7

Q ss_pred             cccCCCCcccCChhhHHHHhh
Q psy2875          28 FKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        28 ~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      |.|+.|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            678888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2785|consensus

Probab=93.59  E-value=0.11  Score=52.71  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=40.7

Q ss_pred             ceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccc---cccCChHhHHHH
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICG---EKFINDLKLKAH  552 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~---~~f~~~~~L~~H  552 (693)
                      |-.|-.|++.|.+...-..||..++|--  .=+.  .-.+....|..=+..--+  .-|.|-.|+   +.|.+....+.|
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~Hgff--IPdr--eYL~D~~GLl~YLgeKV~--~~~~CL~CN~~~~~f~sleavr~H  239 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFF--IPDR--EYLTDEKGLLKYLGEKVG--IGFICLFCNELGRPFSSLEAVRAH  239 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCc--CCch--HhhhchhHHHHHHHHHhc--cCceEEEeccccCcccccHHHHHH
Confidence            4556667777666666666766665521  0000  001112222222221111  347888888   888888889999


Q ss_pred             Hhc
Q psy2875         553 IKI  555 (693)
Q Consensus       553 ~~~  555 (693)
                      |..
T Consensus       240 M~~  242 (390)
T KOG2785|consen  240 MRD  242 (390)
T ss_pred             Hhh
Confidence            873

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.55  E-value=0.037  Score=33.73  Aligned_cols=22  Identities=41%  Similarity=0.892  Sum_probs=13.3

Q ss_pred             eeccccccccCCchhHHhhhhc
Q psy2875          85 FTCAQCDKAFSLKSNLSKHVRH  106 (693)
Q Consensus        85 ~~C~~C~~~F~~~~~L~~H~~~  106 (693)
                      |.|.+|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566666666666666666553

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=92.70  E-value=0.14  Score=50.78  Aligned_cols=22  Identities=36%  Similarity=0.797  Sum_probs=16.0

Q ss_pred             eeccccccccCCchhHHhhhhc
Q psy2875          85 FTCAQCDKAFSLKSNLSKHVRH  106 (693)
Q Consensus        85 ~~C~~C~~~F~~~~~L~~H~~~  106 (693)
                      +.|-+|.+.|..+..|+.|||.
T Consensus       196 ~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHh
Confidence            6777777777777777777753

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.58  E-value=0.18  Score=50.04  Aligned_cols=79  Identities=29%  Similarity=0.505  Sum_probs=40.6

Q ss_pred             ccccc--cccccCChhHHHHHHHhhcCCCceecccccc---ccC------CchhHHhhhhccc-C----CcccCCccCcc
Q psy2875          57 YKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDK---AFS------LKSNLSKHVRHHM-E----NVKQCKICLEI  120 (693)
Q Consensus        57 ~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~---~F~------~~~~L~~H~~~h~-~----~~~~C~~C~~~  120 (693)
                      |.|+.  |..+......|..|.+.-++.  +.|.+|-.   .|.      ++..|..|...-. +    .--.|..|...
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~  229 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY  229 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence            56664  666666666777777765442  56666632   222      3334444433222 1    11235555555


Q ss_pred             cCCchHHHHHHhhhCCC
Q psy2875         121 FEDDEVLEEHVKSHQNR  137 (693)
Q Consensus       121 f~~~~~L~~H~~~h~~~  137 (693)
                      |-+...|..|+|.-+++
T Consensus       230 FYdDDEL~~HcR~~HE~  246 (493)
T COG5236         230 FYDDDELRRHCRLRHEA  246 (493)
T ss_pred             ecChHHHHHHHHhhhhh
Confidence            55555555555544443

>KOG2785|consensus

Probab=90.59  E-value=0.5  Score=48.14  Aligned_cols=50  Identities=18%  Similarity=0.323  Sum_probs=41.8

Q ss_pred             CcccccccccccCChHhHHHHHhccCC-------------------------Ccccccch---hhcCChHHHHHHhhh
Q psy2875         532 TKHTCDICGEKFINDLKLKAHIKIIHN-------------------------LFTCIHCG---DTLNNAKDYASHLLI  581 (693)
Q Consensus       532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~-------------------------~~~C~~C~---~~f~~~~~l~~H~~~  581 (693)
                      -|-.|-.|++.|.+...-..||...|.                         -|.|-.|+   +.|.+......||+.
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            357788888888888888888887776                         26799998   999999999999986

>KOG2893|consensus

Probab=90.08  E-value=0.11  Score=48.73  Aligned_cols=45  Identities=27%  Similarity=0.637  Sum_probs=29.4

Q ss_pred             CcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHH
Q psy2875          25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAH   75 (693)
Q Consensus        25 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H   75 (693)
                      +||| |-.|++.|.+..-|..|++.     |-|+|.+|.+.+-+--.|..|
T Consensus         9 ~kpw-cwycnrefddekiliqhqka-----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKA-----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhh-----ccceeeeehhhhccCCCceee
Confidence            4555 77777777777777777663     337777777665555555555

>KOG4173|consensus

Probab=89.85  E-value=0.13  Score=47.26  Aligned_cols=76  Identities=24%  Similarity=0.592  Sum_probs=39.6

Q ss_pred             ccCCc--CcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccCC------------Cccc--ccchhh
Q psy2875         505 HNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN------------LFTC--IHCGDT  568 (693)
Q Consensus       505 ~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~------------~~~C--~~C~~~  568 (693)
                      |.|++  |...|........|-.+-++.    .|..|.+.|.+..-|..|+...|.            .|.|  ..|+..
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            44444  444454444444444333232    355555555555555555544443            3556  456666


Q ss_pred             cCChHHHHHHhhhhcC
Q psy2875         569 LNNAKDYASHLLIIHN  584 (693)
Q Consensus       569 f~~~~~l~~H~~~h~~  584 (693)
                      |.+...-+.||...|.
T Consensus       156 FkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  156 FKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhhhhhhhhHHHHhcc
Confidence            6666666666655553

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=89.78  E-value=0.25  Score=29.45  Aligned_cols=17  Identities=29%  Similarity=0.690  Sum_probs=7.4

Q ss_pred             ccccccccCChhHHHHHH
Q psy2875          59 CKLCARMYRYKWNLKAHL   76 (693)
Q Consensus        59 C~~C~~~f~~~~~L~~H~   76 (693)
                      |+.||+.| ....|..|+
T Consensus         5 C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    5 CPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             CCCCCCEE-CHHHHHHHH
Confidence            44444444 334444443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.94  E-value=0.29  Score=31.80  Aligned_cols=22  Identities=23%  Similarity=0.738  Sum_probs=16.8

Q ss_pred             ccccCCCCcccCChhhHHHHhh
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      +|.|++|++.|.+...+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5778888888887777777765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=88.68  E-value=0.51  Score=47.01  Aligned_cols=107  Identities=20%  Similarity=0.360  Sum_probs=65.4

Q ss_pred             cccCCccCcccC-CchHHHHHH-hhhC---C-------------------CcccccccccccCChHHHHhhhhcc-CCCC
Q psy2875         111 VKQCKICLEIFE-DDEVLEEHV-KSHQ---N-------------------RRFKCPCCERIFTSETRMRNHIDMK-HADE  165 (693)
Q Consensus       111 ~~~C~~C~~~f~-~~~~L~~H~-~~h~---~-------------------~~~~C~~C~~~f~~~~~L~~H~~~~-H~~e  165 (693)
                      ..+|-.|...+. +++....|+ .+|.   .                   .+++|-.|.+.|+.+..|+.||+.. |..-
T Consensus       144 slqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrri  223 (423)
T KOG2482|consen  144 SLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRRI  223 (423)
T ss_pred             eeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCccc
Confidence            457999988765 556677776 3453   1                   2589999999999999999999854 3222


Q ss_pred             CccccCCcccccC--------C----hhhHH-----HHhhh---------cC-Cc--cccccccccCCChHHHHHHHhhh
Q psy2875         166 NLFKCKKCLKVFS--------D----EIKFH-----LHGRA---------HA-KF--YRCSECEKRFATEDIMRQHFRNY  216 (693)
Q Consensus       166 ~~~~C~~C~~~f~--------~----~~~l~-----~H~~~---------h~-~~--~~C~~C~~~f~~~~~l~~H~~~~  216 (693)
                      .|- =.+-++-|.        +    .+.+.     .+...         +. .+  ..|-.|.....+...|..||+.+
T Consensus       224 nPk-nreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~v  302 (423)
T KOG2482|consen  224 NPK-NREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIV  302 (423)
T ss_pred             CCC-ccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHH
Confidence            220 011111110        0    00110     00000         01 22  47999999999999999999988


Q ss_pred             cC
Q psy2875         217 HN  218 (693)
Q Consensus       217 H~  218 (693)
                      |.
T Consensus       303 He  304 (423)
T KOG2482|consen  303 HE  304 (423)
T ss_pred             HH
Confidence            83

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.51  E-value=0.29  Score=31.80  Aligned_cols=22  Identities=27%  Similarity=0.809  Sum_probs=13.8

Q ss_pred             cccccccccccCChHhHHHHHh
Q psy2875         533 KHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       533 ~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      +|.|++|++.|.....+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4566666666666666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=88.38  E-value=0.43  Score=28.43  Aligned_cols=8  Identities=75%  Similarity=1.809  Sum_probs=3.1

Q ss_pred             cccccccc
Q psy2875         536 CDICGEKF  543 (693)
Q Consensus       536 C~~C~~~f  543 (693)
                      |+.||+.|
T Consensus         5 C~~CgR~F   12 (25)
T PF13913_consen    5 CPICGRKF   12 (25)
T ss_pred             CCCCCCEE
Confidence            33333333

>TIGR00622 ssl1 transcription factor ssl1

Probab=86.13  E-value=1.1  Score=37.60  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=11.2

Q ss_pred             ccccCccccccCChhHhhhccccc
Q psy2875         393 SFRCKSCGRRFESEELLIVHQVIH  416 (693)
Q Consensus       393 ~~~C~~C~k~f~~~~~L~~H~~~h  416 (693)
                      .|+|+.|...|-..-.+..|..+|
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhcc
Confidence            455555555554444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.51  E-value=1.6  Score=36.82  Aligned_cols=17  Identities=24%  Similarity=0.493  Sum_probs=7.4

Q ss_pred             ccccCccccccCChhHh
Q psy2875         393 SFRCKSCGRRFESEELL  409 (693)
Q Consensus       393 ~~~C~~C~k~f~~~~~L  409 (693)
                      |-.|++||-...+...|
T Consensus        15 P~~CpiCgLtLVss~HL   31 (112)
T TIGR00622        15 PVECPICGLTLILSTHL   31 (112)
T ss_pred             CCcCCcCCCEEeccchH
Confidence            44444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=84.04  E-value=0.58  Score=30.04  Aligned_cols=9  Identities=33%  Similarity=0.988  Sum_probs=4.1

Q ss_pred             CccccCcCc
Q psy2875         447 KVFHCPKCP  455 (693)
Q Consensus       447 ~~~~C~~C~  455 (693)
                      .++.||.||
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            344444444

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893|consensus

Probab=84.00  E-value=0.31  Score=45.73  Aligned_cols=51  Identities=25%  Similarity=0.474  Sum_probs=40.5

Q ss_pred             CcccccccccccCChHhHHHHHhccCCCcccccchhhcCChHHHHHHhhhhcCC
Q psy2875         532 TKHTCDICGEKFINDLKLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNI  585 (693)
Q Consensus       532 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~C~~C~~~f~~~~~l~~H~~~h~~~  585 (693)
                      ||| |-.|+..|.....|.+|++..|  |+|.+|-+...+--.|..|-...|.|
T Consensus        10 kpw-cwycnrefddekiliqhqkakh--fkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQKAKH--FKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhhhcc--ceeeeehhhhccCCCceeehhhhhhh
Confidence            555 8899999999999999998666  99999988888888888874444443

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=83.97  E-value=0.75  Score=29.50  Aligned_cols=8  Identities=25%  Similarity=0.650  Sum_probs=3.1

Q ss_pred             cccCCcCc
Q psy2875         504 MHNCDFCH  511 (693)
Q Consensus       504 ~~~C~~C~  511 (693)
                      |+.|++||
T Consensus        17 ~~~CP~Cg   24 (33)
T cd00350          17 PWVCPVCG   24 (33)
T ss_pred             CCcCcCCC
Confidence            33344443

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	693
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-20
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-19
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		6e-17
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		6e-11
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-08
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		1e-08
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		2e-07
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-05
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-04
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		1e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		2e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		6e-06
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-05
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-04
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		1e-05
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		3e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		8e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		1e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		2e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		2e-05
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		7e-05
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		8e-05
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		3e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		4e-04
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		5e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 47  MAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRH 106
            AA    +K Y C  C + +    +L  H + H G K + C +C K+FS K +L++H R 
Sbjct: 12  QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 107 HM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHAD 164
           H  E   +C  C + F     L  H ++H   + + CP C + F+    +R H    H  
Sbjct: 72  HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG 130
Query: 165 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
           E  +KC +C K FS E   H H R H   K Y+C EC K F+  D +  H R +  K+ +
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 1/163 (0%)
Query: 338 YKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCK 397
           Y C  C K F +S    +H   H     +KC  C K++  +K+L RH  TH   + ++C 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 398 SCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK 456
            CG+ F     L  HQ  H   K + C +C +SF    HL+ H   H   K + CP+C K
Sbjct: 82  ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 457 LFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
            F  E +L  H   H   + +KC  C K F  +  L+ H   H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 2/165 (1%)
Query: 392 RSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
           + + C  CG+ F   + L  HQ  H   K +KC +C +SF +KK L +H   H   K + 
Sbjct: 20  KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 451 CPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC 510
           CP+C K F   ++L+ H   H   + + C  C K F   AHL  H   H   + + C  C
Sbjct: 80  CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 511 HLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKI 555
             +F+ +++L  H R+H      + C  CG+ F     L  H + 
Sbjct: 140 GKSFSREDNLHTHQRTHTG-EKPYKCPECGKSFSRRDALNVHQRT 183

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ +KC  C KSF   SN+++H   TH  +K YKC  C + +    +L+ H + H G K 
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 85  FTCAQCDKAFSLKSNLSKHVRHHM 108
           + C +C K+FS   +LS+H R H 
Sbjct: 61  YKCPECGKSFSRSDHLSRHQRTHQ 84

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 333 MEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRR 392
           MEK  YKC  C K F +S++  KH   H     +KC  C K++    +L +H  TH   +
Sbjct: 1   MEKP-YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 393 SFRCKSCGRRFESEELLIVHQVIHERK 419
            ++C  CG+ F   + L  HQ  H+ K
Sbjct: 60  PYKCPECGKSFSRSDHLSRHQRTHQNK 86

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN 506
           K + CP+C K F   S+LQ H   H   + +KC  C K F   + L KH   H   + + 
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 507 CDFCHLTFTTDNDLIRHMRSHE 528
           C  C  +F+  + L RH R+H+
Sbjct: 63  CPECGKSFSRSDHLSRHQRTHQ 84

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD 508
           F C  C K F+  S L  H+++H ++  + C YC K F  K+ + KH  +H   + H C 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 509 FCHLTFTTDNDLIRHMRSH 527
            C   F+  ++LI H R H
Sbjct: 62  VCGKAFSQSSNLITHSRKH 80

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 333 MEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNV 390
           ME     C +  C K+F+ +++  KH+  H   V H C  C KA+     L RH L H  
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTG 59
Query: 391 RRSFRC--KSCGRRFESEELLIVHQVIHER-KFHKCT--QCEESFKNKKHLKQHLLAHEK 445
            + F+C  + CG+RF  +  L  H  IH   + + C    C + F    +LK H+L H K
Sbjct: 60  EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 446 VK 447
            K
Sbjct: 120 AK 121

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
           +   CP   C K+FR  S ++ H+  H    VH C  C K FV  + L +H ++H   + 
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 505 HNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTC--DICGEKFINDLKLKAHI 553
             C F  C   F+ D +L  H+R H      + C  D C +KF     LK+HI
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTHVRIHTG-DRPYVCPFDGCNKKFAQSTNLKSHI 114

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F  K+N+  H+   H  QK ++C++C R +  + +L AH++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHME 109
           K F C  C + F+     ++H + H+ 
Sbjct: 61  KPFACDICGRKFATLHTRTRHTKIHLR 87

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
           C + F + T+ D H+  H      +C +C + +  + +L+ H+ TH   + F C  CGR+
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
           F +      H  IH R+
Sbjct: 72  FATLHTRTRHTKIHLRQ 88

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 447 KVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
           + + CP   C + F  +++L  H+ +H   +  +C  C + F  +A L+ H+  H   + 
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 505 HNCDFCHLTFTTDNDLIRHMRSH 527
             CD C   F T +   RH + H
Sbjct: 63  FACDICGRKFATLHTRTRHTKIH 85

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 49  ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HH 107
            +      +KC++C + +  K  LK H++ H G K + C  CD A +  S+L+KH+R H 
Sbjct: 1   GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 108 MENVKQCKICLEIFEDDEVLEEHVKSHQN 136
            E   +C+IC     +   L  H++SH  
Sbjct: 61  DERPFKCQICPYASRNSSQLTVHLRSHTG 89

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F   SN+ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
           K F C  C + F+      +H + H+  
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 90  CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
           CD+ FS  SNL++H+R H  +   QC+IC+  F   + L  H+++H   + F C  C R 
Sbjct: 12  CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 148 FTSETRMRNHIDM 160
           F      + H  +
Sbjct: 72  FARSDERKRHTKI 84

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
           C + F   ++L +H+ +H   +   C  C   F+  + L  H+R+H        CDICG 
Sbjct: 12  CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
           KF    + K H KI
Sbjct: 71  KFARSDERKRHTKI 84

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 22  SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
           S  ++ + C+ C KSF HKS   RHM+  H   + Y C +C + ++ K +L  H+K+H G
Sbjct: 5   SSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 82  PKIFTCAQCDKAFSLKSNLSKHV 104
            K + C  C K F  + +  +HV
Sbjct: 63  IKPYECNICAKRFMWRDSFHRHV 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F  K+N+  H+   H  QK ++C++C R +     L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHME 109
           K F C  C + F+      +H + H+ 
Sbjct: 61  KPFACDICGRKFATLHTRDRHTKIHLR 87

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 90  CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 147
           CD+ FS K+NL  H+R H  +   QC+IC+  F     L +H+++H   + F C  C R 
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 148 FTS 150
           F +
Sbjct: 72  FAT 74

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
           C + F + T+ D H+  H      +C +C + +     L++H+ TH   + F C  CGR+
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
           F +      H  IH R+
Sbjct: 72  FATLHTRDRHTKIHLRQ 88

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 59  CKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHM---ENVKQC 114
           C  C + +  K+ LK H + H G K F C +C K +  K NL +H  R+ M   E V  C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 115 KICLEIFEDDEVLEEHVKSHQNR-RFKCPCCERIFTSETRMRNHIDMKHADEN 166
            +C E F     L  H+ SH     +KC  C + F  +  +++H+   H+  +
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 423 CTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPK-LFRHESHLQNHV--IVHDESEVHKC 479
           C  C + F +K +LK H   H   K F CPKC K  FR E+ L++     ++   +V  C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 480 LYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM 524
             C + F  +  L  H++ H     + C  C   F    DL  HM
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F    ++ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
           K F C  C + F+      +H + H+  
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRR 402
           C + F +S S  +H+  H      +C +C + +    +L  H+ TH   + F C  CGR+
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 403 FESEELLIVHQVIHERK 419
           F   +    H  IH R+
Sbjct: 72  FARSDERKRHTKIHLRQ 88

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
           C + F     L +H+ +H   +   C  C   F+  + L  H+R+H        CDICG 
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
           KF    + K H KI
Sbjct: 71  KFARSDERKRHTKI 84

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F   +++ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
           K F C  C + F+      +H + H+  
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
           C + F   A L +H+ +H   +   C  C   F+  + L  H+R+H        CDICG 
Sbjct: 12  CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
           KF    + K H KI
Sbjct: 71  KFARSDERKRHTKI 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F   + + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
           K F C  C + F+      +H + H+  
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGE 541
           C + F   A L +H+ +H   +   C  C   F+  + L  H+R+H        CDICG 
Sbjct: 12  CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFACDICGR 70
Query: 542 KFINDLKLKAHIKI 555
           KF    + K H KI
Sbjct: 71  KFARSDERKRHTKI 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F     + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
           K F C  C + F+      +H + H+  
Sbjct: 60  KPFACDICGRKFARSDERKRHTKIHLRQ 87

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F     + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHM 108
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
           H+ P       CD+ FS    L++H+R H  +   QC+IC+  F   + L  H+++H   
Sbjct: 1   HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 138 R-FKCPCCERIFTSETRMRNHIDM 160
           + F C  C R F      + H  +
Sbjct: 61  KPFACDICGRKFARSDERKRHTKI 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F     + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHMEN 110
           K F C  C + F+      +H + H+  
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 62  CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 118
           C ++Y    +LKAHL+ H G K + C    CD  F+    L++H R H      QC +C 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 119 EIFEDDEVLEEHVKSHQN 136
             F   + L  H+K HQN
Sbjct: 83  RSFSRSDHLALHMKRHQN 100

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 444 EKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
           EK ++ +C  P C K++   SHL+ H+  H   + +KC +  C   F     L +H   H
Sbjct: 11  EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 500 ETSEMHNCDFCHLTFTTDNDLIRHMRSHE 528
             ++   C  C+ +F+  + L  HM+ H+
Sbjct: 71  TGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 386 LTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
           L    ++ F CK CGR F     L++H+  H + + + C  C ++F+ + HL+ H   H 
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESE 475
           K K F C +C K F     L  H  +H ++ 
Sbjct: 70  KEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 479 CLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTK-HTCD 537
           C  C K+F    HL++H + H   + ++C  C L F   + +  H+RSH+    K + C 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 538 ICGEKFINDLKLKAHIKIIHN 558
            CG+ F     L  HIK +H+
Sbjct: 70  SCGKGFSRPDHLNGHIKQVHS 90

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           K YKC  C   +RYK NL +H  +H G K + C  C   F+  +NL  H R H
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 24 QERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 81
          + R++KC+ C KSF H S++ +H   TH  +K YKC  C + +  + +L  H ++H G
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 52  DLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-EN 110
           D +  Y C +C R Y    +L+ H  +H   K + C  C+K F L    +KH  HH  E 
Sbjct: 18  DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 111 VKQCKICLEIFEDDEVLEEHVKS 133
             QC  C + F + + +  H+KS
Sbjct: 78  RYQCLACGKSFINYQFMSSHIKS 100

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 43  IRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKS 98
           +RRH       +K +KC    C + Y    NLK HL+ H G K + C    C KAFS  S
Sbjct: 59  MRRHTG-----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 99  NLSKHVRHHMENVKQ--CKI--CLEIFEDDEVLEEHVKS 133
           + +KH      N K   CK+  C + + D   L +HVK+
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	693
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-21
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-16
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-13
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	3e-12
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-14
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-13
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-12
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-12
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-12
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	4e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-12
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-09
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	6e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-12
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-11
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-10
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	6e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-08
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-07
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-11
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	8e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-09
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	9e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	4e-10
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	5e-10
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	7e-08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	8e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-09
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-09
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	9e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	6e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	9e-09
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	5e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-06
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	4e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	6e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	8e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	8e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-07
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	2e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	5e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	5e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	3e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	3e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	7e-05
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	3e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	6e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	3e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
1b8t_A	192	Protein (CRP1); LIM domain, muscle differentiation	4e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	5e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	5e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	5e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	5e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	6e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	8e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	9e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 89.4 bits (223), Expect = 9e-21
 Identities = 57/184 (30%), Positives = 79/184 (42%), Gaps = 4/184 (2%)

Query: 318 FRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPS 377
                   A       EK  Y C  C K F +S    +H   H     +KC  C K++  
Sbjct: 3   EFGSSSSVAQAALEPGEKP-YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61

Query: 378 EKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKH 435
           +K+L RH  TH   + ++C  CG+ F     L  HQ  H  E K + C +C +SF    H
Sbjct: 62  KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE-KPYACPECGKSFSQLAH 120

Query: 436 LKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 495
           L+ H   H   K + CP+C K F  E +L  H   H   + +KC  C K F  +  L+ H
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180

Query: 496 LILH 499
              H
Sbjct: 181 QRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 53/163 (32%), Positives = 70/163 (42%), Gaps = 2/163 (1%)

Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH 369
            C  C + F   D L  H+ +HT EK  YKC  C K F       +H   H     +KC 
Sbjct: 23  ACPECGKSFSRSDHLAEHQRTHTGEK-PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81

Query: 370 LCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCTQCEE 428
            C K++    NL  H  TH   + + C  CG+ F     L  HQ  H   K +KC +C +
Sbjct: 82  ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141

Query: 429 SFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
           SF  + +L  H   H   K + CP+C K F     L  H   H
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 347 FKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESE 406
              S+S             + C  C K++    +L  H  TH   + ++C  CG+ F  +
Sbjct: 3   EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62

Query: 407 ELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHL 464
           + L  HQ  H  E K +KC +C +SF  + +L+ H   H   K + CP+C K F   +HL
Sbjct: 63  KDLTRHQRTHTGE-KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121

Query: 465 QNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRH 523
           + H   H   + +KC  C K F  + +L  H   H T E  + C  C  +F+  + L  H
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKPYKCPECGKSFSRRDALNVH 180

Query: 524 MRSH 527
            R+H
Sbjct: 181 QRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 79.0 bits (196), Expect = 5e-17
 Identities = 59/209 (28%), Positives = 80/209 (38%), Gaps = 33/209 (15%)

Query: 36  SFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS 95
           S    S+     A     +K Y C  C + +    +L  H + H G K + C +C K+FS
Sbjct: 2   SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60

Query: 96  LKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRM 154
            K +L++H R H  E   +C  C + F     L  H              +R        
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH--------------QRT------- 99

Query: 155 RNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQH 212
                  H  E  + C +C K FS       H R H   K Y+C EC K F+ ED +  H
Sbjct: 100 -------HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152

Query: 213 FRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
            R  H  E  Y C  C  SF  +  L  H
Sbjct: 153 QR-THTGEKPYKCPECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 75.9 bits (188), Expect = 5e-16
 Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 36/195 (18%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ + C  C KSF    ++  H   TH  +K YKC  C + +  K +L  H + H G K 
Sbjct: 19  EKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 85  FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 143
           + C +C K+FS ++NL  H R H  E                           + + CP 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGE---------------------------KPYACPE 110

Query: 144 CERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSEC 199
           C + F+    +R H      H  E  +KC +C K FS E   H H R H   K Y+C EC
Sbjct: 111 CGKSFSQLAHLRAHQRT---HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

Query: 200 EKRFATEDIMRQHFR 214
            K F+  D +  H R
Sbjct: 168 GKSFSRRDALNVHQR 182

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 409 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 466
            +    +   E K + C +C +SF    HL +H   H   K + CP+C K F  +  L  
Sbjct: 9   SVAQAALEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR 67

Query: 467 HVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMR 525
           H   H   + +KC  C K F  +A+L  H   H T E  + C  C  +F+    L  H R
Sbjct: 68  HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKPYACPECGKSFSQLAHLRAHQR 126

Query: 526 SHEEYHTK---HTCDICGEKFINDLKLKAHIKIIHNL---FTCIHCG 566
           +    HT    + C  CG+ F  +  L  H +  H     + C  CG
Sbjct: 127 T----HTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECG 168

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 30/167 (17%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           E+ +KC  C KSF  K ++ RH   TH  +K YKC  C + +  + NL+AH + H G K 
Sbjct: 47  EKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105

Query: 85  FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 143
           + C +C K+FS  ++L  H R H  E   +C  C + F  ++ L  H             
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH------------- 152

Query: 144 CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
            +R               H  E  +KC +C K FS     ++H R H
Sbjct: 153 -QRT--------------HTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 60.5 bits (148), Expect = 9e-11
 Identities = 59/199 (29%), Positives = 77/199 (38%), Gaps = 38/199 (19%)

Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
              E  + C +C K FS       H R H   K Y+C EC K F+ +  + +H R  H  
Sbjct: 16  EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG 74

Query: 220 EDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFTCPF 277
           E  Y C  C  SF  ++ L  H   H G  PY C  C   F    +LR H          
Sbjct: 75  EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH---------- 124

Query: 278 CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTL 337
            QR +  EK  +                     C  C + F  ED L  H+ +HT EK  
Sbjct: 125 -QRTHTGEKPYK---------------------CPECGKSFSREDNLHTHQRTHTGEKP- 161

Query: 338 YKCLYCHKVFKKSTSFDKH 356
           YKC  C K F +  + + H
Sbjct: 162 YKCPECGKSFSRRDALNVH 180

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 68.6 bits (169), Expect = 1e-14
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
               KCE+C K F  K  ++ HM   H   K YKCK C        +L  HL++H   + 
Sbjct: 6   SGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64

Query: 85  FTCAQCDKAFSLKSNLSKHVRHH 107
           F C  C  A    S L+ H+R H
Sbjct: 65  FKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
           +       +C+ CG+ F  ++ L  H   H    K +KC  C+ +  +   L +HL  H 
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV-KPYKCKTCDYAAADSSSLNKHLRIHS 60

Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVH 471
             + F C  CP   R+ S L  H+  H
Sbjct: 61  DERPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 52.4 bits (127), Expect = 8e-09
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 50  THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM- 108
           +      +KC++C + +  K  LK H++ H G K + C  CD A +  S+L+KH+R H  
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

Query: 109 ENVKQCKICLEIFEDDEVLEEHVKSH 134
           E   +C+IC     +   L  H++SH
Sbjct: 62  ERPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 330 SHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHN 389
           S       +KC  C K F +      HM  H     +KC  C  A     +L++HL  H+
Sbjct: 2   SSGSSGP-HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60

Query: 390 VRRSFRCKSCGRRFESEELLIVHQVIH 416
             R F+C+ C     +   L VH   H
Sbjct: 61  DERPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
                  KC+ C K FS + K   H R H   K Y+C  C+   A    + +H R  H+ 
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSD 61

Query: 220 EDAYVCNYCYDSFETKSTLVDH 241
           E  + C  C  +    S L  H
Sbjct: 62  ERPFKCQICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           + +KC+ C  +    S++ +H+   H  ++ +KC++C    R    L  HL+ H G   
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92

Query: 85 FTCA 88
           +  
Sbjct: 93 PSSG 96

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 25  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           ER + C  E C + F    ++ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHH 107
           K F C  C + F+      +H + H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 394 FRCKS--CGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 449
           + C    C RRF     L  H  IH  + K  +C  C  +F    HL  H+  H   K F
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQ-KPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63

Query: 450 HCPKCPKLFRHESHLQNHVIVH 471
            C  C + F      + H  +H
Sbjct: 64  ACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 447 KVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM 504
           + + CP   C + F     L  H+ +H   +  +C  C + F    HL  H+  H T E 
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGEK 61

Query: 505 -HNCDFCHLTFTTDNDLIRHMRSH 527
              CD C   F   ++  RH + H
Sbjct: 62  PFACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
          ++ F+C +C ++F    ++  H+  TH  +K + C +C R +      K H K+H   K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTK 373
           C R F     LT H   HT +K  ++C  C + F +S     H+  H       C +C +
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70

Query: 374 AYPSEKNLDRHLLTH 388
            +       RH   H
Sbjct: 71  KFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.8 bits (89), Expect = 9e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 139 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFY 194
           + CP   C+R F+    +  HI   H  +  F+C+ C++ FS       H R H   K +
Sbjct: 5   YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63

Query: 195 RCSECEKRFATEDIMRQHFR 214
            C  C ++FA  D  ++H +
Sbjct: 64  ACDICGRKFARSDERKRHTK 83

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHM--AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           E+ F+C  C K +  K N+  H      +  ++ + C +C   +R +  L+ H+  H G 
Sbjct: 33  EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92

Query: 83  KIFTCAQCDKAFSLKSNLSKH 103
             + C+ C + F  K +L  H
Sbjct: 93  MPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 65.2 bits (160), Expect = 5e-13
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAH---LKMHKG 81
               +C  C K F  K  ++ H    H  +K ++C  C + Y  K NL  H     M++ 
Sbjct: 5   SSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63

Query: 82  PKIFTCAQCDKAFSLKSNLSKHVRHH 107
            ++FTC+ C + F  +  L  H+  H
Sbjct: 64  EQVFTCSVCQETFRRRMELRLHMVSH 89

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 64.4 bits (158), Expect = 1e-12
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 394 FRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH---LLAHEKVKV 448
             C +C ++F S+  L VH   H  E K  +C +C + +  K++L +H      +   +V
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGE-KPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66

Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH 495
           F C  C + FR    L+ H++ H     +KC  C + F+ K  L  H
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRH---LLT 387
            +      +C  CHK F        H   H      +C  C K Y  ++NL  H      
Sbjct: 2   SSGSSG-VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60

Query: 388 HNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH 439
           +   + F C  C   F     L +H V H  E   +KC+ C + F  KK L+ H
Sbjct: 61  NRSEQVFTCSVCQETFRRRMELRLHMVSHTGE-MPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM----EN 110
              +C  C + +  K+ LK H + H G K F C +C K +  K NL +H   +     E 
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65

Query: 111 VKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH 157
           V  C +C E F     L  H+ SH     +KC  C + F  +  +++H
Sbjct: 66  VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 32/139 (23%)

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
             G     C  C K F  K  L  H R H  E                           +
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---------------------------K 34

Query: 138 RFKCPCCERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KF 193
            F+CP C + +  +  +  H   +  +  E +F C  C + F   ++  LH  +H     
Sbjct: 35  PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94

Query: 194 YRCSECEKRFATEDIMRQH 212
           Y+CS C ++F  +  ++ H
Sbjct: 95  YKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA-----KF 193
            +CP C + F S+  ++ H + KH  E  F+C KC K +  +     H   +      + 
Sbjct: 8   VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66

Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
           + CS C++ F     +R H  + H  E  Y C+ C   F  K  L  H
Sbjct: 67  FTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHET 501
                    CP C K F  + +L+ H   H   +  +C  C K +  K +L +H      
Sbjct: 1   GSSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EAR 57

Query: 502 SEMH------NCDFCHLTFTTDNDLIRHMRSHEEYHTK---HTCDICGEKFINDLKLKAH 552
           + M+       C  C  TF    +L  HM S    HT    + C  C ++F+    L++H
Sbjct: 58  NCMNRSEQVFTCSVCQETFRRRMELRLHMVS----HTGEMPYKCSSCSQQFMQKKDLQSH 113

Query: 553 IKIIH 557
           +  +H
Sbjct: 114 MIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 38/146 (26%)

Query: 217 HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSCFT 274
            +      C  C+  F +K  L  H   H G  P+ C  C   +  ++NL  H       
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH------- 54

Query: 275 CPFCQRKYKI---EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH 331
               + +  +   E+                        C  CQ  FR   +L  H +SH
Sbjct: 55  ----EARNCMNRSEQVFT---------------------CSVCQETFRRRMELRLHMVSH 89

Query: 332 TMEKTLYKCLYCHKVFKKSTSFDKHM 357
           T E   YKC  C + F +      HM
Sbjct: 90  TGEMP-YKCSSCSQQFMQKKDLQSHM 114

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 16/96 (16%)

Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH----FFHHG- 246
               C  C K+F ++  ++ H R  H  E  + C  C   +  K  L++H      +   
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64

Query: 247 NPYMCNHCFLMFPDEKNLRNH----------ECTSC 272
             + C+ C   F     LR H          +C+SC
Sbjct: 65  QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           +++F C+ C + F    N+  H   TH  ++ Y C +C + +R + +L+ H  +H   K 
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73

Query: 85  FTCAQCDKAFSLKSNLSKHVRHHM 108
           F C +C K F     L+ H   HM
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHM 97

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 59.0 bits (144), Expect = 4e-11
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 437
                 L    ++ F CK CGR F     L++H+  H  E + + C  C ++F+ + HL+
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE-RPYTCDICHKAFRRQDHLR 62

Query: 438 QHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
            H   H K K F C +C K F     L  H  +H
Sbjct: 63  DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 52.8 bits (128), Expect = 8e-09
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDR 383
            +   L    +K  + C +C + F KS +   H   H     + C +C KA+  + +L  
Sbjct: 5   SSGGRLPSKTKK-EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63

Query: 384 HLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-ERKFHKCT 424
           H   H+  + F+C+ CG+ F     L VH+ +H +       
Sbjct: 64  HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 50.9 bits (123), Expect = 4e-08
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 40  KSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSN 99
            S            +K++ CK C R +   +NL  H + H   + +TC  C KAF  + +
Sbjct: 2   SSGSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60

Query: 100 LSKHVRHH 107
           L  H   H
Sbjct: 61  LRDHRYIH 68

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
              +  F CK C + F+      +H R H   + Y C  C K F  +D +R H    H+K
Sbjct: 12  SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSK 70

Query: 220 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 252
           E  + C  C   F    TL  H   H   +     
Sbjct: 71  EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 2/94 (2%)

Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
                 L  +  K F C  C + F    +L  H   H +   + C  C K F  + HL  
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63

Query: 495 HLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSH 527
           H  +H + E    C  C   F     L  H   H
Sbjct: 64  HRYIH-SKEKPFKCQECGKGFCQSRTLAVHKTLH 96

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 27/158 (17%), Positives = 38/158 (24%), Gaps = 58/158 (36%)

Query: 71  NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 130
                    K  K F C  C + F+   NL                              
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLI---------------------------- 35

Query: 131 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 190
              H+          R               H DE  + C  C K F  +     H   H
Sbjct: 36  ---HE----------RT--------------HTDERPYTCDICHKAFRRQDHLRDHRYIH 68

Query: 191 A--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
           +  K ++C EC K F     +  H    H +  +    
Sbjct: 69  SKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTAA 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           ER + C++C K+F  + ++R H    H  +K +KC+ C + +     L  H  +H     
Sbjct: 43  ERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101

Query: 85  FTC 87
            T 
Sbjct: 102 PTA 104

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 28  FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
           F C++C KSF   S +  H+   H   + Y C+ C + +  K ++K H  +H G K   C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60

Query: 88  AQCDKAFSLKSNLSKHVRHH 107
             C KAFS  SNL  H R H
Sbjct: 61  QVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 393 SFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
           SF CK CG+ F+    L  H +IH   R +  C  C + F  K  +K+H   H   K   
Sbjct: 1   SFDCKICGKSFKRSSTLSTHLLIHSDTRPY-PCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59

Query: 451 CPKCPKLFRHESHLQNHVIVH 471
           C  C K F   S+L  H   H
Sbjct: 60  CQVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM-HNC 507
           F C  C K F+  S L  H+++H ++  + C YC K F  K+ + KH  +H T E  H C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHKC 60

Query: 508 DFCHLTFTTDNDLIRHMRSH 527
             C   F+  ++LI H R H
Sbjct: 61  QVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
           F CK C K F        H   H+  + Y C  C KRF  +  M++H    H  E  + C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60

Query: 226 NYCYDSFETKSTLVDH 241
             C  +F   S L+ H
Sbjct: 61  QVCGKAFSQSSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH 369
            C+ C + F+    L+ H L H+  +  Y C YC K F + +   KH   H     HKC 
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 370 LCTKAYPSEKNLDRHLLTH 388
           +C KA+    NL  H   H
Sbjct: 62  VCGKAFSQSSNLITHSRKH 80

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH--ERKFHKCTQ- 425
           C  AY     L  HL  H   + F CK   C + F S   L  H + H  E K   C   
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE-KNFTCDSD 78

Query: 426 -CEESFKNKKHLKQHLLAH--EKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKC- 479
            C+  F  K ++K+H       K+ V+ C    C K F+  + L+ H   H +   ++C 
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138

Query: 480 -LYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM-RSHEE 529
              C K F   + L +H  +H        D C     T    ++H+   H++
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 14/183 (7%)

Query: 326 AHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCH--LCTKAYPSEKNL 381
             +    + K  Y C +  C   + K+     H+  H       C    C K + S  +L
Sbjct: 2   GEKALPVVYKR-YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60

Query: 382 DRHLLTHNVRRSFRCK--SCGRRFESEELLIVHQVIH--ERKF-HKCT--QCEESFKNKK 434
            RH LTH   ++F C    C  RF ++  +  H       +   + C    C ++FK   
Sbjct: 61  TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120

Query: 435 HLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
            LK H  +H +   + C    C K F   S L+ H  VH      K   C  V       
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180

Query: 493 DKH 495
            KH
Sbjct: 181 LKH 183

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 40/207 (19%)

Query: 25  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 80
            +++ C    C  +++    ++ H+   H  +K + CK   C + +    +L  H   H 
Sbjct: 10  YKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68

Query: 81  GPKIFTCAQ--CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 137
           G K FTC    CD  F+ K+N+ KH    H   +                          
Sbjct: 69  GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV------------------------ 104

Query: 138 RFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAH--A 191
            + C    C + F    +++ H    H  +  ++C    C K FS   +   H + H   
Sbjct: 105 -YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162

Query: 192 KFYRCSECEKRFATEDIMRQHFRNYHN 218
              +   C     T  +  +H    H 
Sbjct: 163 PCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKC--LYCHKVFKKSTSFDKHMEHHNRNVLHKC--H 369
           C   +    KL AH   HT EK  + C    C K F       +H   H       C   
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78

Query: 370 LCTKAYPSEKNLDRHLLTH--NVRRSFRC--KSCGRRFESEELLIVHQVIH-ERKFHKCT 424
            C   + ++ N+ +H           + C  ++CG+ F+    L VHQ  H ++  ++C 
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138

Query: 425 Q--CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV-IVHDE 473
              C++ F     LK+H   H          C  + +  +    HV   H +
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 16/183 (8%)

Query: 74  AHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLE 128
               +    K + C  A C  A++    L  H+  H  E    CK   C + F     L 
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 129 EHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDMKHADENL-FKC--KKCLKVFSDEIK 182
            H  +H   + F C    C+  FT++  M+ H +  H  +   + C  + C K F    +
Sbjct: 62  RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121

Query: 183 FHLHGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL 238
             +H  +H     Y C    C+KRF+    +++H +  H        + C    +T +  
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLY 180

Query: 239 VDH 241
           + H
Sbjct: 181 LKH 183

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 62.1 bits (152), Expect = 3e-12
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG--P 82
                CE+C K F    ++ RH   +H  +K Y C +C   ++ K  +  H++ H G   
Sbjct: 5   SSGVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63

Query: 83  KIFTCAQCDKAFSLKSNLSKHVR 105
           K + C  C K FS   +L+ H++
Sbjct: 64  KPYICQSCGKGFSRPDHLNGHIK 86

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEV-- 476
               C  C + F++  HL +H L+H   K + CP C   F+ +  +  HV  HD S    
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 477 HKCLYCFKVFVHKAHLDKHL 496
           + C  C K F    HL+ H+
Sbjct: 66  YICQSCGKGFSRPDHLNGHI 85

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH---ERKFHK 422
             C +C K +    +L+RH L+H+  + + C  CG RF+ ++ +  H   H     K + 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 423 CTQCEESFKNKKHLKQHL 440
           C  C + F    HL  H+
Sbjct: 68  CQSCGKGFSRPDHLNGHI 85

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVK- 112
               C++C +++R  ++L  H   H G K ++C  C   F  K  +S HVR H     K 
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 113 -QCKICLEIFEDDEVLEEHVK 132
             C+ C + F   + L  H+K
Sbjct: 66  YICQSCGKGFSRPDHLNGHIK 86

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.6 bits (104), Expect = 8e-06
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHE-EYHTKH 534
             C  C K+F    HL++H + H + E  ++C  C L F   + +  H+RSH+      +
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66

Query: 535 TCDICGEKFINDLKLKAHIKIIH 557
            C  CG+ F     L  HIK +H
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH-- 499
                    C  C K+FR   HL  H + H   + + C  C   F  K  +  H+  H  
Sbjct: 1   GSSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60

Query: 500 ETSEMHNCDFCHLTFTTDNDLIRHMR 525
              + + C  C   F+  + L  H++
Sbjct: 61  SVGKPYICQSCGKGFSRPDHLNGHIK 86

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 162 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 219
            +  +   C+ C K+F D    + H  +H+  K Y C  C  RF  +D M  H R+ H+ 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDG 60

Query: 220 EDA--YVCNYCYDSFETKSTLVDH 241
                Y+C  C   F     L  H
Sbjct: 61  SVGKPYICQSCGKGFSRPDHLNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.9 bits (97), Expect = 9e-05
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH--- 134
             G     C  C K F    +L++H   H  E    C +C   F+  + +  HV+SH   
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 135 QNRRFKCPCCERIFTSETRMRNHIDMKH 162
             + + C  C + F+    +  HI   H
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVL--HK 367
            C  C ++FR+   L  H+LSH+ EK  Y C  C   FK+      H+  H+ +V   + 
Sbjct: 9   ACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 368 CHLCTKAYPSEKNLDRHL 385
           C  C K +    +L+ H+
Sbjct: 68  CQSCGKGFSRPDHLNGHI 85

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH----AKFY 194
             C  C +IF     +  H  + H+ E  + C  C   F  + +   H R+H     K Y
Sbjct: 8   VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66

Query: 195 RCSECEKRFATEDIMRQHFRNYH 217
            C  C K F+  D +  H +  H
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVH 89

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 62.5 bits (153), Expect = 4e-12
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 23  IQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
           ++ R   C    C K F   S +R+H+  TH   + + C  C + +     LK H  +H 
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHL-HTHG-PRVHVCAECGKAFVESSKLKRHQLVHT 58

Query: 81  GPKIFTCA--QCDKAFSLKSNLSKHVRHH 107
           G K F C    C K FSL  NL  HVR H
Sbjct: 59  GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 396 CKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK-- 453
            K C + F     +  H   H  + H C +C ++F     LK+H L H   K F C    
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69

Query: 454 CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
           C K F  + +L+ HV +H     + C +  C K F    +L  H++ H
Sbjct: 70  CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 82
            R   C  C K+F   S ++RH    H  +K ++C    C + +   +NL+ H+++H G 
Sbjct: 32  PRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90

Query: 83  KIFTCA--QCDKAFSLKSNLSKHVRHH 107
           + + C    C+K F+  +NL  H+  H
Sbjct: 91  RPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--C 371
           C +MFR+   +  H  +H   + ++ C  C K F +S+   +H   H      +C    C
Sbjct: 13  CTKMFRDNSAMRKHLHTHG-PR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70

Query: 372 TKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIH 416
            K +  + NL  H+  H   R + C    C ++F     L  H + H
Sbjct: 71  GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 28  FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 87
           F+C +C ++F    ++  H+  TH  +K + C +C R +      K H  +         
Sbjct: 4   FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61

Query: 88  AQCDKAFSLKSNLSKHVRHH 107
            + ++  S   +L   V   
Sbjct: 62  DKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 52.5 bits (127), Expect = 7e-09
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQC 114
           K ++C++C R +    +L  H++ H G K F C  C + F+      +H           
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61

Query: 115 KICLEIFEDDEVLEEHVK 132
               E+   +  LE  V 
Sbjct: 62  DKVEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 18/74 (24%), Positives = 30/74 (40%)

Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQ 425
            +C +C + +    +L  H+ TH   + F C  CGR+F   +    H+ I         +
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63

Query: 426 CEESFKNKKHLKQH 439
            EE      HL+  
Sbjct: 64  VEELLSKNYHLENE 77

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 225
           F+C+ C++ FS       H R H   K + C  C ++FA  D  ++H    H      + 
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILE 61

Query: 226 NYCYDSFETKSTLVDHFFHH 245
           +   +       L +     
Sbjct: 62  DKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 9/97 (9%)

Query: 446 VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMH 505
           +K F C  C + F    HL  H+  H   +   C  C + F       +H  +       
Sbjct: 1   MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59

Query: 506 NCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEK 542
             D      + +  L   +    +          GE+
Sbjct: 60  LEDKVEELLSKNYHLENEVA-RLKKLV-------GER 88

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHT 535
            +C  C + F    HL  H+  H T E    CD C   F   ++  RH            
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI--LPIL 60

Query: 536 CDICGEKFINDLKLKAHIK 554
            D   E    +  L+  + 
Sbjct: 61  EDKVEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 194 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGNPYMCN 252
           ++C  C + F+  D +  H R  H  E  + C+ C   F        H    H  P + +
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62

Query: 253 HCFLMFPDEKNLRNH 267
               +     +L N 
Sbjct: 63  KVEELLSKNYHLENE 77

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
           ++ + C+ C KSF HKS   RHM+  H   + Y C +C + ++ K +L  H+K+H G K 
Sbjct: 8   DKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65

Query: 85  FTCAQCDKAFSLKSNLSKHVRHHMENVKQCKIC 117
           + C  C K F  + +  +HV        +    
Sbjct: 66  YECNICAKRFMWRDSFHRHV-TSCTKSYEAAKA 97

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 56.3 bits (137), Expect = 5e-10
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 84
            R + C +C K F  K ++  HM   H   K Y+C +CA+ + ++ +   H  +    K 
Sbjct: 35  LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKS 91

Query: 85  FTCAQCDKAFSLKSNLS 101
           +  A+ ++  +  S  S
Sbjct: 92  YEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 53.6 bits (130), Expect = 5e-09
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 367 KCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQ 425
            C  C K++  +   DRH+  H   R + C  CG++F+ +  L+ H  IH   K ++C  
Sbjct: 12  PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70

Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 466
           C + F  +    +H+      K +   K  +     S   +
Sbjct: 71  CAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
             +  + + C+ CG+ F  +     H  +H    + + C  C + FK K HL  H+  H 
Sbjct: 4   GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGHMKIHT 61

Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHL 492
            +K + C  C K F        HV     ++ ++     +     +  
Sbjct: 62  GIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 422 KCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY 481
            C QC +SF +K    +H+  H  ++ + C  C K F+ + HL  H+ +H   + ++C  
Sbjct: 12  PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70

Query: 482 CFKVFVHKAHLDKH 495
           C K F+ +    +H
Sbjct: 71  CAKRFMWRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTK 373
           C + F ++ +   H   H   +  Y C  C K FK       HM+ H     ++C++C K
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73

Query: 374 AYPSEKNLDRHLLTHNVRRSFRCKSCGRRF 403
            +    +  RH    +  +S+      +  
Sbjct: 74  RFMWRDSFHRH--VTSCTKSYEAAKAEQNT 101

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 371 CTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH----------ERKF 420
              +    K           + S   KSC R F +   L+ H  +              +
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHK 478
            +C +  +SFK K  L  H+  H   K F C  P C K+F    +L+ H   H   +  K
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122

Query: 479 CLY--CFKVFVHKAHLDKHLILH 499
           C +  C + F + +   KH+ +H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 16/145 (11%)

Query: 398 SCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQHLLAH---------EKVK 447
           S G   +  +  +  + I E         C+ +F     L  H+                
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 448 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEM- 504
              CP+  K F+ +  L NH+ VH   +   C +  C K+F    +L  H   H T E  
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH-TGEKP 120

Query: 505 HNCDF--CHLTFTTDNDLIRHMRSH 527
             C+F  C   F   +D  +HM  H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 345 KVFKKSTSFDKHMEH---HNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFR------ 395
                     + +         +      C + + +   L  H+   +V    +      
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 396 ---CKSCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKV 448
              C   G+ F+++  L+ H  +H  E K   C    C + F   ++LK H   H   K 
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGE-KPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120

Query: 449 FHC--PKCPKLFRHESHLQNHVIVH 471
           F C    C + F + S  + H+ VH
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 29  KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFT 86
           +C    KSF  K  +  H+   H  +K + C    C +++    NLK H + H G K F 
Sbjct: 64  ECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122

Query: 87  CA--QCDKAFSLKSNLSKHVRHH 107
           C    CD+ F+  S+  KH+  H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 17/153 (11%)

Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHH---------NRNV 364
                +   +  + +     + +      C + F        H+            +   
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLS-RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 365 LHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIH--ERKF 420
             +C    K++ ++  L  H+  H   + F C    CG+ F   E L +H+  H  E+ F
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121

Query: 421 HKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC 451
            KC    C+  F N    K+H+  H   K    
Sbjct: 122 -KCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 27/159 (16%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKS 133
              + +         CD+ FS    L  HV   H+   +Q        E           
Sbjct: 16  CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE----------- 64

Query: 134 HQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA 191
                  CP   + F ++ ++ NHI   H  E  F C    C K+F+      +H R H 
Sbjct: 65  -------CPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116

Query: 192 --KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCN 226
             K ++C    C++RFA     ++H    H  + +   +
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 32/147 (21%), Positives = 44/147 (29%), Gaps = 22/147 (14%)

Query: 426 CEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH---------DESEV 476
              S +  K         E         C + F     L  HV +               
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSHEEYHTK 533
            +C    K F  K  L  H+ +H T E    C F  C   F    +L  H R+    HT 
Sbjct: 63  EECPREGKSFKAKYKLVNHIRVH-TGEKPFPCPFPGCGKIFARSENLKIHKRT----HTG 117

Query: 534 ---HTCDI--CGEKFINDLKLKAHIKI 555
                C+   C  +F N    K H+ +
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHV 144

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 35  KSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT------ 86
            S      I++ ++     + Q     K C R +     L  H+ M              
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 87  ---CAQCDKAFSLKSNLSKHVRHH 107
              C +  K+F  K  L  H+R H
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVH 85

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 33/176 (18%)

Query: 230 DSFETKSTLVDHFFHH-----GNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKI 284
            S  +   +                    C   F     L  H                +
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTH-----------VTMEHV 50

Query: 285 EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY-- 342
                               +   ++C    + F+ + KL  H   HT EK  + C +  
Sbjct: 51  GGP------------EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPG 97

Query: 343 CHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC 396
           C K+F +S +   H   H      KC    C + + +  +  +H+  H   +S   
Sbjct: 98  CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 25  ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 80
           +R F C    C K +   S+++ H    H  +K Y+C    C R +     LK H + H 
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62

Query: 81  GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           G K F C  C + FS   +L  H R H
Sbjct: 63  GVKPFQCKTCQRKFSRSDHLKTHTRTH 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 25  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           E+ ++C+   C + F     ++RH    H   K ++CK C R +    +LK H + H G 
Sbjct: 34  EKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92

Query: 83  KIFTC--AQCDKAFSLKSNLSKHVRHH 107
           K F+C    C K F+    L +H   H
Sbjct: 93  KPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 394 FRCK--SCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHEKVK 447
           F C    C +R+     L +H   H  E K ++C    CE  F     LK+H   H  VK
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGE-KPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65

Query: 448 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILH 499
            F C  C + F    HL+ H   H   +   C +  C K F     L +H  +H
Sbjct: 66  PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 421 HKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEV 476
             C    C + +    HL+ H   H   K + C    C + F     L+ H   H   + 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66

Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHMRSH 527
            +C  C + F    HL  H   H T E   +C +  C   F   ++L+RH   H
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 314 CQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHMEHHNRNVLHKCHLC 371
           C + +     L  H   HT EK  Y+C +  C + F +S    +H   H      +C  C
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEK-PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTC 72

Query: 372 TKAYPSEKNLDRHLLTHNVRRSFRCKS--CGRRFESEELLIVHQVIH 416
            + +    +L  H  TH   + F C+   C ++F   + L+ H  +H
Sbjct: 73  QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 63/168 (37%)

Query: 55  KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMEN 110
           + + C    C + Y    +L+ H + H G K + C    C++ FS    L          
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL---------- 54

Query: 111 VKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC 170
                                K HQ          R               H     F+C
Sbjct: 55  ---------------------KRHQ----------RR--------------HTGVKPFQC 69

Query: 171 KKCLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFR 214
           K C + FS       H R H   K + C    C+K+FA  D + +H  
Sbjct: 70  KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMH---KGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 110
              +C++C    R K +L  H + H        F C  C K F    +++ H    H   
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 111 VKQCK 115
           +   +
Sbjct: 66  LLAPQ 70

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ---KKYKCKLCARMYRYKWNLKAHLKMHKG 81
              +CE+C  +   K+++  H    H       ++ C+ C + +    ++ AH      
Sbjct: 5  SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63

Query: 82 PKIFTCAQCDKAFS 95
            +    +     S
Sbjct: 64 ALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 394 FRCKSCGRRFESEELLIVHQVIHER----KFHKCTQCEESFKNKKHLKQHLLAHEKVKVF 449
            +C+ CG     +  L  HQ  H          C  C + F+    +  H        + 
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 450 HCPKCPK 456
              +   
Sbjct: 68  APQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 421 HKCTQCEESFKNKKHLKQHLLAH---EKVKVFHCPKCPKLFRHESHLQNHVIVH 471
            +C  C  + + K  L  H   H        F C  C K F     +  H    
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 477 HKCLYCFKVFVHKAHLDKHLILHETSEMHN---CDFCHLTFTTDNDLIRHMRSHEEYHTK 533
            +C  C      KA L+ H   H  +       C+FC   F   + +  H          
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 534 HTCDICG 540
              +  G
Sbjct: 68  APQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK----QCKICLEIFEDDEVLEEHVKSH 134
             G     C  C      K++L+ H R H E V      C+ C + FE  + +  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 135 QNRRFKCPCC 144
                  P  
Sbjct: 62  HPALLLAPQE 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 505 HNCDFCHLTFTTDNDLIRHMRSH--EEYHTKHTCDICGEKFINDLKLKAHIKIIH 557
             C+ C  T      L  H R H       +  C+ CG++F     + AH    H
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 4/77 (5%)

Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHK---CHLCTKAYPSEKNLDRHLLT 387
            +      +C  C    ++  S + H   H   V      C  C K +    ++  H   
Sbjct: 2   SSGSSG-LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

Query: 388 HNVRRSFRCKSCGRRFE 404
            +       +       
Sbjct: 61  SHPALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 449 FHCPKCPKLFRHESHLQNHVIVHDESEVHK---CLYCFKVFVHKAHLDKHLILHETSEMH 505
             C  C    R ++ L  H   H E+       C +C K F     +  H      + + 
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 506 NC 507
             
Sbjct: 68  AP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 310 KCRYCQRMFRNEDKLTAHELSHTMEKTL--YKCLYCHKVFKKSTSFDKHMEHHNRNVLHK 367
           +C  C    R +  L  H+  H        + C +C K F+K  S   H    +  +L  
Sbjct: 9   QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68

Query: 368 CHLCTK 373
               + 
Sbjct: 69  PQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 366 HKCHLCTKAYPSEKNLDRHLLTHNVR---RSFRCKSCGRRFESEELLIVHQVIH 416
            +C +C      + +L+ H   H        F C+ CG+RFE  + +  H+   
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 168 FKCKKCLKVFSDEIKFHLHGRAHA-----KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 222
            +C+ C      +   + H R HA       + C  C KRF   D +  H    H     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 223 YVCNYC 228
                 
Sbjct: 68  APQESS 73

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 49  ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           ++       KC  C+     K  L+ H ++H   + F C  C       SNLSKH++  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
            KC++C  S  +K  L+ H   H   + F C  C    +  S+L  H+   
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 394 FRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH 443
            +C  C     S+  L +H+ IH  +R F KC  C    K   +L +H+   
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPF-KCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 187 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 241
           G + +     +CSEC    +++  +R H R  H  +  + CNYC    +  S L  H
Sbjct: 1   GSSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKH 56

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
               C +C      ++ L+ H  +H      KC YC       ++L KH+   
Sbjct: 8   HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYK-----WNLKAHLK 77
           E   + + C + FD +  +  H+ +   H  +K++ C         +     + L  H++
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 78  MHKGPKIFTC--AQCDKAFSLKSNLSKHVRHH 107
            H G K   C    C K++S   NL  H+R H
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 338 YKCLYCHKVFKKSTSFDKHMEH---HNRNVLHKCHLC-----TKAYPSEKNLDRHLLTHN 389
            +   C + F        H+     H       CH        + + ++  L  H+  H 
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 390 VRRSFRCKS--CGRRFESEELLIVHQVIH--ERKFHKCTQ--CEESFKNKKHLKQHLL-A 442
             +  +C    C + +   E L  H   H  E+ +  C    C ++F N     +H    
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY-MCEHEGCSKAFSNASDRAKHQNRT 122

Query: 443 HEKVKVFHC--PKCPKLFRHESHLQNHVIVH 471
           H   K + C  P C K +   S L+ HV   
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 16/150 (10%)

Query: 394 FRCKSCGRRFESEELLIVH---QVIH-ERKFHKCTQCE-----ESFKNKKHLKQHLLAHE 444
            R   C + F+S+E L+ H   + IH ERK   C           FK +  L  H+  H 
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 445 KVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHLILHE 500
             K   C    C K +    +L+ H+  H   + + C    C K F + +   KH     
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

Query: 501 TSEM-HNCDF--CHLTFTTDNDLIRHMRSH 527
           ++E  + C    C   +T  + L +H+++ 
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 30  CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC 87
           C    + F  +  +  HM   H  +K +KC    C + Y    NLK HL+ H G K + C
Sbjct: 42  CSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100

Query: 88  AQ--CDKAFSLKSNLSKHVR--HHMENVKQCKI--CLEIFEDDEVLEEHVKSH 134
               C KAFS  S+ +KH    H  E    CK+  C + + D   L +HVK+ 
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 35/171 (20%)

Query: 83  KIFTCAQCDKAFSLKSNLSKHVR----HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR 138
                  C + F  +  L  H+     H       C                        
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG--------------------- 40

Query: 139 FKCPCCERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--KFY 194
             C    R F ++  +  H+  +H  E   KC    C K +S       H R+H   K Y
Sbjct: 41  -GCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98

Query: 195 RCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 241
            C    C K F+      +H    H+ E  YVC    C   +   S+L  H
Sbjct: 99  MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 422 KCTQCEESFKNKKHLKQHLLA---HEKVKVFHC-----PKCPKLFRHESHLQNHVIVHDE 473
           +   C + F +++ L  H+ +   H + K F C      +  + F+ +  L  H+  H  
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64

Query: 474 SEVHKCLY--CFKVFVHKAHLDKHLILHETSEM-HNCDF--CHLTFTTDNDLIRHM-RSH 527
            + HKC +  C K +    +L  HL  H T E  + C+   C   F+  +D  +H  R+H
Sbjct: 65  EKPHKCTFEGCRKSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

Query: 528 EEYHTK-HTCDI--CGEKFINDLKLKAHIKI 555
              + K + C +  C +++ +   L+ H+K 
Sbjct: 124 --SNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 447 KVFHCPKCPKLFRHESHLQNHVI---VHDESEVHKCLYC-----FKVFVHKAHLDKHLIL 498
                  C + F  +  L +H+    +H E +   C +       + F  +  L  H+  
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61

Query: 499 HETSEM-HNCDF--CHLTFTTDNDLIRHMRSH--------EEYHTKHTCDICGEKFINDL 547
           H T E  H C F  C  +++   +L  H+RSH        E        + C + F N  
Sbjct: 62  H-TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH-------EGCSKAFSNAS 113

Query: 548 KLKAHIKIIH 557
               H    H
Sbjct: 114 DRAKHQNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 28/85 (32%)

Query: 25  ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 82
           E+ + CE   C K+F + S+  +H   TH  +K Y CK                      
Sbjct: 95  EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK---------------------- 132

Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHH 107
                  C K ++  S+L KHV+  
Sbjct: 133 ----LPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 46/183 (25%)

Query: 248 PYMCNHCFLMFPDEKNLRNHECTSC-------FTCPFCQRKYKIEKHLEKHIESCIQLNP 300
               + C   F  ++ L +H  +         F C +                       
Sbjct: 3   DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---------------------- 40

Query: 301 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTLYKCLY--CHKVFKKSTSFDKHME 358
                     C    R F+ +  L  H   HT EK  +KC +  C K + +  +   H+ 
Sbjct: 41  ---------GCSRELRPFKAQYMLVVHMRRHTGEK-PHKCTFEGCRKSYSRLENLKTHLR 90

Query: 359 HHNRNVLHKCH--LCTKAYPSEKNLDRHLL-THNVRRSFRCKS--CGRRFESEELLIVHQ 413
            H     + C    C+KA+ +  +  +H   TH+  + + CK   C +R+     L  H 
Sbjct: 91  SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150

Query: 414 VIH 416
              
Sbjct: 151 KTV 153

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 25 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 80
               C+   C + F ++  +  H    H  QK + C    C + + +K +LK H+K+H 
Sbjct: 5  SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64

Query: 81 GPKIFTCAQCDKAF 94
            + + C     + 
Sbjct: 65 DTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 394 FRCKS--CGRRFESEELLIVHQVI---HERKFHKCTQ--CEESFKNKKHLKQHLLAHEKV 446
             C    CGR F + + L  H+     H++ F  C +  C +SF  KKHLK+H+  H   
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSF-SCPEPACGKSFNFKKHLKEHMKLHSDT 66

Query: 447 KVFHCPKCPKLF 458
           + + C       
Sbjct: 67  RDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 416 HERKFHKCT--QCEESFKNKKHLKQHL-LAHEKVKVFHCP--KCPKLFRHESHLQNHVIV 470
                  C    C   F N+++L  H    H   K F CP   C K F  + HL+ H+ +
Sbjct: 4   GSSGM-PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62

Query: 471 HDESEVHKCLYCFKVF 486
           H ++  + C +     
Sbjct: 63  HSDTRDYICEFSGPSS 78

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 56.3 bits (135), Expect = 5e-10
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAAT----HDLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
             KF+C+ C  ++D    +  HM  T     D  +             K +L        
Sbjct: 17  ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76

Query: 81  GPKIFTCAQCDKAFSLKSNLSKHV--RHHMENV 111
             K+  C  C  +F    +LS H+    H + V
Sbjct: 77  AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 50.5 bits (120), Expect = 7e-08
 Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 8/107 (7%)

Query: 71  NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK------QCKICLEIFEDD 124
           + K +  +  G   F C  C  A+     L+ H+                          
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 125 EVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH-IDMKHADENLFK 169
             L E       ++  KC  C   F S   +  H I  KH  +    
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 47.5 bits (112), Expect = 8e-07
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 377 SEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEE------SF 430
           S  +   +         FRCK C   +++   L VH            + +       S 
Sbjct: 3   SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62

Query: 431 KNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVI 469
             K+ L +     +  KV  C  C   F     L  H+I
Sbjct: 63  PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME--HHNRNVLHKCHLCTKAY---PSE 378
              +    T     ++C  C   +        HM    H R+  H+           P +
Sbjct: 7   GKLYGSIFTGASK-FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 379 KNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVH 412
           ++L       + ++  +C  CG  FES + L VH
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 5/101 (4%)

Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIV-----HDESEVHKCLYCFKVFVHK 489
             K +         F C  C   +     L  H+        D  E             K
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 490 AHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEY 530
             L +     +  ++  C +C  +F +  DL  HM   + Y
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 25  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 82
                   C K++   S+++ H+  TH  +K Y C    C   +     L  H + H G 
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63

Query: 83  KIFTCAQCDKAFSLKSNLSKHVRHHM 108
           + F C +CD+AFS   +L+ H++ H 
Sbjct: 64  RPFQCQKCDRAFSRSDHLALHMKRHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 388 HNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAH 443
                +     CG+ +     L  H   H  E+ +  C    C   F     L +H   H
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPY-HCDWDGCGWKFARSDELTRHYRKH 60

Query: 444 EKVKVFHCPKCPKLFRHESHLQNHVIVH 471
              + F C KC + F    HL  H+  H
Sbjct: 61  TGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 416 HERKF-HKCTQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHD 472
                      C +++    HLK HL  H   K +HC    C   F     L  H   H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 473 ESEVHKCLYCFKVFVHKAHLDKHLILH 499
                +C  C + F    HL  H+  H
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHLILHE 500
                      C K +   SHL+ H+  H   + + C    C   F     L +H   H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 501 TSEMHNCDFCHLTFTTDNDLIRHMRSH 527
                 C  C   F+  + L  HM+ H
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 51  HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM 108
                      C + Y    +LKAHL+ H G K + C    C   F+    L++H R H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 109 -ENVKQCKICLEIFEDDEVLEEHVKSH 134
                QC+ C   F   + L  H+K H
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 331 HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTH 388
            T   T      C K + KS+    H+  H     + C    C   +     L RH   H
Sbjct: 2   RTATHT-CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60

Query: 389 NVRRSFRCKSCGRRFESEELLIVHQVIH 416
              R F+C+ C R F   + L +H   H
Sbjct: 61  TGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQ 135
                    A C K ++  S+L  H+R H  E    C    C   F   + L  H + H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 136 N-RRFKCPCCERIFT 149
             R F+C  C+R F+
Sbjct: 62  GHRPFQCQKCDRAFS 76

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATH----DLQKKYKCKLCARMYRYKWNLKAHLKMHK 80
          E+ + C  C K+F  K  +  H    +     +   + C  C + +  +  +  H     
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71

Query: 81 GPKIFTCAQCDKAF 94
          GP          + 
Sbjct: 72 GPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 50  THDLQKKYKCKLCARMYRYKWNLKAHLKMHKG----PKIFTCAQCDKAFSLKSNLSKHVR 105
           TH  +K Y C  C + +R K  L  H K +      P  F C++C K F+ ++ +++H  
Sbjct: 9   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68

Query: 106 HH 107
           + 
Sbjct: 69  NC 70

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 47.1 bits (113), Expect = 4e-07
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 409 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH----EKVKVFHCPKCPKLFRHES 462
                  H  E K + C+ C+++F+ K+ L  H   +         F C KC K F   +
Sbjct: 3   SGSSGRTHTGE-KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 463 HLQNHVIVHDESEVHKCLYCFKVF 486
            +  H       +  +        
Sbjct: 62  TMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 25/108 (23%)

Query: 71  NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEE 129
           +  +  + H G K + C+ CDK F  K  L  H + +H  N                   
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP---------------- 45

Query: 130 HVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF 177
                    F C  C + FT    M  H D   A  +  + +      
Sbjct: 46  -------AAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH-----ERKFHKCTQCEESFKNKK 434
           +      TH   + + C  C + F  ++LL +H   +           C++C ++F  + 
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 435 HLKQHLLAHEKVKVFHCPKCPKLF 458
            + +H                   
Sbjct: 62  TMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 324 LTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHME-HHNRNVLHK---CHLCTKAYPSEK 379
             +   +HT EK  Y C +C K F++    D H + +H+ N +     C  C K +    
Sbjct: 3   SGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 380 NLDRHLLTHNVRRSFRCKSCGRRF 403
            + RH            ++ G   
Sbjct: 62  TMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 186 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYH---NKEDAYVCNYCYDSFETKSTLVD 240
            GR H   K Y CS C+K F  + ++  HF+ YH       A+VC+ C  +F  ++T+  
Sbjct: 6   SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 241 H-FFHHG-NPYMCNHC 254
           H     G +     + 
Sbjct: 66  HADNCAGPDGVEGENS 81

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 50  THDLQKKYKCKLCARMYRYKWNLKAHL--KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           T + +  Y+CK+C+R+Y +  N   H      +  K++ C  C K F+ K N++ HV+  
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 421 HKCTQCEESFKNKKHLKQHL--LAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
           ++C  C   + +  +  +H        VKV+ CP C K F  + ++  HV + 
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 443 HEKVKVFHCPKCPKLFRHESHLQNH--VIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
            E    + C  C +++ H S+   H         +V+ C +CFK F  K ++  H+ + 
Sbjct: 5   KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 387 THNVRRSFRCKSCGRRFESEELLIVHQVIH---ERKFHKCTQCEESFKNKKHLKQHLLAH 443
           T     ++RCK C R +        H V       K + C  C + F  K ++  H+   
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

Query: 444 EKV 446
            K+
Sbjct: 64  HKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 328 ELSHTMEKTLYKCLYCHKVFKKSTSFDKHM--EHHNRNVLHKCHLCTKAYPSEKNLDRHL 385
           E +   E T Y+C  C +V+   ++F +H    H     ++ C  C K +  + N+  H+
Sbjct: 2   EFTKEGEHT-YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

Query: 386 LTHN 389
              +
Sbjct: 61  KIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 310 KCRYCQRMFRNEDKLTAHELS--HTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNR 362
           +C+ C R++ +      H ++      K  Y C +C K F +  +   H++  ++
Sbjct: 12  RCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 409 LIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAH--EKVKVFHCPKCPKLFRHESHL 464
                  H  E+ + +C  C   F     +K H+L    E V  FHCP C  +   +S L
Sbjct: 3   SGSSGRTHSGEKPY-ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 465 QNHV 468
             H+
Sbjct: 62  GVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 71  NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVK--QCKICLEIFEDDEVL 127
           +  +  + H G K + C  C   F+    +  H+   H ENV    C  C  +      L
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 128 EEHVKSH 134
             H++  
Sbjct: 62  GVHLRKQ 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAA-THDLQKKYKCKLCARMYRYKWNLKAHL-KMHKGP 82
          E+ ++C +C   F     ++ H+     +   K+ C  C  +   K +L  HL K H   
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72

Query: 83 K 83
           
Sbjct: 73 G 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.0 bits (110), Expect = 8e-07
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH--DESEVHKCLYCFKVFVHKAHL 492
                   H   K + C  C   F     ++ H++    +      C +C  V   K+ L
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 493 DKHLILHETSE 503
             HL    +  
Sbjct: 62  GVHLRKQHSYS 72

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 491 HLDKHLILHETSEM-HNCDFCHLTFTTDNDLIRHMRSH-EEYHTKHTCDICGEKFINDLK 548
                   H + E  + C  CH  FT    +  H+     E   K  C  C         
Sbjct: 2   SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 549 LKAHIKIIH 557
           L  H++  H
Sbjct: 61  LGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 168 FKCKKCLKVFSDEIKFHLHGRAH----AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 223
           ++C  C   F+      +H           + C  C+   A +  +  H R  H+     
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 323 KLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVL--HKCHLCTKAYPSEKN 380
              +   +H+ EK  Y+C  CH  F +S +   H+   +   +    C  C      + +
Sbjct: 2   SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 381 LDRHLLTH 388
           L  HL   
Sbjct: 61  LGVHLRKQ 68

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 52.6 bits (127), Expect = 7e-09
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 25  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 80
            R   C+   C K +   S+++ H+  TH  +K YKC    C   +     L  H + H 
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71

Query: 81  GPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           G K F C  C+++FS   +L+ H++ H
Sbjct: 72  GAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 352 SFDKHMEHHNRNVLHKCHL--CTKAYPSEKNLDRHLLTHNVRRSFRC--KSCGRRFESEE 407
           S         +  +H C    CTK Y    +L  HL TH   + ++C  + C  RF   +
Sbjct: 2   SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61

Query: 408 LLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQHLLAHE 444
            L  H   H   + F +C  C  SF    HL  H+  H+
Sbjct: 62  ELTRHYRKHTGAKPF-QCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 391 RRSFRCK--SCGRRFESEELLIVHQVIH--ERKFHKCT--QCEESFKNKKHLKQHLLAHE 444
           RR   C    C + +     L  H   H  E+ + KCT   C+  F     L +H   H 
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY-KCTWEGCDWRFARSDELTRHYRKHT 71

Query: 445 KVKVFHCPKCPKLFRHESHLQNHVIVH 471
             K F C  C + F    HL  H+  H
Sbjct: 72  GAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 418 RKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDE 473
           R+ H C    C + +    HLK HL  H   K + C    C   F     L  H   H  
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72

Query: 474 SEVHKCLYCFKVFVHKAHLDKHLILHE 500
           ++  +C  C + F    HL  H+  H+
Sbjct: 73  AKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 439 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKC--LYCFKVFVHKAHLDKHL 496
             L   ++     P C K++   SHL+ H+  H   + +KC    C   F     L +H 
Sbjct: 8   PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67

Query: 497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE 528
             H  ++   C  C+ +F+  + L  HM+ H+
Sbjct: 68  RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 318 FRNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHL--CTKAY 375
             +          H  +        C KV+ KS+    H+  H     +KC    C   +
Sbjct: 3   SGSSGPDLEKRRIHYCDYP-----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57

Query: 376 PSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE 417
                L RH   H   + F+C  C R F   + L +H   H+
Sbjct: 58  ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 51.7 bits (125), Expect = 9e-09
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 41  SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 100
            +   H        K YKC  C   +RYK NL +H  +H G K + C  C   F+  +NL
Sbjct: 3   HHHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61

Query: 101 SKHVRHH 107
             H R H
Sbjct: 62  KTHTRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 435 HLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDK 494
           H   H       K + C +C   FR++ +L +H  VH   + ++C  C   F   A+L  
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 495 HLILH 499
           H  +H
Sbjct: 64  HTRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 380 NLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLK 437
           +   H    +  + ++C  C   F  +  L  H+ +H  E K ++C  C   F    +LK
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE-KPYRCNICGAQFNRPANLK 62

Query: 438 QH 439
            H
Sbjct: 63  TH 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 70/532 (13%), Positives = 136/532 (25%), Gaps = 168/532 (31%)

Query: 70  WNLKAHL-KMHKGPKIF---------TC--AQCDKAFSLKSNLSKHVRHHMENVKQCKIC 117
             L+  L ++     +          T        ++ ++  +   +     N+K C   
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCN-- 193

Query: 118 LEIFEDDEVLEEHVKSHQN--RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK---K 172
                 + VLE      Q    +       R   S         ++     L K K    
Sbjct: 194 ----SPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 173 CLKVFSD----EI--KFHLHGRAHAKFYRCSECEKRFATEDI---------MRQHFRNYH 217
           CL V  +    +    F+L             C+    T               H    H
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS------------CKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 218 NKEDAYVCNYCYDSFETKSTLVDHFFHH-----------GNPYMCNHCFLMFPDEKNLRN 266
           +              E KS L+  +               NP   +    +  +   +R+
Sbjct: 294 HSMT-------LTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLS----IIAES--IRD 339

Query: 267 HECTSCFTCPFCQRKYKIEKHLEKHIESCI-QLNPTTTVLKTLQKCRYCQ-RMFRNEDKL 324
              T         +    +K L   IES +  L P         +  + +  +F     +
Sbjct: 340 GLATWDNW-----KHVNCDK-LTTIIESSLNVLEP------AEYRKMFDRLSVFPPSAHI 387

Query: 325 TAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCH---LCTKAYPSEKNL 381
                       L   L     +      D         V++K H   L       EK  
Sbjct: 388 P--------TILL--SLI----WFDVIKSDV------MVVVNKLHKYSLV------EKQP 421

Query: 382 DRHLLT-HNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNK------ 433
               ++  ++    + K        E    +H+ I +     K    ++           
Sbjct: 422 KESTISIPSIYLELKVK-------LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 434 KHLKQHLLA---HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVF---- 486
            H+  HL      E++ +F       +F     L+  +  HD +  +             
Sbjct: 475 SHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLK 528

Query: 487 VHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE--YHTKHTC 536
            +K ++  +       E              N ++  +   EE    +K+T 
Sbjct: 529 FYKPYICDN---DPKYERL-----------VNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 9e-08
 Identities = 72/626 (11%), Positives = 151/626 (24%), Gaps = 200/626 (31%)

Query: 156 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 215
           +H+D +   E+ ++ K  L VF D              + C +       +D+ +     
Sbjct: 5   HHMDFE-TGEHQYQYKDILSVFEDAFV---------DNFDCKD------VQDMPKSILSK 48

Query: 216 Y---------HNKEDAYVCNYCYDSFETK-STLVDHFFHHGNPYMCNHCFLM--FPDEKN 263
                                 + +  +K   +V  F         N+ FLM     E+ 
Sbjct: 49  EEIDHIIMSKDAVSGTL---RLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQR 103

Query: 264 LRNHECTSCFTC---------PFCQRKYKIEKHLEKHIESCIQLNP-------------- 300
             +                   F +      +   K  ++ ++L P              
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 301 TTTVLKTLQ----KCRYCQRMF----RNEDKLTAHELSHTMEKTLYKCLYCHKVFKKSTS 352
           T   L        +C+   ++F    +N +     E    M + L      +++    TS
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKL-----LYQIDPNWTS 215

Query: 353 FDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTH-----------NVRRS-------F 394
              H      N+  + H       S +   R LL             NV+ +        
Sbjct: 216 RSDHSS----NIKLRIH-------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 395 RCK--------SCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKV 446
            CK               +     +    H        + +         +   L  E +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVL 323

Query: 447 KV--FHCPKCPKLFRHE-SHLQN----------HVI-----VHDESEVHKCLYCFKVF-- 486
                      +  R   +   N           +I     V + +E  K      VF  
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 487 --------------------------------------------VHKAHLDKHLILHETS 502
                                                       +   +L+  + L    
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 503 EMHN---------CDFCHLTFTTDND-------LIRHMRSHEEYHTKHTCDICGEKFIND 546
            +H            F                 +  H+++ E         +    F++ 
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRMVFLDF 500

Query: 547 LKLKAHIKIIHNLFTCIHCG---DTLNNAKDYASHLLIIHNIESSQQVEKNLNNMYNLLT 603
             L+   KI H+       G   +TL   K Y  +  I  N    +++   + +    + 
Sbjct: 501 RFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIE 556

Query: 604 THIEYHHSQNNIESESNQSSGFMYND 629
            ++      + +          ++ +
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 65/392 (16%), Positives = 118/392 (30%), Gaps = 107/392 (27%)

Query: 26  RKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYK-------WNLKAHLKM 78
            +       +S DH SNI+      H +Q + +  L ++ Y           N K     
Sbjct: 207 YQIDPNWTSRS-DHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNA 261

Query: 79  HKGPKIFTCAQC-------DK--AFSLKSNLSKHVR--------HHMENVKQCKICLEIF 121
                 F    C        K     L +  + H+            E        L+  
Sbjct: 262 ------FN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 122 EDD---EVLEEH----------VKSHQNR--RFKCPCCERIFTSETRMRNHIDMKHADEN 166
             D   EVL  +          ++        +K   C+++    T + + +++    E 
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAE- 370

Query: 167 LFKCKKCLKVFSDEIKF----------------------HLHGRAHAKFYRCSECEKRFA 204
             K    L VF                             LH  +  +       E   +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTIS 427

Query: 205 TEDI---MRQHFRNY---HNK-EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLM 257
              I   ++    N    H    D Y     +DS +     +D +F+    ++ +H    
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHL--- 481

Query: 258 FPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCR-YCQR 316
               KN+ + E  + F   F   ++ +E+   K        N + ++L TLQ+ + Y   
Sbjct: 482 ----KNIEHPERMTLFRMVFLDFRF-LEQ---KIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 317 MFRNEDKLTAHELSHTMEKTLYKC---LYCHK 345
           +  N+ K     L + +   L K    L C K
Sbjct: 534 ICDNDPKY--ERLVNAILDFLPKIEENLICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 36/149 (24%)

Query: 488 HKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDL 547
           H  H+D      ET E               D++                   + F+++ 
Sbjct: 3   HHHHMD-----FETGEHQYQY---------KDILSVFE---------------DAFVDNF 33

Query: 548 KLKAHIKIIHNLFTCIHCGDTLNNAKDYASHLLIIHNIESSQQ------VEKNLNNMYNL 601
             K    +  ++ +       + +    +  L +   + S Q+      VE+ L   Y  
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 602 LTTHIEYHHSQNNIESES-NQSSGFMYND 629
           L + I+    Q ++ +    +    +YND
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 39  HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKS 98
              +  R        +++YKC  C + + +  +L  H + H G K + C +C KAF  +S
Sbjct: 2   SSGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60

Query: 99  NLSKHVRHH 107
           +L  H R H
Sbjct: 61  HLIGHHRVH 69

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 409 LIVHQVIH-ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
               +    ER+ +KC +C +SF +   L +H   H   K + C +C K F   SHL  H
Sbjct: 6   SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

Query: 468 VIVH 471
             VH
Sbjct: 66  HRVH 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           K Y C  C + +     L  H ++H G K + C +C KAFS  S L  H R H
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 409 LIVHQVIHE-RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
                 IH   K + C +C ++F     L QH   H   K + C +C K F   S L NH
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 468 VIVH 471
             +H
Sbjct: 62  QRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 72  LKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEH 130
                 +H G K + C +C KAFS  S L +H R H  E   +C  C + F  +  L  H
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 131 VKSH 134
            + H
Sbjct: 62  QRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 381 LDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHER-KFHKCTQCEESFKNKKHLKQH 439
                  H+  + + C  CG+ F    +L+ HQ +H   K +KC +C ++F     L  H
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 73  KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVK 132
            +     +  +++ C  C+   S       H R    N   C  C   F   E+ +EH  
Sbjct: 5   SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHES 63

Query: 133 SHQNRRFKCPCCERIFTSETRMRNHIDMKHADENL 167
             + ++  C  C R F S   +  H    H   N+
Sbjct: 64  KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 365 LHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCT 424
           +++C LC     S      H      R +  C  C  RF S EL   H+   E K   C 
Sbjct: 16  VYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73

Query: 425 QCEESFKNKKHLKQH 439
           +C  +FK+   + +H
Sbjct: 74  ECMRTFKSSFSIWRH 88

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 164 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 223
           ++ +++C+ C    S  ++   H R       C  C  RF + ++ ++H      +    
Sbjct: 13  NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES--KCEYKKL 70

Query: 224 VCNYCYDSFETKSTLVDH 241
            C  C  +F++  ++  H
Sbjct: 71  TCLECMRTFKSSFSIWRH 88

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 220 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSC---FTCP 276
           ++ Y C  C     +      H     N  +C +C L F   +  + HE        TC 
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73

Query: 277 FCQRKYKIEKHLEKHIES 294
            C R +K    + +H   
Sbjct: 74  ECMRTFKSSFSIWRHQVE 91

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 54  QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ 113
           ++ Y+C+LC           +H ++ +      C  C   F       +H          
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71

Query: 114 CKICLEIFEDDEVLEEHVKSHQNRRFKCPC 143
           C  C+  F+    +  H     N+    P 
Sbjct: 72  CLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 127 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLH 186
                       ++C  C    +S     +H   +    N   C  C   F        H
Sbjct: 5   SSGASPVENKEVYQCRLCNAKLSSLLEQGSH---ERLCRNAAVCPYCSLRFFSPELKQEH 61

Query: 187 GRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKE 220
                 K   C EC + F +   + +H    HN+ 
Sbjct: 62  ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 273 FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT 332
           + C  C  K         H   C          +    C YC   F + +    HE    
Sbjct: 17  YQCRLCNAKLSSLLEQGSHERLC----------RNAAVCPYCSLRFFSPELKQEHESKCE 66

Query: 333 MEKTLYKCLYCHKVFKKSTSFDKH-MEHHNRNVL 365
            +K    CL C + FK S S  +H +E HN+N +
Sbjct: 67  YKK--LTCLECMRTFKSSFSIWRHQVEVHNQNNM 98

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 391 RRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFH 450
           +  ++C+ C  +  S      H+ +       C  C   F + +  ++H  +  + K   
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEHE-SKCEYKKLT 71

Query: 451 CPKCPKLFRHESHLQNHVI-VHDE 473
           C +C + F+    +  H + VH++
Sbjct: 72  CLECMRTFKSSFSIWRHQVEVHNQ 95

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHH 107
           + + C++C R +  + +LK H + H   K + C  C++AF+ +  L +H  + H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 421 HKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNH 467
             C  C  +F  ++HLK+H  +H   K + C  C + F     L  H
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 392 RSFRCKSCGRRFESEELLIVHQVIH--ERKFHKCTQCEESFKNKKHLKQH 439
           RSF C+ C R F  +E L  H   H  E+ +  C  C  +F  +  L +H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPY-PCGLCNRAFTRRDLLIRH 49

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 30  CEMCPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC 87
            E C K+F   + ++ H   +H  Q  Y+C    C + +     LK H K+H G      
Sbjct: 6   FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

Query: 88  AQCDKAFSLKSNLSKHVRH 106
             C       +   KHV  
Sbjct: 65  DSCSFVGKTWTLYLKHVAE 83

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 421 HKCT--QCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEV 476
           + C    C ++FK    LK H  +H +   + C    C K F   S L+ H  VH     
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 477 HKCLYCFKVFVHKAHLDKH 495
            K   C  V        KH
Sbjct: 62  KKDDSCSFVGKTWTLYLKH 80

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 396 CKSCGRRFESEELLIVHQVIH--ERKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHC 451
            ++CG+ F+    L VHQ  H  +  + +C    C++ F     LK+H   H        
Sbjct: 6   FENCGKAFKKHNQLKVHQFSHTQQLPY-ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

Query: 452 PKCPKLFRHESHLQNHV 468
             C  + +  +    HV
Sbjct: 65  DSCSFVGKTWTLYLKHV 81

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 56  KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           KY C+ C    +    LK H++ H   + + C  C+ +F  K NL+KH++  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 27 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 83
          K+ CE C       S +++H+  TH   + Y C  C   ++ K NL  H+K     K
Sbjct: 1  KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 2/120 (1%)

Query: 321 EDKLTAHELSHTMEKTLYKCLYCHKVFKKSTSFDKHMEHHNRNVLHKCHLCTKAYPSEKN 380
           E  + +    +             +  K+        +   R ++    +       E +
Sbjct: 3   ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESS 61

Query: 381 LDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHL 440
               LL       F C  C   F S   L  H    E     C  C++ F +      H+
Sbjct: 62  YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHV 120

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%)

Query: 96  LKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMR 155
           + S   K++ +H        + LE  +    L    K       K          E+   
Sbjct: 6   VDSGSKKYLSNH--KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63

Query: 156 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 215
             + +     + F C  CL  FS  +    H R       C  C+K F + D    H   
Sbjct: 64  YRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK 122

Query: 216 YHN 218
            HN
Sbjct: 123 KHN 125

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 354 DKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRC-----KSCGRRFESEEL 408
           +  ++  ++  L            E+    H LT   +R  R          +  +    
Sbjct: 3   ESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY 62

Query: 409 LIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHV 468
           L             C  C   F +   LKQH+   E  KV  CP C K F       +HV
Sbjct: 63  LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 397 KSCGRRFESEELLIVHQVIHERKFH-----KCTQCEESFKNKKHLKQHLLAHEKVKVFHC 451
           K        EEL   HQ+  E+K       K         ++      LLA + +  F C
Sbjct: 18  KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77

Query: 452 PKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL 496
           P C   F     L+ H+   + ++V  C  C K F        H+
Sbjct: 78  PLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHV 120

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSH 134
            L   K    F C  C   FS   +L +H+R+  E+ K C +C + F   +   +HV   
Sbjct: 65  RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKK 123

Query: 135 QNR 137
            N 
Sbjct: 124 HNI 126

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 50  THDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVR 105
                + + C    C + Y    +LKAH + H G K F+C+   C++ F+    LS+H R
Sbjct: 11  DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70

Query: 106 HH 107
            H
Sbjct: 71  TH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 39  HKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSL 96
           H  N   +        + Y C +  C R +     L  H+++H G K F C  C + FS 
Sbjct: 4   HPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61

Query: 97  KSNLSKHVRHH 107
             +L+ H+R H
Sbjct: 62  SDHLTTHIRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 409 LIVHQVIHERKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQN 466
           L+ + V   R +  C    C+  F     L +H+  H   K F C  C + F    HL  
Sbjct: 9   LLNYVVPKMRPY-ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67

Query: 467 HVIVH 471
           H+  H
Sbjct: 68  HIRTH 72

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                  G K + C QC KAFS K +L  H+R H
Sbjct: 1   GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K F C +C   FS   +L KH+R H
Sbjct: 2   SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + CA+C KAF+++SNL KH + H
Sbjct: 2   SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G   F C++C K F+ K+NL  H + H
Sbjct: 2   SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                 G K + C+ C KAF+ KS L  H + H
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 9/34 (26%), Positives = 11/34 (32%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                  G K + C  C   F     L  H+R H
Sbjct: 1   GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K F C  C K+F  K NL  H R H
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 71  NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 130
           +     K+H G +   C++C   F  +S LS+           C+ C +    +  L + 
Sbjct: 5   SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP------MCEKCRKDSCQEAALNKD 58

Query: 131 VKSH 134
             + 
Sbjct: 59  EGNE 62

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +        K + C  C K ++ + NL  H R H
Sbjct: 2   SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C+QC K FSLKS L  H R H
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 49 ATHDLQKKYKCKLCARMYRYKWNLKAHLKM-HKGPKIFTCAQCDKAFS 95
          ++  + K Y C+ C + +    +L  H+K  H   +   C       S
Sbjct: 5  SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC 62
           + + C+ C K F    ++  H+   H  ++ +KC++ 
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K++ C +C K+FS    L KH R H
Sbjct: 2   SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K F C++C KAF+ KSNL  H R H
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + CA+C KAF+ +SNL  H + H
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C+ C K+F+ KS L  H + H
Sbjct: 2   SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C +C KAF+ KSNL  H R H
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K F C +C KAF+ KS LS H + H
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 16/186 (8%)

Query: 195 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHC 254
           +C  C+K     + ++    ++H     ++C  C  + ++ +       H    Y C  C
Sbjct: 9   KCGVCQKAVYFAEEVQCEGSSFHKSC--FLCMVCKKNLDSTT----VAVHGDEIY-CKSC 61

Query: 255 FLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 314
           +      K           +    +      +  + H  +    +     +     C  C
Sbjct: 62  YGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRC 121

Query: 315 QRMFRNEDKLTAHELS-HTMEKTLYKCLYCHKVFKKSTSFDKHME-----HHNRNVLHKC 368
            +     +K+     S H   K+ ++C  C K  + +T  DK  E      + +N   K 
Sbjct: 122 GQAVYAAEKVIGAGKSWH---KSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKG 178

Query: 369 HLCTKA 374
               + 
Sbjct: 179 FGFGQG 184

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                   K   C +C + F+LKS+L++H R H
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K+F C +C K F+  S+L+ H R H
Sbjct: 2   SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G   + C+QC+K+FS K  L  H R H
Sbjct: 2   SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C++C KAFS KS L  H+R H
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G + + C  C KAF+ +SNL KH + H
Sbjct: 2   SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 108
             +   G K F C  CD++FS   +L+ H + HM
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
             G   + C QC K+F+ + +L+ H R  
Sbjct: 6   SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C +C K ++ K NL  H + H
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                 G K F CA+C K+FS+ S L+ H R H
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C +C KAF  KS L  H R H
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C +C K+F   S L KH R H
Sbjct: 2   SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 79  HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
             G K F C+ C+KAFS KS L  H + H
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C +C K +  + +L  H R H
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                 G K ++C  C KAF L ++L++H+R H
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C+ C K+F  KS L  H R H
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K F C +C K F   S    H R H
Sbjct: 2   SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
                 G + + C++C KAF  KS LS H R H
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K F C +C K FS +S L+ H + H
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 74  AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +      G K + C +C KAF+ K+NL++H R H
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	693
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.98
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.78
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.76
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.74
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.72
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.68
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.61
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.6
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.6
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.59
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.57
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.56
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.54
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.53
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.53
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.52
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.51
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.5
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.49
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.49
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.48
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.46
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.46
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.45
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.42
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.4
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.4
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.4
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.37
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.35
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.34
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.32
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.32
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.3
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.23
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.22
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.21
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.18
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.15
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.12
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.12
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.11
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.11
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.11
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.1
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.09
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.06
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.05
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.02
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.02
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.02
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.02
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.99
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.98
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.98
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.97
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.97
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.96
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.96
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.95
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.95
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.94
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.93
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.91
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.9
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.89
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.87
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.85
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.85
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.85
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.84
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.83
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.83
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.82
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.81
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.76
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.74
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.68
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.61
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.59
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.57
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.54
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.54
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.49
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.47
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.42
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.39
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.38
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.33
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.31
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.23
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.2
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.19
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.18
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.15
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.11
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.1
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.09
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.09
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.0
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.98
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.98
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.97
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.97
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.95
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.95
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.93
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.93
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.92
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.91
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.9
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.9
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.9
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.9
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.89
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.89
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.89
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.89
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.88
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.87
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.87
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.86
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.86
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.07
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.85
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.05
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.05
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.02
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.78
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.77
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.75
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.87
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.83
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.47
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.46
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.09
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.35
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.02
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.57
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.53
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.88
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.57
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.41
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.77
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.84
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	80.69

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.1e-37  Score=298.78  Aligned_cols=183  Identities=27%  Similarity=0.507  Sum_probs=93.0

Q ss_pred             ccccccccccCCCcccccCCCCccCCCchhhhhhhhhccCCcccccCccccccCChhHhhhcccccc-cccccCCCCccc
Q psy2875         351 TSFDKHMEHHNRNVLHKCHLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFESEELLIVHQVIHE-RKFHKCTQCEES  429 (693)
Q Consensus       351 ~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~-~k~~~C~~C~k~  429 (693)
                      ..|..|+..+.++++|.|++|++.|.+...|..|+++|.++++|.|++|++.|.+...|..|+++|. +++|.|++|++.
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            3455566666666666666666666666666666666666666666666666666666666655553 455666666666


Q ss_pred             cCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         430 FKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       430 f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      |.+...|..|+++|.++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~  166 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPE  166 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcccCCChhHHHHHHhhhcCCCCcc
Q psy2875         510 CHLTFTTDNDLIRHMRSHEEYHTKH  534 (693)
Q Consensus       510 C~~~f~~~~~L~~H~~~H~~~~~~~  534 (693)
                      ||+.|.+...|..|+++|+|+ +||
T Consensus       167 C~~~f~~~~~L~~H~~~H~~~-k~~  190 (190)
T 2i13_A          167 CGKSFSRRDALNVHQRTHTGK-KTS  190 (190)
T ss_dssp             TCCEESSHHHHHHHHTTC-------
T ss_pred             CCCccCCHHHHHHHHHhcCCC-CCC
Confidence            666666666666666666655 554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=5.8e-38  Score=300.62  Aligned_cols=180  Identities=23%  Similarity=0.424  Sum_probs=90.8

Q ss_pred             HHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCccc
Q psy2875         434 KHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLT  513 (693)
Q Consensus       434 ~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~  513 (693)
                      ..|..|+++|.+++||.|++|++.|.+...|..|+++|+++++|.|+.|++.|.+...|..|+++|++++||.|++||+.
T Consensus         7 ~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             ------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             ccchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            34555555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccCC--CcccccchhhcCChHHHHHHhhhhcCCCC--hh
Q psy2875         514 FTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN--LFTCIHCGDTLNNAKDYASHLLIIHNIES--SQ  589 (693)
Q Consensus       514 f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~--~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--c~  589 (693)
                      |.+...|..|+++|+++ +||.|++|++.|.+...|..|+++++.  ||.|++||++|.+...|..|+++|++++|  |+
T Consensus        87 f~~~~~l~~H~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  165 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGE-KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP  165 (190)
T ss_dssp             ESCHHHHHHHHHHHHTC-CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             cCCHHHHHHHHHhcCCC-CCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECC
Confidence            66666666666666555 566666666666666666666653332  56666666666666666666666666655  66


Q ss_pred             hhhhhhhcCchHHHHHhhhhcCCCCC
Q psy2875         590 QVEKNLNNMYNLLTTHIEYHHSQNNI  615 (693)
Q Consensus       590 ~c~~~f~~~~~~l~~h~~~h~~~~~~  615 (693)
                      +||+.|... +.|..|+++|+|++||
T Consensus       166 ~C~~~f~~~-~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          166 ECGKSFSRR-DALNVHQRTHTGKKTS  190 (190)
T ss_dssp             TTCCEESSH-HHHHHHHTTC------
T ss_pred             CCCCccCCH-HHHHHHHHhcCCCCCC
Confidence            666666666 6666666666666665

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.98  E-value=3.9e-32  Score=260.02  Aligned_cols=166  Identities=28%  Similarity=0.459  Sum_probs=153.8

Q ss_pred             cccccC--CCCccccCChHHHHHHHHhccCCCcccc--CcCcccccchhHHHHHHHhcCCCCceecc--ccCccccchhh
Q psy2875         418 RKFHKC--TQCEESFKNKKHLKQHLLAHEKVKVFHC--PKCPKLFRHESHLQNHVIVHDESEVHKCL--YCFKVFVHKAH  491 (693)
Q Consensus       418 ~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~f~~~~~  491 (693)
                      .++|.|  +.|++.|.+...|..|+++|++++||.|  +.|++.|.+...|..|+++|++++||.|+  .|++.|.+...
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~   89 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN   89 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHH
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHH
Confidence            678999  6899999999999999999999999999  88999999999999999999999999999  89999999999


Q ss_pred             HHHHH-Hhh-CCCCcccC--CcCcccCCChhHHHHHHhhhcCCCCcccccc--cccccCChHhHHHHHhccCCCccccc-
Q psy2875         492 LDKHL-ILH-ETSEMHNC--DFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI--CGEKFINDLKLKAHIKIIHNLFTCIH-  564 (693)
Q Consensus       492 L~~H~-~~H-~~~~~~~C--~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~C~~-  564 (693)
                      |..|+ +.| .++++|.|  ++||+.|.+...|..|+++|+++ +||.|++  |+++|.+...|..|++ +|+.|.|+. 
T Consensus        90 l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~-~~~~C~~~~C~k~F~~~~~L~~H~~-~H~~~~C~~~  167 (190)
T 1tf6_A           90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ-LPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD  167 (190)
T ss_dssp             HHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSS-CSSBCCSSSCCCBCSSHHHHHHHHT-SSCSCCCCST
T ss_pred             HHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCC-CCccCCCCCCCchhcCHHHHHHHHH-HhCCCcCCCC
Confidence            99999 667 47889999  88999999999999999999998 9999988  9999999999999999 666699999 


Q ss_pred             --chhhcCChHHHHHHhhhhcCC
Q psy2875         565 --CGDTLNNAKDYASHLLIIHNI  585 (693)
Q Consensus       565 --C~~~f~~~~~l~~H~~~h~~~  585 (693)
                        ||+.|.+...|.+|+++|+|+
T Consensus       168 ~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          168 DSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             TTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CcCCCccccHHHHHHHHHhhcCC
Confidence              999999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=7.2e-31  Score=251.24  Aligned_cols=155  Identities=26%  Similarity=0.433  Sum_probs=91.0

Q ss_pred             ccccccCChhHhhhcccccc-cccccC--CCCccccCChHHHHHHHHhccCCCccccC--cCcccccchhHHHHHH-Hhc
Q psy2875         398 SCGRRFESEELLIVHQVIHE-RKFHKC--TQCEESFKNKKHLKQHLLAHEKVKVFHCP--KCPKLFRHESHLQNHV-IVH  471 (693)
Q Consensus       398 ~C~k~f~~~~~L~~H~~~h~-~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~k~f~~~~~L~~H~-~~H  471 (693)
                      .|++.|.+...|..|+++|. +++|.|  +.|++.|.+...|..|+++|.+++||.|+  .|++.|.+...|..|+ +.|
T Consensus        19 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             TTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTS
T ss_pred             CCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            34444444444444444432 344455  45555555555566666666666666666  5666666666666666 444


Q ss_pred             -CCCCceec--cccCccccchhhHHHHHHhhCCCCcccCCc--CcccCCChhHHHHHHhhhcCCCCcccccc---ccccc
Q psy2875         472 -DESEVHKC--LYCFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTCDI---CGEKF  543 (693)
Q Consensus       472 -~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~~C~~---C~~~f  543 (693)
                       .++++|.|  +.|++.|.+.+.|..|+++|++++||.|++  ||++|.+...|..|+++|++    |.|++   |++.|
T Consensus        99 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~----~~C~~~~~C~~~f  174 (190)
T 1tf6_A           99 NIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVG  174 (190)
T ss_dssp             STTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS----CCCCSTTTCCCCC
T ss_pred             CCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC----CcCCCCCcCCCcc
Confidence             34556666  556666666666666666666666666655  66666666666666666654    55666   66666


Q ss_pred             CChHhHHHHHhcc
Q psy2875         544 INDLKLKAHIKII  556 (693)
Q Consensus       544 ~~~~~L~~H~~~~  556 (693)
                      .+...|..|++++
T Consensus       175 ~~~~~l~~H~~~h  187 (190)
T 1tf6_A          175 KTWTLYLKHVAEC  187 (190)
T ss_dssp             SCHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHhh
Confidence            6666666666633

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=1.4e-27  Score=220.34  Aligned_cols=142  Identities=24%  Similarity=0.457  Sum_probs=76.3

Q ss_pred             ccccCCCCccCCCchhhhhhhh---hccCCcccccCccccccCChhHhhhcccccccccccCCCCccccCChHHHHHHHH
Q psy2875         365 LHKCHLCTKAYPSEKNLDRHLL---THNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLL  441 (693)
Q Consensus       365 ~~~C~~C~k~f~~~~~L~~H~~---~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~H~~  441 (693)
                      +|.|+.|++.|.+...|..|++   +|.++++|.|++|+                      |+.|++.|.+...|..|++
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~----------------------C~~c~~~f~~~~~l~~H~~   60 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------------------CSRELRPFKAQYMLVVHMR   60 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT----------------------CTTTTCCCSSHHHHHHHTH
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC----------------------ccchhhhhhhHHHHHHHHH
Confidence            4455555555555555555554   34444555554442                      4445555555555555555


Q ss_pred             hccCCCccccCc--CcccccchhHHHHHHHhcCCCCceeccc--cCccccchhhHHHHH-HhhCCCCcccCCc--CcccC
Q psy2875         442 AHEKVKVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHL-ILHETSEMHNCDF--CHLTF  514 (693)
Q Consensus       442 ~h~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~-~~H~~~~~~~C~~--C~~~f  514 (693)
                      +|++++||.|++  |+++|.+...|..|+++|++++||.|++  |++.|.+.+.|..|+ ++|++++||.|++  ||+.|
T Consensus        61 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             HHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             hcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            555555555553  5555555555555555555555555555  555555555555555 4555555555555  55555


Q ss_pred             CChhHHHHHHhhhc
Q psy2875         515 TTDNDLIRHMRSHE  528 (693)
Q Consensus       515 ~~~~~L~~H~~~H~  528 (693)
                      .+...|..|+++|+
T Consensus       141 ~~~~~L~~H~~~hh  154 (155)
T 2gli_A          141 TDPSSLRKHVKTVH  154 (155)
T ss_dssp             SSHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHhhc
Confidence            55555555555554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=7.5e-27  Score=215.38  Aligned_cols=138  Identities=25%  Similarity=0.527  Sum_probs=94.2

Q ss_pred             ccccCCCCccccCChHHHHHHHH---hccCCCccccCcC-----cccccchhHHHHHHHhcCCCCceeccc--cCccccc
Q psy2875         419 KFHKCTQCEESFKNKKHLKQHLL---AHEKVKVFHCPKC-----PKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVH  488 (693)
Q Consensus       419 k~~~C~~C~k~f~~~~~L~~H~~---~h~~~~~~~C~~C-----~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~  488 (693)
                      .+|.|+.|++.|.+...|..|++   +|.++++|.|++|     ++.|.+...|..|+++|++++||.|++  |++.|.+
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            35677777777777777777776   5667777776643     366777777777777776666777764  7777777


Q ss_pred             hhhHHHHHHhhCCCCcccCCc--CcccCCChhHHHHHH-hhhcCCCCcccccc--cccccCChHhHHHHHhccC
Q psy2875         489 KAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHM-RSHEEYHTKHTCDI--CGEKFINDLKLKAHIKIIH  557 (693)
Q Consensus       489 ~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~-~~H~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H  557 (693)
                      ...|..|+++|++++||.|++  ||+.|.+...|..|+ ++|+++ +||.|++  |+++|.++..|..|++++|
T Consensus        82 ~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           82 LENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE-KPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             HHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSC-CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCC-CCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            777777777776666777766  777777777777776 566665 6666666  6666666666666666544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=3.5e-25  Score=196.66  Aligned_cols=106  Identities=22%  Similarity=0.318  Sum_probs=54.5

Q ss_pred             HhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHH
Q psy2875         441 LAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDL  520 (693)
Q Consensus       441 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L  520 (693)
                      ++|+|++||.|++|+++|.+.+.|..|+++|++++||+|++||+.|.+.+.|..|+++|+|++||.|++||++|.+...|
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L   94 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM   94 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHH
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhhhcCC-----CCcccccccccccCCh
Q psy2875         521 IRHMRSHEEY-----HTKHTCDICGEKFIND  546 (693)
Q Consensus       521 ~~H~~~H~~~-----~~~~~C~~C~~~f~~~  546 (693)
                      ..|+++|+++     .++|+|.+|++.|...
T Consensus        95 ~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           95 SSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            5555554433     1345555565555443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=1.4e-24  Score=192.78  Aligned_cols=109  Identities=20%  Similarity=0.420  Sum_probs=96.3

Q ss_pred             hcccccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceecccccc
Q psy2875          13 EQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDK   92 (693)
Q Consensus        13 ~~l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~   92 (693)
                      ..+..|+.+|+|++||+|++||++|.+.+.|.+|++ +|++++||.|++||++|...+.|..|+++|+|++||.|++||+
T Consensus         8 ~h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k   86 (133)
T 2lt7_A            8 KHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGK   86 (133)
T ss_dssp             CCSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHH-HHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCC
T ss_pred             HHHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHH-HcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCC
Confidence            345667889999999999999999999999999998 8999999999999999999999999999999999999999999


Q ss_pred             ccCCchhHHhhhhccc-CCc------ccCCccCcccC
Q psy2875          93 AFSLKSNLSKHVRHHM-ENV------KQCKICLEIFE  122 (693)
Q Consensus        93 ~F~~~~~L~~H~~~h~-~~~------~~C~~C~~~f~  122 (693)
                      +|.+.+.|..|+++|+ ++|      |.|.+|++.|.
T Consensus        87 ~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           87 SFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             EESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             CcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhh
Confidence            9999999999999876 444      44444444443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=9.6e-24  Score=186.49  Aligned_cols=112  Identities=26%  Similarity=0.495  Sum_probs=61.2

Q ss_pred             CCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHh---hCCCCcccCCcCcccCCChhHHH
Q psy2875         445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLIL---HETSEMHNCDFCHLTFTTDNDLI  521 (693)
Q Consensus       445 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~---H~~~~~~~C~~C~~~f~~~~~L~  521 (693)
                      ++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|++.   |.++++|.|++|++.|.+...|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH
Confidence            445555555555555555555555555555555555555555555555555553   34455555555555555555555


Q ss_pred             HHHhhhcCCCCcccccccccccCChHhHHHHHhccC
Q psy2875         522 RHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIH  557 (693)
Q Consensus       522 ~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H  557 (693)
                      .|+++|+++ +||.|++|++.|.+...|..|++.+|
T Consensus        84 ~H~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           84 LHMVSHTGE-MPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             HHHHHHSSS-CSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             HHHHHcCCC-CCccCCCccchhCCHHHHHHHHHHHC
Confidence            555555554 55555555555555555555554444

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=1.1e-23  Score=184.61  Aligned_cols=110  Identities=26%  Similarity=0.481  Sum_probs=88.5

Q ss_pred             cCCCccccCc--CcccccchhHHHHHHHhcCCCCceecc--ccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhH
Q psy2875         444 EKVKVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCL--YCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDND  519 (693)
Q Consensus       444 ~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~  519 (693)
                      ++++||.|++  |++.|.+...|..|+++|++++||.|+  .|++.|.+...|..|+++|++++||.|++||+.|.+...
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            4677788876  888888888888888888888888887  688888888888888888888888888888888888888


Q ss_pred             HHHHHhhhcCCCCcccc--cccccccCChHhHHHHHh
Q psy2875         520 LIRHMRSHEEYHTKHTC--DICGEKFINDLKLKAHIK  554 (693)
Q Consensus       520 L~~H~~~H~~~~~~~~C--~~C~~~f~~~~~L~~H~~  554 (693)
                      |..|+++|+++ +||.|  ++||+.|.+...|..|++
T Consensus        82 l~~H~~~h~~~-~~~~C~~~~C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           82 LKTHTRTHTGE-KPFSCRWPSCQKKFARSDELVRHHN  117 (119)
T ss_dssp             HHHHHHHHHTC-CCEECCSTTCCCEESSHHHHHHHHH
T ss_pred             HHHHHHHhcCC-CCeeCCCCCCccccCCHHHHHHHHh
Confidence            88888888777 78888  678888888888888877

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.89  E-value=2.3e-23  Score=184.10  Aligned_cols=115  Identities=25%  Similarity=0.553  Sum_probs=84.9

Q ss_pred             cccccCC--CCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccc--cCccccchhhHH
Q psy2875         418 RKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLD  493 (693)
Q Consensus       418 ~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~  493 (693)
                      .++|.|+  .|++.|.+...|..|+++| ++++|.|++|++.|.+...|..|+++|++++||.|++  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            3567777  7777777777777777777 7777888888888888888888887887777888865  888888888888


Q ss_pred             HHHHhhCCCCcccCC--cCcccCCChhHHHHHHhhhcCCCCcc
Q psy2875         494 KHLILHETSEMHNCD--FCHLTFTTDNDLIRHMRSHEEYHTKH  534 (693)
Q Consensus       494 ~H~~~H~~~~~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~  534 (693)
                      .|+++|++++||.|+  .||+.|.+...|..|+++|+++ +++
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~-k~~  123 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA-KNN  123 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc-ccC
Confidence            888888888888885  4888888888888888888776 665

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=3.4e-23  Score=181.54  Aligned_cols=110  Identities=25%  Similarity=0.555  Sum_probs=103.5

Q ss_pred             cccccCCC--CccccCChHHHHHHHHhccCCCccccC--cCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHH
Q psy2875         418 RKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD  493 (693)
Q Consensus       418 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~  493 (693)
                      +++|.|++  |++.|.+...|..|+++|.+++||.|+  .|++.|.+...|..|+++|+++++|.|++|++.|.+...|.
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   83 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK   83 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHH
Confidence            57899987  999999999999999999999999999  79999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccC--CcCcccCCChhHHHHHHhhh
Q psy2875         494 KHLILHETSEMHNC--DFCHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       494 ~H~~~H~~~~~~~C--~~C~~~f~~~~~L~~H~~~H  527 (693)
                      .|+++|++++||.|  +.||+.|.+...|..|+++|
T Consensus        84 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999  89999999999999999886

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=7.7e-23  Score=180.66  Aligned_cols=113  Identities=28%  Similarity=0.501  Sum_probs=103.6

Q ss_pred             cccccCCCCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHh---cCCCCceeccccCccccchhhHHH
Q psy2875         418 RKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIV---HDESEVHKCLYCFKVFVHKAHLDK  494 (693)
Q Consensus       418 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~---H~~~~~~~C~~C~k~f~~~~~L~~  494 (693)
                      +++|.|++|++.|.+...|..|+++|.+++||.|++|++.|.+...|..|++.   |.++++|.|++|++.|.+...|..
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   84 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL   84 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHH
T ss_pred             CCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHH
Confidence            57899999999999999999999999999999999999999999999999985   678899999999999999999999


Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHh-hhcCC
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMR-SHEEY  530 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~-~H~~~  530 (693)
                      |+++|++++||.|++|++.|.+...|..|++ .|.++
T Consensus        85 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           85 HMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999997 46554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=4.2e-23  Score=190.13  Aligned_cols=119  Identities=24%  Similarity=0.465  Sum_probs=96.4

Q ss_pred             cccccCCCCccccCChHHHHHHHHh-ccCCCc--------cccCcCcccccchhHHHHHHHhcCCCCceeccc--cCccc
Q psy2875         418 RKFHKCTQCEESFKNKKHLKQHLLA-HEKVKV--------FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVF  486 (693)
Q Consensus       418 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f  486 (693)
                      ..+|.|.+|++.|.+...|..|+++ |.++++        |.|++|++.|.+...|..|+++|++++||.|++  |++.|
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  102 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF  102 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc
Confidence            4567777777777777777777776 665544        788888888888888888888888888888887  88888


Q ss_pred             cchhhHHHHHHhhCCCCcccCCc--CcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         487 VHKAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       487 ~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      .+...|..|+++|++++||.|++  ||+.|.+...|..|+++|+++ +||.|.
T Consensus       103 ~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~-k~~~c~  154 (155)
T 2rpc_A          103 ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD-KSGPSS  154 (155)
T ss_dssp             SCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC-CCSCSC
T ss_pred             CCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC-CCCCCC
Confidence            88888888888888888888886  888888888888888888887 888875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=5.9e-23  Score=181.43  Aligned_cols=116  Identities=28%  Similarity=0.580  Sum_probs=96.2

Q ss_pred             CcccccC--ccccccCChhHhhhcccccccccccCCCCccccCChHHHHHHHHhccCCCccccCc--CcccccchhHHHH
Q psy2875         391 RRSFRCK--SCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPK--CPKLFRHESHLQN  466 (693)
Q Consensus       391 ~~~~~C~--~C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~--C~k~f~~~~~L~~  466 (693)
                      +++|.|+  .|++.|.+...|..|+++|..++|.|++|++.|.+...|..|+++|++++||.|++  |++.|.+.+.|..
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~   82 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT   82 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGGSCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHcCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHH
Confidence            5678888  78888888888888888887788889999999999999999999999999999976  9999999999999


Q ss_pred             HHHhcCCCCceecc--ccCccccchhhHHHHHHhhCCCCccc
Q psy2875         467 HVIVHDESEVHKCL--YCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       467 H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      |+++|++++||.|+  .|++.|.+.+.|..|+++|+++++++
T Consensus        83 H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             HHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             HHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            99999999999995  49999999999999999999988763

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.87  E-value=1.3e-22  Score=186.78  Aligned_cols=130  Identities=22%  Similarity=0.423  Sum_probs=109.8

Q ss_pred             cCCCcccccCCCCccCCCchhhhhhhhh-ccCCcccccCccccccCChhHhhhcccccccccccCCCCccccCChHHHHH
Q psy2875         360 HNRNVLHKCHLCTKAYPSEKNLDRHLLT-HNVRRSFRCKSCGRRFESEELLIVHQVIHERKFHKCTQCEESFKNKKHLKQ  438 (693)
Q Consensus       360 h~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~k~~~C~~C~k~f~~~~~L~~  438 (693)
                      .....+|.|.+|++.|.+...|..|+++ |.++.+.....                   ..+|.|++|++.|.+...|..
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~-------------------~~~~~C~~C~~~f~~~~~l~~   80 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV-------------------CYWEECPREGKSFKAKYKLVN   80 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCC-------------------CCBTTCTTSSCCCSSHHHHHH
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCcc-------------------ccccCCCCcccccCCHHHHHH
Confidence            3455667777777777777777777776 55544322211                   134899999999999999999


Q ss_pred             HHHhccCCCccccCc--CcccccchhHHHHHHHhcCCCCceeccc--cCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         439 HLLAHEKVKVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       439 H~~~h~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      |+++|++++||.|++  |++.|.+...|..|+++|++++||.|++  |++.|.+.+.|..|+++|+|++||.|+
T Consensus        81 H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             HTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             HHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999998  9999999999999999999999999997  999999999999999999999999986

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.78  E-value=4.6e-19  Score=151.50  Aligned_cols=90  Identities=26%  Similarity=0.445  Sum_probs=60.8

Q ss_pred             CCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHH
Q psy2875         445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM  524 (693)
Q Consensus       445 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~  524 (693)
                      ++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.....|..|+++|++++||.|++|++.|.+...|..|+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhhcCCCCccc
Q psy2875         525 RSHEEYHTKHT  535 (693)
Q Consensus       525 ~~H~~~~~~~~  535 (693)
                      ++|+++ +||.
T Consensus        94 ~~H~~~-~~~~  103 (106)
T 2ee8_A           94 TLHMQT-SSPT  103 (106)
T ss_dssp             HHTTSC-CCCC
T ss_pred             HHhCCC-CCCc
Confidence            666666 6654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=3.7e-19  Score=149.06  Aligned_cols=88  Identities=25%  Similarity=0.464  Sum_probs=67.3

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHH
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIR  522 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~  522 (693)
                      +.+++||.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhhhcCC
Q psy2875         523 HMRSHEEY  530 (693)
Q Consensus       523 H~~~H~~~  530 (693)
                      |+++|+++
T Consensus        83 H~~~h~~~   90 (96)
T 2dmd_A           83 HLRSHTGD   90 (96)
T ss_dssp             HHTTCCSC
T ss_pred             HHHHhcCC
Confidence            77777776

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=3.7e-19  Score=147.07  Aligned_cols=86  Identities=24%  Similarity=0.601  Sum_probs=62.9

Q ss_pred             CCCccccC--cCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHH
Q psy2875         445 KVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIR  522 (693)
Q Consensus       445 ~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~  522 (693)
                      |++||.|+  .|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|++++||.|++||+.|.+...|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            35677776  4777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhhhcCC
Q psy2875         523 HMRSHEEY  530 (693)
Q Consensus       523 H~~~H~~~  530 (693)
                      |+++|+++
T Consensus        81 H~~~H~~~   88 (90)
T 1a1h_A           81 HTKIHLRQ   88 (90)
T ss_dssp             HHGGGGC-
T ss_pred             HHHHhccc
Confidence            77777765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.3e-19  Score=157.45  Aligned_cols=96  Identities=18%  Similarity=0.276  Sum_probs=84.7

Q ss_pred             hhcccccccccCCCcccccCCCCcccCChhhHHHHhhhc--CCCCCccc-cccccccc--CChhHHHHHHHhhcCCCcee
Q psy2875          12 QEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAAT--HDLQKKYK-CKLCARMY--RYKWNLKAHLKMHKGPKIFT   86 (693)
Q Consensus        12 ~~~l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~--H~~~k~~~-C~~C~~~f--~~~~~L~~H~~~H~~~~~~~   86 (693)
                      .+.|..|+++|++++||+|++|++.|.+...|..|++ +  |.+++++. |++|++.|  .....|..|+++|++++||.
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHH-HTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHH-HhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            4678899999999999999999999999999999998 6  66666654 99999988  88889999999999999999


Q ss_pred             ccccccccCCchhHHhhhhccc
Q psy2875          87 CAQCDKAFSLKSNLSKHVRHHM  108 (693)
Q Consensus        87 C~~C~~~F~~~~~L~~H~~~h~  108 (693)
                      |++|++.|.+...|..|++.|+
T Consensus        83 C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHTT
T ss_pred             CCCCCCccCCHHHHHHHHHHhC
Confidence            9999999999999999988776

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=4.5e-20  Score=160.42  Aligned_cols=94  Identities=19%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             HHHHHHhccCCCccccCcCcccccchhHHHHHHHh--cCCCCcee-ccccCccc--cchhhHHHHHHhhCCCCcccCCcC
Q psy2875         436 LKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIV--HDESEVHK-CLYCFKVF--VHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       436 L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~-C~~C~k~f--~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      |..|+++|++++||.|++|++.|.+...|..|+++  |.+++++. |++|++.|  .....|..|+++|++++||.|++|
T Consensus         7 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C   86 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYC   86 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSS
T ss_pred             hhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCC
Confidence            34445555555555555555555555555555555  44444332 55555555  455555555555555555555555


Q ss_pred             cccCCChhHHHHHHhhhcC
Q psy2875         511 HLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       511 ~~~f~~~~~L~~H~~~H~~  529 (693)
                      |+.|.+...|..|+++|+.
T Consensus        87 ~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           87 GHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCBCSSHHHHHHHHHHTTT
T ss_pred             CCccCCHHHHHHHHHHhCC
Confidence            5555555555555555443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=1.2e-18  Score=148.94  Aligned_cols=91  Identities=27%  Similarity=0.510  Sum_probs=85.6

Q ss_pred             ccccccCCCCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHH
Q psy2875         417 ERKFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL  496 (693)
Q Consensus       417 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~  496 (693)
                      .+++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~   93 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK   93 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCcccC
Q psy2875         497 ILHETSEMHNC  507 (693)
Q Consensus       497 ~~H~~~~~~~C  507 (693)
                      ++|++++||.+
T Consensus        94 ~~H~~~~~~~~  104 (106)
T 2ee8_A           94 TLHMQTSSPTA  104 (106)
T ss_dssp             HHTTSCCCCCC
T ss_pred             HHhCCCCCCcC
Confidence            99999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=3.5e-19  Score=152.50  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=57.7

Q ss_pred             HHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhH
Q psy2875         440 LLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDND  519 (693)
Q Consensus       440 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~  519 (693)
                      +++|++++||.|++|++.|.+...|..|+++|  ++||.|++|++.|.....|..|++ |++++||.|++|++.|.+...
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            34556666666666666666666666666665  346666666666666666666664 666666666666666666666


Q ss_pred             HHHHHh-hhcCCCCcccc
Q psy2875         520 LIRHMR-SHEEYHTKHTC  536 (693)
Q Consensus       520 L~~H~~-~H~~~~~~~~C  536 (693)
                      |..|++ +|+++ +||.|
T Consensus        85 L~~H~~~~H~~~-~~~~~  101 (107)
T 1wjp_A           85 IWRHQVEVHNQN-NMAPT  101 (107)
T ss_dssp             HHHHHHHTSCCC-CCCCC
T ss_pred             HHHHHHHHcCCC-CCCCC
Confidence            666665 55554 66654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.76  E-value=6.4e-19  Score=142.84  Aligned_cols=81  Identities=33%  Similarity=0.747  Sum_probs=47.8

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhh
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H  527 (693)
                      ||.|++|++.|.+...|..|+++|++++||.|+.|++.|.+...|..|+++|++++||.|++||+.|.+...|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            45555555555555555555555555555555555555555555555555555555555655666665555566665555


Q ss_pred             c
Q psy2875         528 E  528 (693)
Q Consensus       528 ~  528 (693)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2e-18  Score=144.61  Aligned_cols=87  Identities=34%  Similarity=0.598  Sum_probs=82.0

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccccccCCchhH
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL  100 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L  100 (693)
                      .+.+++||.|++|++.|.+...|..|++ +|.++++|.|++|++.|.....|..|+++|++++||.|++|++.|.+...|
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGG-GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHH
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHH-hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHH
Confidence            3568899999999999999999999998 899999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhccc
Q psy2875         101 SKHVRHHM  108 (693)
Q Consensus       101 ~~H~~~h~  108 (693)
                      ..|+++|+
T Consensus        81 ~~H~~~h~   88 (96)
T 2dmd_A           81 TVHLRSHT   88 (96)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHhc
Confidence            99999988

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=1e-18  Score=149.64  Aligned_cols=96  Identities=15%  Similarity=0.261  Sum_probs=87.2

Q ss_pred             cccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccccccC
Q psy2875          16 IPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS   95 (693)
Q Consensus        16 ~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~   95 (693)
                      ..++++|++++||+|++|++.|.+...|..|++ +|  +++|.|++|++.|.....|..|++ |++++||.|++|++.|.
T Consensus         5 ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~   80 (107)
T 1wjp_A            5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHER-LC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFK   80 (107)
T ss_dssp             CCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHH-HH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECS
T ss_pred             cccCcccCCCcCeECCCCCCccCCHHHHHHHHH-HC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhC
Confidence            456788999999999999999999999999998 67  479999999999999999999996 99999999999999999


Q ss_pred             CchhHHhhhh-ccc-CCcccCC
Q psy2875          96 LKSNLSKHVR-HHM-ENVKQCK  115 (693)
Q Consensus        96 ~~~~L~~H~~-~h~-~~~~~C~  115 (693)
                      +...|..|++ +|. +++|.+.
T Consensus        81 ~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           81 SSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             SHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999997 787 6777654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=2.4e-18  Score=139.45  Aligned_cols=82  Identities=32%  Similarity=0.631  Sum_probs=78.3

Q ss_pred             cccCCCCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhh
Q psy2875         420 FHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       420 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      ||.|++|++.|.+...|..|+++|.+++||.|+.|++.|.+...|..|+++|++++||.|++|++.|.+.+.|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy2875         500 ET  501 (693)
Q Consensus       500 ~~  501 (693)
                      +|
T Consensus        81 ~g   82 (82)
T 2kmk_A           81 TG   82 (82)
T ss_dssp             C-
T ss_pred             CC
Confidence            76

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=4.8e-18  Score=141.94  Aligned_cols=87  Identities=25%  Similarity=0.441  Sum_probs=65.0

Q ss_pred             cCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCC--CcccCCcCcccCCChhHHH
Q psy2875         444 EKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS--EMHNCDFCHLTFTTDNDLI  521 (693)
Q Consensus       444 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~~~f~~~~~L~  521 (693)
                      +++++|.|++|++.|.+...|..|+++|+++++|.|++|++.|.+...|..|+++|+++  +||.|++|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            45677777777777777777777777777777777777777777777777777777776  7777777777777777777


Q ss_pred             HHHh-hhcCC
Q psy2875         522 RHMR-SHEEY  530 (693)
Q Consensus       522 ~H~~-~H~~~  530 (693)
                      .|++ +|.++
T Consensus        83 ~H~~~~H~~~   92 (95)
T 2yt9_A           83 GHIKQVHSGP   92 (95)
T ss_dssp             HHHHHTSCCC
T ss_pred             HHHHHhcCCC
Confidence            7774 56553

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.73  E-value=2.6e-18  Score=141.95  Aligned_cols=87  Identities=23%  Similarity=0.501  Sum_probs=78.9

Q ss_pred             cccccCC--CCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHH
Q psy2875         418 RKFHKCT--QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH  495 (693)
Q Consensus       418 ~k~~~C~--~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H  495 (693)
                      +++|.|+  .|++.|.+...|..|+++|.++++|.|+.|++.|.+...|..|+++|++++||.|++|++.|.+.+.|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            5789998  59999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCc
Q psy2875         496 LILHETSEM  504 (693)
Q Consensus       496 ~~~H~~~~~  504 (693)
                      +++|+|+++
T Consensus        82 ~~~H~~~k~   90 (90)
T 1a1h_A           82 TKIHLRQKD   90 (90)
T ss_dssp             HGGGGC---
T ss_pred             HHHhcccCC
Confidence            999998763

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=5.2e-18  Score=146.02  Aligned_cols=86  Identities=28%  Similarity=0.485  Sum_probs=56.8

Q ss_pred             hccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHH
Q psy2875         442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLI  521 (693)
Q Consensus       442 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~  521 (693)
                      .|++++||.| .|++.|.+...|..|+++|.++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            3566666666 666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhhhc
Q psy2875         522 RHMRSHE  528 (693)
Q Consensus       522 ~H~~~H~  528 (693)
                      .|+++|+
T Consensus        83 ~H~~~~~   89 (110)
T 2csh_A           83 RHVTSCT   89 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            6666664

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=9.1e-18  Score=140.22  Aligned_cols=87  Identities=30%  Similarity=0.563  Sum_probs=76.6

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCC-CCcccccccccccCChHhHH
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEY-HTKHTCDICGEKFINDLKLK  550 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~-~~~~~C~~C~~~f~~~~~L~  550 (693)
                      +++++|.|++|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++|+++ .+||.|++|++.|.+...|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999875 37889999999999988898


Q ss_pred             HHHhccCC
Q psy2875         551 AHIKIIHN  558 (693)
Q Consensus       551 ~H~~~~H~  558 (693)
                      .|++.+|.
T Consensus        83 ~H~~~~H~   90 (95)
T 2yt9_A           83 GHIKQVHS   90 (95)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHhcC
Confidence            88865664

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=7.9e-18  Score=144.84  Aligned_cols=87  Identities=24%  Similarity=0.523  Sum_probs=74.5

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhH
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKL  549 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L  549 (693)
                      .|++++||.| .|++.|.+...|..|+++|++++||.|++|++.|.+...|..|+++|+++ +||.|++|++.|.+...|
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI-KPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCC-CCEECSSSCCEESCHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCC-CCeeCCCCcchhcCHHHH
Confidence            5788888899 89999988888888988888888888888888888888888888888887 888888888888888888


Q ss_pred             HHHHhccCC
Q psy2875         550 KAHIKIIHN  558 (693)
Q Consensus       550 ~~H~~~~H~  558 (693)
                      ..|++++|.
T Consensus        82 ~~H~~~~~~   90 (110)
T 2csh_A           82 HRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            888885544

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=1.5e-17  Score=124.10  Aligned_cols=57  Identities=28%  Similarity=0.526  Sum_probs=29.5

Q ss_pred             CCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         446 VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       446 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      ||||.|++||++|.+.+.|..|+++|+|++||.|++||++|...+.|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            445555555555555555555555555555555555555555555555555555444

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.68  E-value=1.2e-17  Score=124.58  Aligned_cols=58  Identities=29%  Similarity=0.614  Sum_probs=40.5

Q ss_pred             CcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCC
Q psy2875          25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK   83 (693)
Q Consensus        25 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~   83 (693)
                      ||||+|++||++|...+.|.+|++ +|++++||.|++||++|...+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-HhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            667777777777777777777766 6777777777777777777777777777776653

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=7.3e-17  Score=136.09  Aligned_cols=84  Identities=27%  Similarity=0.580  Sum_probs=58.4

Q ss_pred             CCCccccCc--CcccccchhHHHHHHHhcCCCCceecc--ccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHH
Q psy2875         445 KVKVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCL--YCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDL  520 (693)
Q Consensus       445 ~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L  520 (693)
                      ..++|.|++  |++.|.....|..|+++|+++++|.|+  .|++.|.....|..|+++|++++||.|++||+.|.+...|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            345666765  777777777777777777777777774  4777777777777777777777777777777777777777


Q ss_pred             HHHHhhhc
Q psy2875         521 IRHMRSHE  528 (693)
Q Consensus       521 ~~H~~~H~  528 (693)
                      ..|+++|+
T Consensus        92 ~~H~~~H~   99 (100)
T 2ebt_A           92 ALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            77777665

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=5.5e-17  Score=133.61  Aligned_cols=81  Identities=26%  Similarity=0.502  Sum_probs=46.0

Q ss_pred             CccccCc--CcccccchhHHHHHHHhcCCCCceecc--ccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHH
Q psy2875         447 KVFHCPK--CPKLFRHESHLQNHVIVHDESEVHKCL--YCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIR  522 (693)
Q Consensus       447 ~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~  522 (693)
                      ++|.|++  |++.|.+...|..|+++|++++||.|+  .|++.|.+...|..|+++|++++||.|++||+.|.+...|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            4555555  555555555555555555555555554  355555555555555555555555555555555555555555


Q ss_pred             HHhhh
Q psy2875         523 HMRSH  527 (693)
Q Consensus       523 H~~~H  527 (693)
                      |+++|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            55554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.66  E-value=9.5e-17  Score=132.15  Aligned_cols=84  Identities=30%  Similarity=0.705  Sum_probs=77.8

Q ss_pred             CCcccccCC--CCcccCChhhHHHHhhhcCCCCCccccc--ccccccCChhHHHHHHHhhcCCCceeccccccccCCchh
Q psy2875          24 QERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSN   99 (693)
Q Consensus        24 ~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~   99 (693)
                      +.++|.|++  |++.|.+...|..|++ +|.++++|.|+  .|++.|.....|..|+++|++++||.|++|++.|.+.+.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   80 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH   80 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHH
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHH
Confidence            357899999  9999999999999998 89999999997  599999999999999999999999999999999999999


Q ss_pred             HHhhhhccc
Q psy2875         100 LSKHVRHHM  108 (693)
Q Consensus       100 L~~H~~~h~  108 (693)
                      |..|+++|.
T Consensus        81 l~~H~~~H~   89 (89)
T 2wbs_A           81 LALHMKRHF   89 (89)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHhhC
Confidence            999999874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=1.4e-17  Score=136.82  Aligned_cols=79  Identities=20%  Similarity=0.388  Sum_probs=41.5

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHh
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      +||.|++|++.|.+.+.|..|+++|++++||.|++||+.|.+...|..|+++|++  .+|.|+.|++.|.+...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~--~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHhhhHHHHH
Confidence            4555555555555555555555555555555555555555555555555555543  44555555555555555555554


Q ss_pred             c
Q psy2875         555 I  555 (693)
Q Consensus       555 ~  555 (693)
                      .
T Consensus        80 ~   80 (88)
T 1llm_C           80 R   80 (88)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.64  E-value=2.4e-17  Score=135.46  Aligned_cols=83  Identities=23%  Similarity=0.436  Sum_probs=77.7

Q ss_pred             CCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccccccccCChHhHHHHHhccCC-CcccccchhhcCChHHHHHHhh
Q psy2875         502 SEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDICGEKFINDLKLKAHIKIIHN-LFTCIHCGDTLNNAKDYASHLL  580 (693)
Q Consensus       502 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~-~~~C~~C~~~f~~~~~l~~H~~  580 (693)
                      ++||.|++||+.|.+...|..|+++|+++ +||.|++|++.|.+...|..|++++|. +|.|+.|++.|.+...|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~-~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE-KPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCC-CCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCC-CCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHH
Confidence            57999999999999999999999999998 999999999999999999999997665 8999999999999999999999


Q ss_pred             hhcCC
Q psy2875         581 IIHNI  585 (693)
Q Consensus       581 ~h~~~  585 (693)
                      .+|+.
T Consensus        80 ~~h~~   84 (88)
T 1llm_C           80 RLKKL   84 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=3.3e-16  Score=132.00  Aligned_cols=84  Identities=29%  Similarity=0.596  Sum_probs=79.2

Q ss_pred             cccccCCC--CccccCChHHHHHHHHhccCCCccccC--cCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHH
Q psy2875         418 RKFHKCTQ--CEESFKNKKHLKQHLLAHEKVKVFHCP--KCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLD  493 (693)
Q Consensus       418 ~k~~~C~~--C~k~f~~~~~L~~H~~~h~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~  493 (693)
                      .++|.|+.  |++.|.+...|..|+++|.++++|.|+  .|++.|.+...|..|+++|++++||.|++|++.|.....|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   92 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA   92 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHH
Confidence            57899996  999999999999999999999999996  69999999999999999999999999999999999999999


Q ss_pred             HHHHhhCC
Q psy2875         494 KHLILHET  501 (693)
Q Consensus       494 ~H~~~H~~  501 (693)
                      .|+++|++
T Consensus        93 ~H~~~H~~  100 (100)
T 2ebt_A           93 LHMKRHQN  100 (100)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhCC
Confidence            99999975

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.3e-16  Score=126.73  Aligned_cols=81  Identities=17%  Similarity=0.379  Sum_probs=73.8

Q ss_pred             cccccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCC---CcccccccccccCChhHHHHHHHhhcCCCceecccc
Q psy2875          14 QQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ---KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC   90 (693)
Q Consensus        14 ~l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~---k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C   90 (693)
                      +|..|+++|++++||.|++|++.|.+...|.+|++..|...   ++|.|++|++.|.....|..|+++|++++++.|..|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            57789999999999999999999999999999998555543   789999999999999999999999999999999999


Q ss_pred             cccc
Q psy2875          91 DKAF   94 (693)
Q Consensus        91 ~~~F   94 (693)
                      +.+|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=4.1e-16  Score=125.10  Aligned_cols=74  Identities=23%  Similarity=0.564  Sum_probs=67.9

Q ss_pred             cCCCcccccCC--CCcccCChhhHHHHhhhcCCCCCcccccc--cccccCChhHHHHHHHhhcCCCceeccccccccC
Q psy2875          22 SIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS   95 (693)
Q Consensus        22 ~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~   95 (693)
                      .+++++|.|+.  |++.|.+...|.+|++.+|+++++|.|++  |++.|.....|..|+++|++++||.|++||++|.
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            46789999997  99999999999999976799999999998  9999999999999999999999999999999884

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=9.1e-16  Score=123.09  Aligned_cols=70  Identities=26%  Similarity=0.455  Sum_probs=37.3

Q ss_pred             CCCccccCc--CcccccchhHHHHHHH-hcCCCCceeccc--cCccccchhhHHHHHHhhCCCCcccCCcCcccC
Q psy2875         445 KVKVFHCPK--CPKLFRHESHLQNHVI-VHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTF  514 (693)
Q Consensus       445 ~~~~~~C~~--C~k~f~~~~~L~~H~~-~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f  514 (693)
                      ++++|.|+.  |++.|.+...|..|++ +|++++||.|++  |++.|.+.+.|..|+++|++++||.|++||++|
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            445555544  5555555555555555 455555555555  555555555555555555555555555555554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.60  E-value=7.1e-16  Score=125.61  Aligned_cols=72  Identities=24%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             CcCcccccchhHHHHHHHhcCCCCceeccc--cCccccchhhHHHHHHhhCCCCcccCCc---CcccCCChhHHHHHHhh
Q psy2875         452 PKCPKLFRHESHLQNHVIVHDESEVHKCLY--CFKVFVHKAHLDKHLILHETSEMHNCDF---CHLTFTTDNDLIRHMRS  526 (693)
Q Consensus       452 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~~---C~~~f~~~~~L~~H~~~  526 (693)
                      +.|++.|.+.+.|..|+++|++++||+|++  |++.|.+.+.|..|+++|++   |.|+.   |++.|.+...|..|+++
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A            7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             TTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHh
Confidence            334444444444444444444444444433  44444444444444444433   44444   44444444444444433

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=4.7e-16  Score=127.04  Aligned_cols=77  Identities=18%  Similarity=0.282  Sum_probs=41.1

Q ss_pred             HHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCC----CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcc
Q psy2875         437 KQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDES----EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHL  512 (693)
Q Consensus       437 ~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~----~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~  512 (693)
                      .+|+++|++++||.|++|++.|.....|..|+++|+++    ++|.|++|++.|.....|..|+++|++++++.|+.||.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~   83 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGP   83 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCC
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCC
Confidence            34555555555555555555555555555555544433    45555555555555555555555555555555555554


Q ss_pred             c
Q psy2875         513 T  513 (693)
Q Consensus       513 ~  513 (693)
                      .
T Consensus        84 ~   84 (86)
T 1x6h_A           84 S   84 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.59  E-value=1.1e-15  Score=124.35  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             ceec--cccCccccchhhHHHHHHhhCCCCcccCCc--CcccCCChhHHHHHHhhhcCCCCcccccc---cccccCChHh
Q psy2875         476 VHKC--LYCFKVFVHKAHLDKHLILHETSEMHNCDF--CHLTFTTDNDLIRHMRSHEEYHTKHTCDI---CGEKFINDLK  548 (693)
Q Consensus       476 ~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~~C~~---C~~~f~~~~~  548 (693)
                      ||.|  +.||+.|.+.+.|..|+++|++++||.|++  |++.|.+...|..|+++|++    |.|++   |++.|.+...
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCCHHH
Confidence            5778  778888888888888888888888888877  88888888888888888876    77888   8888888888


Q ss_pred             HHHHHhccC
Q psy2875         549 LKAHIKIIH  557 (693)
Q Consensus       549 L~~H~~~~H  557 (693)
                      |..|++++|
T Consensus        77 l~~H~~~hh   85 (85)
T 2j7j_A           77 YLKHVAECH   85 (85)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            888877443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.2e-15  Score=127.43  Aligned_cols=74  Identities=23%  Similarity=0.391  Sum_probs=66.9

Q ss_pred             ccccCCCcccccCCCCcccCChhhHHHHhhhcC---CCCCcccccccccccCChhHHHHH-HHhhcCCCceecccccc
Q psy2875          19 QGKSIQERKFKCEMCPKSFDHKSNIRRHMAATH---DLQKKYKCKLCARMYRYKWNLKAH-LKMHKGPKIFTCAQCDK   92 (693)
Q Consensus        19 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H---~~~k~~~C~~C~~~f~~~~~L~~H-~~~H~~~~~~~C~~C~~   92 (693)
                      +..-+|++||.|++||+.|...+.|.+|++.+|   ++++||.|++||+.|...+.|..| +++|+|++||.|.++..
T Consensus        10 ~~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             TTCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             cccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            345679999999999999999999999997569   678999999999999999999999 89999999999998653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=3.1e-15  Score=119.31  Aligned_cols=70  Identities=30%  Similarity=0.622  Sum_probs=64.4

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceec
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC   87 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C   87 (693)
                      .+...+.+++||.|++|++.|.....|.+|++ +|+++++|.|++|++.|.....|..|+++|++++||.|
T Consensus         8 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A            8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCcCcCCCCCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34556778999999999999999999999998 89999999999999999999999999999999999987

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.56  E-value=5.7e-16  Score=137.34  Aligned_cols=66  Identities=18%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             hhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         461 ESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       461 ~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      .+.|..|+ .|++++||.|++||+.|...+.|..|+++|  ++||.|++||+.|.+...|.+|+++|++
T Consensus        60 ~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           60 SSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             HHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             HHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            33444443 344445555555555555555555555554  4455555555555555555555555544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=6e-15  Score=117.57  Aligned_cols=65  Identities=29%  Similarity=0.507  Sum_probs=38.8

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +.+++||.|++|++.|.....|..|+++|++++||.|++|++.|.....|..|+++|++++||.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34455666666666666666666666666666666666666666666666666666666655554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.8e-15  Score=123.77  Aligned_cols=67  Identities=18%  Similarity=0.195  Sum_probs=40.5

Q ss_pred             cCCCccccCcCcccccchhHHHHHHH-hc---CCCCceeccccCccccchhhHHHH-HHhhCCCCcccCCcC
Q psy2875         444 EKVKVFHCPKCPKLFRHESHLQNHVI-VH---DESEVHKCLYCFKVFVHKAHLDKH-LILHETSEMHNCDFC  510 (693)
Q Consensus       444 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H---~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C  510 (693)
                      +|++||.|++|+++|.+.+.|..|++ +|   ++++||.|++||+.|..++.|..| +++|+|++||.|.++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            45566666666666666666666665 35   345566666666666666666666 556666666666553

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.53  E-value=1.6e-15  Score=134.39  Aligned_cols=113  Identities=21%  Similarity=0.274  Sum_probs=83.4

Q ss_pred             cccCCCcccccCCCCcc--cCChhhHHHHhhhcCCCCCcccccccccccC------ChhHHHHHHHhhcCCCceeccccc
Q psy2875          20 GKSIQERKFKCEMCPKS--FDHKSNIRRHMAATHDLQKKYKCKLCARMYR------YKWNLKAHLKMHKGPKIFTCAQCD   91 (693)
Q Consensus        20 ~~~~~~~~~~C~~C~k~--f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~------~~~~L~~H~~~H~~~~~~~C~~C~   91 (693)
                      .+++|+++|.|...+..  |.....+..|.  ....++++.|++|++.|.      ....|..|+ .|++++||.|++||
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~--l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~   81 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQ--LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCL   81 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEECCHHHHHHHTT--SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTC
T ss_pred             hhcccccccccccCCeeeeecHHhhhcccc--CChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCC
Confidence            46788999988876644  33223223332  233456788999887776      455566665 68888889999999


Q ss_pred             cccCCchhHHhhhhcccCCcccCCccCcccCCchHHHHHHhhhCC
Q psy2875          92 KAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQN  136 (693)
Q Consensus        92 ~~F~~~~~L~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h~~  136 (693)
                      +.|.....|..|+++| ++||.|++|++.|.....|..|+++|+.
T Consensus        82 k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           82 MPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             CEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             cccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            9998888888888888 8888888888888888888888887763

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.5e-15  Score=125.91  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             ccchhHHHHHHHhcCCCCceeccccCcccc-chhhHHHHHHhhCC-CCcccCCcCcccCCChhHHHHHHhhhcCCCCcc
Q psy2875         458 FRHESHLQNHVIVHDESEVHKCLYCFKVFV-HKAHLDKHLILHET-SEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKH  534 (693)
Q Consensus       458 f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~-~~~~L~~H~~~H~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  534 (693)
                      +...+.+..|+++|+++++|.|++|++.|. ....|..|+++|++ ++||.|++|++.|.+...|.+|+++|+++ +|+
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~-kp~   83 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA-KPS   83 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS-CSS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC-CCC
Confidence            334444555555555555555555555555 55555555555555 55555555555555555555555555555 443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.6e-14  Score=120.09  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=46.8

Q ss_pred             ccccchhHHHHHHHhcCCCCceeccccCccc-cchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHH-HhhhcC
Q psy2875         456 KLFRHESHLQNHVIVHDESEVHKCLYCFKVF-VHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRH-MRSHEE  529 (693)
Q Consensus       456 k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f-~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~  529 (693)
                      .+|...+.|..|+++|.+++||.|++|++.| .+...|..|+++| +++||.|++||+.|.+...|..| +++|++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            3455556666666666666666666666666 6666666666666 66666666666666666666666 666654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.6e-14  Score=120.10  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             ccccCChHHHHHHHHhccCCCccccCcCcccc-cchhHHHHHHHhcCCCCceeccccCccccchhhHHHH-HHhhCCCCc
Q psy2875         427 EESFKNKKHLKQHLLAHEKVKVFHCPKCPKLF-RHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH-LILHETSEM  504 (693)
Q Consensus       427 ~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f-~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~  504 (693)
                      ...|.....|..|+++|.+++||.|++|++.| .+.+.|..|+++| +++||.|.+||+.|..++.|+.| +++|+++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            34667888899999999999999999999999 9999999999999 99999999999999999999999 889987655


Q ss_pred             ccC
Q psy2875         505 HNC  507 (693)
Q Consensus       505 ~~C  507 (693)
                      |.+
T Consensus        92 ~~~   94 (96)
T 2ctd_A           92 GPS   94 (96)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3e-15  Score=125.47  Aligned_cols=80  Identities=24%  Similarity=0.311  Sum_probs=71.7

Q ss_pred             ccCChHHHHHHHHhccCCCccccCcCccccc-chhHHHHHHHhcCC-CCceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         429 SFKNKKHLKQHLLAHEKVKVFHCPKCPKLFR-HESHLQNHVIVHDE-SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       429 ~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~-~~~~L~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      ++.....+..|+++|.++++|.|++|++.|. ....|..|+++|++ ++||.|++|++.|.++..|..|+++|++++|..
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            4555666788999999999999999999999 99999999999998 999999999999999999999999999999865


Q ss_pred             CC
Q psy2875         507 CD  508 (693)
Q Consensus       507 C~  508 (693)
                      -.
T Consensus        85 ~~   86 (98)
T 2gqj_A           85 AE   86 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=2.2e-14  Score=113.31  Aligned_cols=63  Identities=25%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcc
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMH  505 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  505 (693)
                      +.++++|.|+.|++.|.+.+.|..|+++|++++||+|++|++.|...+.|..|+++|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            445555666666666666666666666666555666666666666666666666555555554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-14  Score=113.87  Aligned_cols=65  Identities=31%  Similarity=0.693  Sum_probs=58.9

Q ss_pred             cccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCce
Q psy2875          20 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIF   85 (693)
Q Consensus        20 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~   85 (693)
                      ..++++++|+|++|++.|.+...|.+|++ +|+++++|.|++|++.|.....|..|+++|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            45678899999999999999999999998 899999999999999999999999999999999886

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.4e-14  Score=114.05  Aligned_cols=68  Identities=19%  Similarity=0.467  Sum_probs=60.5

Q ss_pred             cccccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCC-CcccccccccccCChhHHHHHHHhhcC
Q psy2875          14 QQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ-KKYKCKLCARMYRYKWNLKAHLKMHKG   81 (693)
Q Consensus        14 ~l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~-k~~~C~~C~~~f~~~~~L~~H~~~H~~   81 (693)
                      +|..|+++|++++||.|++|++.|.+...|.+|++..|+++ ++|.|++|++.|.....|..|+++|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            57789999999999999999999999999999987678875 899999999999999999999998654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.5e-14  Score=112.26  Aligned_cols=65  Identities=26%  Similarity=0.527  Sum_probs=55.0

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCC
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK   83 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~   83 (693)
                      +.++|++++||.|++|++.|.....|.+|++ +|.+++||.|++|++.|.....|..|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHH-GGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHH-hcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            4667888888888888888888888888887 7888888888888888888888888888888764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=2.6e-14  Score=112.16  Aligned_cols=60  Identities=27%  Similarity=0.478  Sum_probs=30.9

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +|++++||+|++|++.|.....|..|+++|++++||.|++|++.|.+...|.+|+++|++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            444555555555555555555555555555555555555555555555555555555544

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=5e-14  Score=109.88  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCc
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEM  504 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  504 (693)
                      |++++||.|++|++.|.+...|..|+++|++++||+|++|++.|.....|..|+++|++++|
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            44455555555555555555555555555555555555555555555555555555555444

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.3e-14  Score=115.56  Aligned_cols=64  Identities=19%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             HHHHhcCCCCceeccccCccccchhhHHHHHH-hhCCC-CcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         466 NHVIVHDESEVHKCLYCFKVFVHKAHLDKHLI-LHETS-EMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       466 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      .|+++|++++||.|++|++.|.+...|..|++ .|.++ +||.|++|++.|.+...|..|+++|++
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            34444555555555555555555555555543 34332 445555555555555555555554443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=6.8e-14  Score=109.09  Aligned_cols=64  Identities=22%  Similarity=0.372  Sum_probs=58.7

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKH  534 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  534 (693)
                      .|++++||+|++|++.|.....|..|+++|++++||.|++|++.|.+...|..|+++|+++ +|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~-~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD-MSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSS-SCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCC-CCC
Confidence            4788999999999999999999999999999999999999999999999999999999987 664

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-15  Score=119.40  Aligned_cols=71  Identities=20%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             hhcccccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceecccc
Q psy2875          12 QEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC   90 (693)
Q Consensus        12 ~~~l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C   90 (693)
                      .++|..|+++|++++||.|++||+.|.+.+.|..        +++|.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4678899999999999999999999999888765        6789999999999999999999999999999999887

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=111.48  Aligned_cols=51  Identities=24%  Similarity=0.565  Sum_probs=23.2

Q ss_pred             CCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHH
Q psy2875         445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKH  495 (693)
Q Consensus       445 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H  495 (693)
                      +.++|.|++|+++|.+.+.|..|+++|++++||.|++|+++|.+++.|..|
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H   75 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH   75 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHH
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHh
Confidence            334444444444444444444444444444444444444444444444444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=111.12  Aligned_cols=62  Identities=26%  Similarity=0.489  Sum_probs=38.0

Q ss_pred             cccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHH-HhhcCC
Q psy2875          20 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHL-KMHKGP   82 (693)
Q Consensus        20 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~-~~H~~~   82 (693)
                      .++.+.++|.|++||+.|.+.+.|.+|++ +|++++||.|++|+++|.....|..|+ ++|++|
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            34555566666666666666666666665 566666666666666666666666664 345544

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=7.5e-14  Score=107.42  Aligned_cols=63  Identities=29%  Similarity=0.599  Sum_probs=51.0

Q ss_pred             ccccCCCcccccCCCCcccCChhhHHHHhhhcC-CCCCcccccccccccCChhHHHHHHHhhcC
Q psy2875          19 QGKSIQERKFKCEMCPKSFDHKSNIRRHMAATH-DLQKKYKCKLCARMYRYKWNLKAHLKMHKG   81 (693)
Q Consensus        19 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H-~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~   81 (693)
                      +++|+|++||.|++|++.|.+.+.|..|++..| ++++||.|++||+.|...+.|..|+++|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            356788888888888888888888888887447 678888888888888888888888888765

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.3e-13  Score=106.15  Aligned_cols=59  Identities=20%  Similarity=0.579  Sum_probs=26.0

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHh-h-CCCCcccCCcCcccCCChhHHHHHHhhhc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLIL-H-ETSEMHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H-~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      +|++++||.|+.|++.|.+.+.|..|+++ | .+++||.|++||+.|.+...|..|+++|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            34444444444444444444444444443 3 24444444444444444444444444443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.9e-13  Score=101.74  Aligned_cols=53  Identities=30%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             CccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhh
Q psy2875         447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       447 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      +||.|++|++.|.+.+.|..|+++|++++||.|++|++.|...+.|..|+++|
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            44444444444444444444444444444444444444444444444444444

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.3e-15  Score=120.08  Aligned_cols=70  Identities=13%  Similarity=0.234  Sum_probs=44.4

Q ss_pred             hHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         462 SHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       462 ~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      +.|..|+++|++++||.|++||+.|...+.|..       ++||.|++||+.|.+...|..|+++|+++ +||.|++|
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~-~~~~C~~C   73 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGK-KTSGPSSG   73 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCC-CCSSCCCC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCC-CCCCCCCC
Confidence            445556666666666666666666666665554       56666666666666666666666666665 66666665

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.6e-13  Score=102.16  Aligned_cols=55  Identities=29%  Similarity=0.562  Sum_probs=28.7

Q ss_pred             CCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhc
Q psy2875         474 SEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       474 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      ++||+|++|++.|.+...|..|+++|++++||.|++||+.|.+...|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4455555555555555555555555555555555555555555555555555543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.37  E-value=5.4e-13  Score=99.18  Aligned_cols=54  Identities=28%  Similarity=0.548  Sum_probs=25.3

Q ss_pred             cccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         449 FHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       449 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      |.|++|++.|.+.+.|..|+++|++++||.|++|++.|.+.+.|..|+++|+++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            444444444444444444444444444444444444444444444444444443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=3.9e-13  Score=105.72  Aligned_cols=66  Identities=27%  Similarity=0.594  Sum_probs=43.8

Q ss_pred             hHHHHhhhcCCCCCccccc--ccccccCChhHHHHHHHhhcCCCceeccccccccCCchhHHhhhhcc
Q psy2875          42 NIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH  107 (693)
Q Consensus        42 ~L~~H~~~~H~~~k~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~F~~~~~L~~H~~~h  107 (693)
                      .|..|+..+|+++++|.|+  .|++.|.....|..|+++|++++||.|++||+.|.....|..|+++|
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            4455555566667777775  47777777777777777777777777777777777777777777665

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.34  E-value=7.8e-13  Score=98.29  Aligned_cols=56  Identities=30%  Similarity=0.602  Sum_probs=41.0

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCC
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK   83 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~   83 (693)
                      ||.|++|++.|.+.+.|..|++ +|++++||.|++||+.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5777777777777777777776 6777777777777777777777777777776654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=104.77  Aligned_cols=62  Identities=21%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCC---CCceeccccCccccchhhHHHHH-HhhCCCCc
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDE---SEVHKCLYCFKVFVHKAHLDKHL-ILHETSEM  504 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~---~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~  504 (693)
                      |++++||.|++|++.|.+...|..|+++|++   +++|.|++|++.|.....|..|+ +.|.++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            4455555555555555555555555555543   45555555555555555555555 23444433

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=9.1e-13  Score=105.07  Aligned_cols=65  Identities=20%  Similarity=0.264  Sum_probs=43.8

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCC---CCcccCCcCcccCCChhHHHHHHhhhcCCCCccc
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHET---SEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHT  535 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~---~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  535 (693)
                      |++++||+|++|++.|.....|..|+++|++   ++||.|++||+.|.+...|..|++.++...+|..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            6677777777777777777777777777764   6777777777777777777777743333225443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=2e-12  Score=97.16  Aligned_cols=49  Identities=27%  Similarity=0.588  Sum_probs=24.2

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHH
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHL  496 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~  496 (693)
                      ||.|++|++.|.+.+.|..|+++|++++||.|++|++.|.+.+.|..|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            4445555555555555555554444444444444444444444444443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.1e-12  Score=97.02  Aligned_cols=55  Identities=29%  Similarity=0.605  Sum_probs=35.6

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHH-hhhcC
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHM-RSHEE  529 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~  529 (693)
                      +||.|++|++.|.+.+.|..|+++|++++||.|++||+.|.+...|..|+ ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            35666666666666666666666666666666666666666666666665 45554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=2.9e-12  Score=100.61  Aligned_cols=57  Identities=23%  Similarity=0.534  Sum_probs=24.2

Q ss_pred             cCCCCceecc--ccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhh
Q psy2875         471 HDESEVHKCL--YCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       471 H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H  527 (693)
                      |.+++||.|+  .|++.|.....|..|+++|++++||.|++||+.|.+...|.+|+++|
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            3344444443  24444444444444444444444444444444444444444444433

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=7.3e-12  Score=103.99  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=13.6

Q ss_pred             ccCCcCcccCCChhHHHHHHhhhcCCCCcccc
Q psy2875         505 HNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTC  536 (693)
Q Consensus       505 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C  536 (693)
                      |.|++||+.|.+...|..|+++|+++ +||.|
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C   93 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTGE-KSGPS   93 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHTC-CCCSS
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCCC-CCCCC
Confidence            44444444444444444444444444 44444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=102.58  Aligned_cols=65  Identities=20%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             CCCccccCcCcccccchhHHHHHHHh-cCCCCc--------eeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         445 KVKVFHCPKCPKLFRHESHLQNHVIV-HDESEV--------HKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       445 ~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~--------~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +...|.|+.|++.|.+...|..|+++ |.++++        |.|++|++.|.....|..|+++|+|++||.|+.
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            34458899999999999999999998 999888        999999999999999999999999999999963

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=9.4e-12  Score=95.48  Aligned_cols=57  Identities=21%  Similarity=0.201  Sum_probs=32.0

Q ss_pred             CCCccccCcCcccccchhHHHHHHHhcCCCCceecc-ccCccccchhhHHHHHHhhCCCC
Q psy2875         445 KVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCL-YCFKVFVHKAHLDKHLILHETSE  503 (693)
Q Consensus       445 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~-~C~k~f~~~~~L~~H~~~H~~~~  503 (693)
                      +++||.|++|++.|. .+.|..|+++ ++++||+|+ .||+.|..++.|..|+++|...+
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            445555555555555 5555555555 555555555 55555555555555555554443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=95.11  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=46.3

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCCCcccCC-cCcccCCChhHHHHHHhhhcCC
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD-FCHLTFTTDNDLIRHMRSHEEY  530 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~-~C~~~f~~~~~L~~H~~~H~~~  530 (693)
                      .+++||.|++|++.|. .+.|..|+++ ++++||.|+ .||+.|...+.|..|+++|.+.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            4667888888888888 8888888888 888888888 8888888888888888887665

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.3e-11  Score=85.73  Aligned_cols=45  Identities=22%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGG-GTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhh-hcCCCCCCCCCCC
Confidence            46777777777777777777777777777776 7777777777766

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.16  E-value=2e-11  Score=86.05  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGG-GGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHH-HcCCCCCcCCCCC
Confidence            46777777777777777777777777777776 6777777777766

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.2e-11  Score=85.85  Aligned_cols=45  Identities=29%  Similarity=0.490  Sum_probs=33.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHH-HTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46777777777777777777777777777776 6777777777766

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.15  E-value=2.2e-11  Score=85.88  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=34.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGG-GSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777777888888888888888888888876 7777777777776

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2e-11  Score=86.04  Aligned_cols=45  Identities=27%  Similarity=0.427  Sum_probs=35.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHT-TTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHh-hcCCCCCCCCCCC
Confidence            47777888888888888888888888888876 7777788888776

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2e-11  Score=86.08  Aligned_cols=45  Identities=20%  Similarity=0.424  Sum_probs=33.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHG-GGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHH-HhcCCCCCCCCCC
Confidence            46777777777777777777777777777776 6777777777766

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=85.97  Aligned_cols=45  Identities=24%  Similarity=0.419  Sum_probs=33.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHH-TTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777777777777777777777777777776 7777777777766

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.2e-11  Score=85.80  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHH-HCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHH-hcCCCCCCCCCCC
Confidence            46677777777777777777777777777776 6777777777766

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.4e-11  Score=85.66  Aligned_cols=45  Identities=22%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGG-GTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777888888888888888888888888876 7777788888776

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.2e-11  Score=85.80  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=34.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHT-TTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777777777888888888877777777776 7777777777776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.9e-11  Score=85.22  Aligned_cols=45  Identities=27%  Similarity=0.379  Sum_probs=35.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHT-TTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777888888888888888888888888876 7788888888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=85.73  Aligned_cols=45  Identities=24%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHH-HTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46677777777777777777777777777776 6777777777765

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=85.38  Aligned_cols=45  Identities=20%  Similarity=0.287  Sum_probs=34.0

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHT-TTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46777777777777777777777777777776 6777777777766

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=85.35  Aligned_cols=45  Identities=24%  Similarity=0.421  Sum_probs=34.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHT-TTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            46777777777777777777777777777776 7777777777776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.6e-11  Score=85.49  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHG-GGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            46777777777777777777777777777776 7777777777766

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-11  Score=86.17  Aligned_cols=42  Identities=19%  Similarity=0.142  Sum_probs=18.1

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      ++|++++||.|++||+.|.+.+.|..|+++|++++||.|++|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            334444444444444444444444444444444444444433

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.14  E-value=2.3e-11  Score=85.71  Aligned_cols=45  Identities=18%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHH-HHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            35666666666666666666666666666665 5666666666655

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=86.79  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=27.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|.+.+.|..|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHH-HHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHH-HHcCCCCCCCCCC
Confidence            45566666666666666666666666666655 5666666666555

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.4e-11  Score=85.59  Aligned_cols=45  Identities=27%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHH-HCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46677777777777777777777777777776 6777777777766

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.6e-11  Score=85.46  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=33.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHT-TTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46677777777777777777777777777776 6777777777766

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=3.2e-11  Score=84.99  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHT-TTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36777777778888888888887777888876 7777777777776

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=86.69  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=18.9

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             cCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444443

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.9e-11  Score=85.18  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||.|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGG-GGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            5667777777777777777777777777766 6777777777665

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=85.55  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHG-GGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            36666777777777777777777777777765 6677777777665

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.1e-11  Score=85.97  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHH-HHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46666777777777777777777777777765 6666667766665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3e-11  Score=85.14  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGG-GGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            36777777788888888888888888888876 7777777777776

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.8e-11  Score=85.27  Aligned_cols=45  Identities=27%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHH-HHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            35666666666666666666666666666665 6666666666665

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.13  E-value=2.9e-11  Score=85.17  Aligned_cols=45  Identities=22%  Similarity=0.352  Sum_probs=34.1

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGG-GGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777777777777777777777777777776 6777777777766

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=86.61  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=16.9

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||+|++||+.|...+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.8e-11  Score=85.25  Aligned_cols=45  Identities=22%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHT-TTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            46777777777777777777777777777776 7777777777766

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.4e-11  Score=86.80  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=18.1

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +++|++++||+|++||+.|.+.+.|..|+++|++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             ccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            334444444444444444444444444444444444444443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.13  E-value=1.5e-11  Score=86.66  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=9.6

Q ss_pred             CCCcccCCcCcccCCChhHHHHHHhhh
Q psy2875         501 TSEMHNCDFCHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       501 ~~~~~~C~~C~~~f~~~~~L~~H~~~H  527 (693)
                      +++||.|++||+.|.+...|.+|+++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKLH   35 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHHH
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHHc
Confidence            333333333333333333333333333

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=86.72  Aligned_cols=41  Identities=20%  Similarity=0.224  Sum_probs=16.2

Q ss_pred             HhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccc
Q psy2875         497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI  538 (693)
Q Consensus       497 ~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~  538 (693)
                      ++|++++||.|++||+.|.+...|..|+++|+++ +||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-k~~~C~~   45 (46)
T 2ytn_A            5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGE-KPSGPSS   45 (46)
T ss_dssp             CCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCC-CCCSCCC
T ss_pred             cCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCC-CCCCCCC
Confidence            3333333444444444444444444444444333 3444433

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2.2e-11  Score=84.96  Aligned_cols=44  Identities=30%  Similarity=0.391  Sum_probs=26.8

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||+|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHH-HHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            4555666666666666666666666666655 5666666666555

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.13  E-value=2.5e-11  Score=85.54  Aligned_cols=45  Identities=22%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHT-GGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            36666677777777777777777777777765 6666666766665

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.13  E-value=2.5e-11  Score=85.58  Aligned_cols=44  Identities=25%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHH-HHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            5666666666666666666666666666665 5666666666665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-11  Score=86.10  Aligned_cols=42  Identities=19%  Similarity=0.179  Sum_probs=17.9

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +++|++++||.|++||+.|.+.+.|..|+++|++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             SCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             ccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            334444444444444444444444444444444444444443

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.12  E-value=1.5e-11  Score=86.70  Aligned_cols=43  Identities=19%  Similarity=0.082  Sum_probs=18.7

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||.|++||+.|.+.+.|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444433

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.8e-11  Score=85.26  Aligned_cols=45  Identities=27%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGG-GGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46667777777777777777777777777766 6777777777665

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.5e-11  Score=86.64  Aligned_cols=41  Identities=24%  Similarity=0.291  Sum_probs=16.8

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||+|++||+.|...+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             cCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.3e-11  Score=85.73  Aligned_cols=45  Identities=22%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGG-GGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46777777888888888888888888888876 7777777777776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.6e-11  Score=86.58  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=12.0

Q ss_pred             hhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       498 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +|++++||.|++||+.|.+...|.+|+++|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSG   37 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCS
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCC
Confidence            33333333333333333333333333333333

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.4e-11  Score=85.60  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHH-HHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHH-HcCCCCCCCCCCC
Confidence            35666666666666666666666666666665 5666666666665

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.7e-11  Score=85.39  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=30.4

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHH-HHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHH-HcCCCCCCCCCCC
Confidence            35666666677777777777777777777765 6666666666665

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=86.33  Aligned_cols=41  Identities=20%  Similarity=0.151  Sum_probs=17.1

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||+|++||+.|.+.+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2e-11  Score=86.08  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=16.8

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=86.38  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=14.8

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      +|++++||+|++|++.|...+.|..|+++|++++||.|+
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS   44 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence            333333333333333333333333333333333333333

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.6e-11  Score=85.50  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHH-HHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHH-HHCCCCCCCCCCC
Confidence            35666666666777667666666666666665 6666666666665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.8e-11  Score=86.27  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=18.0

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      ++|++++||+|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344444444444444444444444444444444444444433

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=86.29  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=16.9

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.12  E-value=2.1e-11  Score=85.96  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=24.3

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE-KPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSS-SCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCC-CCcCCCCC
Confidence            445555555555555555555555555555555555 55555554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.12  E-value=1.8e-11  Score=86.33  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=15.8

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      ++|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ema_A            5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred             cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3333333333333333333333333333333333333333

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.5e-11  Score=86.66  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=16.1

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++||+.|...+.|..|+++|+|++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            33333333333333333333333333333333333333333

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2e-11  Score=86.04  Aligned_cols=43  Identities=21%  Similarity=0.213  Sum_probs=18.2

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||+|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444433

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.8e-11  Score=86.31  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=17.0

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||+|++|++.|...+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             cCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.3e-11  Score=85.75  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=25.8

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||.|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHH-HHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            5555556666666666666666666666655 5555555555554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.11  E-value=2.2e-11  Score=85.83  Aligned_cols=44  Identities=18%  Similarity=0.192  Sum_probs=23.5

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      |+++|++++||.|++||+.|.+...|.+|+++|+++ +||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE-KPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSC-CCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCC-CCCCCCCC
Confidence            444555555555555555555555555555555554 55555544

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.3e-11  Score=85.77  Aligned_cols=41  Identities=22%  Similarity=0.229  Sum_probs=16.5

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++||+.|...+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            33334444444444444444444444444444444444433

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.11  E-value=3.8e-11  Score=84.60  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHG-GGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            35677777777777777777777777777776 6777777777766

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=86.59  Aligned_cols=40  Identities=23%  Similarity=0.191  Sum_probs=15.6

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      ++|++++||.|++||+.|.+.+.|..|+++|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoo_A            5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS   44 (46)
T ss_dssp             CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred             CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence            3333333333333333333333333333333333333333

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.8e-11  Score=86.31  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=17.0

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++||+.|.+.+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=85.94  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=12.1

Q ss_pred             hhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       498 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +|++++||.|++||+.|.+...|..|+++|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eov_A            6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG   37 (46)
T ss_dssp             CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSC
T ss_pred             CCCCCCCccCCccChhhCCHHHHHHHHHhcCC
Confidence            33333333333333333333333333333333

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.4e-11  Score=84.87  Aligned_cols=45  Identities=22%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHT-TSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHH-hhCCCCCCCCCCC
Confidence            36777788888888888888888888888876 7777778877776

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.9e-11  Score=84.51  Aligned_cols=45  Identities=27%  Similarity=0.355  Sum_probs=33.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHH-HSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            36677777777777777777777777777776 6777777777766

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.9e-11  Score=86.12  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=15.4

Q ss_pred             hhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccccc
Q psy2875         498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDI  538 (693)
Q Consensus       498 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~  538 (693)
                      +|++++||.|++||+.|.+...|..|+++|+++ +||.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~~   45 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE-KPSGPSS   45 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCC-CSSSCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCC-CCCCCCC
Confidence            333333333333333333333333333333333 3333333

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.3e-11  Score=85.70  Aligned_cols=44  Identities=18%  Similarity=0.187  Sum_probs=20.6

Q ss_pred             HHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         467 HVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       467 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      |+++|++++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444444444444444444444444444444444444444443

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.7e-11  Score=86.46  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=15.7

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +|++++||.|++||+.|.+.+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3333333333333333333333333333333333333333

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.9e-11  Score=86.14  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=11.5

Q ss_pred             hCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         499 HETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       499 H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      |++++||.|++||+.|.+...|.+|+++|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG   37 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTTTTT
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHhCC
Confidence            3333333333333333333333333333333

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-11  Score=86.01  Aligned_cols=41  Identities=22%  Similarity=0.198  Sum_probs=16.6

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++||+.|.+.+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            33344444444444444444444444444444444444433

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.3e-11  Score=85.69  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=26.3

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||.|++||+.|.+.+.|.+|++ +|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHH-HHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            5555666666666666666666666666655 5555566666554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.11  E-value=2.2e-11  Score=85.84  Aligned_cols=42  Identities=19%  Similarity=0.118  Sum_probs=17.6

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +++|++++||.|++|++.|.+.+.|..|+++|++++||.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            333444444444444444444444444444444444444443

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.5e-11  Score=84.23  Aligned_cols=45  Identities=22%  Similarity=0.389  Sum_probs=34.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHT-TTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46777777777777777777777777777776 7777777777764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.2e-11  Score=85.87  Aligned_cols=43  Identities=19%  Similarity=0.115  Sum_probs=20.2

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            3444444444444444444444444444444444444444443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.1e-11  Score=85.90  Aligned_cols=41  Identities=20%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||+|++|++.|...+.|..|+++|++++||.|+.
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            33444444444444444444444444444444444444433

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.3e-11  Score=85.73  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTH-HHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            5555666666666666666666666666655 5555566666554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.5e-11  Score=84.16  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++||+.|...+.|.+|++.+|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4666777777777777777777777777776546677777777665

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.6e-11  Score=85.49  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=18.7

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444433

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.5e-11  Score=85.51  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=17.3

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      ++|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            33444444444444444444444444444444444444443

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.7e-11  Score=85.40  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      |+++|++++||.|++||+.|.+...|.+|+++|+++ +||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE-KPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCS-CSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCC-CCCCCCCC
Confidence            344555555555555555555555555555555554 55555554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.6e-11  Score=86.50  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=15.8

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3333333333333333333333333333333333333333

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.6e-11  Score=85.49  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=23.7

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE-NPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTS-CCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCC-CCCCCCCC
Confidence            444555555555555555555555555555555554 55555554

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.6e-11  Score=85.43  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE-KPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTC-SCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCC-CCCCCCCC
Confidence            445555555555555555555555555555555554 55555554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=5.5e-11  Score=87.02  Aligned_cols=48  Identities=17%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCC
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRY   68 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~   68 (693)
                      .|++++||.|++|++.|.....|.+|++.+|++++||.|++|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            355666666666666666666666665445666666666666666653

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=4e-11  Score=84.50  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||+|++||+.|...+.|.+|++ +|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQV-LHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHH-HHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            5566666666666666666666666666665 5666666666655

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=85.91  Aligned_cols=43  Identities=21%  Similarity=0.135  Sum_probs=18.9

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||+|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            3344444444444444444444444444444444444444443

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.2e-11  Score=84.96  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=29.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHH-HHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHH-HcCCCCCCCCCCC
Confidence            35666666666666666666666666666665 5666666666655

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.1e-11  Score=83.93  Aligned_cols=44  Identities=27%  Similarity=0.495  Sum_probs=40.0

Q ss_pred             HhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceecccc
Q psy2875          46 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC   90 (693)
Q Consensus        46 H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C   90 (693)
                      |++ +|++++||.|++||+.|...+.|..|+++|++++||.|++|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCS-CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCC-CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            666 89999999999999999999999999999999999999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3e-11  Score=85.15  Aligned_cols=44  Identities=14%  Similarity=0.086  Sum_probs=25.6

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      |+++|++++||.|++||+.|.+...|.+|+++|+++ +||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ-RPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSC-CCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCC-CCCCCCCC
Confidence            445555555566666666666666666666555555 55655554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.8e-11  Score=86.27  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=18.1

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3334444444444444444444444444444444444444433

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.6e-11  Score=84.69  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHH-HHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            4555555556666666655555555555555 5555555555554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.08  E-value=3.4e-11  Score=84.82  Aligned_cols=40  Identities=23%  Similarity=0.193  Sum_probs=15.7

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +|++++||+|++|++.|.+.+.|..|+++|++++||.|++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3333333333333333333333333333333333333333

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.1e-11  Score=85.03  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=16.2

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      ++|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            3334444444444444444444444444444444444443

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.07  E-value=1.8e-11  Score=92.43  Aligned_cols=54  Identities=15%  Similarity=0.367  Sum_probs=41.1

Q ss_pred             ccccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHH
Q psy2875          15 QIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNL   72 (693)
Q Consensus        15 l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L   72 (693)
                      |..|+++|+|++||+|++||+.|...+.|.   + +|++++||.|++||+.|....++
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~-~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---L-FDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---H-EETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---h-hcCCCCCEECCCCCCccccCccc
Confidence            567788888888888888888888777775   3 77788888888888887765543

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=9.2e-11  Score=85.78  Aligned_cols=44  Identities=23%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             CCCCceeccccCccccchhhHHHHHH-hhCCCCcccCCcCcccCC
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLI-LHETSEMHNCDFCHLTFT  515 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~  515 (693)
                      ++++||.|++|++.|.....|..|++ +|++++||.|++||+.|.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            34444444444444444444444443 444444444444444443

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=4.2e-11  Score=84.37  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=27.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHH-HHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHH-HHcCCCCCCCCCC
Confidence            5556666666666666666666666666665 5666666666555

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.1e-11  Score=85.05  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=15.9

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      +|++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            3333334444444444444444444444443333443333

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=9.5e-11  Score=91.55  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=10.2

Q ss_pred             CcccccchhHHHHHHHhcCCCCceec
Q psy2875         454 CPKLFRHESHLQNHVIVHDESEVHKC  479 (693)
Q Consensus       454 C~k~f~~~~~L~~H~~~H~~~~~~~C  479 (693)
                      |++.|.....|..|+++|++++||+|
T Consensus        25 C~k~f~~~~~L~~H~~~H~~~~~~~C   50 (72)
T 2epa_A           25 CGKTYFKSSHLKAHTRTHTGEKPFSC   50 (72)
T ss_dssp             TCCEESSHHHHHHHHHHHSSSCSEEC
T ss_pred             CccccCCHHHHHHHHHhcCCCCCccC
Confidence            33333333333333333333333333

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=8.5e-11  Score=91.82  Aligned_cols=58  Identities=28%  Similarity=0.544  Sum_probs=31.8

Q ss_pred             ccCCCcccccCC--CCcccCChhhHHHHhhhcCCCCCcccccc--cccccCChhHHHHHHHhh
Q psy2875          21 KSIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMH   79 (693)
Q Consensus        21 ~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~~~f~~~~~L~~H~~~H   79 (693)
                      .+++.++|.|+.  |++.|.....|.+|++ +|++++||.|++  |++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHH-HHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHH-hcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            344455555555  5555555555555554 555555555543  555555555555555443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.3e-11  Score=83.85  Aligned_cols=41  Identities=24%  Similarity=0.318  Sum_probs=17.8

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444444444444444444444444444444444444443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.4e-11  Score=84.67  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=10.0

Q ss_pred             hCCCCcccCCcCcccCCChhHHHHHHh
Q psy2875         499 HETSEMHNCDFCHLTFTTDNDLIRHMR  525 (693)
Q Consensus       499 H~~~~~~~C~~C~~~f~~~~~L~~H~~  525 (693)
                      |++++||.|++||+.|.+...|..|++
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhH
Confidence            333333333333333333333333333

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=8.3e-11  Score=82.82  Aligned_cols=45  Identities=22%  Similarity=0.393  Sum_probs=29.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHH-HHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            35666666667777777777776666666665 6666666666654

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.6e-10  Score=81.26  Aligned_cols=44  Identities=25%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHT-TTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            46777777778888888888888788888876 777777777763

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.8e-10  Score=81.00  Aligned_cols=44  Identities=20%  Similarity=0.404  Sum_probs=33.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGG-GGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            46777777777777777777777777777776 777777777753

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.02  E-value=1.5e-11  Score=92.95  Aligned_cols=49  Identities=16%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             HHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchh
Q psy2875         439 HLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKA  490 (693)
Q Consensus       439 H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~  490 (693)
                      |+++|++++||.|++||++|...+.|.   ++|++++||+|++||+.|....
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDE   53 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECT
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCc
Confidence            444445555555555555555444443   4455555555555555554443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.02  E-value=5.2e-11  Score=87.13  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             ccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcc
Q psy2875         456 KLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMH  505 (693)
Q Consensus       456 k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  505 (693)
                      +.|...+.|..|+++|++++||.|++||+.|...+.|..|+++|+|++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            44555555555555555555555555555555555555555555555554

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.02  E-value=1.6e-10  Score=79.54  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=29.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      |+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHG-GGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            4566777777777777777777777777766 67777777663

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.5e-10  Score=81.48  Aligned_cols=44  Identities=25%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      ++++|++++||+|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHT-TTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            4667777888888888888888888888876 7777778877776

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-10  Score=80.85  Aligned_cols=44  Identities=25%  Similarity=0.430  Sum_probs=32.9

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGG-GGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            46777777777777777777777777777776 777777777753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-10  Score=80.85  Aligned_cols=44  Identities=20%  Similarity=0.432  Sum_probs=36.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTT-TTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHH-hcCCCCCCCCCC
Confidence            46788888888888888888888888888887 788888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.02  E-value=8.8e-11  Score=80.85  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=15.7

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +|++++||+|++|++.|.+.+.|..|+++|++++||.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            34444444444444444444444444444444444433

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.9e-10  Score=80.88  Aligned_cols=44  Identities=25%  Similarity=0.437  Sum_probs=33.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHT-TTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhH-hcCCCCCCCCCC
Confidence            46777777888888888888888888888876 777777777753

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2e-10  Score=79.01  Aligned_cols=41  Identities=17%  Similarity=0.448  Sum_probs=27.2

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      |+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHH-HTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHH-HhCCCCCCCC
Confidence            4556666666666666666666666666665 6666666665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=81.11  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHT-TTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            46777777788888888888888888888876 777777777753

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.1e-10  Score=80.74  Aligned_cols=44  Identities=23%  Similarity=0.473  Sum_probs=33.4

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHT-TTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            46777777778888888888887777877776 777777777753

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2e-10  Score=80.76  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=32.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHG-GGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            46777777777777777777777777777776 677777777753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.2e-10  Score=80.62  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHT-TTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            46777777788888888888888888888876 777777777763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2e-10  Score=80.75  Aligned_cols=44  Identities=27%  Similarity=0.409  Sum_probs=34.1

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGG-GTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHH-hcCCCCCcCCCC
Confidence            46777888888888888888888888888876 777778887764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.01  E-value=1.4e-10  Score=81.68  Aligned_cols=43  Identities=26%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHH-HHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            36666677777777777777777777777765 66666666665

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.01  E-value=1e-10  Score=82.36  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=17.4

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            4 GSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1e-10  Score=82.35  Aligned_cols=40  Identities=20%  Similarity=0.147  Sum_probs=17.3

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||+|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2e-10  Score=80.74  Aligned_cols=44  Identities=30%  Similarity=0.457  Sum_probs=33.0

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|.+.+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHH-TSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            46777777777777777777777777777776 777777777753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.2e-10  Score=80.57  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHT-TTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            46777777788888888888888888888876 777777777753

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=81.14  Aligned_cols=44  Identities=23%  Similarity=0.490  Sum_probs=29.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHH-HHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            46666777777777777777777777777765 666666766653

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.4e-10  Score=80.43  Aligned_cols=44  Identities=25%  Similarity=0.391  Sum_probs=33.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHG-GGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHh-HhCCCCCCCCCC
Confidence            46777777888888888888888888888876 777777777753

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=81.18  Aligned_cols=43  Identities=28%  Similarity=0.468  Sum_probs=28.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHH-HHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHH-HcCCCCCCCCC
Confidence            35666666666666666666666666666665 66666666665

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=81.99  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=17.6

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.7e-10  Score=79.20  Aligned_cols=43  Identities=21%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++||+.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHT-TTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhh-hcCCCCCCCCC
Confidence            46777777788888888888888888888876 77777777774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.3e-10  Score=79.59  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=31.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHH-HTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHH-HhCCCCCCCCC
Confidence            46677777777777777777777777777776 67777777764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.8e-10  Score=81.09  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHH-HHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCC
Confidence            35666666666777767666666666666665 66666666665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=82.07  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||+|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A            4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             ccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=80.37  Aligned_cols=44  Identities=23%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHT-TTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            46777777778888888888888888888876 777777777753

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=81.76  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=17.3

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.3e-10  Score=79.59  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=33.3

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHT-TSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            46777888888888888888888888888876 77777777774

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=78.47  Aligned_cols=41  Identities=24%  Similarity=0.500  Sum_probs=32.0

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      |+++|++++||.|++||+.|...+.|.+|++ +|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            6777777888888888888888888888876 7777777776

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.9e-10  Score=79.07  Aligned_cols=43  Identities=14%  Similarity=0.430  Sum_probs=33.0

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|..|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQK-THAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGG-GGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCC
Confidence            46777777788888888888888888888876 77777777774

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.9e-10  Score=79.94  Aligned_cols=43  Identities=14%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHH-HCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            36777777777777777777777777777776 77777777775

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=81.61  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=18.3

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            34444444444444444444444444444444444444443

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.5e-10  Score=81.45  Aligned_cols=39  Identities=21%  Similarity=0.288  Sum_probs=16.3

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      ++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            334444444444444444444444444444444444443

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.5e-10  Score=80.34  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=28.1

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHH-HHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            35666666666666666666666666666665 66666666665

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=81.61  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=16.2

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      ++|++++||.|++|++.|.+.+.|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A            5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             CSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            334444444444444444444444444444444444443

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=81.36  Aligned_cols=42  Identities=19%  Similarity=0.229  Sum_probs=21.1

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|.+|+++|+++ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE-KPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTS-SCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCC-CCCCCC
Confidence            344445555555555555555555555555555444 555544

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=2.7e-10  Score=79.71  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=15.5

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcC
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFC  510 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C  510 (693)
                      ++++||.|++|++.|...+.|..|+++|++++||.|++|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             SSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            333334444444444333344444433433334443333

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=3.5e-10  Score=77.78  Aligned_cols=41  Identities=24%  Similarity=0.511  Sum_probs=32.5

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      |+++|++++||.|++|++.|...+.|.+|++ +|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            6677888888888888888888888888877 7778887776

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.3e-10  Score=81.73  Aligned_cols=24  Identities=42%  Similarity=0.595  Sum_probs=8.4

Q ss_pred             ceeccccCccccchhhHHHHHHhh
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      ||.|++|++.|...+.|..|+++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQKIH   35 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CEECCccCcccCCHHHHHHHHHHh
Confidence            333333333333333333333333

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.5e-10  Score=81.53  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=11.0

Q ss_pred             hCCCCcccCCcCcccCCChhHHHHHHhhhc
Q psy2875         499 HETSEMHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       499 H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      |++++||.|++||+.|.+...|..|+++|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHT   36 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhcC
Confidence            333333333333333333333333333333

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.3e-10  Score=81.74  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=16.9

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            3334444444444444444444444444444444444444

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.9e-10  Score=80.92  Aligned_cols=42  Identities=17%  Similarity=0.149  Sum_probs=22.9

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE-NPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSS-CCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCC-CCCCCC
Confidence            444555555555555555555555555555555554 555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.4e-10  Score=80.37  Aligned_cols=43  Identities=23%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHH-HHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHH-HcCCCCCCCCC
Confidence            46667777777777777777777777777766 67777777765

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=81.12  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=22.6

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGE-KPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCC-CCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC-CCCCCC
Confidence            444555555555555555555555555555555554 555554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.9e-10  Score=79.96  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCC-CCcccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDL-QKKYKCKL   61 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~   61 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++ ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            46777888888888888888888888888876 7877 78887763

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.5e-10  Score=81.42  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=16.1

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      |++++||.|++|++.|...+.|..|+++|++++||.|++
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            334444444444444444444444444444444444433

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.9e-10  Score=79.06  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHH-HCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhH-hcCCCCCCCCC
Confidence            46667777777777777777777777777776 67777777663

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=4.1e-10  Score=79.19  Aligned_cols=43  Identities=21%  Similarity=0.524  Sum_probs=33.0

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGG-GSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            36677777888888888888888888888876 77777777775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=81.16  Aligned_cols=42  Identities=19%  Similarity=0.198  Sum_probs=22.6

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGE-KPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCS-CCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCC-CCCCCC
Confidence            444555555555555555555555555555555554 555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.6e-10  Score=81.31  Aligned_cols=42  Identities=26%  Similarity=0.370  Sum_probs=19.7

Q ss_pred             HHHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCC
Q psy2875         467 HVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCD  508 (693)
Q Consensus       467 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  508 (693)
                      |+++|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            334444444444444444444444444444444444444443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.97  E-value=9.9e-11  Score=85.62  Aligned_cols=52  Identities=15%  Similarity=0.186  Sum_probs=48.3

Q ss_pred             CccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccc
Q psy2875         483 FKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHT  535 (693)
Q Consensus       483 ~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  535 (693)
                      ++.|.....|..|+++|++++||.|++||+.|.+.+.|..|+++|+++ +||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFA-KPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT-SCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccC-CCCC
Confidence            578899999999999999999999999999999999999999999998 8874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=2.9e-10  Score=79.57  Aligned_cols=42  Identities=19%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             cCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccc
Q psy2875          50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCD   91 (693)
Q Consensus        50 ~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~   91 (693)
                      .|++++||.|++|++.|...+.|..|+++|+++++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            344444444444444444444444444444444444444443

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.6e-10  Score=81.28  Aligned_cols=43  Identities=23%  Similarity=0.365  Sum_probs=25.6

Q ss_pred             ccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          19 QGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        19 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      +++|++++||.|++|++.|...+.|.+|++ +|++++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHT-HHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            455556666666666666666666666655 5555566666554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.7e-10  Score=81.23  Aligned_cols=40  Identities=23%  Similarity=0.269  Sum_probs=17.0

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A            4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             ccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            3334444444444444444444444444444444444444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=3.4e-10  Score=80.44  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=18.0

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCc
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCH  511 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~  511 (693)
                      .+++||.|++|++.|.....|..|+++|++++||.|++||
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            3344444444444444444444444444444444444444

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.9e-10  Score=80.04  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=16.1

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      ++|++++||+|++|++.|.+.+.|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            334444444444444444444444444444444444433

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.2e-10  Score=77.96  Aligned_cols=42  Identities=21%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             HhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceecc
Q psy2875          46 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA   88 (693)
Q Consensus        46 H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~   88 (693)
                      |++ +|++++||.|++|++.|...+.|..|+++|++++||.|+
T Consensus         1 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSS-GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCS-SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCc-CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566 899999999999999999999999999999999999884

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2e-10  Score=80.77  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=21.3

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE-KPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSS-CCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC-CCCCCC
Confidence            344455555555555555555555555555555544 555544

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.8e-10  Score=79.33  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=32.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHT-TSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            46777777777777777777777777777776 77777777775

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=80.71  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=25.2

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      |+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHH-HHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHH-hcCCCCCCCCC
Confidence            5555666666666666666666666666655 55555666554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.5e-10  Score=80.62  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=13.3

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      |++++||.|++|++.|...+.|..|+++|++++||.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPS   42 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            333333333333333333333333333333333333

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.3e-10  Score=80.54  Aligned_cols=42  Identities=21%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGE-KPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSS-CCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCC-CCCCCC
Confidence            344444555555555555555555555555555444 455543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2e-10  Score=80.87  Aligned_cols=41  Identities=15%  Similarity=0.217  Sum_probs=20.6

Q ss_pred             HHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         496 LILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       496 ~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      +++|++++||.|++||+.|.+...|.+|+++|+++ +||.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE-RPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSC-CSCTTS
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCC-CCCCCC
Confidence            34445555555555555555555555555555444 455544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.9e-10  Score=80.89  Aligned_cols=40  Identities=23%  Similarity=0.193  Sum_probs=17.6

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||+|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             ccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=80.63  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             HhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccccc
Q psy2875         497 ILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCDIC  539 (693)
Q Consensus       497 ~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~~C  539 (693)
                      ++|++++||.|++||+.|.+...|..|+++|+++ +||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE-KPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHC-CCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC-CCCCCCCC
Confidence            4556666666666666666666666666666665 66666655

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2e-10  Score=80.78  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=21.7

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE-KPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCS-CCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCC-CCCCCC
Confidence            444455555555555555555555555555555544 555554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.1e-10  Score=79.78  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=16.2

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      ++|++++||+|++|++.|...+.|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            334444444444444444444444444444444444433

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.95  E-value=3.9e-10  Score=77.51  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=28.5

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      |+++|++++||+|++||+.|...+.|.+|++ +|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            5566777777777777777777777777766 6777777665

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.6e-10  Score=80.18  Aligned_cols=43  Identities=16%  Similarity=0.423  Sum_probs=28.0

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHH-HHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            35666666666666666666666666666665 56666666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.3e-10  Score=79.58  Aligned_cols=40  Identities=18%  Similarity=0.200  Sum_probs=18.0

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            4 GSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            3444444444444444444444444444444444444444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=4.4e-10  Score=79.84  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=26.4

Q ss_pred             cCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccccccc
Q psy2875          22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCAR   64 (693)
Q Consensus        22 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~   64 (693)
                      +++++||.|++|++.|.....|.+|++ +|++++||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGG-GSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHH-hcCCCCCccCCCCCC
Confidence            455666666666666666666666665 566666666666654

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.6e-10  Score=79.31  Aligned_cols=41  Identities=20%  Similarity=0.227  Sum_probs=22.5

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCcccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTC  536 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C  536 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|+++ +||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGE-SGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCS-SSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCC-CCCCC
Confidence            444555555555555555555555555555555555 55555

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.94  E-value=2.5e-10  Score=78.48  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=15.7

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      +|++++||+|++||+.|...+.|..|+++|++++||.
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            3444444444444444444444444444444444443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.3e-10  Score=80.54  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=14.9

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCC-CCcccC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHET-SEMHNC  507 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C  507 (693)
                      +|++++||.|++|++.|...+.|..|+++|++ ++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            33333333333333333333333333333333 333333

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2e-10  Score=79.00  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=12.9

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCCCcc
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMH  505 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  505 (693)
                      |++++||+|++|++.|...+.|..|+++|++++||
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            33333333333333333333333333333333333

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.9e-10  Score=78.22  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      |+++|++++||+|++|++.|.+.+.|.+|++ +|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            4555556666666666666666666666655 5555555554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.8e-10  Score=79.29  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=15.9

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      ++|++++||.|++|++.|.+.+.|..|+++|++++||.
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            4 GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             cccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            33444444444444444444444444444444444443

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.9e-10  Score=79.97  Aligned_cols=42  Identities=29%  Similarity=0.518  Sum_probs=24.5

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      |+++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHH-HHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            5555555666666666666666666666655 55555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.8e-10  Score=80.02  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=24.4

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      |+++|++++||.|++|++.|.+...|..|+++|+++ +||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE-KSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHT-TCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCC-CCCCCC
Confidence            445555555555555666666555666665555555 555554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.7e-10  Score=80.12  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=14.5

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            33333333333333333333333333333333333333

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.2e-10  Score=78.39  Aligned_cols=44  Identities=20%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             cccccCCCcccccC--CCCcccCChhhHHHHhhhcCCCCCccccccc
Q psy2875          18 AQGKSIQERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLC   62 (693)
Q Consensus        18 h~~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   62 (693)
                      |.++|++++||+|+  +|++.|...+.|.+|++ +|++++||.|++|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            56677778888887  78888888888888876 7777778877776

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.1e-10  Score=78.02  Aligned_cols=41  Identities=22%  Similarity=0.485  Sum_probs=35.9

Q ss_pred             HhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceec
Q psy2875          46 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC   87 (693)
Q Consensus        46 H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C   87 (693)
                      |++ +|++++||.|++||+.|...+.|..|+++|++++||.|
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCC-CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             Ccc-ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            666 78888999999999999999999999999998888887

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=6.4e-10  Score=78.17  Aligned_cols=43  Identities=21%  Similarity=0.415  Sum_probs=37.7

Q ss_pred             HhhhcCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccc
Q psy2875          46 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ   89 (693)
Q Consensus        46 H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~   89 (693)
                      |++ +|++++||.|++|++.|.....|..|+++|++++||.|+.
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCC-CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCC-CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            565 8889999999999999999999999999999999998863

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=6.8e-10  Score=77.17  Aligned_cols=42  Identities=21%  Similarity=0.310  Sum_probs=27.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      |+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQA-LHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHH-HHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHH-HHCCCCCCCCC
Confidence            5566666666666666666666666666665 56666666663

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.4e-10  Score=79.63  Aligned_cols=43  Identities=16%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      .|+++|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            35556666666666666666666666666655 55555666553

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=4.2e-10  Score=78.29  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=11.8

Q ss_pred             hCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         499 HETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       499 H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      |++++||.|++||+.|.+...|..|+++|++
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALHAG   37 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHHTT
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHHCC
Confidence            3333333333333333333333333333333

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.1e-10  Score=78.32  Aligned_cols=42  Identities=17%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      .|+++|++++||+|++|++.|...+.|.+|++ +|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHH-HHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHH-HhCCCCCCCC
Confidence            35666666666666666666666666666665 6666666665

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.6e-10  Score=80.23  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=14.6

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            33333333333333333333333333333333333333

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.8e-10  Score=76.36  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      .|+++|++++||.|++|++.|...+.|..|++ +|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHG-GGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHh-HhcCCCCCCC
Confidence            46677777777777777777777777777776 6777777765

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.9e-10  Score=79.12  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=17.6

Q ss_pred             HHhcCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         468 VIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       468 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      +++|++++||.|++|++.|...+.|..|+++|++++||.|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444444443

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=9.3e-10  Score=76.91  Aligned_cols=42  Identities=26%  Similarity=0.451  Sum_probs=30.5

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      +.++|++++||+|++|++.|.....|.+|++ +|++++||.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHT-TTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHH-HhCCCCCCCCC
Confidence            4556777777777777777777777777776 67777777775

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=9.9e-10  Score=77.17  Aligned_cols=41  Identities=27%  Similarity=0.314  Sum_probs=26.1

Q ss_pred             ccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          19 QGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        19 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      +++|++++||+|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHH-HHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHH-HhCCCCCCCCC
Confidence            455666666666666666666666666665 56666666664

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.3e-10  Score=77.36  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=15.2

Q ss_pred             HhcCCCCceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         469 IVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       469 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      ++|++++||.|++|++.|...+.|..|+++|++++||.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             cccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            33334444444444444444444444444444443333

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=1.3e-09  Score=75.26  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=11.5

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      +||.|++|++.|...+.|..|+++|++++||.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQTHSDKSGP   40 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSS
T ss_pred             CCEECCCCCCeeCChHHHHHHHHhhCCCCCcc
Confidence            33333333333333333333333333333333

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.85  E-value=1.4e-09  Score=75.19  Aligned_cols=39  Identities=21%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCccccc
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK   60 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~   60 (693)
                      +|++++||.|++|++.|...+.|.+|++ +|++++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTL-QTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHH-HHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHH-hhCCCCCccCC
Confidence            4555555555555555555555555554 55555555554

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=8.1e-10  Score=78.40  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=15.9

Q ss_pred             cCCCCceecc--ccCccccchhhHHHHHHhhCCCCcccCCc
Q psy2875         471 HDESEVHKCL--YCFKVFVHKAHLDKHLILHETSEMHNCDF  509 (693)
Q Consensus       471 H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~~~~~~C~~  509 (693)
                      |++++||+|.  .|++.|...+.|..|+++|++++||.|++
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3344444443  34444444444444444444444444433

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=4.1e-10  Score=88.37  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=45.6

Q ss_pred             hcccccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCC
Q psy2875          13 EQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        13 ~~l~~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      ++|..|++++.+++||.|+.|++.|. .+.|..|+  .|.+++||.|+.|++.|. ...|..|+++|.++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE--DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH--HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH--hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            45667777777777777777777774 77777775  456677777777777665 46677777766654

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=8.4e-10  Score=77.13  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=15.8

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      |++++||+|++|++.|.....|..|+++|++++||.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            3444444444444444444444444444444444444

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.6e-09  Score=76.13  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=19.5

Q ss_pred             hhCCCCcccCCcCcccCCChhHHHHHHhhhcCCCCccccc
Q psy2875         498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEEYHTKHTCD  537 (693)
Q Consensus       498 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~C~  537 (693)
                      +|++++||.|++|++.|.+...|..|+++|+++ +||+|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~-k~~~C~   44 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE-KPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSC-CCSSCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCC-CCCCCC
Confidence            444455555555555555555555555555444 455543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.3e-09  Score=73.09  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=25.0

Q ss_pred             cccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          20 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        20 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      ++|++++||+|++|++.|...+.|..|++ +|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            35566666666666666666666666665 6666666655

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.8e-10  Score=90.47  Aligned_cols=64  Identities=14%  Similarity=0.165  Sum_probs=33.3

Q ss_pred             HHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         436 LKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       436 L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      |..|+++|.+++|+.|+.|++.|. .+.|..|+ .|.+++||.|+.|++.|. ...|..|+++|.++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            334444555555555555555552 55555555 555555555555555544 35555555555443

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2e-09  Score=73.44  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=16.0

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCCCcccC
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      |++++||+|++|++.|...+.|..|+++|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3444444444444444444444444444444444433

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=3.4e-10  Score=91.75  Aligned_cols=58  Identities=17%  Similarity=0.411  Sum_probs=30.0

Q ss_pred             ccccCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccccCChhHHHHHHHhhcC
Q psy2875          19 QGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG   81 (693)
Q Consensus        19 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~   81 (693)
                      .++|++++||+|++|++.|...+.|..|++ +|++++||+|..|.    ....|..|+++|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHH-HHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            344555555555555555555555555554 55555555554432    23344444444443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=1.3e-10  Score=94.16  Aligned_cols=56  Identities=14%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +|++++||+|++|++.|...+.|..|+++|++++||.|..|.    ....|..|.++|.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            355555555555555555555555555555555555554432    33444445555544

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=1.1e-08  Score=75.98  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             ccCCCcccccCC--CCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          21 KSIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        21 ~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      ..+|+|||+|++  |++.|...++|.+|++++|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            356777777754  77777777777777644777777777754

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.61  E-value=2.2e-08  Score=67.25  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=15.6

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCCCccc
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETSEMHN  506 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~  506 (693)
                      ++++||.|++||+.|...+.|..|+++|++++||.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            34444444444444444444444444444444443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.59  E-value=2.4e-08  Score=67.12  Aligned_cols=37  Identities=19%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             cCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccc
Q psy2875          22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKC   59 (693)
Q Consensus        22 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C   59 (693)
                      |++++||+|++||+.|...+.|..|++ +|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHH-HcCCCcccee
Confidence            345556666666666666666666655 5555555543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.57  E-value=4e-08  Score=65.04  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=24.4

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCCC
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDL   53 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   53 (693)
                      |+++|++++||+|++|++.|...+.|.+|++ +|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHG-GGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHH-Hhcc
Confidence            5666777777777777777777777777766 5654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=1.9e-08  Score=66.61  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=12.7

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      |++++||.|++|++.|...+.|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            33333444444444444444444444333333

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.4e-08  Score=66.10  Aligned_cols=34  Identities=26%  Similarity=0.576  Sum_probs=17.3

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCCC
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQK   55 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k   55 (693)
                      +|++++||.|++|++.|...+.|.+|++ +|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIK-TNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHH-HHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHH-HHcCCC
Confidence            4455555555555555555555555544 444443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.54  E-value=4.6e-08  Score=72.67  Aligned_cols=40  Identities=23%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             cCCCCCcccccc--cccccCChhHHHHHH-HhhcCCCceeccc
Q psy2875          50 THDLQKKYKCKL--CARMYRYKWNLKAHL-KMHKGPKIFTCAQ   89 (693)
Q Consensus        50 ~H~~~k~~~C~~--C~~~f~~~~~L~~H~-~~H~~~~~~~C~~   89 (693)
                      ..+++|||+|++  |+++|...+.|..|+ ++|++++||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            467899999975  999999999999997 6899999999864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.54  E-value=2.7e-08  Score=65.86  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=18.3

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      |+++|++++||.|++||+.|.+...|..|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            34445555555555555555555555555555543

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.52  E-value=6e-08  Score=63.21  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=13.1

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      ++++||.|++|++.|...+.|..|+++|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            3444444444444444444444444444443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.49  E-value=7.4e-08  Score=62.78  Aligned_cols=31  Identities=26%  Similarity=0.543  Sum_probs=12.6

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      ++++||.|++|++.|...+.|..|+++|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            3334444444444444444444444444333

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.49  E-value=6.9e-08  Score=62.88  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             hccCCCccccCcCcccccchhHHHHHHHhcCCCCc
Q psy2875         442 AHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEV  476 (693)
Q Consensus       442 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  476 (693)
                      +|++++||.|++|++.|.+.+.|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47889999999999999999999999999998875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.47  E-value=8.4e-08  Score=62.51  Aligned_cols=33  Identities=33%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             cCCCcccccCCCCcccCChhhHHHHhhhcCCCCC
Q psy2875          22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQK   55 (693)
Q Consensus        22 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k   55 (693)
                      |++++||+|++|++.|...+.|.+|++ +|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLK-VHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHG-GGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHH-HcCCCC
Confidence            455566666666666666666666655 555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.42  E-value=1.3e-07  Score=60.74  Aligned_cols=30  Identities=37%  Similarity=0.825  Sum_probs=13.7

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCCCCce
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDESEVH  477 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  477 (693)
                      ||.|++|++.|...+.|..|+++|++++||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            444444444444444444444444444443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=62.76  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             cccCCCcccccCCCCcccCChhhHHHH-hhhcCCC
Q psy2875          20 GKSIQERKFKCEMCPKSFDHKSNIRRH-MAATHDL   53 (693)
Q Consensus        20 ~~~~~~~~~~C~~C~k~f~~~~~L~~H-~~~~H~~   53 (693)
                      ++|++++||+|++||+.|...+.|.+| ++ +|++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQ-KHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHH-HTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHH-HccC
Confidence            466777777777777777777777777 54 6655

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.5e-07  Score=62.36  Aligned_cols=30  Identities=27%  Similarity=0.487  Sum_probs=14.2

Q ss_pred             cCCCccccCc--CcccccchhHHHHHHHhcCC
Q psy2875         444 EKVKVFHCPK--CPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       444 ~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ++++||+|++  |+++|.+++.|..|+++|++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3444444443  44444444444444444444

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.39  E-value=1.1e-07  Score=62.04  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             cCCCcccccCCCCcccCChhhHHHHh
Q psy2875          22 SIQERKFKCEMCPKSFDHKSNIRRHM   47 (693)
Q Consensus        22 ~~~~~~~~C~~C~k~f~~~~~L~~H~   47 (693)
                      ++||+||+|++||++|.+.++|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45677777777777777777777776

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.38  E-value=1.8e-07  Score=60.06  Aligned_cols=30  Identities=37%  Similarity=0.577  Sum_probs=15.3

Q ss_pred             ceeccccCccccchhhHHHHHHhhCCCCcc
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILHETSEMH  505 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~  505 (693)
                      ||.|++||+.|...+.|..|+++|+|++||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            455555555555555555555555555444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=2.1e-07  Score=61.60  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=15.0

Q ss_pred             CCCCceeccc--cCccccchhhHHHHHHhhCC
Q psy2875         472 DESEVHKCLY--CFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       472 ~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~  501 (693)
                      ++++||+|++  |+++|..++.|+.|+++|+|
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            4445555543  55555555555555555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.6e-07  Score=62.10  Aligned_cols=30  Identities=20%  Similarity=0.372  Sum_probs=13.2

Q ss_pred             cCCCCceeccccCccccchhhHHHH-HHhhC
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKH-LILHE  500 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~  500 (693)
                      |++++||+|+.|++.|..++.|..| +++|+
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            4444444444444444444444444 44443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.33  E-value=2.4e-07  Score=61.61  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=9.4

Q ss_pred             cCccccchhhHHHHHHhhCCCCc
Q psy2875         482 CFKVFVHKAHLDKHLILHETSEM  504 (693)
Q Consensus       482 C~k~f~~~~~L~~H~~~H~~~~~  504 (693)
                      |++.|...+.|..|+++|++++|
T Consensus        14 C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A           14 CGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             TCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCcccCCHHHHHHHHHHhCCCCC
Confidence            44444444444444444444333

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=3.4e-07  Score=60.00  Aligned_cols=33  Identities=21%  Similarity=0.529  Sum_probs=20.3

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      .|++++||+|++|++.|...+.|.+|++ +|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHML-VHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHT-TTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHH-HhcCC
Confidence            3556666666666666666666666665 55554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.31  E-value=2.7e-07  Score=61.34  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             CCCCccccc--ccccccCChhHHHHHHHhhcCCCce
Q psy2875          52 DLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIF   85 (693)
Q Consensus        52 ~~~k~~~C~--~C~~~f~~~~~L~~H~~~H~~~~~~   85 (693)
                      ++++||.|+  .|++.|...+.|..|+++|++++||
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            445555555  3555555555555555555555544

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=2.4e-07  Score=61.20  Aligned_cols=13  Identities=38%  Similarity=0.789  Sum_probs=4.6

Q ss_pred             ceeccccCccccc
Q psy2875         476 VHKCLYCFKVFVH  488 (693)
Q Consensus       476 ~~~C~~C~k~f~~  488 (693)
                      ||+|++|++.|..
T Consensus         9 ~~~C~~C~k~f~~   21 (37)
T 2elp_A            9 AMKCPYCDFYFMK   21 (37)
T ss_dssp             CEECSSSSCEECS
T ss_pred             CeECCCCChhhcc
Confidence            3333333333333

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=2.2e-07  Score=61.33  Aligned_cols=35  Identities=26%  Similarity=0.534  Sum_probs=30.9

Q ss_pred             HhccCCCccccCcCcccccch-hHHHHHHHhcCCCC
Q psy2875         441 LAHEKVKVFHCPKCPKLFRHE-SHLQNHVIVHDESE  475 (693)
Q Consensus       441 ~~h~~~~~~~C~~C~k~f~~~-~~L~~H~~~H~~~~  475 (693)
                      ++|++++||.|++|++.|.+. +.|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            468899999999999999998 99999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=2.8e-07  Score=60.39  Aligned_cols=31  Identities=23%  Similarity=0.593  Sum_probs=14.7

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCC
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      |++++||.|++|++.|...+.|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            3444444444444444444444444444444

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=3.3e-07  Score=60.08  Aligned_cols=31  Identities=29%  Similarity=0.468  Sum_probs=14.9

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCC
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      |++++||.|++|++.|.+.+.|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            4444444444444444444444444444444

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=4.1e-07  Score=59.53  Aligned_cols=28  Identities=32%  Similarity=0.394  Sum_probs=10.7

Q ss_pred             CCCceeccccCccccchhhHHHHHHhhC
Q psy2875         473 ESEVHKCLYCFKVFVHKAHLDKHLILHE  500 (693)
Q Consensus       473 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~  500 (693)
                      +++||+|++|++.|...+.|..|+++|+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            3333333333333333333333333333

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=4.1e-07  Score=59.61  Aligned_cols=33  Identities=30%  Similarity=0.637  Sum_probs=18.4

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      .|++++||+|++|++.|...+.|.+|++ +|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHH-HhccC
Confidence            3455555555555555555555555554 55443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=4.2e-07  Score=59.51  Aligned_cols=31  Identities=39%  Similarity=0.625  Sum_probs=14.4

Q ss_pred             CCCCCcccccccccccCChhHHHHHHHhhcC
Q psy2875          51 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKG   81 (693)
Q Consensus        51 H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~   81 (693)
                      |++++||.|++|++.|.....|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            4444444444444444444444444444444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=5.7e-07  Score=58.81  Aligned_cols=32  Identities=25%  Similarity=0.496  Sum_probs=16.1

Q ss_pred             CCCCCcccccccccccCChhHHHHHHHhhcCC
Q psy2875          51 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        51 H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      |+++++|.|++|++.|.....|..|+++|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            44445555555555555555555555555443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=6.3e-07  Score=58.61  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=16.0

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCCC
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      |++++||.|++|++.|.+.+.|..|+++|+++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            34445555555555555555555555555443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.23  E-value=4.4e-07  Score=59.07  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=9.7

Q ss_pred             CCCccccCcCcccccchhHHHHHH
Q psy2875         445 KVKVFHCPKCPKLFRHESHLQNHV  468 (693)
Q Consensus       445 ~~~~~~C~~C~k~f~~~~~L~~H~  468 (693)
                      +++||.|++|+++|.++++|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            334444444444444444444443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=7.7e-07  Score=58.22  Aligned_cols=31  Identities=35%  Similarity=0.708  Sum_probs=14.6

Q ss_pred             CCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      ++++||.|++|++.|...+.|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            3444444444444444444444444444443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.20  E-value=6.4e-07  Score=63.12  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=10.2

Q ss_pred             CCCCceeccccCccccchhhHHHHHH
Q psy2875         472 DESEVHKCLYCFKVFVHKAHLDKHLI  497 (693)
Q Consensus       472 ~~~~~~~C~~C~k~f~~~~~L~~H~~  497 (693)
                      ++++||.|.+||+.|.....|..|++
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhh
Confidence            33333333333333333333333333

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=9.5e-07  Score=57.76  Aligned_cols=32  Identities=31%  Similarity=0.682  Sum_probs=17.5

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCCC
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      |.+++||.|++|++.|...+.|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            44555555555555555555555555555544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.19  E-value=6.6e-07  Score=63.08  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=29.3

Q ss_pred             hccCCCccccCcCcccccchhHHHHHHH-hcCCCCc
Q psy2875         442 AHEKVKVFHCPKCPKLFRHESHLQNHVI-VHDESEV  476 (693)
Q Consensus       442 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~  476 (693)
                      +|++++||.|++|++.|.+.+.|..|++ +|+++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4889999999999999999999999999 9988754

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.18  E-value=3.5e-07  Score=64.18  Aligned_cols=38  Identities=34%  Similarity=0.622  Sum_probs=24.0

Q ss_pred             cccccccCCCcccccC--CCCcccCChhhHHHHhhhcCCCC
Q psy2875          16 IPAQGKSIQERKFKCE--MCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        16 ~~h~~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      ..|..+|++++||+|+  .||+.|...+.|.+|++ +|+++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~-~H~~e   46 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLED   46 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHH-HccCC
Confidence            3444556666777774  57777777677777765 56654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=2.7e-07  Score=64.81  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=14.0

Q ss_pred             hcCCCCceecc--ccCccccchhhHHHHHHhhCC
Q psy2875         470 VHDESEVHKCL--YCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       470 ~H~~~~~~~C~--~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      +|++++||+|+  .||+.|...+.|..|+++|+|
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            34444444442  344444444444444444444

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.11  E-value=1.7e-07  Score=59.65  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=11.7

Q ss_pred             ceeccccCccccchhhHHHHHHhhCCCCc
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILHETSEM  504 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~  504 (693)
                      ||+|++||+.|...+.|..|+++|++++|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            33444444444444444444444444333

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.10  E-value=1.5e-06  Score=57.28  Aligned_cols=32  Identities=31%  Similarity=0.684  Sum_probs=16.9

Q ss_pred             CCCCCcccccc--cccccCChhHHHHHHHhhcCC
Q psy2875          51 HDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        51 H~~~k~~~C~~--C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      |++++||.|++  ||+.|...+.|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            44555555552  555555555555555555544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.09  E-value=1.5e-06  Score=57.25  Aligned_cols=18  Identities=44%  Similarity=0.717  Sum_probs=6.6

Q ss_pred             cCccccchhhHHHHHHhh
Q psy2875         482 CFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       482 C~k~f~~~~~L~~H~~~H  499 (693)
                      ||+.|...+.|..|+++|
T Consensus        16 C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A           16 CGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             CCCEESCHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHhc
Confidence            333333333333333333

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.09  E-value=2.5e-07  Score=58.90  Aligned_cols=31  Identities=26%  Similarity=0.554  Sum_probs=20.4

Q ss_pred             cccccCCCCcccCChhhHHHHhhhcCCCCCcc
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQKKY   57 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~   57 (693)
                      +||+|++||+.|...+.|.+|++ +|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK-TAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT-SSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH-HHccCCCC
Confidence            35666666666666666666665 66666655

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.00  E-value=3.4e-06  Score=52.18  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=11.3

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|+.|++.|...+.|..|+++|++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhcc
Confidence            44444444444444444444444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.98  E-value=3.2e-06  Score=51.91  Aligned_cols=26  Identities=42%  Similarity=1.048  Sum_probs=11.8

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|+.|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=4.1e-06  Score=51.79  Aligned_cols=28  Identities=29%  Similarity=0.519  Sum_probs=15.5

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCC
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      +||.|+.||+.|...+.|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4555555555555555555555555544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.97  E-value=4.5e-06  Score=51.19  Aligned_cols=26  Identities=31%  Similarity=0.712  Sum_probs=12.0

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|++|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            34444444444444444444444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.97  E-value=6.5e-06  Score=61.88  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=16.2

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      +.+++||+|.+|++.|...+.|..|+++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            34445555555555555555555555555443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.95  E-value=4.8e-06  Score=51.06  Aligned_cols=27  Identities=26%  Similarity=0.680  Sum_probs=13.3

Q ss_pred             cccccccccccCChhHHHHHHHhhcCC
Q psy2875          56 KYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      ||.|++||+.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            444555555555555555555554443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.95  E-value=4.1e-06  Score=51.42  Aligned_cols=26  Identities=38%  Similarity=0.715  Sum_probs=12.7

Q ss_pred             ceeccccCccccchhhHHHHHHhhCC
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      ||.|+.||+.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            44455555555444444444444444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.93  E-value=5.4e-06  Score=51.25  Aligned_cols=27  Identities=19%  Similarity=0.444  Sum_probs=12.4

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      ||.|++|++.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            344444444444444444444444443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.93  E-value=6.5e-06  Score=51.94  Aligned_cols=28  Identities=29%  Similarity=0.586  Sum_probs=13.9

Q ss_pred             CccccC--cCcccccchhHHHHHHHhcCCC
Q psy2875         447 KVFHCP--KCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       447 ~~~~C~--~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      +||.|+  .|+++|...+.|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            345554  4555555555555555555443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.92  E-value=4.8e-06  Score=50.67  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=10.5

Q ss_pred             ccccCcCcccccchhHHHHHHHhc
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H  471 (693)
                      ||.|+.|++.|.+.+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CccCCCCCcccCCHHHHHHHHHhc
Confidence            444444444444444444444443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.91  E-value=6.1e-06  Score=51.66  Aligned_cols=27  Identities=33%  Similarity=0.582  Sum_probs=12.7

Q ss_pred             ccccC--cCcccccchhHHHHHHHhcCCC
Q psy2875         448 VFHCP--KCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       448 ~~~C~--~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      ||.|+  .||++|...+.|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            44444  4444444444444444444443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.90  E-value=5.9e-06  Score=49.81  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=10.7

Q ss_pred             ccccCcCcccccchhHHHHHHHhc
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H  471 (693)
                      ||.|+.||+.|.+.+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHc
Confidence            444444444444444444444443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.90  E-value=5.5e-06  Score=50.39  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=13.5

Q ss_pred             CceeccccCccccchhhHHHHHHhhC
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHE  500 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~  500 (693)
                      +||.|++|++.|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            44555555555555555555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.90  E-value=6e-06  Score=51.00  Aligned_cols=27  Identities=15%  Similarity=0.544  Sum_probs=15.3

Q ss_pred             cccCCcCcccCCChhHHHHHHhhhcCC
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMRSHEEY  530 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~~H~~~  530 (693)
                      ||.|++||+.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            455555555555555555555555544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.90  E-value=5.8e-06  Score=50.63  Aligned_cols=27  Identities=41%  Similarity=0.673  Sum_probs=15.1

Q ss_pred             cccccccccccCChhHHHHHHHhhcCC
Q psy2875          56 KYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      ||.|++||+.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            455555555555555555555555544

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.89  E-value=4.6e-06  Score=50.37  Aligned_cols=26  Identities=19%  Similarity=0.606  Sum_probs=16.3

Q ss_pred             CcccccCCCCcccCChhhHHHHhhhcC
Q psy2875          25 ERKFKCEMCPKSFDHKSNIRRHMAATH   51 (693)
Q Consensus        25 ~~~~~C~~C~k~f~~~~~L~~H~~~~H   51 (693)
                      ++||+|++||+.|...+.|.+|++ +|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMR-GH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHT-TC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-hc
Confidence            356666666666666666666665 44

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.89  E-value=5.2e-06  Score=50.88  Aligned_cols=27  Identities=37%  Similarity=0.797  Sum_probs=14.9

Q ss_pred             cccccccccccCChhHHHHHHHhhcCC
Q psy2875          56 KYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      ||.|++||+.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            455555555555555555555555544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.89  E-value=7.4e-06  Score=51.68  Aligned_cols=27  Identities=30%  Similarity=0.710  Sum_probs=12.5

Q ss_pred             cccccC--CCCcccCChhhHHHHhhhcCCC
Q psy2875          26 RKFKCE--MCPKSFDHKSNIRRHMAATHDL   53 (693)
Q Consensus        26 ~~~~C~--~C~k~f~~~~~L~~H~~~~H~~   53 (693)
                      +||.|+  .||+.|...+.|..|++ +|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK-SHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG-GGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH-HccC
Confidence            344444  44444444444444444 4443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.89  E-value=4.6e-06  Score=50.38  Aligned_cols=24  Identities=21%  Similarity=0.294  Sum_probs=10.6

Q ss_pred             ceeccccCccccchhhHHHHHHhh
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      ||+|++||+.|...+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            444444444444444444444433

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=5.6e-06  Score=50.70  Aligned_cols=26  Identities=31%  Similarity=0.700  Sum_probs=12.2

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|+.|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            44444444444444444444444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.87  E-value=6.2e-06  Score=61.97  Aligned_cols=41  Identities=17%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             cCCCCCcccccccccccCChhHHHHHHHhhcCCCceeccccc
Q psy2875          50 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCD   91 (693)
Q Consensus        50 ~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~   91 (693)
                      .+.+++||.|++|++.|...+.|..|+++|+++. ..+.+++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            4567778888888888888888888888887754 3344443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.87  E-value=6.2e-06  Score=50.51  Aligned_cols=20  Identities=40%  Similarity=0.685  Sum_probs=7.1

Q ss_pred             eccccCccccchhhHHHHHH
Q psy2875         478 KCLYCFKVFVHKAHLDKHLI  497 (693)
Q Consensus       478 ~C~~C~k~f~~~~~L~~H~~  497 (693)
                      .|++|++.|.....|..|++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            4 KCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             ECTTTSCEESCHHHHHHHHH
T ss_pred             cCCCCCCccCChhHHHHHHH
Confidence            33333333333333333333

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.86  E-value=7.8e-06  Score=49.25  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=13.1

Q ss_pred             CceeccccCccccchhhHHHHHHhh
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      +||.|+.||+.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4455555555555555555555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.86  E-value=6e-06  Score=49.69  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=17.5

Q ss_pred             CcccccchhhcCChHHHHHHhhhhcCC
Q psy2875         559 LFTCIHCGDTLNNAKDYASHLLIIHNI  585 (693)
Q Consensus       559 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  585 (693)
                      ||.|++||++|.+.+.|.+|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            466777777777777777777766653

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.07  E-value=2e-06  Score=52.92  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=11.5

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|++|+++|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            34444444444444444444444443

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.85  E-value=9.4e-06  Score=50.76  Aligned_cols=27  Identities=33%  Similarity=0.704  Sum_probs=15.1

Q ss_pred             ccccC--CCCcccCChhhHHHHhhhcCCCC
Q psy2875          27 KFKCE--MCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        27 ~~~C~--~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      ||.|+  +||+.|...+.|..|++ +|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            55555  55555555555555555 55544

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.05  E-value=2.3e-06  Score=53.10  Aligned_cols=26  Identities=31%  Similarity=0.659  Sum_probs=12.0

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|+.|++.|.+.+.|..|+++|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            44444444444444444444444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.05  E-value=2.3e-06  Score=52.68  Aligned_cols=22  Identities=32%  Similarity=0.695  Sum_probs=10.0

Q ss_pred             ccccCCCCcccCChhhHHHHhh
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      ||.|++||+.|...++|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            3444444444444444444443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.02  E-value=2.7e-06  Score=52.77  Aligned_cols=23  Identities=22%  Similarity=0.722  Sum_probs=10.6

Q ss_pred             cccccCCCCcccCChhhHHHHhh
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      +||.|++||+.|...+.|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            34444444444444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.78  E-value=1.5e-05  Score=47.89  Aligned_cols=26  Identities=38%  Similarity=0.792  Sum_probs=14.5

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCCC
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHDL   53 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~   53 (693)
                      ||+|++||+.|.+.+.|.+|++ +|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~-~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR-VHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG-GTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHH-HcCC
Confidence            4556666666666666666655 5543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.77  E-value=1.4e-05  Score=49.39  Aligned_cols=29  Identities=21%  Similarity=0.629  Sum_probs=17.8

Q ss_pred             cccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      +||.|++||+.|.+.+.|..|+..+|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            35666666666666666666632266654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.75  E-value=1.3e-05  Score=49.57  Aligned_cols=26  Identities=23%  Similarity=0.568  Sum_probs=12.1

Q ss_pred             ccccCcCcccccchhHHHHH-HHhcCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNH-VIVHDE  473 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H-~~~H~~  473 (693)
                      ||.|+.|++.|.+.+.|..| +++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            44444444444444444444 344444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.87  E-value=5.4e-06  Score=49.45  Aligned_cols=21  Identities=29%  Similarity=0.641  Sum_probs=7.7

Q ss_pred             ccCCcCcccCCChhHHHHHHh
Q psy2875         505 HNCDFCHLTFTTDNDLIRHMR  525 (693)
Q Consensus       505 ~~C~~C~~~f~~~~~L~~H~~  525 (693)
                      |.|++||+.|.+...|..|++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            333333333333333333333

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.83  E-value=6.4e-06  Score=49.15  Aligned_cols=24  Identities=38%  Similarity=0.750  Sum_probs=10.7

Q ss_pred             ccccCcCcccccchhHHHHHHHhc
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H  471 (693)
                      ||.|++||+.|.+.+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            344444444444444444444443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.47  E-value=5.4e-05  Score=46.12  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=10.7

Q ss_pred             ceecc--ccCccccchhhHHHHHHhh
Q psy2875         476 VHKCL--YCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       476 ~~~C~--~C~k~f~~~~~L~~H~~~H  499 (693)
                      ||.|+  .||+.|...+.|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            34444  4444444444444444444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.46  E-value=6.3e-05  Score=45.79  Aligned_cols=25  Identities=28%  Similarity=0.707  Sum_probs=14.0

Q ss_pred             ccccC--cCcccccchhHHHHHHHhcC
Q psy2875         448 VFHCP--KCPKLFRHESHLQNHVIVHD  472 (693)
Q Consensus       448 ~~~C~--~C~k~f~~~~~L~~H~~~H~  472 (693)
                      ||.|+  .|++.|...+.|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45555  55555555555555555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.00052  Score=51.12  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=26.0

Q ss_pred             CcccCCChhHHHHHH-hhhcCCC-----Cccccc--ccccccCChHhHHHHHhcc
Q psy2875         510 CHLTFTTDNDLIRHM-RSHEEYH-----TKHTCD--ICGEKFINDLKLKAHIKII  556 (693)
Q Consensus       510 C~~~f~~~~~L~~H~-~~H~~~~-----~~~~C~--~C~~~f~~~~~L~~H~~~~  556 (693)
                      |++.|.+...|..|+ +.|.+..     .+|.|.  .|+..+.....|..|++..
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            555555555555555 3454431     256665  5666666666666666543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00067  Score=50.51  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             CCCcccCChhhHHHHhhhcCCCCC------ccccc--ccccccCChhHHHHHHHh
Q psy2875          32 MCPKSFDHKSNIRRHMAATHDLQK------KYKCK--LCARMYRYKWNLKAHLKM   78 (693)
Q Consensus        32 ~C~k~f~~~~~L~~H~~~~H~~~k------~~~C~--~C~~~f~~~~~L~~H~~~   78 (693)
                      .|++.|.+...|..|+...|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            367777777777777654665544      45554  455555555555555554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.75  E-value=0.0011  Score=60.69  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=44.7

Q ss_pred             Ccccc--cccccccCChHhHHHHHhc-cCCCcccccchhhcCChHHHHHHhhhhcCCCC--hhhhhhhhhcCchHHHHHh
Q psy2875         532 TKHTC--DICGEKFINDLKLKAHIKI-IHNLFTCIHCGDTLNNAKDYASHLLIIHNIES--SQQVEKNLNNMYNLLTTHI  606 (693)
Q Consensus       532 ~~~~C--~~C~~~f~~~~~L~~H~~~-~H~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~--c~~c~~~f~~~~~~l~~h~  606 (693)
                      ....|  .-|+..+. ...|..|+.. .+.+..|+.|+..+ .+..|..|+...=+.++  |..|+..|..  ..|..|.
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~--~~l~~H~  156 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF--EDKEIHD  156 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG--GGHHHHH
T ss_pred             cccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH--HHHHhHH
Confidence            33445  34555433 4456666542 12355666666666 45566666655444444  7777776653  4677888


Q ss_pred             hhhcCCCCC
Q psy2875         607 EYHHSQNNI  615 (693)
Q Consensus       607 ~~h~~~~~~  615 (693)
                      .+++|+.++
T Consensus       157 ~~~~~~~~~  165 (170)
T 3hcs_A          157 QNCPLALEH  165 (170)
T ss_dssp             TTCCC----
T ss_pred             HhCcChhhh
Confidence            888887665

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.35  E-value=0.0075  Score=55.01  Aligned_cols=75  Identities=19%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             CCccccCChHHHHHHHHhccCCCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhhCCCC
Q psy2875         425 QCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILHETSE  503 (693)
Q Consensus       425 ~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~  503 (693)
                      -|+.... ...|..|.. .=..++..|+.|+..+ ....|..|+...-..++-.|+.|+..+. ...|..|..++.|+.
T Consensus        89 GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             TCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC--
T ss_pred             CCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChh
Confidence            3444432 334445542 2223445555555554 3445555555444455555555555442 344555555555543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.02  E-value=0.0012  Score=56.89  Aligned_cols=23  Identities=17%  Similarity=0.489  Sum_probs=17.4

Q ss_pred             CcccccccccccCChHhHHHHHh
Q psy2875         532 TKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       532 ~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      ..|.|.+|++.|.+...|..|+.
T Consensus        92 ~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           92 RSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCeEcCCCCCEeCCHHHHHHHHC
Confidence            66777777777777777777765

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.57  E-value=0.0023  Score=55.02  Aligned_cols=27  Identities=19%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             hCCCCcccCCcCcccCCChhHHHHHHh
Q psy2875         499 HETSEMHNCDFCHLTFTTDNDLIRHMR  525 (693)
Q Consensus       499 H~~~~~~~C~~C~~~f~~~~~L~~H~~  525 (693)
                      +.+.+.|.|.+|+..|.+...|..|..
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            455666778888888887777777764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.53  E-value=0.0049  Score=51.86  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhh
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      ....++|++||.|..|++.|.+.+.|..|++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            3445667777777777777777777777764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.88  E-value=0.0072  Score=50.84  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             HhhcCCCceeccccccccCCchhHHhhhhc
Q psy2875          77 KMHKGPKIFTCAQCDKAFSLKSNLSKHVRH  106 (693)
Q Consensus        77 ~~H~~~~~~~C~~C~~~F~~~~~L~~H~~~  106 (693)
                      ..|+|++||.|..|++.|.+.+.|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            346667777777777777777777777664

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.57  E-value=0.017  Score=38.48  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=15.7

Q ss_pred             CcccccccccccCChHhHHHHHh
Q psy2875         532 TKHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       532 ~~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      .+|.|+.|+..|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45667777777777777777766

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.41  E-value=0.02  Score=38.15  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=17.4

Q ss_pred             cccccCCCCcccCChhhHHHHhh
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      .+|.|+.|+..|+....|++||.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            46777777777777777777775

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.77  E-value=0.39  Score=30.00  Aligned_cols=28  Identities=32%  Similarity=0.598  Sum_probs=24.4

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      .|.|++|-+.|.+...|..|....|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            4999999999999999999998788643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.84  E-value=0.35  Score=30.19  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=16.8

Q ss_pred             cccccccccccCChHhHHHHHhccCC
Q psy2875         533 KHTCDICGEKFINDLKLKAHIKIIHN  558 (693)
Q Consensus       533 ~~~C~~C~~~f~~~~~L~~H~~~~H~  558 (693)
                      .|.|++|.+.|.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            36677777777777777766665553

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=80.69  E-value=2.4  Score=32.10  Aligned_cols=39  Identities=26%  Similarity=0.660  Sum_probs=17.1

Q ss_pred             cccc-CCCCccCCCchhhhhhhhhccCCcccccCccccccC
Q psy2875         365 LHKC-HLCTKAYPSEKNLDRHLLTHNVRRSFRCKSCGRRFE  404 (693)
Q Consensus       365 ~~~C-~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~  404 (693)
                      +-.| ..|+..+. +..|..|+...=..++..|..|+..+.
T Consensus        16 ~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~   55 (76)
T 2yuc_A           16 VIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFS   55 (76)
T ss_dssp             CCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCC
T ss_pred             ccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccC
Confidence            3445 34554443 334555544333334444555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	693
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	8e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	3e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	7e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.001

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL 61
           + + C+ C K F    ++  H+   H  ++ +KC++
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 55  KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           K Y C+ C + + +K     H+ MH G + + C  C K F +K +L  H++ H
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 419 KFHKCTQCEESFKNKKHLKQHLLAHEKVKVFHCPKCPKLFRHESHLQNHVIVH 471
           K + C QC +SF +K    +H+  H  ++ + C  C K F+ + HL  H+ +H
Sbjct: 2   KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 25 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 79
          ++ + C+ C KSF HKS   RHM+      + Y C +C + ++ K +L  H+K+H
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 482 CFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRSH 527
           C K F HK+  D+H+ +H     + C  C   F   + L+ HM+ H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 447 KVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH 499
           K++ C +C K F H+S    H+ +H     + C  C K F  K HL  H+ +H
Sbjct: 2   KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 77  KMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHHMENV 111
           + H G K + C  C   F+    +  H+ + H ENV
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 78  MHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 107
           +H G K + C +C KAFS  S L +H R H
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 75  HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 108
             +   G K F C  CD++FS   +L+ H + HM
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 77  KMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 110
           + H G K + C+ CDK F  K  L  H + +H  N
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	693
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.58
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.58
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.21
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.15
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.12
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.12
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.05
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.04
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.01
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.94
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.9
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.88
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.85
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.84
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.83
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.81
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.76
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.74
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.66
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.64
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.58
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.56
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.53
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.52
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.47
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.4
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.28
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.27
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.27
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.26
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.19
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.18
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.14
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.05
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.93
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.78
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.74
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.68
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.6
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.43
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.37
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.35
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.33
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.22
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.21
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.17
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.14
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.04
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.78
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.74
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.73
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.73
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.72
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.71
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.65
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.6
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.59
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.55
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.51
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.45
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.45
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.38
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.34
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.31
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.3
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.22
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.11
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.04
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.01
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.58
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.45
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.39
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.7
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.54
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.42
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.26
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.86
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.82
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.39
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.87
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.64
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.28
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	91.32
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.98
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.85
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.17
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	89.13
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.0
d1y0jb1	36	U-shaped transcription factor, different fingers {	88.72
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.21
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	86.84
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	83.41
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	83.37
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.32
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	81.15
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	80.3
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	80.17

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.3e-16  Score=111.33  Aligned_cols=51  Identities=29%  Similarity=0.615  Sum_probs=22.0

Q ss_pred             CceeccccCccccchhhHHHHHHhhCCCCcccCCcCcccCCChhHHHHHHhh
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHETSEMHNCDFCHLTFTTDNDLIRHMRS  526 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~  526 (693)
                      +||+|. ||++|..++.|..|+++|+|++||.|++||++|.+.+.|..||++
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            344442 444444444444444444444444444444444444444444443

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.3e-16  Score=110.86  Aligned_cols=53  Identities=34%  Similarity=0.556  Sum_probs=41.0

Q ss_pred             CCccccCcCcccccchhHHHHHHHhcCCCCceeccccCccccchhhHHHHHHhh
Q psy2875         446 VKVFHCPKCPKLFRHESHLQNHVIVHDESEVHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       446 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      ||||.|+ ||++|...+.|..|+++|+|++||.|++||++|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5677774 7777777777777777777777777777777777777777777765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.6e-13  Score=84.73  Aligned_cols=38  Identities=21%  Similarity=0.621  Sum_probs=27.7

Q ss_pred             CCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccc
Q psy2875          24 QERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL   61 (693)
Q Consensus        24 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   61 (693)
                      -+|||+|++||++|...++|.+||+.+|++++||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            36777777777777777777777765777777777764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.4e-12  Score=82.49  Aligned_cols=37  Identities=32%  Similarity=0.679  Sum_probs=29.6

Q ss_pred             ccccccCCCcccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          17 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        17 ~h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      +|+++|+++|||+|++|||+|...++|.+|++ +|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCc-cCCCC
Confidence            57788888888888888888888888888877 78775

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.7e-12  Score=80.44  Aligned_cols=34  Identities=29%  Similarity=0.583  Sum_probs=14.7

Q ss_pred             CceeccccCccccchhhHHHHHH-hhCCCCcccCC
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLI-LHETSEMHNCD  508 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~  508 (693)
                      +||+|.+||++|...++|+.|++ +|+|++||.|+
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            44444444444444444444432 34444444443

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.6e-12  Score=77.38  Aligned_cols=33  Identities=24%  Similarity=0.445  Sum_probs=18.1

Q ss_pred             ccCCCcccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          21 KSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        21 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      ||||||||+|.+||++|...++|.+|++ +|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r-~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHH-GGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcc-ccCCC
Confidence            4555555555555555555555555554 55543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.6e-12  Score=80.79  Aligned_cols=37  Identities=24%  Similarity=0.549  Sum_probs=32.1

Q ss_pred             HHhhhcCCCCCcccccccccccCChhHHHHHHHhhcCC
Q psy2875          45 RHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        45 ~H~~~~H~~~k~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      +|++ +|++++||+|++||++|...++|..|+++|+||
T Consensus         2 rH~~-~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCS-CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCc-ccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4776 889999999999999999999999999999886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.4e-11  Score=75.84  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=12.4

Q ss_pred             cCCCCceeccccCccccchhhHHHHHHhhCC
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      |+|++||+|.+||++|..+++|..|+++|+|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            3334444444444444444444444444333

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=4.5e-11  Score=76.50  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=26.1

Q ss_pred             cccccCCCcccccCCCCcccCChhhHHHHhhhcCC
Q psy2875          18 AQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHD   52 (693)
Q Consensus        18 h~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   52 (693)
                      |.++|||||||+|++||++|..+++|.+|++ +|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r-~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHG-GGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHh-cCc
Confidence            5677788888888888888888888888876 664

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.4e-11  Score=75.76  Aligned_cols=34  Identities=18%  Similarity=0.514  Sum_probs=25.9

Q ss_pred             cccCCCcccccCCCCcccCChhhHHHHhhhcCCC
Q psy2875          20 GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDL   53 (693)
Q Consensus        20 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   53 (693)
                      ++|||||||+|++||+.|..+++|++|++..|+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4678888888888888888888888887656654

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.9e-11  Score=75.33  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=17.1

Q ss_pred             hcCCCCceeccccCccccchhhHHHHHHhhCCC
Q psy2875         470 VHDESEVHKCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       470 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      +|+|++||+|++||++|..++.|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            455555555555555555555555555555443

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.7e-11  Score=75.07  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=16.0

Q ss_pred             hhCCCCcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         498 LHETSEMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       498 ~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +|+|++||+|++||++|.+++.|..|+++|++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            44555555555555555555555555555443

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=4.4e-11  Score=76.54  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=18.7

Q ss_pred             HHHhhCCCCcccCCcCcccCCChhHHHHHHhhhc
Q psy2875         495 HLILHETSEMHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       495 H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      |.|+|+|++||+|++||++|.+++.|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            3455555555555555555555555555555553

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.4e-10  Score=72.37  Aligned_cols=32  Identities=34%  Similarity=0.657  Sum_probs=21.5

Q ss_pred             cCCCcccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        22 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      |||||||+|++|++.|..+++|.+|++ +|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            566777777777777777777777766 66543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.3e-10  Score=71.42  Aligned_cols=31  Identities=23%  Similarity=0.496  Sum_probs=15.4

Q ss_pred             ccCCCccccCcCcccccchhHHHHHHHhcCC
Q psy2875         443 HEKVKVFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       443 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      |+|++||+|++|++.|.++++|+.|+++|++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            3445555555555555555555555555443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.90  E-value=3.7e-10  Score=67.40  Aligned_cols=27  Identities=30%  Similarity=0.688  Sum_probs=13.6

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      ||.|++|+++|.+.+.|..|+++|+||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            455555555555555555555555544

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4e-10  Score=71.25  Aligned_cols=25  Identities=20%  Similarity=0.541  Sum_probs=9.5

Q ss_pred             cCCCCceeccccCccccchhhHHHH
Q psy2875         471 HDESEVHKCLYCFKVFVHKAHLDKH  495 (693)
Q Consensus       471 H~~~~~~~C~~C~k~f~~~~~L~~H  495 (693)
                      |+|++||+|++|++.|..+++|+.|
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H   27 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMH   27 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHH
T ss_pred             cCCCCCEeCCCCcccccchHHHHHH
Confidence            3333333333333333333333333

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=4.4e-10  Score=66.08  Aligned_cols=26  Identities=27%  Similarity=0.709  Sum_probs=12.0

Q ss_pred             CcccCCcCcccCCChhHHHHHHhhhc
Q psy2875         503 EMHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       503 ~~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      |||+|++||++|.+++.|.+|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            44444444444444444444444444

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.85  E-value=6.8e-10  Score=66.20  Aligned_cols=29  Identities=34%  Similarity=0.887  Sum_probs=15.7

Q ss_pred             cccccCCCCcccCChhhHHHHhhhcCCCCC
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQK   55 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k   55 (693)
                      |||+|++||++|...+.|.+|++ +|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccC-cccCCC
Confidence            35555555555555555555555 555543

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.4e-10  Score=65.87  Aligned_cols=27  Identities=41%  Similarity=0.955  Sum_probs=14.0

Q ss_pred             ccccCcCcccccchhHHHHHHHhcCCC
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      ||.|++||++|.++++|..|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            455555555555555555555555544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=5.3e-10  Score=65.73  Aligned_cols=28  Identities=25%  Similarity=0.591  Sum_probs=14.3

Q ss_pred             CCceeccccCccccchhhHHHHHHhhCC
Q psy2875         474 SEVHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       474 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      |+||+|++|+++|..++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3455555555555555555555555543

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8.8e-10  Score=65.53  Aligned_cols=28  Identities=29%  Similarity=0.621  Sum_probs=15.0

Q ss_pred             CcccccccccccCChhHHHHHHHhhcCC
Q psy2875          55 KKYKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        55 k~~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      |||.|++||++|..++.|..|+++|+||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            3455555555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.1e-10  Score=77.35  Aligned_cols=32  Identities=22%  Similarity=0.544  Sum_probs=15.0

Q ss_pred             cCCCCceeccc--cCccccchhhHHHHHHhhCCC
Q psy2875         471 HDESEVHKCLY--CFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       471 H~~~~~~~C~~--C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      |+|++||+|++  |+++|..+++|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            44444444443  444444444444444444444

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=6.1e-10  Score=75.09  Aligned_cols=40  Identities=30%  Similarity=0.592  Sum_probs=23.9

Q ss_pred             cccccccccCCCcccccCC--CCcccCChhhHHHHhhhcCCCCC
Q psy2875          14 QQIPAQGKSIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQK   55 (693)
Q Consensus        14 ~l~~h~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~~k   55 (693)
                      .|..|+ .|+||+||+|++  |+++|...++|.+|++ +|+|+|
T Consensus         6 ~l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_           6 SIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             SGGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             hhcchh-hccCCCCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            344444 366666666655  6666666666666665 666653

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.3e-09  Score=68.61  Aligned_cols=26  Identities=38%  Similarity=0.641  Sum_probs=10.9

Q ss_pred             cCccccchhhHHHHHHhhCCCCcccC
Q psy2875         482 CFKVFVHKAHLDKHLILHETSEMHNC  507 (693)
Q Consensus       482 C~k~f~~~~~L~~H~~~H~~~~~~~C  507 (693)
                      ||++|.+++.|++|+++|+|++||.|
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeC
Confidence            44444444444444444444444444

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.9e-09  Score=67.83  Aligned_cols=32  Identities=34%  Similarity=0.821  Sum_probs=17.9

Q ss_pred             cccCc--CcccccchhHHHHHHHhcCCCCceecc
Q psy2875         449 FHCPK--CPKLFRHESHLQNHVIVHDESEVHKCL  480 (693)
Q Consensus       449 ~~C~~--C~k~f~~~~~L~~H~~~H~~~~~~~C~  480 (693)
                      |.|+.  |+++|.+++.|+.|+++|+|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            44543  555555555555555555555555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.7e-09  Score=60.28  Aligned_cols=24  Identities=29%  Similarity=0.685  Sum_probs=10.8

Q ss_pred             cccccccccccCChhHHHHHHHhh
Q psy2875          56 KYKCKLCARMYRYKWNLKAHLKMH   79 (693)
Q Consensus        56 ~~~C~~C~~~f~~~~~L~~H~~~H   79 (693)
                      ||+|++||++|...+.|..|+++|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            444444444444444444444444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.8e-09  Score=59.83  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=7.7

Q ss_pred             eeccccCccccchhhHHHHHH
Q psy2875         477 HKCLYCFKVFVHKAHLDKHLI  497 (693)
Q Consensus       477 ~~C~~C~k~f~~~~~L~~H~~  497 (693)
                      |+|++|||+|..++.|..|++
T Consensus         3 y~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           3 YKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             ccCCCCcCeeccCcccccCcc
Confidence            333333333333333333333

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.4e-08  Score=60.64  Aligned_cols=26  Identities=23%  Similarity=0.493  Sum_probs=12.8

Q ss_pred             ccccCc--CcccccchhHHHHHHHhcCC
Q psy2875         448 VFHCPK--CPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       448 ~~~C~~--C~k~f~~~~~L~~H~~~H~~  473 (693)
                      ||.|++  |+++|.+.++|+.|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            444544  55555555555555555444

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.6e-08  Score=60.36  Aligned_cols=27  Identities=33%  Similarity=0.785  Sum_probs=14.3

Q ss_pred             CcccCCc--CcccCCChhHHHHHHhhhcC
Q psy2875         503 EMHNCDF--CHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       503 ~~~~C~~--C~~~f~~~~~L~~H~~~H~~  529 (693)
                      |||.|++  ||++|.+++.|++|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            3455555  55555555555555555554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.4e-08  Score=60.73  Aligned_cols=26  Identities=27%  Similarity=0.548  Sum_probs=11.4

Q ss_pred             ceeccc--cCccccchhhHHHHHHhhCC
Q psy2875         476 VHKCLY--CFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       476 ~~~C~~--C~k~f~~~~~L~~H~~~H~~  501 (693)
                      ||.|++  ||++|++++.|+.|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            444433  44444444444444444444

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.7e-08  Score=60.35  Aligned_cols=26  Identities=35%  Similarity=0.673  Sum_probs=13.1

Q ss_pred             cccCCc--CcccCCChhHHHHHHhhhcC
Q psy2875         504 MHNCDF--CHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       504 ~~~C~~--C~~~f~~~~~L~~H~~~H~~  529 (693)
                      ||.|++  ||++|++++.|.+|+|+|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            455544  55555555555555555544

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.1e-08  Score=59.27  Aligned_cols=28  Identities=32%  Similarity=0.593  Sum_probs=14.3

Q ss_pred             CccccC--cCcccccchhHHHHHHHhcCCC
Q psy2875         447 KVFHCP--KCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       447 ~~~~C~--~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      +||.|+  .|+++|.+.++|..|+++|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            345553  3555555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7.7e-08  Score=58.03  Aligned_cols=29  Identities=38%  Similarity=0.746  Sum_probs=16.5

Q ss_pred             cccccC--CCCcccCChhhHHHHhhhcCCCCC
Q psy2875          26 RKFKCE--MCPKSFDHKSNIRRHMAATHDLQK   55 (693)
Q Consensus        26 ~~~~C~--~C~k~f~~~~~L~~H~~~~H~~~k   55 (693)
                      |||+|+  .||++|...++|.+|++ +|+|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            456663  36666666666666655 555553

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=1.1e-07  Score=56.03  Aligned_cols=25  Identities=36%  Similarity=0.721  Sum_probs=11.8

Q ss_pred             cccCCc--CcccCCChhHHHHHHhhhc
Q psy2875         504 MHNCDF--CHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       504 ~~~C~~--C~~~f~~~~~L~~H~~~H~  528 (693)
                      ||.|++  ||++|.+.+.|.+|+++|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            444444  4444444444444444444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=1.3e-07  Score=55.84  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=13.9

Q ss_pred             Cceeccc--cCccccchhhHHHHHHhhCC
Q psy2875         475 EVHKCLY--CFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       475 ~~~~C~~--C~k~f~~~~~L~~H~~~H~~  501 (693)
                      +||+|++  |+++|.+.+.|+.|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3455544  55555555555555555543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=2.7e-07  Score=55.84  Aligned_cols=28  Identities=29%  Similarity=0.571  Sum_probs=15.7

Q ss_pred             CCccccCc--CcccccchhHHHHHHHhcCC
Q psy2875         446 VKVFHCPK--CPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       446 ~~~~~C~~--C~k~f~~~~~L~~H~~~H~~  473 (693)
                      |+||.|++  |+++|...++|+.|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            35555554  55555555555555555553

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=2.4e-07  Score=56.04  Aligned_cols=28  Identities=29%  Similarity=0.743  Sum_probs=17.1

Q ss_pred             CcccccCC--CCcccCChhhHHHHhhhcCCC
Q psy2875          25 ERKFKCEM--CPKSFDHKSNIRRHMAATHDL   53 (693)
Q Consensus        25 ~~~~~C~~--C~k~f~~~~~L~~H~~~~H~~   53 (693)
                      ||||.|++  ||++|+..++|.+|++ +|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r-~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhh-hccC
Confidence            45666655  6666666666666665 5553

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=4.3e-07  Score=48.60  Aligned_cols=25  Identities=36%  Similarity=0.805  Sum_probs=12.8

Q ss_pred             cccCCcCcccCCChhHHHHHHhhhc
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      |++|++||+.|+.+..|..|||.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3445555555555555555555554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.8e-07  Score=53.64  Aligned_cols=25  Identities=28%  Similarity=0.645  Sum_probs=13.0

Q ss_pred             CcccCCc--CcccCCChhHHHHHHhhh
Q psy2875         503 EMHNCDF--CHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       503 ~~~~C~~--C~~~f~~~~~L~~H~~~H  527 (693)
                      +||.|++  ||++|++.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3455544  555555555555555554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.5e-07  Score=53.19  Aligned_cols=25  Identities=32%  Similarity=0.883  Sum_probs=12.7

Q ss_pred             CccccCc--CcccccchhHHHHHHHhc
Q psy2875         447 KVFHCPK--CPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       447 ~~~~C~~--C~k~f~~~~~L~~H~~~H  471 (693)
                      |||.|++  |||+|...++|+.|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3455544  555555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=9.7e-07  Score=47.22  Aligned_cols=26  Identities=38%  Similarity=0.627  Sum_probs=13.7

Q ss_pred             ceeccccCccccchhhHHHHHHhhCC
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      |.+|++|++.|+.+..|+.|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            34555555555555555555555543

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.3e-06  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.632  Sum_probs=15.4

Q ss_pred             CCcccCCcCcccCCChhHHHHHHhhh
Q psy2875         502 SEMHNCDFCHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       502 ~~~~~C~~C~~~f~~~~~L~~H~~~H  527 (693)
                      ++||.|++||+.|..+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35566666666666666666665555

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2e-06  Score=47.77  Aligned_cols=26  Identities=27%  Similarity=0.659  Sum_probs=16.6

Q ss_pred             CCceeccccccccCCchhHHhhhhcc
Q psy2875          82 PKIFTCAQCDKAFSLKSNLSKHVRHH  107 (693)
Q Consensus        82 ~~~~~C~~C~~~F~~~~~L~~H~~~h  107 (693)
                      |+||.|++||+.|......++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            45666666666666666666666665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.9e-06  Score=48.94  Aligned_cols=28  Identities=32%  Similarity=0.625  Sum_probs=12.3

Q ss_pred             ccCcCcccccchhHHHHHHHhcCCCCce
Q psy2875         450 HCPKCPKLFRHESHLQNHVIVHDESEVH  477 (693)
Q Consensus       450 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~  477 (693)
                      .|..|||.|.....|.+|...|++++||
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3444444444444444444444444443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.2e-06  Score=47.85  Aligned_cols=29  Identities=34%  Similarity=0.692  Sum_probs=15.3

Q ss_pred             cccCCCCcccCChhhHHHHhhhcCCCCCcc
Q psy2875          28 FKCEMCPKSFDHKSNIRRHMAATHDLQKKY   57 (693)
Q Consensus        28 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~   57 (693)
                      ..|++|||.|.....|.+|.. .|+++|||
T Consensus         6 ~~ce~cgk~frdvyhlnrhkl-shs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKL-SHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGG-GSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhc-ccCCCCCC
Confidence            345555555555555555544 55555554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6.9e-06  Score=45.07  Aligned_cols=27  Identities=33%  Similarity=0.637  Sum_probs=12.0

Q ss_pred             CccccCcCcccccchhHHHHHHHhcCC
Q psy2875         447 KVFHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       447 ~~~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      +||+|..|.+.-.+.+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            344444444444444444444444443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=7.7e-06  Score=45.98  Aligned_cols=27  Identities=30%  Similarity=0.657  Sum_probs=12.7

Q ss_pred             CcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         503 EMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       503 ~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +||.|++|+.+|..+..+..|+|+|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            444444444444444444444444443

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=9.1e-06  Score=44.61  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=13.9

Q ss_pred             CceeccccCccccchhhHHHHHHhhCC
Q psy2875         475 EVHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       475 ~~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      +||+|..|...-.+.+.|..|+|.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555544

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=9.1e-06  Score=45.67  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=17.2

Q ss_pred             CCceeccccCccccchhhHHHHHHhhCC
Q psy2875         474 SEVHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       474 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      ++||.|++|+..|..+..+..|++.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3566666666666666666666666655

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.1e-05  Score=44.10  Aligned_cols=22  Identities=36%  Similarity=0.786  Sum_probs=8.7

Q ss_pred             ccccCccccchhhHHHHHHhhC
Q psy2875         479 CLYCFKVFVHKAHLDKHLILHE  500 (693)
Q Consensus       479 C~~C~k~f~~~~~L~~H~~~H~  500 (693)
                      |.+|||+|...+.|++|..+|+
T Consensus         5 c~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTS
T ss_pred             HHHHhHHHHHHHHHHHHhhccc
Confidence            3333333333333333333333

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.1e-05  Score=42.95  Aligned_cols=26  Identities=31%  Similarity=0.600  Sum_probs=17.7

Q ss_pred             cccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          28 FKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        28 ~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      ..|.+|||.|...+.|++|.. +|+++
T Consensus         3 hvc~ecgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGG-GTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhh-cccCC
Confidence            457777777777777777766 66654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=5.2e-05  Score=41.90  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=11.9

Q ss_pred             cccCcCcccccchhHHHHHHHhcCCC
Q psy2875         449 FHCPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       449 ~~C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      |.|++||......+.|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            34444444444444444444444443

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.4e-05  Score=41.54  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=18.4

Q ss_pred             ccccccccccCChhHHHHHHHhhcCC
Q psy2875          57 YKCKLCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        57 ~~C~~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      |.|+.||......+-|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            66777777777777777777777665

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.9e-05  Score=40.72  Aligned_cols=25  Identities=28%  Similarity=0.604  Sum_probs=12.7

Q ss_pred             CccccCcCcccccchhHHHHHHHhc
Q psy2875         447 KVFHCPKCPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       447 ~~~~C~~C~k~f~~~~~L~~H~~~H  471 (693)
                      +||+|..|+++-...++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4455555555555555555555544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.8e-05  Score=42.23  Aligned_cols=16  Identities=38%  Similarity=0.688  Sum_probs=6.3

Q ss_pred             CcccccchhHHHHHHH
Q psy2875         454 CPKLFRHESHLQNHVI  469 (693)
Q Consensus       454 C~k~f~~~~~L~~H~~  469 (693)
                      |+|++...++|+.|++
T Consensus        10 C~K~YtdPSSLRKH~k   25 (29)
T d2glia5          10 CTKRYTDPSSLRKHVK   25 (29)
T ss_dssp             TCCEESSHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHH
Confidence            3333333333333333

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.6e-05  Score=40.34  Aligned_cols=25  Identities=40%  Similarity=0.712  Sum_probs=13.7

Q ss_pred             CcccccccccccCChhHHHHHHHhh
Q psy2875          55 KKYKCKLCARMYRYKWNLKAHLKMH   79 (693)
Q Consensus        55 k~~~C~~C~~~f~~~~~L~~H~~~H   79 (693)
                      +||+|..|...-...++|..|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4555555555555555555555555

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0001  Score=41.48  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             Cceeccc--cCccccchhhHHHHHHhhCC
Q psy2875         475 EVHKCLY--CFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       475 ~~~~C~~--C~k~f~~~~~L~~H~~~H~~  501 (693)
                      +||.|.+  |+|+++..++|++|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5777877  78888888888888876654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.00014  Score=39.01  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=10.4

Q ss_pred             cCcCcccccchhHHHHHHHhcCCC
Q psy2875         451 CPKCPKLFRHESHLQNHVIVHDES  474 (693)
Q Consensus       451 C~~C~k~f~~~~~L~~H~~~H~~~  474 (693)
                      |+.|.++|.++..|+.|-+.|+|+
T Consensus         3 cp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             CcchHHHHHHhHhhhhccccccCC
Confidence            444444444444444444444443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00014  Score=38.95  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=14.4

Q ss_pred             eccccCccccchhhHHHHHHhhCCC
Q psy2875         478 KCLYCFKVFVHKAHLDKHLILHETS  502 (693)
Q Consensus       478 ~C~~C~k~f~~~~~L~~H~~~H~~~  502 (693)
                      +|+.|.++|.++..|+.|-|.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4555555555555555555555554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00021  Score=39.62  Aligned_cols=29  Identities=21%  Similarity=0.615  Sum_probs=21.9

Q ss_pred             cccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      +||.|..|.......++|+.|+...|..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            57888888888788888888877666654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.04  E-value=0.00019  Score=37.80  Aligned_cols=21  Identities=24%  Similarity=0.680  Sum_probs=11.5

Q ss_pred             ccccccccccCChHhHHHHHh
Q psy2875         534 HTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       534 ~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      |+|..|..+|..++.|.+|++
T Consensus         1 ykcglcersfveksalsrhqr   21 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR   21 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CcccchHHHHHHHHHHHHHHH
Confidence            445555555555555555555

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.78  E-value=0.0006  Score=35.87  Aligned_cols=23  Identities=43%  Similarity=0.941  Sum_probs=13.6

Q ss_pred             cccCCCCcccCChhhHHHHhhhcC
Q psy2875          28 FKCEMCPKSFDHKSNIRRHMAATH   51 (693)
Q Consensus        28 ~~C~~C~k~f~~~~~L~~H~~~~H   51 (693)
                      |+|..|.++|..++.|.+|++ +|
T Consensus         1 ykcglcersfveksalsrhqr-vh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR-VH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG-GT
T ss_pred             CcccchHHHHHHHHHHHHHHH-hh
Confidence            456666666666666666655 44

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00042  Score=38.38  Aligned_cols=29  Identities=28%  Similarity=0.690  Sum_probs=17.4

Q ss_pred             CcccccccccccCChHHHHhhhhccCCCC
Q psy2875         137 RRFKCPCCERIFTSETRMRNHIDMKHADE  165 (693)
Q Consensus       137 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~e  165 (693)
                      +||.|..|.+.....++|+.|++..|..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            35666666666666666666666555544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00038  Score=42.45  Aligned_cols=25  Identities=24%  Similarity=0.733  Sum_probs=15.9

Q ss_pred             CCCcccccCCCCcccCChhhHHHHh
Q psy2875          23 IQERKFKCEMCPKSFDHKSNIRRHM   47 (693)
Q Consensus        23 ~~~~~~~C~~C~k~f~~~~~L~~H~   47 (693)
                      ||-|||.|.+|+|.|-...++.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            3556666666666666666666664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00054  Score=37.62  Aligned_cols=27  Identities=33%  Similarity=0.618  Sum_probs=14.3

Q ss_pred             CcccCCcCcccCCChhHHHHHHhhhcC
Q psy2875         503 EMHNCDFCHLTFTTDNDLIRHMRSHEE  529 (693)
Q Consensus       503 ~~~~C~~C~~~f~~~~~L~~H~~~H~~  529 (693)
                      +-|.|.+|...|...-.|+.||.+|+|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccC
Confidence            345555555555555555555555554

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0003  Score=38.80  Aligned_cols=23  Identities=35%  Similarity=0.813  Sum_probs=16.7

Q ss_pred             ceeccccccccCCchhHHhhhhc
Q psy2875          84 IFTCAQCDKAFSLKSNLSKHVRH  106 (693)
Q Consensus        84 ~~~C~~C~~~F~~~~~L~~H~~~  106 (693)
                      ||.|..|..+|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57777777777777777777764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00048  Score=42.03  Aligned_cols=24  Identities=21%  Similarity=0.513  Sum_probs=11.9

Q ss_pred             CCCceeccccCccccchhhHHHHH
Q psy2875         473 ESEVHKCLYCFKVFVHKAHLDKHL  496 (693)
Q Consensus       473 ~~~~~~C~~C~k~f~~~~~L~~H~  496 (693)
                      |.+||.|..|+|.|.+..++.+|.
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhh
Confidence            444555555555555555554443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.65  E-value=0.00053  Score=38.90  Aligned_cols=27  Identities=22%  Similarity=0.629  Sum_probs=22.1

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCCC
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHDL   53 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~~   53 (693)
                      ||.|.+|++.|.....|.+|....|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            688888888888888888888777765

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0004  Score=39.38  Aligned_cols=27  Identities=30%  Similarity=0.608  Sum_probs=14.9

Q ss_pred             CccccCc--CcccccchhHHHHHH-HhcCC
Q psy2875         447 KVFHCPK--CPKLFRHESHLQNHV-IVHDE  473 (693)
Q Consensus       447 ~~~~C~~--C~k~f~~~~~L~~H~-~~H~~  473 (693)
                      +||.|++  |.|+|++.++-..|+ |+|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            3555544  666666655555554 55543

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.0008  Score=36.95  Aligned_cols=25  Identities=32%  Similarity=0.763  Sum_probs=10.4

Q ss_pred             cccCcCcccccchhHHHHHHHhcCC
Q psy2875         449 FHCPKCPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       449 ~~C~~C~k~f~~~~~L~~H~~~H~~  473 (693)
                      |.|..|...|+..-.|+.||..|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            3444444444444444444444433

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00063  Score=37.49  Aligned_cols=22  Identities=27%  Similarity=0.705  Sum_probs=11.4

Q ss_pred             ccccCcCcccccchhHHHHHHH
Q psy2875         448 VFHCPKCPKLFRHESHLQNHVI  469 (693)
Q Consensus       448 ~~~C~~C~k~f~~~~~L~~H~~  469 (693)
                      ||.|..|+.+|+++.+|..||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            4455555555555555555554

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.51  E-value=0.00077  Score=37.00  Aligned_cols=24  Identities=42%  Similarity=0.827  Sum_probs=13.3

Q ss_pred             ccccCc--CcccccchhHHHHHHHhc
Q psy2875         448 VFHCPK--CPKLFRHESHLQNHVIVH  471 (693)
Q Consensus       448 ~~~C~~--C~k~f~~~~~L~~H~~~H  471 (693)
                      ||+|+.  |++.|...+-|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            555543  555555555555555554

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.45  E-value=0.00077  Score=36.99  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=12.8

Q ss_pred             cccCCc--CcccCCChhHHHHHHhhh
Q psy2875         504 MHNCDF--CHLTFTTDNDLIRHMRSH  527 (693)
Q Consensus       504 ~~~C~~--C~~~f~~~~~L~~H~~~H  527 (693)
                      ||+|+.  |++.|+..+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455543  555555555555555544

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.45  E-value=0.00087  Score=40.84  Aligned_cols=28  Identities=25%  Similarity=0.694  Sum_probs=17.6

Q ss_pred             cccccCCCCcccCChhhHHHHhhhcCCCC
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMAATHDLQ   54 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   54 (693)
                      +.|+|.+|++.|.+..+|--||+ .|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~-~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMN-VHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH-TTCCS
T ss_pred             CccCCCCCCCccCCcccccchHh-hhcch
Confidence            45666666666666666666665 55443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.38  E-value=0.00082  Score=37.05  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=17.9

Q ss_pred             CcccCCc--CcccCCChhHHHHHHhhhcCC
Q psy2875         503 EMHNCDF--CHLTFTTDNDLIRHMRSHEEY  530 (693)
Q Consensus       503 ~~~~C~~--C~~~f~~~~~L~~H~~~H~~~  530 (693)
                      +||.|..  |++.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3566643  667777777777777666653

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.34  E-value=0.00099  Score=37.75  Aligned_cols=28  Identities=25%  Similarity=0.666  Sum_probs=25.1

Q ss_pred             ccccccccccCCChHHHHHHHhhhcCCC
Q psy2875         193 FYRCSECEKRFATEDIMRQHFRNYHNKE  220 (693)
Q Consensus       193 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  220 (693)
                      ||.|.+|+..|+.++.|.+|.++.|.|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            6889999999999999999999888763

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.0015  Score=39.73  Aligned_cols=24  Identities=25%  Similarity=0.564  Sum_probs=10.8

Q ss_pred             ceeccccCccccchhhHHHHHHhh
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      .|+|.+|++.|.+..+|--||+.|
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTT
T ss_pred             ccCCCCCCCccCCcccccchHhhh
Confidence            344444444444444444444444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00067  Score=38.47  Aligned_cols=27  Identities=33%  Similarity=0.757  Sum_probs=15.4

Q ss_pred             cccccCC--CCcccCChhhHHHHhhhcCC
Q psy2875          26 RKFKCEM--CPKSFDHKSNIRRHMAATHD   52 (693)
Q Consensus        26 ~~~~C~~--C~k~f~~~~~L~~H~~~~H~   52 (693)
                      |||.|..  |.|.|++.+.-..|+.++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            4566654  66666666666666533554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0013  Score=34.55  Aligned_cols=24  Identities=29%  Similarity=0.753  Sum_probs=18.6

Q ss_pred             ccccCCCCcccCChhhHHHHhhhc
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAAT   50 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~   50 (693)
                      ||+|..|+..|-.+..|..||...
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            788888888888888888887533

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0012  Score=36.51  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=20.9

Q ss_pred             CcccccchhhcCChHHHHHHhhhhcCC
Q psy2875         559 LFTCIHCGDTLNNAKDYASHLLIIHNI  585 (693)
Q Consensus       559 ~~~C~~C~~~f~~~~~l~~H~~~h~~~  585 (693)
                      ||+|+.|.....+.++|..|++..|+.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CcccceecccccCcchHHHHHHHHccC
Confidence            678888888888888888888776654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.04  E-value=0.0016  Score=35.92  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=9.8

Q ss_pred             CcccccchhHHHHHHHhcCC
Q psy2875         454 CPKLFRHESHLQNHVIVHDE  473 (693)
Q Consensus       454 C~k~f~~~~~L~~H~~~H~~  473 (693)
                      |.|.|.+...|.+|..+|+|
T Consensus        10 c~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhhhccccC
Confidence            44455444445444444444

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0018  Score=35.73  Aligned_cols=23  Identities=22%  Similarity=0.706  Sum_probs=10.6

Q ss_pred             cccCCcCcccCCChhHHHHHHhh
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMRS  526 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~~  526 (693)
                      ||+|+.|..-..+.++|..|++.
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHHH
Confidence            44444444444444444444443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0032  Score=33.07  Aligned_cols=22  Identities=23%  Similarity=0.677  Sum_probs=13.4

Q ss_pred             cccccccccccCChHhHHHHHh
Q psy2875         533 KHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       533 ~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      ||+|.-|...|..+..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.45  E-value=0.0033  Score=33.12  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=19.5

Q ss_pred             ccccccccccCChHhHHHHHhccCC
Q psy2875         534 HTCDICGEKFINDLKLKAHIKIIHN  558 (693)
Q Consensus       534 ~~C~~C~~~f~~~~~L~~H~~~~H~  558 (693)
                      |.|+.|-+.|.++..+..|.+++|+
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiihk   26 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIHK   26 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCchhhHHhccccCceEEEEEecC
Confidence            6788888888888888888877663

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0053  Score=33.34  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=14.9

Q ss_pred             ceeccccCccccchhhHHHHHHhh
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILH  499 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H  499 (693)
                      |-+|+.|.++..++..|+.|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            445666666666666666666665

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.012  Score=35.41  Aligned_cols=15  Identities=33%  Similarity=0.596  Sum_probs=5.6

Q ss_pred             cCccccchhhHHHHH
Q psy2875         482 CFKVFVHKAHLDKHL  496 (693)
Q Consensus       482 C~k~f~~~~~L~~H~  496 (693)
                      |+.+|.+...|..|.
T Consensus        14 C~q~F~neDhL~vHk   28 (38)
T d1bhia_          14 CGQRFTNEDHLAVHK   28 (38)
T ss_dssp             TCCEESSHHHHHHHH
T ss_pred             ccccccchHHHHHhh
Confidence            333333333333333

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.54  E-value=0.0099  Score=32.00  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=13.6

Q ss_pred             cccccccccccCChHhHHHHHh
Q psy2875         533 KHTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       533 ~~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      ||+|..||+.+.++..|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5666666666666666666643

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.013  Score=35.20  Aligned_cols=28  Identities=39%  Similarity=0.716  Sum_probs=21.9

Q ss_pred             CCCcccc--CcCcccccchhHHHHHHHhcC
Q psy2875         445 KVKVFHC--PKCPKLFRHESHLQNHVIVHD  472 (693)
Q Consensus       445 ~~~~~~C--~~C~k~f~~~~~L~~H~~~H~  472 (693)
                      .+|||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4788888  568888888888888877664

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.015  Score=31.50  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=15.2

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcC
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATH   51 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H   51 (693)
                      |-+|++|+.+.+++..|+.|.+ +|
T Consensus         2 pekc~ecsyscsskaalrvh~r-ih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHER-IH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG-GG
T ss_pred             CccCcccccccCcHHHHHHhhc-cc
Confidence            3456666666666666666665 54

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.016  Score=31.32  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=16.5

Q ss_pred             ccccccccccCChHhHHHHHhccC
Q psy2875         534 HTCDICGEKFINDLKLKAHIKIIH  557 (693)
Q Consensus       534 ~~C~~C~~~f~~~~~L~~H~~~~H  557 (693)
                      |+|+.|+-...++++|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            667777777777777777776554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.82  E-value=0.018  Score=30.29  Aligned_cols=24  Identities=33%  Similarity=0.789  Sum_probs=18.8

Q ss_pred             cccCCCCcccCChhhHHHHhhhcC
Q psy2875          28 FKCEMCPKSFDHKSNIRRHMAATH   51 (693)
Q Consensus        28 ~~C~~C~k~f~~~~~L~~H~~~~H   51 (693)
                      |.|+.|-+.|+.+.++..|...+|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888888877555

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.39  E-value=0.03  Score=30.07  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=13.8

Q ss_pred             cccCCcCcccCCChhHHHHHHh
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMR  525 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~  525 (693)
                      ||+|..||+.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5666666666666666666643

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.033  Score=30.02  Aligned_cols=24  Identities=29%  Similarity=0.690  Sum_probs=14.4

Q ss_pred             cccCCCCcccCChhhHHHHhhhcC
Q psy2875          28 FKCEMCPKSFDHKSNIRRHMAATH   51 (693)
Q Consensus        28 ~~C~~C~k~f~~~~~L~~H~~~~H   51 (693)
                      |.|+.|+.....++.|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            556666666666666666665444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.036  Score=34.94  Aligned_cols=25  Identities=32%  Similarity=0.612  Sum_probs=19.9

Q ss_pred             cccCCcCcccCCChhHHHHHHhhhc
Q psy2875         504 MHNCDFCHLTFTTDNDLIRHMRSHE  528 (693)
Q Consensus       504 ~~~C~~C~~~f~~~~~L~~H~~~H~  528 (693)
                      .|.|..|||.|+....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4778888888888888888887773

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.28  E-value=0.029  Score=32.34  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=17.7

Q ss_pred             CcccccchhhcCChHHHHHHhhhhcC
Q psy2875         559 LFTCIHCGDTLNNAKDYASHLLIIHN  584 (693)
Q Consensus       559 ~~~C~~C~~~f~~~~~l~~H~~~h~~  584 (693)
                      .|.|..||++|..+..+.+|-..-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            36777777777777777777655443

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.053  Score=31.80  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=12.1

Q ss_pred             cccCCChhHHHHHHhhhcCC
Q psy2875         511 HLTFTTDNDLIRHMRSHEEY  530 (693)
Q Consensus       511 ~~~f~~~~~L~~H~~~H~~~  530 (693)
                      ++.|.....|..|||+|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            34466666666666666653

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.074  Score=33.45  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=17.2

Q ss_pred             cccCCCCccccCChHHHHHHHHhc
Q psy2875         420 FHKCTQCEESFKNKKHLKQHLLAH  443 (693)
Q Consensus       420 ~~~C~~C~k~f~~~~~L~~H~~~h  443 (693)
                      .|.|..|+|.|.....|++|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            466777777777777777776655

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.062  Score=31.51  Aligned_cols=20  Identities=25%  Similarity=0.576  Sum_probs=14.6

Q ss_pred             ccccCChhHHHHHHHhhcCC
Q psy2875          63 ARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        63 ~~~f~~~~~L~~H~~~H~~~   82 (693)
                      ++.|..+..|..|||+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            44577777788888888775

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.17  E-value=0.082  Score=30.09  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=13.8

Q ss_pred             ccccccccccCChHhHHHHHh
Q psy2875         534 HTCDICGEKFINDLKLKAHIK  554 (693)
Q Consensus       534 ~~C~~C~~~f~~~~~L~~H~~  554 (693)
                      |.|+-||-.|++.+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            666666666666666666654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.14  Score=29.43  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=16.6

Q ss_pred             ceeccccCccccchhhHHHHHHhhCC
Q psy2875         476 VHKCLYCFKVFVHKAHLDKHLILHET  501 (693)
Q Consensus       476 ~~~C~~C~k~f~~~~~L~~H~~~H~~  501 (693)
                      .|.|..|||+|+....+.+|...-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            46677777777777666666655444

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.00  E-value=0.13  Score=28.69  Aligned_cols=28  Identities=43%  Similarity=0.958  Sum_probs=20.9

Q ss_pred             Cccccc--ccccccCChhHHHHHHHhhcCC
Q psy2875          55 KKYKCK--LCARMYRYKWNLKAHLKMHKGP   82 (693)
Q Consensus        55 k~~~C~--~C~~~f~~~~~L~~H~~~H~~~   82 (693)
                      +.|.|.  .|+..|...-.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            346675  4888888888888888888775

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.72  E-value=0.14  Score=29.15  Aligned_cols=23  Identities=30%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             cccccCCCCcccCChhhHHHHhh
Q psy2875          26 RKFKCEMCPKSFDHKSNIRRHMA   48 (693)
Q Consensus        26 ~~~~C~~C~k~f~~~~~L~~H~~   48 (693)
                      -.|.|.-||-.|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35889999999999999988864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.21  E-value=0.14  Score=28.59  Aligned_cols=27  Identities=22%  Similarity=0.485  Sum_probs=16.8

Q ss_pred             cccCCc--CcccCCChhHHHHHHhhhcCC
Q psy2875         504 MHNCDF--CHLTFTTDNDLIRHMRSHEEY  530 (693)
Q Consensus       504 ~~~C~~--C~~~f~~~~~L~~H~~~H~~~  530 (693)
                      .|.|..  |+..|+....|..|.-.|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            455543  666666666666666666653

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.84  E-value=0.23  Score=27.14  Aligned_cols=25  Identities=40%  Similarity=0.818  Sum_probs=15.9

Q ss_pred             cccccchhhcCChHHHHHHhhhhcC
Q psy2875         560 FTCIHCGDTLNNAKDYASHLLIIHN  584 (693)
Q Consensus       560 ~~C~~C~~~f~~~~~l~~H~~~h~~  584 (693)
                      |.|..||+...+...++.|+..-|+
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            5666666666666666666554443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=0.47  Score=25.87  Aligned_cols=26  Identities=27%  Similarity=0.665  Sum_probs=21.3

Q ss_pred             ccccCCCCcccCChhhHHHHhhhcCC
Q psy2875          27 KFKCEMCPKSFDHKSNIRRHMAATHD   52 (693)
Q Consensus        27 ~~~C~~C~k~f~~~~~L~~H~~~~H~   52 (693)
                      .|.|..|||...+...++.|+...|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            37889999999999999988776664

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.37  E-value=0.31  Score=28.11  Aligned_cols=29  Identities=31%  Similarity=0.827  Sum_probs=21.9

Q ss_pred             CCcccccCCCCcccCChhhHHHHhhhcCC
Q psy2875          24 QERKFKCEMCPKSFDHKSNIRRHMAATHD   52 (693)
Q Consensus        24 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   52 (693)
                      |+-.|.|.+|.++++..+++-+|....|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            34468888888888888888888765553

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.32  Score=33.41  Aligned_cols=40  Identities=20%  Similarity=0.610  Sum_probs=25.0

Q ss_pred             cCCCcccccCCCCcccCChhhHHHHhhhcCCCCCcccccccccc
Q psy2875          22 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARM   65 (693)
Q Consensus        22 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~~~   65 (693)
                      .+...-|+|+.|+++|+....+.. +   -.....|.|..|+-.
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~~L-~---d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEANQL-F---DPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHHH-E---ETTTTEEBCSSSCCB
T ss_pred             cccCCceECCCCCCCcchhhHHHh-c---CcCCCeEEecCCCCE
Confidence            344566888888888877766543 2   122345778777654

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.15  E-value=0.49  Score=29.49  Aligned_cols=30  Identities=27%  Similarity=0.532  Sum_probs=23.2

Q ss_pred             CCCcccccCCCCcccCChhhHHHHhhhcCC
Q psy2875          23 IQERKFKCEMCPKSFDHKSNIRRHMAATHD   52 (693)
Q Consensus        23 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   52 (693)
                      ..|.|-.|++|+....++.+|++|+...|-
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            356788888888888888888888765553

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.30  E-value=0.66  Score=28.91  Aligned_cols=24  Identities=21%  Similarity=0.534  Sum_probs=11.3

Q ss_pred             CCcccCCcCcccCCChhHHHHHHh
Q psy2875         502 SEMHNCDFCHLTFTTDNDLIRHMR  525 (693)
Q Consensus       502 ~~~~~C~~C~~~f~~~~~L~~H~~  525 (693)
                      ++|-.|++|+....++.+|++|..
T Consensus        22 ~qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=0.46  Score=32.54  Aligned_cols=11  Identities=36%  Similarity=0.818  Sum_probs=4.3

Q ss_pred             eeccccCcccc
Q psy2875         477 HKCLYCFKVFV  487 (693)
Q Consensus       477 ~~C~~C~k~f~  487 (693)
                      |.|+.|+++|+
T Consensus        15 y~Cp~C~~~ys   25 (62)
T d1vd4a_          15 FKCPVCSSTFT   25 (62)
T ss_dssp             EECSSSCCEEE
T ss_pred             eECCCCCCCcc
Confidence            33444443333