Psyllid ID: psy2921

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSK
ccccEEEEEcccccccccccccccEEEcccccccEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEccccEEEcccccccEEEEEcccccEEccccccc
ccccEEEEEEccccccccccccccEEEEEccccEEEEEEccccccccccccccccccHcEEEEEEEEccccccHHHHcHHHHHHcccccHHcHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEccHcccccccccEEEEEEccccccccccccccEEEEEccccEEEEEEcccccccccccccc
DGGHRAVIFDRFTGiknavvgegthffvpwvqrpvifdirsrprnvpvitgskggsemdtVVLIPTLlfkkgsisnqlPKIFSMLgvdydervlpsITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFgvilddisithltfgkEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSrsrqvsylpsgnnilfnrsytsnemdgghrAVIFDRFTGiknavvgegthffvpwvqrpvifdirsrprnvpvitgsk
DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRpvifdirsrprnvpvitgskggsemdtVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDAselitqrelvsqkvnEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAyqlsrsrqvsylpsgnnILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRpvifdirsrprnvpvitgsk
DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSK
*****AVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQV******************************************AGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRS************
DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNV*******GGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQ**************************************************GDGLVELRRIEAAE****************SGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNV*******
DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVE**********ISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSK
**GHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRP**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELxxxxxxxxxxxxxxxxxxxxxKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
P24156276 Protein l(2)37Cc OS=Droso yes N/A 0.796 0.880 0.737 1e-100
P84173272 Prohibitin OS=Gallus gall yes N/A 0.783 0.878 0.692 3e-98
P35232272 Prohibitin OS=Homo sapien yes N/A 0.783 0.878 0.692 3e-97
Q3T165272 Prohibitin OS=Bos taurus yes N/A 0.783 0.878 0.692 3e-97
P67779272 Prohibitin OS=Rattus norv yes N/A 0.783 0.878 0.688 5e-97
P67778272 Prohibitin OS=Mus musculu yes N/A 0.783 0.878 0.688 5e-97
Q9BKU4275 Mitochondrial prohibitin yes N/A 0.783 0.869 0.631 2e-80
Q54GI9271 Prohibitin-1, mitochondri yes N/A 0.780 0.878 0.557 2e-75
P40961287 Prohibitin-1 OS=Saccharom yes N/A 0.757 0.804 0.563 7e-75
Q9P7H3282 Prohibitin-1 OS=Schizosac yes N/A 0.780 0.843 0.523 5e-73
>sp|P24156|L2CC_DROME Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2)37Cc PE=2 SV=2 Back     alignment and function desciption
 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/248 (73%), Positives = 213/248 (85%), Gaps = 5/248 (2%)

Query: 1   DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDT 60
           +GGHRAVIFDRFTGIK  VVGEGTHFF+PWVQRP+IFDIRS+PRNVPVITGSK   ++  
Sbjct: 31  EGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK---DLQN 87

Query: 61  VVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQREL 120
           V +   +L++   I +QLPKI+++LG DYDERVLPSI  EVLKAVVAQFDA ELITQRE+
Sbjct: 88  VNITLRILYR--PIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREM 145

Query: 121 VSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQ 180
           VSQ+V+++LT RAK+FG ILDDIS+THLTFG+EFT AVE+KQVAQQEAEKARF+VEKAEQ
Sbjct: 146 VSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKARFVVEKAEQ 205

Query: 181 SKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNN 240
            K A+IISAEGDA+AA L++KS  EAGDGLVELRRIEAAE IAYQLSRSR V+YLPSG +
Sbjct: 206 QKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQLSRSRGVAYLPSGQS 265

Query: 241 ILFNRSYT 248
            L N   T
Sbjct: 266 TLLNLPST 273
Required for larval metabolism or for the progression of the larva into a pupa.
Drosophila melanogaster (taxid: 7227)
>sp|P84173|PHB_CHICK Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1 Back     alignment and function description
>sp|P35232|PHB_HUMAN Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1 Back     alignment and function description
>sp|Q3T165|PHB_BOVIN Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1 Back     alignment and function description
>sp|P67779|PHB_RAT Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1 Back     alignment and function description
>sp|P67778|PHB_MOUSE Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1 Back     alignment and function description
>sp|Q9BKU4|PHB1_CAEEL Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans GN=phb-1 PE=1 SV=1 Back     alignment and function description
>sp|Q54GI9|PHB1_DICDI Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1 Back     alignment and function description
>sp|P40961|PHB1_YEAST Prohibitin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHB1 PE=1 SV=2 Back     alignment and function description
>sp|Q9P7H3|PHB1_SCHPO Prohibitin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=phb1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
307182720273 Protein l(2)37Cc [Camponotus floridanus] 0.790 0.882 0.780 1e-106
242021159266 hypothetical protein, conserved [Pedicul 0.773 0.887 0.779 1e-106
307192234272 Protein l(2)37Cc [Harpegnathos saltator] 0.783 0.878 0.778 1e-105
48097857271 PREDICTED: protein l(2)37Cc-like [Apis m 0.783 0.881 0.786 1e-105
380013667289 PREDICTED: protein l(2)37Cc-like [Apis f 0.783 0.826 0.786 1e-104
322793661276 hypothetical protein SINV_03310 [Solenop 0.783 0.865 0.774 1e-104
91082327276 PREDICTED: similar to prohibitin protein 0.803 0.887 0.76 1e-104
156538068272 PREDICTED: protein l(2)37Cc-like isoform 0.783 0.878 0.782 1e-104
332376699276 unknown [Dendroctonus ponderosae] 0.783 0.865 0.770 1e-104
357609697274 prohibitin protein WPH [Danaus plexippus 0.783 0.872 0.766 1e-103
>gi|307182720|gb|EFN69844.1| Protein l(2)37Cc [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/246 (78%), Positives = 221/246 (89%), Gaps = 5/246 (2%)

Query: 1   DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDT 60
           DGGHRAVIFDRF GIKNAV+GEGTHFF+PWVQ+P+IFDIRSRPRNVPVITGSK   ++  
Sbjct: 32  DGGHRAVIFDRFAGIKNAVIGEGTHFFIPWVQKPIIFDIRSRPRNVPVITGSK---DLQN 88

Query: 61  VVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQREL 120
           V +   +LF+   + + LPKI+++LGVDYDERVLPSITTEVLKAVVAQFDA ELITQREL
Sbjct: 89  VNITLRILFR--PVPDSLPKIYTILGVDYDERVLPSITTEVLKAVVAQFDAGELITQREL 146

Query: 121 VSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQ 180
           VSQKV++DLT+RA +FG+ILDDISITHLTFGKEFTQAVELKQVAQQ+AEKARFLVEKAEQ
Sbjct: 147 VSQKVSDDLTDRASQFGLILDDISITHLTFGKEFTQAVELKQVAQQDAEKARFLVEKAEQ 206

Query: 181 SKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNN 240
            K+AA+ISAEGDAQAA L++KSL EAGDGLVELRRIEAAE IA+ +S+SRQVSYLP+G N
Sbjct: 207 QKKAAVISAEGDAQAASLLAKSLAEAGDGLVELRRIEAAEDIAFNMSKSRQVSYLPTGLN 266

Query: 241 ILFNRS 246
           +L N S
Sbjct: 267 VLLNLS 272

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242021159|ref|XP_002431013.1| hypothetical protein, conserved [Pediculus humanus corporis] gi|212516242|gb|EEB18275.1| hypothetical protein, conserved [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307192234|gb|EFN75536.1| Protein l(2)37Cc [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|48097857|ref|XP_391959.1| PREDICTED: protein l(2)37Cc-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380013667|ref|XP_003690872.1| PREDICTED: protein l(2)37Cc-like [Apis florea] Back     alignment and taxonomy information
>gi|322793661|gb|EFZ17099.1| hypothetical protein SINV_03310 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|91082327|ref|XP_974606.1| PREDICTED: similar to prohibitin protein WPH [Tribolium castaneum] gi|270007186|gb|EFA03634.1| hypothetical protein TcasGA2_TC013727 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|156538068|ref|XP_001607498.1| PREDICTED: protein l(2)37Cc-like isoform 1 [Nasonia vitripennis] gi|345491520|ref|XP_003426632.1| PREDICTED: protein l(2)37Cc-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332376699|gb|AEE63489.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|357609697|gb|EHJ66584.1| prohibitin protein WPH [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
FB|FBgn0002031276 l(2)37Cc "lethal (2) 37Cc" [Dr 0.783 0.865 0.745 1.9e-90
ZFIN|ZDB-GENE-030131-6577309 phb "prohibitin" [Danio rerio 0.777 0.766 0.723 3.6e-89
UNIPROTKB|F1NBJ6243 LOC100859114 "Uncharacterized 0.777 0.975 0.698 1.2e-88
UNIPROTKB|G1K2Y6275 LOC100859114 "Uncharacterized 0.777 0.861 0.698 1.2e-88
UNIPROTKB|P84173272 PHB "Prohibitin" [Gallus gallu 0.777 0.871 0.698 1.2e-88
UNIPROTKB|Q3T165272 PHB "Prohibitin" [Bos taurus ( 0.777 0.871 0.698 5.3e-88
UNIPROTKB|P35232272 PHB "Prohibitin" [Homo sapiens 0.777 0.871 0.698 5.3e-88
UNIPROTKB|F2Z543274 LOC100524707 "Uncharacterized 0.777 0.864 0.698 5.3e-88
MGI|MGI:97572272 Phb "prohibitin" [Mus musculus 0.777 0.871 0.694 1.1e-87
RGD|3322272 Phb "prohibitin" [Rattus norve 0.777 0.871 0.694 1.1e-87
FB|FBgn0002031 l(2)37Cc "lethal (2) 37Cc" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 182/244 (74%), Positives = 212/244 (86%)

Query:     1 DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDT 60
             +GGHRAVIFDRFTGIK  VVGEGTHFF+PWVQRP+IFDIRS+PRNVPVITGSK   ++  
Sbjct:    31 EGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSK---DLQN 87

Query:    61 VVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQREL 120
             V +   +L++   I +QLPKI+++LG DYDERVLPSI  EVLKAVVAQFDA ELITQRE+
Sbjct:    88 VNITLRILYRP--IPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREM 145

Query:   121 VSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQ 180
             VSQ+V+++LT RAK+FG ILDDIS+THLTFG+EFT AVE+KQVAQQEAEKARF+VEKAEQ
Sbjct:   146 VSQRVSQELTVRAKQFGFILDDISLTHLTFGREFTLAVEMKQVAQQEAEKARFVVEKAEQ 205

Query:   181 SKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGNN 240
              K A+IISAEGDA+AA L++KS  EAGDGLVELRRIEAAE IAYQLSRSR V+YLPSG +
Sbjct:   206 QKLASIISAEGDAEAAGLLAKSFGEAGDGLVELRRIEAAEDIAYQLSRSRGVAYLPSGQS 265

Query:   241 ILFN 244
              L N
Sbjct:   266 TLLN 269
GO:0005740 "mitochondrial envelope" evidence=NAS
GO:0005739 "mitochondrion" evidence=ISS;IDA
GO:0002165 "instar larval or pupal development" evidence=NAS
GO:0016020 "membrane" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005811 "lipid particle" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0071456 "cellular response to hypoxia" evidence=IMP
ZFIN|ZDB-GENE-030131-6577 phb "prohibitin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBJ6 LOC100859114 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G1K2Y6 LOC100859114 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P84173 PHB "Prohibitin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T165 PHB "Prohibitin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P35232 PHB "Prohibitin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z543 LOC100524707 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:97572 Phb "prohibitin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3322 Phb "prohibitin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04331PHB3_ARATHNo assigned EC number0.55140.78030.8592yesN/A
P35232PHB_HUMANNo assigned EC number0.69260.78360.8786yesN/A
Q9P7H3PHB1_SCHPONo assigned EC number0.52360.78030.8439yesN/A
Q9BKU4PHB1_CAEELNo assigned EC number0.63110.78360.8690yesN/A
Q3T165PHB_BOVINNo assigned EC number0.69260.78360.8786yesN/A
P67779PHB_RATNo assigned EC number0.68850.78360.8786yesN/A
P67778PHB_MOUSENo assigned EC number0.68850.78360.8786yesN/A
P40961PHB1_YEASTNo assigned EC number0.56350.75730.8048yesN/A
P84173PHB_CHICKNo assigned EC number0.69260.78360.8786yesN/A
P24156L2CC_DROMENo assigned EC number0.73790.79670.8804yesN/A
Q54GI9PHB1_DICDINo assigned EC number0.55730.78030.8782yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 1e-102
smart00244160 smart00244, PHB, prohibitin homologues 5e-26
cd03401 196 cd03401, Band_7_prohibitin, Band_7_prohibitin 2e-24
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 5e-23
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 8e-22
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 4e-15
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 5e-14
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 1e-12
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-07
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 3e-05
smart00244 160 smart00244, PHB, prohibitin homologues 9e-05
TIGR01932317 TIGR01932, hflC, HflC protein 0.002
cd03406280 cd03406, Band_7_3, A subgroup of the band 7 domain 0.002
COG2268 548 COG2268, COG2268, Uncharacterized protein conserve 0.004
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information 
 Score =  297 bits (762), Expect = e-102
 Identities = 127/196 (64%), Positives = 156/196 (79%), Gaps = 5/196 (2%)

Query: 1   DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDT 60
           DGGHRAV+F+R  G+K+ V GEG HF +PW Q+P+IFD+R+RPRN+   TGSK   ++  
Sbjct: 6   DGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSK---DLQM 62

Query: 61  VVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQREL 120
           V +   +LF+    ++QLP+I+  LG DYDERVLPSI  EVLKAVVAQF A ELITQRE 
Sbjct: 63  VNITLRVLFR--PDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120

Query: 121 VSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQ 180
           VS  + E LTERAK FG+ILDD+SITHLTF KEFT+AVE KQVAQQEAE+A+F+VEKAEQ
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180

Query: 181 SKQAAIISAEGDAQAA 196
            KQAA+I AEG+A+AA
Sbjct: 181 EKQAAVIRAEGEAEAA 196

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|233644 TIGR01932, hflC, HflC protein Back     alignment and domain information
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
KOG3090|consensus290 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
KOG3083|consensus271 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.97
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.97
KOG2621|consensus288 99.97
KOG2620|consensus301 99.96
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.95
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.94
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.85
KOG2962|consensus322 99.85
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.79
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.7
KOG3090|consensus 290 99.68
KOG2668|consensus 428 99.64
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.63
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.52
KOG3083|consensus 271 99.38
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.15
cd03406 280 Band_7_3 A subgroup of the band 7 domain of flotil 98.99
PRK11029 334 FtsH protease regulator HflC; Provisional 98.8
TIGR01932 317 hflC HflC protein. HflK and HflC are paralogs enco 98.62
PRK10930 419 FtsH protease regulator HflK; Provisional 98.38
smart00244 160 PHB prohibitin homologues. prohibitin homologues 98.36
PTZ00491850 major vault protein; Provisional 98.3
cd03404 266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 98.28
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.22
COG0330 291 HflC Membrane protease subunits, stomatin/prohibit 97.53
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 97.51
PRK13665316 hypothetical protein; Provisional 97.5
KOG2962|consensus 322 96.67
KOG2621|consensus 288 96.12
cd03408 207 Band_7_5 A subgroup of the band 7 domain of flotil 95.9
COG4864328 Uncharacterized protein conserved in bacteria [Fun 95.23
COG1580159 FliL Flagellar basal body-associated protein [Cell 94.7
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 93.73
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 93.26
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 91.35
PF0374899 FliL: Flagellar basal body-associated protein FliL 90.19
PRK06654181 fliL flagellar basal body-associated protein FliL; 87.47
COG2268548 Uncharacterized protein conserved in bacteria [Fun 87.47
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 86.76
PRK07718142 fliL flagellar basal body-associated protein FliL; 83.95
PRK05697137 flagellar basal body-associated protein FliL-like 82.94
PRK12785166 fliL flagellar basal body-associated protein FliL; 80.31
>KOG3090|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.5e-40  Score=275.19  Aligned_cols=233  Identities=55%  Similarity=0.863  Sum_probs=225.4

Q ss_pred             CCCeEEEEEecccCcceeeecCceEEEcccccceEEEEeeeeeeecceeeecCCCCcceeEEEEEEEEEEECCCCCCHHH
Q psy2921           1 DGGHRAVIFDRFTGIKNAVVGEGTHFFVPWVQRPVIFDIRSRPRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPK   80 (305)
Q Consensus         1 ~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~TkDg~~~~~v~v~~~v~yri~~~~~~~~~   80 (305)
                      |.||++++|+|+|++++.++..|.||.+|||++...+|+|-+++.+...+.|+|   -+-|+|.+.|.-|.  +++.++.
T Consensus        42 dgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskD---LQmVnI~lRVLsRP--~~~~Lp~  116 (290)
T KOG3090|consen   42 DGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKD---LQMVNIGLRVLSRP--MADQLPE  116 (290)
T ss_pred             cCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcc---eeEEEeeeEEecCC--ChhhhHH
Confidence            689999999999999989999999999999999999999999999999999999   89999999999999  9999999


Q ss_pred             HHHHhcCcccccccchhHHHHHHHHhccCChHHHhhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHHHHHHHHH
Q psy2921          81 IFSMLGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVEL  160 (305)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~lr~~~~~~~~~e~~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~i~~ai~~  160 (305)
                      +|+++|.||.++.|-+++.+.++.++++|+..++++.|++++..|++.|.++..++.|.+++|.|+.+.+.+++-.|++.
T Consensus       117 iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEa  196 (290)
T KOG3090|consen  117 IYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEA  196 (290)
T ss_pred             HHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccCCceeeecCcc
Q psy2921         161 KQVAQQEAEKARFLVEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSYLPSGN  239 (305)
Q Consensus       161 ~~~A~qeae~~~~~i~~Aeaea~a~i~~Ae~eA~a~~~~a~a~~~~~~~~~~~~~lea~~~~~~~l~~~~~~iil~~~~  239 (305)
                      ||+|+|||+||+.-++.|+++++..+++|||||++++++.+|+.+ +|.++.+|.+++.+++++-++...+.++++.+.
T Consensus       197 KQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~n-n~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~  274 (290)
T KOG3090|consen  197 KQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-NPAFITLRKIEAAREIAQTIASSANKVYLSSDD  274 (290)
T ss_pred             HHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-CccceeehhHHHHHHHHHHHhcCCCeEEecccc
Confidence            999999999999999999999999999999999999999999998 999999999999999999888888888887764

>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2621|consensus Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3090|consensus Back     alignment and domain information
>KOG2668|consensus Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>KOG2621|consensus Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 7e-05
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 7e-07
 Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 66/302 (21%)

Query: 31  VQRPVI---FDIRSR----PRNVPVITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFS 83
           VQ       F++  +     R   V       +     +   ++      + + L K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-- 310

Query: 84  MLGVDYDERVLP-----------SITTEVLKAVVAQFDASELITQREL---VSQKVN--- 126
            L     +  LP           SI  E ++  +A +D  + +   +L   +   +N   
Sbjct: 311 -LDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 127 -EDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEK--ARFLVEKAEQSKQ 183
             +  +   R  V      I  +     +   ++          K     LVEK  Q K+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEK--QPKE 423

Query: 184 AAIISAEGDAQAAQL--ISKSLTEAGDGLVELRR--IEAAESIAYQLSRSRQVSYL--PS 237
           + I           +  I   L    +    L R  ++      Y + ++     L  P 
Sbjct: 424 STI----------SIPSIYLELKVKLENEYALHRSIVD-----HYNIPKTFDSDDLIPPY 468

Query: 238 GNNILFN------RSYTSNEMDGGHRAVIFD-RFTGIKNAVVGEGTHFFVPWVQRPVIFD 290
            +   ++      ++    E     R V  D RF  ++  +  + T +         +  
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQ 526

Query: 291 IR 292
           ++
Sbjct: 527 LK 528
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.96
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.9
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.84
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.7
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.38
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.96  E-value=2.7e-28  Score=206.00  Aligned_cols=173  Identities=21%  Similarity=0.302  Sum_probs=143.6

Q ss_pred             cccceEEEEeeeeeeecce-eeecCCCCcceeEEEEEEEEEEECCCCCCHHHHHHHhcCcccccccchhHHHHHHHHhcc
Q psy2921          30 WVQRPVIFDIRSRPRNVPV-ITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQ  108 (305)
Q Consensus        30 ~~~~v~~~~~~~~~~~~~~-~~~TkDg~~~~~v~v~~~v~yri~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~  108 (305)
                      |++++..+|+|.++++++. .+.|+|   +++|.++++++||| .||   ..++.+ ..++.+. +.+.+++++|+++|+
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD---~~~V~v~~~v~yrI-~dp---~~~~~~-v~~~~~~-i~~~~~~~lR~vig~   72 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKD---NVPVRVNAVVYFRV-VDP---VKAVTQ-VKNYIMA-TSQISQTTLRSVIGQ   72 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTT---SCEEEEEEEEEEEE-SCH---HHHHHS-SSCHHHH-HHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCC---CCEEEEEEEEEEEE-CCH---HHHHHH-hcCHHHH-HHHHHHHHHHHHHcc
Confidence            5789999999999999876 469999   78999999999999 443   344432 2455554 889999999999999


Q ss_pred             CChHHHhhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2921         109 FDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIIS  188 (305)
Q Consensus       109 ~~~~e~~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A~qeae~~~~~i~~Aeaea~a~i~~  188 (305)
                      |+++|++++|++|+..+.+.|++.+++|||.|.+|.|++|.||+++.++|++++.              |+.++++.+++
T Consensus        73 ~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~--------------Aere~~A~i~~  138 (188)
T 3bk6_A           73 AHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAE--------------AERERRARITL  138 (188)
T ss_dssp             SCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987542              56677888999


Q ss_pred             hHHHHHHHHHHHHhhcc--cCchhHHHHHHHHHHHHHHH
Q psy2921         189 AEGDAQAAQLISKSLTE--AGDGLVELRRIEAAESIAYQ  225 (305)
Q Consensus       189 Ae~eA~a~~~~a~a~~~--~~~~~~~~~~lea~~~~~~~  225 (305)
                      |+|+++|++++++|...  .+|.++++|+||++.+++..
T Consensus       139 Aege~~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~~  177 (188)
T 3bk6_A          139 AEAERQAAEKLREAAEIISEHPMALQLRTLQTISDVAGD  177 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTHHHHHHTTC-------
T ss_pred             hHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence            99999999999887532  38999999999999999874
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 7e-08
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (115), Expect = 7e-08
 Identities = 10/84 (11%), Positives = 31/84 (36%)

Query: 85  LGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDIS 144
             V   + V+       L++++      ++   R+  ++ V E       R G+ +   +
Sbjct: 59  KNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFT 118

Query: 145 ITHLTFGKEFTQAVELKQVAQQEA 168
           I  +    ++  ++   Q +   +
Sbjct: 119 IKDVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.76
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.8e-19  Score=143.28  Aligned_cols=128  Identities=9%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             ceEEEEeeeeeeeccee-eecCCCCcceeEEEEEEEEEEECCCCCCH-HHHHHHhc---CcccccccchhHHHHHHHHhc
Q psy2921          33 RPVIFDIRSRPRNVPVI-TGSKGGSEMDTVVLIPTLLFKKGSISNQL-PKIFSMLG---VDYDERVLPSITTEVLKAVVA  107 (305)
Q Consensus        33 ~v~~~~~~~~~~~~~~~-~~TkDg~~~~~v~v~~~v~yri~~~~~~~-~~~~~~~~---~~~~~~~l~~~~~~~lr~~~~  107 (305)
                      .++++|++.++++++.+ +.|+|   +.++.|+++++||| .+|... ......|.   .+..+..+++.+++++|+++|
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD---~v~v~V~a~v~~rV-~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig   81 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAE---GVALTVTGVAQVKI-MTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG   81 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSS---SCEEEECCEEEEEE-CCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEeeeeEEeecCCCceEECCC---CCEEEEEEEEEEEE-cCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            56788999999999886 48999   78999999999999 444432 22222232   234556699999999999999


Q ss_pred             cCChHHHhhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHHHHHHHHHHHHH
Q psy2921         108 QFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVA  164 (305)
Q Consensus       108 ~~~~~e~~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A  164 (305)
                      +|++++++++|++|++.+.+.+++.+++||++|.++.|+||.+|++|.+||.+++.|
T Consensus        82 ~~~l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             cccHHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999876544