Psyllid ID: psy2968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Secondary Structure (PSIPRED)
cEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccEEEEccccccccccHHHHEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHcHHHccccccccHHcHHHccccccEEEcccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITslpllvavitpwivpeSARWLVSQGRVDEAVVIMKRFEkinnkkvdpKLYQQLKETCQRQAKqeidgkrysavinpklplIILGMIGILGGALClflpetlgqdlpqtlqdgenfgrnqkfldfpccgnagvRGAIMAYICS
Flexible Loop (DISEMBL)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRfekinnkkvdpkLYQQLKETCQRQakqeidgkrysaVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Low Complexity Region (SEG)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKlpliilgmigilggalclFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Disordered region (IsUnstruct)
**IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQR*AKQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYIC*
Disordered Region (DISOPRED)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLY*******************YSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Disordered Region (DISEMBL)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Disordered Region (DISPRO)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTLQDGENFGRNQKFLDFPCCGNAGVRGAIMAYICS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9VCA2	548	Organic cation transporte	no	N/A	0.549	0.173	0.357	2e-13
O76082	557	Solute carrier family 22	yes	N/A	0.520	0.161	0.357	7e-12
O75751	556	Solute carrier family 22	no	N/A	0.485	0.151	0.376	3e-11
Q9WTN6	564	Solute carrier family 22	yes	N/A	0.549	0.168	0.32	5e-11
Q95R48	567	Organic cation transporte	no	N/A	0.566	0.172	0.306	7e-11
Q9Y226	551	Solute carrier family 22	no	N/A	0.549	0.172	0.326	9e-11
Q9Z0E8	557	Solute carrier family 22	no	N/A	0.502	0.156	0.347	2e-10
Q9WTW5	551	Solute carrier family 22	no	N/A	0.485	0.152	0.364	3e-10
O88446	551	Solute carrier family 22	no	N/A	0.485	0.152	0.364	3e-10
Q3YAW7	542	Solute carrier family 22	no	N/A	0.421	0.134	0.383	3e-10

>sp|Q9VCA2|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 62/95 (65%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           +++ +FF++   L    AY++ +W++L +  +LP L+ +   WI+PESARWL+ +GR DE
Sbjct: 220 VAMQMFFSVGFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDE 279

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQE 95
           A VI+++  K N  +V  ++Y+QL +    + KQ+
Sbjct: 280 AFVIIEKAAKENKVEVPNEIYEQLVDEVAEKKKQD 314

Probably transports organic cations.
Drosophila melanogaster (taxid: 7227)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           + + IF+     +LP  AY++ +W+ L V  ++P ++ V   W +PES RWL+SQGR +E
Sbjct: 233 LGVCIFYAFGYMVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIPESPRWLISQGRFEE 292

Query: 61  AVVIMKRFEKINNKKV-----DPKLYQQLKETCQR 90
           A VI+++  K N   V     DP   Q L    Q+
Sbjct: 293 AEVIIRKAAKANGIVVPSTIFDPSELQDLSSKKQQ 327

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

>sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 3   IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
           I +FFTL   +LP IAY++ NWQ + +  +LP  + ++  W+VPES RWL+++ + D+A+
Sbjct: 246 IQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKAL 305

Query: 63  VIMKRFEKINNKKVDPKLYQQLKET 87
            I++R  K N K +    Y ++  T
Sbjct: 306 QILRRIAKCNGKYLSSN-YSEITVT 329

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Homo sapiens (taxid: 9606)

>sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           + + IFF     +LP  AY++  W+ L +  +LP ++     W +PES RWL+SQGR+ E
Sbjct: 233 LGVCIFFAFGFMVLPLFAYFIREWRRLLLAITLPGVLCGALWWFIPESPRWLISQGRIKE 292

Query: 61  AVVIMKRFEKIN-----NKKVDPKLYQQLKETCQRQAKQE 95
           A VI+++  KIN     +   DP    +L++   ++ +  
Sbjct: 293 AEVIIRKAAKINGIVAPSTIFDPSETNKLQDDSSKKPQSH 332

Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746.

Mus musculus (taxid: 10090)

>sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 3   IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
           + +FF++   L    AY+V +W++L +  +LP L+ +   WI+PESARWL+ +GR D A+
Sbjct: 222 VMMFFSVGFMLTAVFAYFVHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAI 281

Query: 63  VIMKRFEKINNKKVDPKLYQQL---KETCQRQAKQEIDGKR 100
             M++  + N  ++  +   +L    E  + +AKQ+++ + 
Sbjct: 282 ANMQKAARFNKVEISDEALSELLDEGENSEEKAKQKLEDQE 322

Probably transports organic cations.

Drosophila melanogaster (taxid: 7227)

>sp|Q9Y226|S22AD_HUMAN Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%)

Query: 7   FTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMK 66
           F+L   +L  +AY   NW+ L +  + P L+     W +PESARWL+++GR+DEA+ +++
Sbjct: 233 FSLGQMVLAGLAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLTRGRMDEAIQLIQ 292

Query: 67  RFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRY 101
           +   +N +K+ P+L  QL       +   +D  R+
Sbjct: 293 KAASVNRRKLSPELMNQLVPEKTGPSGNALDLFRH 327

Homo sapiens (taxid: 9606)

>sp|Q9Z0E8|S22A5_MOUSE Solute carrier family 22 member 5 OS=Mus musculus GN=Slc22a5 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           + + IF+     +LP  AY++ +W+ L +  ++P ++     W +PES RWL+SQGR+ E
Sbjct: 233 LGVCIFYAFGFMVLPLFAYFIRDWRMLLLALTVPGVLCGALWWFIPESPRWLISQGRIKE 292

Query: 61  AVVIMKRFEKIN-----NKKVDPKLYQQLKET 87
           A VI+++  KIN     +   DP   Q L  T
Sbjct: 293 AEVIIRKAAKINGIVAPSTIFDPSELQDLNST 324

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Mus musculus (taxid: 10090)

>sp|Q9WTW5|S22A3_MOUSE Solute carrier family 22 member 3 OS=Mus musculus GN=Slc22a3 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 3   IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
           I +FFTL   +LP IAY+  +WQ + +  SLP  + ++  W+VPES RWL+++ + ++A+
Sbjct: 241 IQMFFTLGIIILPGIAYFTPSWQGIQLAISLPSFLFLLYYWVVPESPRWLITRKQGEKAL 300

Query: 63  VIMKRFEKINNKKVDPKLYQQLKET 87
            I++R  K N K +    Y ++  T
Sbjct: 301 QILRRVAKCNGKHLSSN-YSEITVT 324

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Mus musculus (taxid: 10090)

>sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus norvegicus GN=Slc22a3 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 3   IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
           I +FFTL   +LP IAY+  +WQ + +  SLP  + ++  W+VPES RWL+++ + ++A+
Sbjct: 241 IQMFFTLGIIILPGIAYFTPSWQGIQLAISLPSFLFLLYYWVVPESPRWLITRKQGEKAL 300

Query: 63  VIMKRFEKINNKKVDPKLYQQLKET 87
            I++R  K N K +    Y ++  T
Sbjct: 301 QILRRVAKCNGKHLSSN-YSEITVT 324

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Rattus norvegicus (taxid: 10116)

>sp|Q3YAW7|S22A7_RABIT Solute carrier family 22 member 7 OS=Oryctolagus cuniculus GN=SLC22A7 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 47/73 (64%)

Query: 4   AIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVV 63
           + F+T    LL  + Y + +W++L +  +LPL   +++ W VPESARWL++QGRV+EA  
Sbjct: 235 STFWTGGVMLLALVGYLIRDWRWLLLAVTLPLAPGILSLWWVPESARWLLTQGRVEEAQR 294

Query: 64  IMKRFEKINNKKV 76
            + R  ++N + V
Sbjct: 295 YLLRCARLNGRPV 307

Mediates sodium-independent multispecific organic anion transport.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
157131691	392	mfs transporter [Aedes aegypti] gi|10887	0.635	0.280	0.563	8e-31
157134647	333	mfs transporter [Aedes aegypti] gi|10887	0.635	0.330	0.563	1e-30
345489096	666	PREDICTED: organic cation transporter pr	0.601	0.156	0.576	2e-30
307167925	1122	Ectonucleotide pyrophosphatase/phosphodi	0.687	0.106	0.508	4e-30
242010074	712	organic cation transporter, putative [Pe	0.601	0.146	0.576	4e-30
189235365	637	PREDICTED: similar to AGAP006609-PA [Tri	0.635	0.172	0.536	8e-30
170074870	401	conserved hypothetical protein [Culex qu	0.635	0.274	0.545	9e-30
170068175	507	mfs transporter [Culex quinquefasciatus]	0.635	0.216	0.545	1e-29
221330907	662	CG42269 [Drosophila melanogaster] gi|220	0.635	0.166	0.554	8e-29
383856871	631	PREDICTED: organic cation transporter pr	0.589	0.161	0.549	9e-29

>gi|157131691|ref|XP_001662291.1| mfs transporter [Aedes aegypti] gi|108871435|gb|EAT35660.1| AAEL012183-PA [Aedes aegypti]

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 82/110 (74%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIA+FFT A+  LPWIAYY+ANW+   ++TS PL +A++TPW+VPESARWLVSQG+VD+
Sbjct: 17  MSIALFFTAASCALPWIAYYLANWKIFAIVTSAPLALAILTPWLVPESARWLVSQGKVDK 76

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLP 110
           A+ I+K+FEKIN K VD K+YQ   E+C R  ++E     YS +   K P
Sbjct: 77  AINILKKFEKINRKTVDAKVYQDFSESCVRLQEEEAANNSYSVLDLFKTP 126

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134647|ref|XP_001656396.1| mfs transporter [Aedes aegypti] gi|108870416|gb|EAT34641.1| AAEL013146-PA, partial [Aedes aegypti]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 82/110 (74%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIA+FFT A+  LPWIAYY+ANW+   ++TS PL +A++TPW+VPESARWLVSQG+VD+
Sbjct: 13  MSIALFFTAASCALPWIAYYLANWKIFAIVTSAPLALAILTPWLVPESARWLVSQGKVDK 72

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLP 110
           A+ I+K+FEKIN K VD K+YQ   E+C R  ++E     YS +   K P
Sbjct: 73  AINILKKFEKINRKTVDAKVYQDFSESCVRLQEEEAANNSYSVLDLFKTP 122

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489096|ref|XP_001604048.2| PREDICTED: organic cation transporter protein-like [Nasonia vitripennis]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 82/104 (78%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIA+FFT AA +LPWIAYY+A+W+  CV TS+PL++AV TPW+VPESARWLVSQG++D+
Sbjct: 295 MSIAMFFTFAACILPWIAYYIADWRLTCVATSVPLVLAVATPWLVPESARWLVSQGQIDK 354

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAV 104
           A+ I+ +FE+IN  KV  ++Y+  K+TC R  K+E   K YS +
Sbjct: 355 AMTILSKFERINKTKVPDQVYKDFKDTCARIQKEEEADKSYSVI 398

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167925|gb|EFN61301.1| Ectonucleotide pyrophosphatase/phosphodiesterase family member 4 [Camponotus floridanus]

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/122 (50%), Positives = 89/122 (72%), Gaps = 3/122 (2%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIA+FFT AA +LPWIAY++A+W+  C+  S+PL++AV  PW+VPESARWLVSQG+V++
Sbjct: 752 MSIALFFTFAACVLPWIAYFLADWRMTCIAISVPLVLAVAAPWLVPESARWLVSQGQVEK 811

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAV---INPKLPLIILGMI 117
           A+ I+ +FE++N  KV   +YQQ +ETC R  K++   K YS V    +P+L  I + +I
Sbjct: 812 AIKILGKFERMNGTKVPDNVYQQFRETCARVCKEQEADKTYSVVDLFRSPRLRNITILLI 871

Query: 118 GI 119
            I
Sbjct: 872 LI 873

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010074|ref|XP_002425801.1| organic cation transporter, putative [Pediculus humanus corporis] gi|212509734|gb|EEB13063.1| organic cation transporter, putative [Pediculus humanus corporis]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 82/104 (78%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIAIFFT+A  +LPW+A YVA+W+   +ITSLPL+VA +TPW++PESARWLVSQG+VD+
Sbjct: 347 MSIAIFFTIATVILPWLALYVADWRIFSIITSLPLIVACLTPWLIPESARWLVSQGQVDK 406

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAV 104
           A+ I+K+ E++N   VD KLY++ K+ CQ+Q K E   K YS +
Sbjct: 407 AINILKKVERVNKTHVDEKLYEKFKDDCQKQKKLEEVDKNYSVL 450

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235365|ref|XP_967323.2| PREDICTED: similar to AGAP006609-PA [Tribolium castaneum] gi|270004239|gb|EFA00687.1| hypothetical protein TcasGA2_TC003564 [Tribolium castaneum]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 85/110 (77%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIAIFFT AAS+LPWIAYY+A+W+ LC +TS PL++A++TPW+VPESARWLVSQG+ D+
Sbjct: 275 MSIAIFFTFAASILPWIAYYLADWKMLCYVTSAPLVLAIVTPWLVPESARWLVSQGKFDK 334

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLP 110
           A+ I+++F++IN  KV+ + Y + K +C +  K+E   K Y+ +   K P
Sbjct: 335 AIGILRKFQRINKTKVEEETYNKFKASCLKTQKEEEMDKAYTVLDLFKTP 384

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170074870|ref|XP_001870630.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167871949|gb|EDS35332.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 81/110 (73%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIA+FFT A+  LPWIAYY+ANW+   ++TS PL +A+ TP +VPESARWLVSQG+VD+
Sbjct: 22  MSIALFFTTASCALPWIAYYLANWKLFAIVTSAPLALAIFTPLLVPESARWLVSQGKVDK 81

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLP 110
           A+ I+K+FEKIN K +DPK+YQ   ++C R  ++E     YS +   K P
Sbjct: 82  AIKILKKFEKINKKTIDPKVYQDFSDSCVRLQEEEAANNNYSVLDLFKTP 131

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170068175|ref|XP_001868764.1| mfs transporter [Culex quinquefasciatus] gi|167864273|gb|EDS27656.1| mfs transporter [Culex quinquefasciatus]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 81/110 (73%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIA+FFT A+  LPWIAYY+ANW+   ++TS PL +A+ TP +VPESARWLVSQG+VD+
Sbjct: 128 MSIALFFTTASCALPWIAYYLANWKLFAIVTSAPLALAIFTPLLVPESARWLVSQGKVDK 187

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLP 110
           A+ I+K+FEKIN K +DPK+YQ   ++C R  ++E     YS +   K P
Sbjct: 188 AIKILKKFEKINKKTIDPKVYQDFSDSCVRLQEEEAANNNYSVLDLFKTP 237

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330907|ref|NP_648019.2| CG42269 [Drosophila melanogaster] gi|220902482|gb|AAF50706.2| CG42269 [Drosophila melanogaster]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 84/110 (76%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIAIFFT AA LLPWIAY++A+W+ L ++TS PLL+A+ TP++VPESARWLVSQG+VD+
Sbjct: 295 MSIAIFFTGAACLLPWIAYFLADWKLLAIVTSAPLLLAIFTPFVVPESARWLVSQGKVDK 354

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAVINPKLP 110
           AV I+K+ EK N ++V P+ YQ   ++C+R  +QE    +YS +   K P
Sbjct: 355 AVGILKKLEKGNGRQVPPQTYQIFTDSCKRMQEQEAQNGKYSVLDLFKSP 404

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856871|ref|XP_003703930.1| PREDICTED: organic cation transporter protein-like [Megachile rotundata]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 80/102 (78%)

Query: 1   MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
           MSIAIFFT AA +LPWIAYY+A+W+  C+ TS+PL+++V  PW++PESARWLVSQG++D 
Sbjct: 263 MSIAIFFTFAACILPWIAYYLADWRMTCIATSVPLVLSVAAPWLIPESARWLVSQGQIDR 322

Query: 61  AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYS 102
           A+ I+ +FEK+N  KV   +Y++ ++TC+R  K+E   K YS
Sbjct: 323 AINILNKFEKMNGTKVPDNVYKRFRDTCERICKEEEADKTYS 364

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
FB|FBgn0259164	662	CG42269 [Drosophila melanogast	0.601	0.157	0.567	8.3e-38
FB|FBgn0035647	706	CG10486 [Drosophila melanogast	0.601	0.147	0.346	2.9e-26
FB|FBgn0035645	540	CG5592 [Drosophila melanogaste	0.601	0.192	0.336	2.7e-21
FB|FBgn0038720	585	CG6231 [Drosophila melanogaste	0.514	0.152	0.359	3.3e-21
FB|FBgn0038716	540	CG7342 [Drosophila melanogaste	0.502	0.161	0.413	2.7e-20
FB|FBgn0019952	548	Orct "Organic cation transport	0.606	0.191	0.330	1.9e-19
FB|FBgn0038715	541	CG7333 [Drosophila melanogaste	0.537	0.171	0.279	3.7e-19
FB|FBgn0038719	545	CG16727 [Drosophila melanogast	0.537	0.170	0.301	7.3e-19
UNIPROTKB|F1NXX3	420	SLC22A4 "Uncharacterized prote	0.554	0.228	0.375	5.7e-17
FB|FBgn0038718	538	CG17752 [Drosophila melanogast	0.468	0.150	0.308	6.1e-17

FB|FBgn0259164 CG42269 [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 8.3e-38, Sum P(2) = 8.3e-38
 Identities = 59/104 (56%), Positives = 82/104 (78%)

Query:     1 MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
             MSIAIFFT AA LLPWIAY++A+W+ L ++TS PLL+A+ TP++VPESARWLVSQG+VD+
Sbjct:   295 MSIAIFFTGAACLLPWIAYFLADWKLLAIVTSAPLLLAIFTPFVVPESARWLVSQGKVDK 354

Query:    61 AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAV 104
             AV I+K+ EK N ++V P+ YQ   ++C+R  +QE    +YS +
Sbjct:   355 AVGILKKLEKGNGRQVPPQTYQIFTDSCKRMQEQEAQNGKYSVL 398

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035647 CG10486 [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
 Identities = 36/104 (34%), Positives = 69/104 (66%)

Query:     1 MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
             +S+A+F++    ++PWIA    NW+     TSLP+++A+ +  ++PESARWLVS G +D+
Sbjct:   322 LSLALFYSPFTMVMPWIALSAGNWRRFSSFTSLPIVLAMFSFCLLPESARWLVSVGEIDK 381

Query:    61 AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAV 104
             A+ I+K   ++N K+V  ++    + +C +  K+E+DG+ ++ +
Sbjct:   382 ALEILKNVIEVNKKQVSKEILDLFEASCTQFYKEELDGRDFTVL 425

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035645 CG5592 [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
 Identities = 35/104 (33%), Positives = 68/104 (65%)

Query:     1 MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
             +++  FFTL A LLPW+AY ++NW++  ++ +LP++  ++T  + PES  WL+S G+VD 
Sbjct:   230 LALTFFFTLGACLLPWLAYVISNWRHYAMVVALPIVFMILTSLLAPESPSWLMSVGKVDR 289

Query:    61 AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSAV 104
              + +MK   K N K +  +++ +++E  + +   E  GK+Y+++
Sbjct:   290 CIEVMKEAAKANGKIISEEVWSEMRECYELKFANEQLGKQYTSL 333

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038720 CG6231 [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
 Identities = 32/89 (35%), Positives = 53/89 (59%)

Query:     1 MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
             M++ +F+ L     PW+A  V +WQ     TSLP+L+ V+  ++V ESA+WLV++  +D 
Sbjct:   211 MAVGLFYCLGLVFTPWLAVLVGHWQIYLACTSLPILLVVLYYFVVQESAQWLVTRNDIDG 270

Query:    61 AVVIMKRFEKINNKKVDPKLYQQLKETCQ 89
             A+V +KR  K N  +V    + + +  CQ
Sbjct:   271 AIVRLKRVAKFNGCRVSQADFDEFRRHCQ 299

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038716 CG7342 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
 Identities = 36/87 (41%), Positives = 51/87 (58%)

Query:     3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
             I  F+ L +   PWIA  + +W+   + TSLPLLV      IVPES +WL+S+ + D AV
Sbjct:   200 IGFFYCLGSMAAPWIAVLMRSWRGFLLTTSLPLLVVPFFYLIVPESIQWLISKQKYDSAV 259

Query:    63 VIMKRFEKINNKKVDPKLYQQLKETCQ 89
             V +KR  KIN + V+   Y +  E C+
Sbjct:   260 VCLKRVAKINGRHVEESAYAEFIEECK 286

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0019952 Orct "Organic cation transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 35/106 (33%), Positives = 68/106 (64%)

Query:     1 MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
             +++ +FF++   L    AY++ +W++L +  +LP L+ +   WI+PESARWL+ +GR DE
Sbjct:   220 VAMQMFFSVGFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDE 279

Query:    61 AVVIMKRFEKINNKKVDPKLYQQL-KETCQRQAKQEIDGKRYSAVI 105
             A VI+++  K N  +V  ++Y+QL  E  +++ + E+   + +A +
Sbjct:   280 AFVIIEKAAKENKVEVPNEIYEQLVDEVAEKKKQDEMAASQPAATV 325

GO:0015695 "organic cation transport" evidence=ISS

GO:0006915 "apoptotic process" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038715 CG7333 [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
 Identities = 26/93 (27%), Positives = 55/93 (59%)

Query:     3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
             +A+F+       PW A ++ NW+    + SLP L  +I P+++ ESA+WL+++ + D+AV
Sbjct:   214 LAVFYCFGLMTSPWAAIWIGNWRRYLWLASLPALGVLIYPFLICESAQWLLTKRKYDDAV 273

Query:    63 VIMKRFEKINNKKVDPKLYQQLKETCQRQAKQE 95
             + +K+  K N + V+  ++ +  +  + +  Q+
Sbjct:   274 ICLKKVAKFNRRHVEESVFDEFVKYYRERELQD 306

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0038719 CG16727 [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 7.3e-19, Sum P(2) = 7.3e-19
 Identities = 28/93 (30%), Positives = 55/93 (59%)

Query:     3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
             +A+F+       PWIA ++ NW+    + SLP L  +I P ++ ESA+WL+++ + DEAV
Sbjct:   213 LAVFYCFGLMTSPWIAMWIGNWRRYLWLASLPALGVLIYPLLICESAQWLLTKKKYDEAV 272

Query:    63 VIMKRFEKINNKKVDPKLYQQLKETCQRQAKQE 95
               +K+  K N ++V+  ++ +  +  + +  +E
Sbjct:   273 ACLKKVAKFNGRQVEDSVFDEFVKHYREKMNEE 305

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NXX3 SLC22A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
 Identities = 36/96 (37%), Positives = 59/96 (61%)

Query:     1 MSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDE 60
             + + +FF +   LLP  AY++ +W+ L +  +LP L+ V   WI+PES RWL+SQGR  E
Sbjct:   102 LGVCVFFAIGYMLLPLFAYFIRDWRMLLLALTLPGLLCVPLWWIIPESPRWLISQGRYKE 161

Query:    61 AVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEI 96
             A VI+++  KINN      L+   +++  +Q ++ I
Sbjct:   162 AEVIIRKAAKINNTPAPAMLFDAAEDSKPQQQQKAI 197

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0009437 "carnitine metabolic process" evidence=IEA

GO:0015226 "carnitine transmembrane transporter activity" evidence=IEA

GO:0015491 "cation:cation antiporter activity" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

FB|FBgn0038718 CG17752 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
 Identities = 25/81 (30%), Positives = 48/81 (59%)

Query:     3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAV 62
             + +F+++   + PWIA ++ NW+      SLP L  +I P  + ES  WL+++G+ D+AV
Sbjct:   204 LGVFYSIGLMISPWIAIWLGNWRSYLWAASLPALGMLIFPLFLHESVEWLLTKGKFDKAV 263

Query:    63 VIMKRFEKINNKKVDPKLYQQ 83
               +K   K N ++V+  ++ +
Sbjct:   264 NNLKSVAKFNGRQVEDSVFDE 284

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-20
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-04
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	0.001
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 35/75 (46%), Positives = 53/75 (70%)

Query: 2   SIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEA 61
            I +FF+L   LLP +AY++ +W++L +  SLP  +  +  W VPES RWL+SQGR++EA
Sbjct: 220 LIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEA 279

Query: 62  VVIMKRFEKINNKKV 76
           + I++R  KIN KK+
Sbjct: 280 LKILQRIAKINGKKL 294

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 101 YSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQT 139
           Y       LPL++ G + +L G L LFLPET G  LP+T
Sbjct: 467 YLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 18  AYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKIN 72
           AY   +W+   ++ + P + A+     +PES R+ +  G+ DEA +I+K     N
Sbjct: 327 AYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 24  WQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQ 83
           W+Y+    ++P L+ ++  + VPE+ R+L+S+G+ ++A  I+    KI    +  +  Q+
Sbjct: 193 WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL---RKIMGNTLATQALQE 249

Query: 84  LKETCQRQAK 93
           +K +     K
Sbjct: 250 IKHSLDHGRK 259

Length = 479

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 2   SIAIFFTLAASLLPWIAYYVANWQ---YLCVITSLPLLVAVITPWIVPESARWLVSQGRV 58
           +  I                  W+    L +I +  L + +     +PES RWLV +GRV
Sbjct: 173 TFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF---LPESPRWLVGKGRV 229

Query: 59  DEA 61
           +EA
Sbjct: 230 EEA 232

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG0569|consensus	485		99.79
KOG0253|consensus	528		99.68
KOG0254|consensus	513		99.61
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.51
KOG0255|consensus	521		99.45
TIGR00898	505	2A0119 cation transport protein.	99.44
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.35
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.33
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.11
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.75
PRK10642	490	proline/glycine betaine transporter; Provisional	98.45
PRK10642	490	proline/glycine betaine transporter; Provisional	98.3
PRK09952	438	shikimate transporter; Provisional	98.24
TIGR00891	405	2A0112 putative sialic acid transporter.	98.19
KOG0252|consensus	538		97.99
TIGR00895	398	2A0115 benzoate transport.	97.97
KOG2533|consensus	495		97.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.88
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.57
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.53
PRK15075	434	citrate-proton symporter; Provisional	97.31
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.23
PRK03893	496	putative sialic acid transporter; Provisional	97.21
PRK12307	426	putative sialic acid transporter; Provisional	97.08
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.08
TIGR00893	399	2A0114 d-galactonate transporter.	96.7
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.38
PRK11010	491	ampG muropeptide transporter; Validated	96.21
TIGR00901	356	2A0125 AmpG-related permease.	96.16
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.99
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	95.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	95.89
PRK11902	402	ampG muropeptide transporter; Reviewed	95.78
PRK03545	390	putative arabinose transporter; Provisional	95.7
PRK11663	434	regulatory protein UhpC; Provisional	95.6
PRK10091	382	MFS transport protein AraJ; Provisional	95.33
PLN00028	476	nitrate transmembrane transporter; Provisional	95.22
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	95.16
TIGR00900	365	2A0121 H+ Antiporter protein.	95.03
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	94.94
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	94.86
PRK12382	392	putative transporter; Provisional	94.61
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	94.57
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	94.35
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	94.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	94.31
PRK05122	399	major facilitator superfamily transporter; Provisi	94.21
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	94.21
PRK10473	392	multidrug efflux system protein MdtL; Provisional	94.14
PTZ00207	591	hypothetical protein; Provisional	93.63
TIGR00805	633	oat sodium-independent organic anion transporter.	93.59
PRK11043	401	putative transporter; Provisional	93.55
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	93.45
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	93.4
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	93.4
PRK10489	417	enterobactin exporter EntS; Provisional	93.18
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	93.14
PRK10213	394	nepI ribonucleoside transporter; Reviewed	93.14
KOG2532|consensus	466		93.01
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	92.26
PRK09874	408	drug efflux system protein MdtG; Provisional	92.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	91.54
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	91.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	89.86
PRK09528	420	lacY galactoside permease; Reviewed	89.8
PRK10133	438	L-fucose transporter; Provisional	89.75
PRK03699	394	putative transporter; Provisional	88.18
PRK14995	495	methyl viologen resistance protein SmvA; Provision	87.76
PRK15011	393	sugar efflux transporter B; Provisional	86.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	86.24
PRK09705	393	cynX putative cyanate transporter; Provisional	86.04
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	85.4
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	85.22
PRK11195	393	lysophospholipid transporter LplT; Provisional	85.13
KOG1330|consensus	493		84.47
KOG3626|consensus	735		82.38
PRK11652	394	emrD multidrug resistance protein D; Provisional	82.06
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	82.05
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	81.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	81.12
TIGR00897	402	2A0118 polyol permease family. This family of prot	80.01

>KOG0569|consensus

Probab=99.79  E-value=1.3e-18  Score=140.14  Aligned_cols=144  Identities=17%  Similarity=0.242  Sum_probs=99.3

Q ss_pred             hhhHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHhhcccCChHHHHH-cCChHHHHHHHHHHHHHcCCCC
Q psy2968           3 IAIFFTLAASLLPWIAYYV-----ANWQYLCVITSLPLLVAVITPWIVPESARWLVS-QGRVDEAVVIMKRFEKINNKKV   76 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~-----~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~-kg~~~ea~~~l~~i~~~~~~~~   76 (173)
                      .+++.++|.+++..++...     ..|++++.+..+|+++.++...++|||||||+. ||+.+||+++++++++.++++.
T Consensus       157 ~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~  236 (485)
T KOG0569|consen  157 LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA  236 (485)
T ss_pred             HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh
Confidence            4566667777666555433     269999999999999999999999999999987 8999999999999996443222


Q ss_pred             ChHH-HHHHHHHHHHHhhhh-----hhccccc----------------------------------cccccchhHHHHHH
Q psy2968          77 DPKL-YQQLKETCQRQAKQE-----IDGKRYS----------------------------------AVINPKLPLIILGM  116 (173)
Q Consensus        77 ~~~~-~~~~~~~~~~~~~~~-----~~~~~~~----------------------------------~~~~~~~~~i~~~~  116 (173)
                      +.+. .++.++.+....+..     ...+..+                                  ....+.+.+...++
T Consensus       237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~  316 (485)
T KOG0569|consen  237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI  316 (485)
T ss_pred             HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            2111 111111111100000     0011111                                  23345677888999


Q ss_pred             HHHHHHHHHHhcccccCCCCCcchHHhhhh
Q psy2968         117 IGILGGALCLFLPETLGQDLPQTLQDGENF  146 (173)
Q Consensus       117 ~~~~~~~~~~~l~d~~grr~~~~i~~~~~~  146 (173)
                      ++++.++++.+++||.|||++...+-..+.
T Consensus       317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMA  346 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            999999999999999999999988765444

>KOG0253|consensus

Probab=99.68  E-value=1.3e-16  Score=123.29  Aligned_cols=76  Identities=24%  Similarity=0.451  Sum_probs=69.1

Q ss_pred             chhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCC
Q psy2968           2 SIAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVD   77 (173)
Q Consensus         2 ~~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~   77 (173)
                      ++..+|.+|.++..+++++..   ||||......+|..+.....+++||||||++.+|+.+||.+.+++++++|+++.+
T Consensus       204 V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlp  282 (528)
T KOG0253|consen  204 VMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLP  282 (528)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCC
Confidence            345789999999999999874   9999999999999999999999999999999999999999999999999987644

>KOG0254|consensus

Probab=99.61  E-value=6.2e-15  Score=121.07  Aligned_cols=144  Identities=22%  Similarity=0.344  Sum_probs=104.6

Q ss_pred             chhhHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCC
Q psy2968           2 SIAIFFTLAASLLPWIAYYVA----NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVD   77 (173)
Q Consensus         2 ~~~~~~~~G~~~~~~l~~~~~----~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~   77 (173)
                      ..++++.+|.++++++++...    +||+++++..+|+++..+..+++||||+||+++|+.+||+++++++++.+..+ .
T Consensus       182 ~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~-~  260 (513)
T KOG0254|consen  182 LYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED-V  260 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc-h
Confidence            457888899999999999885    69999999999999988888899999999999999999999999999643222 2


Q ss_pred             hHHHHHHHHHHHHHh---hh-----hhhcc-ccc-------------------------------ccccc-chhHHHHHH
Q psy2968          78 PKLYQQLKETCQRQA---KQ-----EIDGK-RYS-------------------------------AVINP-KLPLIILGM  116 (173)
Q Consensus        78 ~~~~~~~~~~~~~~~---~~-----~~~~~-~~~-------------------------------~~~~~-~~~~i~~~~  116 (173)
                      ..+..+++.......   +.     +...+ ..+                               +..+. ....+..++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~  340 (513)
T KOG0254|consen  261 EVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGV  340 (513)
T ss_pred             HHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHH
Confidence            222222221100000   00     00001 000                               22223 778889999


Q ss_pred             HHHHHHHHHHhcccccCCCCCcchHHhhhh
Q psy2968         117 IGILGGALCLFLPETLGQDLPQTLQDGENF  146 (173)
Q Consensus       117 ~~~~~~~~~~~l~d~~grr~~~~i~~~~~~  146 (173)
                      +++++++++.+++||+|||++...+.....
T Consensus       341 v~~~~t~~~~~lvd~~gRr~lll~s~~~m~  370 (513)
T KOG0254|consen  341 VNFLGTLVATYLVDRFGRRKLLLFGAAGMS  370 (513)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence            999999999999999999999988765443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.51  E-value=6.6e-17  Score=130.13  Aligned_cols=147  Identities=24%  Similarity=0.455  Sum_probs=97.9

Q ss_pred             chhhHHHHHHHHHHHHHHhcc---h---hHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCC
Q psy2968           2 SIAIFFTLAASLLPWIAYYVA---N---WQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKK   75 (173)
Q Consensus         2 ~~~~~~~~G~~~~~~l~~~~~---~---WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~   75 (173)
                      ..++++.+|.+++.++++...   +   ||+.+.++.+|+++.++..+++|||||||++|||.+||++.++++++.+..+
T Consensus       142 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~  221 (451)
T PF00083_consen  142 LFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED  221 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccc
Confidence            356677888888887776552   4   9999999999999888888999999999999999999999999976543221


Q ss_pred             CChHHHHHHHHHHHHHhh-----hhhhcccc--c------------------------------cccccchhHHHHHHHH
Q psy2968          76 VDPKLYQQLKETCQRQAK-----QEIDGKRY--S------------------------------AVINPKLPLIILGMIG  118 (173)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~------------------------------~~~~~~~~~i~~~~~~  118 (173)
                        ++..++..+.++....     +....+.+  .                              +..+....+++.++..
T Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  299 (451)
T PF00083_consen  222 --EEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVN  299 (451)
T ss_pred             --ccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              1111111111111000     00011010  0                              1122235566777888


Q ss_pred             HHHHHHHHhcccccCCCCCcchHHhhhhcCCC
Q psy2968         119 ILGGALCLFLPETLGQDLPQTLQDGENFGRNQ  150 (173)
Q Consensus       119 ~~~~~~~~~l~d~~grr~~~~i~~~~~~~~~~  150 (173)
                      +++.+++.++.||+|||.+...+.........
T Consensus       300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~  331 (451)
T PF00083_consen  300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSL  331 (451)
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            89999999999999999888777554443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255|consensus

Probab=99.45  E-value=1.3e-12  Score=107.32  Aligned_cols=141  Identities=27%  Similarity=0.345  Sum_probs=99.4

Q ss_pred             hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCChHHHH
Q psy2968           3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ   82 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~~~~~~   82 (173)
                      ..+++..|.+...+.++.+.+||+.+++..+|+++.++..+..||||||++.+||.+||.+.++++.+.|+.........
T Consensus       212 ~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~  291 (521)
T KOG0255|consen  212 GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELL  291 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHH
Confidence            35678899999999999999999999999999998887777777999999999999999999999998875443322111


Q ss_pred             HHHHHHHHHhhhh--h--------hcc--ccc------------------------cccccchhHHHHHHHHHHHHHHHH
Q psy2968          83 QLKETCQRQAKQE--I--------DGK--RYS------------------------AVINPKLPLIILGMIGILGGALCL  126 (173)
Q Consensus        83 ~~~~~~~~~~~~~--~--------~~~--~~~------------------------~~~~~~~~~i~~~~~~~~~~~~~~  126 (173)
                      ......+......  .        ..+  .+.                        -..+.+....+.+.+...+.....
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~  371 (521)
T KOG0255|consen  292 RLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNG  371 (521)
T ss_pred             HHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHH
Confidence            1110100000000  0        000  000                        123455666667778888888888


Q ss_pred             hcccccCCCCCcchHHh
Q psy2968         127 FLPETLGQDLPQTLQDG  143 (173)
Q Consensus       127 ~l~d~~grr~~~~i~~~  143 (173)
                      .+.|+.|||.....+..
T Consensus       372 ~~~~~~gR~~~~~~~~~  388 (521)
T KOG0255|consen  372 LLLPEFGRRPPLFLSLF  388 (521)
T ss_pred             HHHHHhCcHHHHHHHHH
Confidence            99999999988777654

>TIGR00898 2A0119 cation transport protein

Probab=99.44  E-value=1.8e-12  Score=105.90  Aligned_cols=140  Identities=33%  Similarity=0.594  Sum_probs=98.3

Q ss_pred             hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCChHHHH
Q psy2968           3 IAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ   82 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~~~~~~   82 (173)
                      .++++.+|.+++.++++.+.+||+.+++.+++.++..+..+++||||+|+..+++.+++.+.+++..+.|+.....+...
T Consensus       221 ~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  300 (505)
T TIGR00898       221 IQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLS  300 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence            45678889999999998888999999999999888777778899999999999999999999999998876544333211


Q ss_pred             HHHHHHHHHhh-----hhhh-ccccc--------------------------cccccchhHHHHHHHHHHHHHHHHhccc
Q psy2968          83 QLKETCQRQAK-----QEID-GKRYS--------------------------AVINPKLPLIILGMIGILGGALCLFLPE  130 (173)
Q Consensus        83 ~~~~~~~~~~~-----~~~~-~~~~~--------------------------~~~~~~~~~i~~~~~~~~~~~~~~~l~d  130 (173)
                      ...+.......     .... .+...                          -..+.+...++.++..+++.+++.++.|
T Consensus       301 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~d  380 (505)
T TIGR00898       301 LSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLID  380 (505)
T ss_pred             hhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11000000000     0000 00000                          1223445556678888899999999999


Q ss_pred             ccCCCCCcchHH
Q psy2968         131 TLGQDLPQTLQD  142 (173)
Q Consensus       131 ~~grr~~~~i~~  142 (173)
                      |+|||....+..
T Consensus       381 r~grr~~~~~~~  392 (505)
T TIGR00898       381 RLGRRYTMAASL  392 (505)
T ss_pred             HhCCHHHHHHHH
Confidence            999998776654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.35  E-value=7.2e-12  Score=102.65  Aligned_cols=48  Identities=21%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChH-HHHHHHHHHHH
Q psy2968          23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVD-EAVVIMKRFEK   70 (173)
Q Consensus        23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~-ea~~~l~~i~~   70 (173)
                      +||+++.++++|+++.++.++++|||||||+.|||.+ ++.+.+++..+
T Consensus       202 ~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       202 MWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            6999999999999998888899999999999998874 57777777754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.33  E-value=1.1e-11  Score=105.53  Aligned_cols=72  Identities=22%  Similarity=0.520  Sum_probs=60.1

Q ss_pred             hhhHHHHHHHHHHHHHHhc----------------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHH
Q psy2968           3 IAIFFTLAASLLPWIAYYV----------------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMK   66 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~----------------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~   66 (173)
                      ++.++.+|.+++..+++.+                .+||++++++++|.++.++..+++||||+||+.+||.+||.+.++
T Consensus       296 ~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~  375 (742)
T TIGR01299       296 LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILK  375 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHH
Confidence            4566777877777654332                269999999999999888888899999999999999999999999


Q ss_pred             HHHHHcCC
Q psy2968          67 RFEKINNK   74 (173)
Q Consensus        67 ~i~~~~~~   74 (173)
                      ++++.|++
T Consensus       376 ~i~~~n~~  383 (742)
T TIGR01299       376 LIHDTNMR  383 (742)
T ss_pred             HHhcCCCC
Confidence            99987754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.11  E-value=1.3e-09  Score=88.48  Aligned_cols=138  Identities=18%  Similarity=0.350  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHH
Q psy2968           3 IAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKI   71 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~-----------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~   71 (173)
                      .+.++.+|.+++++++..+           .+||+.+++.+++.++..+..+++||||+|+..+++.+++.+.++++.+.
T Consensus       161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~  240 (479)
T PRK10077        161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN  240 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence            3556677777776665432           27999999999888887777788999999999999988888777776532


Q ss_pred             cCCCCChHHHHHHHHHHHHHhhhhhhccccc-----------------------------------cccccchhHHHHHH
Q psy2968          72 NNKKVDPKLYQQLKETCQRQAKQEIDGKRYS-----------------------------------AVINPKLPLIILGM  116 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~i~~~~  116 (173)
                      +.   ..+..++..+............-...                                   +........+..++
T Consensus       241 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  317 (479)
T PRK10077        241 TL---ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGV  317 (479)
T ss_pred             hh---HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence            11   11111111111100000000000000                                   01112234445677


Q ss_pred             HHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968         117 IGILGGALCLFLPETLGQDLPQTLQDG  143 (173)
Q Consensus       117 ~~~~~~~~~~~l~d~~grr~~~~i~~~  143 (173)
                      .++++.++++++.||+|||.+......
T Consensus       318 ~~~i~~~~~g~l~dr~g~r~~~i~~~~  344 (479)
T PRK10077        318 INLTFTVLAIMTVDKFGRKPLQIIGAL  344 (479)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHhHH
Confidence            888999999999999999987665443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.75  E-value=1.5e-07  Score=75.52  Aligned_cols=67  Identities=24%  Similarity=0.423  Sum_probs=52.8

Q ss_pred             hhhHHHHHHHHHHHHH---Hhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968           3 IAIFFTLAASLLPWIA---YYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFE   69 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~---~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~   69 (173)
                      .+.++.+|.+++..++   ...   .+||+.+++..++.++.++..+++||+|+|+..+++.+++.+.+++..
T Consensus       168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (481)
T TIGR00879       168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR  240 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHh
Confidence            3566788888888887   332   389999999888877777778889999999988888877777666654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.45  E-value=8.6e-07  Score=72.66  Aligned_cols=35  Identities=9%  Similarity=0.167  Sum_probs=28.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCC
Q psy2968          23 NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR   57 (173)
Q Consensus        23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~   57 (173)
                      +||++|+++.++.++.++++.++||||+|+..+++
T Consensus       190 gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~  224 (490)
T PRK10642        190 GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK  224 (490)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh
Confidence            89999999887777777777789999999865443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.30  E-value=8.2e-07  Score=72.76  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHc-----CChHHHHHHHHHHH
Q psy2968           8 TLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQ-----GRVDEAVVIMKRFE   69 (173)
Q Consensus         8 ~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~k-----g~~~ea~~~l~~i~   69 (173)
                      ..|.+...++++..   .+|+..+.+..+++++.++..+++||||+|++.+     ||.+||++++++++
T Consensus       389 ~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        389 LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            33443334444433   2588887777778777777777889999999865     99999999999997

>PRK09952 shikimate transporter; Provisional

Probab=98.24  E-value=4.1e-06  Score=67.76  Aligned_cols=55  Identities=15%  Similarity=0.158  Sum_probs=38.8

Q ss_pred             hhhHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCC
Q psy2968           3 IAIFFTLAASLLPWIAYY-----------VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR   57 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~-----------~~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~   57 (173)
                      .+.++.+|.+++..+...           ..+||+++.+++++.++.+..+..+||||+|...+++
T Consensus       166 ~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~  231 (438)
T PRK09952        166 VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE  231 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh
Confidence            345566666666544322           1389999999999887777777789999999865543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.19  E-value=1.3e-05  Score=63.24  Aligned_cols=54  Identities=20%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHHHHHHhcc-----hhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCC
Q psy2968           4 AIFFTLAASLLPWIAYYVA-----NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGR   57 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~~-----~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~   57 (173)
                      +.++.+|.+++..++..+.     +||+.+.+..++.++.++....+||+|++...+++
T Consensus       142 ~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (405)
T TIGR00891       142 ISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG  200 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh
Confidence            4455666666666544331     49999999888877777777789999988754433

>KOG0252|consensus

Probab=97.99  E-value=2.8e-06  Score=68.27  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCChHHHH
Q psy2968          23 NWQYLCVITSLPLLVAVITPWIVPESARWLV   53 (173)
Q Consensus        23 ~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~   53 (173)
                      -||..++++.+|+++.++.++.||||+||-.
T Consensus       223 vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~a  253 (538)
T KOG0252|consen  223 VWRIIFGLGAVPALLVLYFRLKMPETARYTA  253 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCcchhHHH
Confidence            4999999999999999999999999999973

>TIGR00895 2A0115 benzoate transport

Probab=97.97  E-value=3.6e-05  Score=60.39  Aligned_cols=65  Identities=23%  Similarity=0.426  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHH-HHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHH
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSL-PLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFE   69 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~-~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~   69 (173)
                      +....+|..+++.++-.+   .+||+.+.+.++ ..+..++..+++||+|++...+ +.+++.+..++..
T Consensus       147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  215 (398)
T TIGR00895       147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA  215 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHH
Confidence            445566666666654332   289999998854 4444555667799999988765 4455555555443

>KOG2533|consensus

Probab=97.89  E-value=5e-06  Score=68.27  Aligned_cols=133  Identities=19%  Similarity=0.357  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHH-HHHhhcccCChH--HHHHcCChHHHHHHHHHHHHHc
Q psy2968           5 IFFTLAASLLPWIAYYV---------ANWQYLCVITSLPLLVA-VITPWIVPESAR--WLVSQGRVDEAVVIMKRFEKIN   72 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~---------~~WR~~~~i~~~~~~~~-~~~~~~lPESP~--wl~~kg~~~ea~~~l~~i~~~~   72 (173)
                      .+..+|.++++++++.+         .+|||+|++.++.+++. ++..+++|+.|.  |+..+.+.+   -..+++++.+
T Consensus       177 a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~---~~~~~~~~~~  253 (495)
T KOG2533|consen  177 ASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKE---LVVERLRESP  253 (495)
T ss_pred             HhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHH---HHHHHHHhcc
Confidence            34458888888888883         38999999998887765 455677999997  554332211   2234444333


Q ss_pred             CCCCChH-HHHHHHHHHHHHhh-------hhhhccccc---------------cccccchhHHHHHHHHHHHHHHHHhcc
Q psy2968          73 NKKVDPK-LYQQLKETCQRQAK-------QEIDGKRYS---------------AVINPKLPLIILGMIGILGGALCLFLP  129 (173)
Q Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~~l~  129 (173)
                      ....+++ ...++.+.......       .......+.               +.......++...++++++.++++++.
T Consensus       254 ~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~ls  333 (495)
T KOG2533|consen  254 SGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLS  333 (495)
T ss_pred             CCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHH
Confidence            3222221 11122211111000       000000110               233455666778899999999999999


Q ss_pred             cc----cCCCCCcch
Q psy2968         130 ET----LGQDLPQTL  140 (173)
Q Consensus       130 d~----~grr~~~~i  140 (173)
                      ||    ..+|.+...
T Consensus       334 dr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  334 DRLKTIFARRLLFIV  348 (495)
T ss_pred             HHHhhhHHHHHHHHH
Confidence            99    556654443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.88  E-value=0.0001  Score=59.48  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=27.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhcccCChHHHH
Q psy2968          22 ANWQYLCVITSLPLLVAVITPWIVPESARWLV   53 (173)
Q Consensus        22 ~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~   53 (173)
                      .+||++|.+++++.++.++.+..+||||++..
T Consensus       195 ~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~  226 (432)
T PRK10406        195 WGWRIPFALGAVLAVVALWLRRQLDETSQQET  226 (432)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence            38999999999998887777888999998753

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.62  E-value=0.00028  Score=55.22  Aligned_cols=136  Identities=10%  Similarity=0.035  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHHc
Q psy2968           4 AIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKIN   72 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~-----------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~   72 (173)
                      +.+..+|.+++.+++...           .+||+.+.+..+..++..+....+||+|++...+++.++..+.+..+.+.+
T Consensus       138 ~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (394)
T TIGR00883       138 QVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKH  217 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhc
Confidence            344556666655543321           279999999888777766666778999987654433222222222222111


Q ss_pred             CCCCChHHHHHHH-HHHH---HHhhhhhhccccc-cccccchhHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968          73 NKKVDPKLYQQLK-ETCQ---RQAKQEIDGKRYS-AVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQT  139 (173)
Q Consensus        73 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~  139 (173)
                      ....-.-..-... ....   ......-...... +...........++...++.++.+++.||+|||....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI  289 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            0000000000000 0000   0000000000000 1112223344566778888889999999999987554

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.57  E-value=0.0006  Score=54.21  Aligned_cols=136  Identities=15%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH-HHHhhcccCChHHHHHcCChHHHHHHHHHHHHHcCCCCChH
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPK   79 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~-~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~~~~~~~~~   79 (173)
                      +.+..+|.+++..++...   .+||+.+++.++..++. .+...++||+|++...+++.++.....+.+.+.........
T Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (406)
T PRK11551        145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL  224 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHH
Confidence            445566777666665433   27999999877655544 44556789999887554332222222222211000000000


Q ss_pred             HHHHH-HHH-HHHHh----hhhhhccccccccccchhHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968          80 LYQQL-KET-CQRQA----KQEIDGKRYSAVINPKLPLIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus        80 ~~~~~-~~~-~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      ..... ... .....    ......... +...........++..+++.++.+++.||+|||....+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  290 (406)
T PRK11551        225 LWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLL  290 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            00000 000 00000    000000000 12223344556677888999999999999999866544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.53  E-value=0.00052  Score=55.11  Aligned_cols=48  Identities=19%  Similarity=0.401  Sum_probs=33.1

Q ss_pred             hhhHHHHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy2968           3 IAIFFTLAASLLPWIAYYV---------ANWQYLCVITSLPLLVAV-ITPWIVPESAR   50 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~---------~~WR~~~~i~~~~~~~~~-~~~~~lPESP~   50 (173)
                      ++.++.+|.+++..++..+         .+||+.+.+.+++.++.. +..+++||+|+
T Consensus       137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       137 FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3455666676666664332         389999999888876644 44567899994

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.31  E-value=0.002  Score=52.02  Aligned_cols=33  Identities=12%  Similarity=0.087  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      ......++.++++.++.+++.||+|||......
T Consensus       278 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~  310 (434)
T PRK15075        278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAF  310 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            344456677888899999999999999776553

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.23  E-value=0.0053  Score=48.75  Aligned_cols=50  Identities=8%  Similarity=0.004  Sum_probs=36.0

Q ss_pred             hhhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHH-HHHHhhcccCChHHH
Q psy2968           3 IAIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESARWL   52 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~-~~~~~~~lPESP~wl   52 (173)
                      .+.+.++|.+++.+++..+   .+||+.+.+.++++++ .++.++++||+|++.
T Consensus       119 ~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~  172 (368)
T TIGR00903       119 LSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA  172 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            3456677777777776655   3999999997666554 455566799999874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.21  E-value=0.003  Score=51.64  Aligned_cols=51  Identities=24%  Similarity=0.380  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHc
Q psy2968           5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQ   55 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~k   55 (173)
                      ..+.+|.+++..++..+   .+||+.+.+..++.++.++....+||+++|...+
T Consensus       151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~  204 (496)
T PRK03893        151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKH  204 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhc
Confidence            34556666665554333   2899999988777776666677799999886543

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.08  E-value=0.0024  Score=51.14  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHHHHH
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARWLVS   54 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~   54 (173)
                      +.++.+|.+++..+...+   .+||+.+++..++.++.+......||+++|...
T Consensus       148 ~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~  201 (426)
T PRK12307        148 VSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEA  201 (426)
T ss_pred             HHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHh
Confidence            445666776666554332   289999999777766655555668999988643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.00041  Score=55.53  Aligned_cols=48  Identities=10%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             hhhHHHHHHHHHHHHH---Hhcc--hhHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy2968           3 IAIFFTLAASLLPWIA---YYVA--NWQYLCVITSLPLLVA-VITPWIVPESAR   50 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~---~~~~--~WR~~~~i~~~~~~~~-~~~~~~lPESP~   50 (173)
                      .+++.++|..+...+.   ++..  +||..|+++++.+++. ++..+.+.++|+
T Consensus       158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4556677776666555   2222  8999999999887765 555666888884

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.70  E-value=0.0027  Score=49.49  Aligned_cols=47  Identities=11%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHH-hhcccCChH
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT-PWIVPESAR   50 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~-~~~lPESP~   50 (173)
                      +....+|.++++.++..+   .+||+.+.+.++..++..+. .+++||+|+
T Consensus       124 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       124 NSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            344556666666655432   38999999988776665444 445777663

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.38  E-value=0.019  Score=44.88  Aligned_cols=47  Identities=15%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHH-hhcccCChHHH
Q psy2968           6 FFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT-PWIVPESARWL   52 (173)
Q Consensus         6 ~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~-~~~lPESP~wl   52 (173)
                      ..++|.+++..++..+   .+||+.+++.+++.++..+. .+++||+|++.
T Consensus       133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  183 (375)
T TIGR00899       133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA  183 (375)
T ss_pred             HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc
Confidence            3455666665554433   28999999988876665444 45589998653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.21  E-value=0.043  Score=45.27  Aligned_cols=48  Identities=19%  Similarity=0.327  Sum_probs=33.7

Q ss_pred             hhHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy2968           4 AIFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESARW   51 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~~~~~lPESP~w   51 (173)
                      +.++.+|.+++..++..+    .+||..+++.++..++..+..+++||+|+.
T Consensus       149 ~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~  200 (491)
T PRK11010        149 VLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDT  200 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            455666776666554432    279999999888777766666678998753

>TIGR00901 2A0125 AmpG-related permease

Probab=96.16  E-value=0.042  Score=42.89  Aligned_cols=47  Identities=17%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             hhHHHHHHHHHHHHHHhc---ch--------hHHHHHHHHHHHHHHHHHhh-cccCChH
Q psy2968           4 AIFFTLAASLLPWIAYYV---AN--------WQYLCVITSLPLLVAVITPW-IVPESAR   50 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~--------WR~~~~i~~~~~~~~~~~~~-~lPESP~   50 (173)
                      +.++.+|.++++.++..+   .+        ||..+.+.++..++..+..+ ..||+++
T Consensus       125 ~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~  183 (356)
T TIGR00901       125 IVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE  183 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            456677777777665433   14        99999999888777665555 4688643

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.99  E-value=0.026  Score=45.24  Aligned_cols=41  Identities=15%  Similarity=0.287  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hhccc
Q psy2968           5 IFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVIT-PWIVP   46 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~-~~~lP   46 (173)
                      +...+|..++..++-.+ |||..|+.-+..+++.++. ...+|
T Consensus       148 lA~v~GvPLGt~ig~~~-GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         148 LATVLGVPLGTFLGQLF-GWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHhccHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33445666666666666 9999999988887775544 55688

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=95.92  E-value=0.036  Score=43.00  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      .....++..+++.++.+++.||+|||....+.
T Consensus       245 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  276 (377)
T TIGR00890       245 AVSISSIFNGGGRPFLGALSDKIGRQKTMSIV  276 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            34456777888999999999999999776554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=95.89  E-value=0.016  Score=47.05  Aligned_cols=46  Identities=9%  Similarity=0.091  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHH-hhcccCChH
Q psy2968           5 IFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVIT-PWIVPESAR   50 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~~-~~~lPESP~   50 (173)
                      .+..+|.+++..++..+    .+||+.+++.+++.++..+. .++.||+|+
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            33455555555553322    38999999998887765544 445778885

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=95.78  E-value=0.099  Score=41.70  Aligned_cols=47  Identities=17%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy2968           5 IFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAVITPWIVPESARW   51 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~~~~~~lPESP~w   51 (173)
                      .++.+|.+++..++..+    .+||..+++.++..++..+..+++||+++.
T Consensus       137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~  187 (402)
T PRK11902        137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP  187 (402)
T ss_pred             HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            44566666666554332    289999999887766665566678988754

>PRK03545 putative arabinose transporter; Provisional

Probab=95.70  E-value=0.13  Score=40.77  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCC
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLP  137 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~  137 (173)
                      .....++.++++.++.+++.||+|||..
T Consensus       246 ~~~~~~~~~~~g~~~~g~l~dr~~~~~~  273 (390)
T PRK03545        246 LLLLFGGAGIIGSVLFSRLGNRHPSGFL  273 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence            3445677889999999999999998854

>PRK11663 regulatory protein UhpC; Provisional

Probab=95.60  E-value=0.052  Score=43.84  Aligned_cols=49  Identities=14%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH-HHHhhcccCChHHH
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESARWL   52 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~-~~~~~~lPESP~wl   52 (173)
                      +....+|.+++..++-.+   .+||+.+.+.+++.++. ++..+++||+|++.
T Consensus       153 ~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~  205 (434)
T PRK11663        153 NTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM  205 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc
Confidence            344556666665543322   38999999988776544 44455689999764

>PRK10091 MFS transport protein AraJ; Provisional

Probab=95.33  E-value=0.091  Score=41.61  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      ......++..+++.++.+++.||+|+|....+.
T Consensus       239 ~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~  271 (382)
T PRK10091        239 FIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVT  271 (382)
T ss_pred             HHHHHHHHHHHHHhHHHheeccccCchhHHHHH
Confidence            344567778899999999999999988766543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.22  E-value=0.082  Score=43.38  Aligned_cols=28  Identities=7%  Similarity=0.184  Sum_probs=22.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhcccccCCC
Q psy2968         108 KLPLIILGMIGILGGALCLFLPETLGQD  135 (173)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~l~d~~grr  135 (173)
                      .....+.++.+.++.++++++.||++||
T Consensus       291 ~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        291 GAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            3445567788899999999999999876

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=95.16  E-value=0.13  Score=40.28  Aligned_cols=31  Identities=3%  Similarity=-0.168  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      .....++..+++.++.+++.||+|||....+
T Consensus       235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  265 (377)
T PRK11102        235 YFALNIVFLFVMTIINSRFVRRVGALNMLRF  265 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3445566778888999999999999865443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.03  E-value=0.24  Score=38.16  Aligned_cols=31  Identities=23%  Similarity=0.160  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      .....++..+++.++.+++.||+|||.....
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  282 (365)
T TIGR00900       252 VLAAFGLGALLGALLLGLLGRYFKRMALMTG  282 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            3445667778888899999999999876654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=94.94  E-value=0.089  Score=42.52  Aligned_cols=30  Identities=3%  Similarity=0.223  Sum_probs=22.8

Q ss_pred             chhHHHHHHHHHHHHHH-HHHhhcccCChHH
Q psy2968          22 ANWQYLCVITSLPLLVA-VITPWIVPESARW   51 (173)
Q Consensus        22 ~~WR~~~~i~~~~~~~~-~~~~~~lPESP~w   51 (173)
                      .+||..+++.+++.++. ++..+++||+|+.
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  212 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDTPQS  212 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence            38999999988876664 4556678999875

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=94.86  E-value=0.15  Score=39.66  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         111 LIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      ....++..+++.++++++.||+|||.....
T Consensus       267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  296 (366)
T TIGR00886       267 ASLGGLLGSLARPLGGAISDRLGGARKLLM  296 (366)
T ss_pred             HHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence            344566778888899999999999754443

>PRK12382 putative transporter; Provisional

Probab=94.61  E-value=0.45  Score=37.63  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         111 LIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      ....++..+++.++.+.+.||+|+|......
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~  285 (392)
T PRK12382        255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVS  285 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeehHHH
Confidence            3445666777888899999999998666543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=94.57  E-value=0.35  Score=37.78  Aligned_cols=31  Identities=16%  Similarity=0.082  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      .....++..+++.++.+++.||+|+|....+
T Consensus       247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  277 (385)
T TIGR00710       247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRM  277 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3445667788899999999999998865443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=94.35  E-value=0.04  Score=42.79  Aligned_cols=48  Identities=13%  Similarity=0.419  Sum_probs=29.8

Q ss_pred             hhHHHHHHHHHH-HHHHhc---chhHHHHHHHHHHHHH-HHHHhhcccCChHH
Q psy2968           4 AIFFTLAASLLP-WIAYYV---ANWQYLCVITSLPLLV-AVITPWIVPESARW   51 (173)
Q Consensus         4 ~~~~~~G~~~~~-~l~~~~---~~WR~~~~i~~~~~~~-~~~~~~~lPESP~w   51 (173)
                      +.+..+|.++++ +++...   .+||+.+.+.++..++ .++..+++||+|+.
T Consensus       125 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (379)
T TIGR00881       125 NCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQS  177 (379)
T ss_pred             hccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccc
Confidence            344556666665 233222   3899999887766555 44555668888753

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=94.31  E-value=0.66  Score=36.92  Aligned_cols=28  Identities=11%  Similarity=-0.218  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         113 ILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      ...+..+++.++.+.+.||+|+|....+
T Consensus       259 ~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        259 PVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3445677788888999999998765544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=94.31  E-value=0.19  Score=40.79  Aligned_cols=30  Identities=3%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             chhHHHHHHHHHHHHHH-HHHhhcccCChHH
Q psy2968          22 ANWQYLCVITSLPLLVA-VITPWIVPESARW   51 (173)
Q Consensus        22 ~~WR~~~~i~~~~~~~~-~~~~~~lPESP~w   51 (173)
                      .+||+.+++.+++.++. ++..+++||+|+.
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            49999999988776654 5556678999875

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=94.21  E-value=0.52  Score=37.33  Aligned_cols=31  Identities=19%  Similarity=0.089  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      .....++..+++.++.+++.||+|+|.....
T Consensus       254 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  284 (399)
T PRK05122        254 ALTLFGVAFVGARLLFGNLINRLGGLRVAIV  284 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3445667778888999999999998865544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=94.21  E-value=0.34  Score=39.34  Aligned_cols=32  Identities=9%  Similarity=0.198  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      .....++..+++.++++++.||+|||....+.
T Consensus       296 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g  327 (485)
T TIGR00711       296 HILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG  327 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence            34445667888899999999999999766554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=94.14  E-value=0.27  Score=38.92  Aligned_cols=32  Identities=3%  Similarity=-0.122  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      .....++..+++.++.+++.||+|||....+.
T Consensus       244 ~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~  275 (392)
T PRK10473        244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTS  275 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34456777888899999999999998765543

>PTZ00207 hypothetical protein; Provisional

Probab=93.63  E-value=0.22  Score=42.20  Aligned_cols=67  Identities=16%  Similarity=0.088  Sum_probs=40.6

Q ss_pred             hhHHHHHHHHHHHH-HHh-cchhHHHHHHHHHHHHH-HHHHhh--cccCChHHHHHcCChHHHHHHHHHHHH
Q psy2968           4 AIFFTLAASLLPWI-AYY-VANWQYLCVITSLPLLV-AVITPW--IVPESARWLVSQGRVDEAVVIMKRFEK   70 (173)
Q Consensus         4 ~~~~~~G~~~~~~l-~~~-~~~WR~~~~i~~~~~~~-~~~~~~--~lPESP~wl~~kg~~~ea~~~l~~i~~   70 (173)
                      ..+..+|..+...+ ... ..+|+..+++.++..++ .++...  ..|++|+|...+++.+++++.++++++
T Consensus       161 ~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~  232 (591)
T PTZ00207        161 KTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRK  232 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhh
Confidence            44555666432222 222 23788877766554443 333333  378889998888887888888777764

>TIGR00805 oat sodium-independent organic anion transporter

Probab=93.59  E-value=0.39  Score=41.14  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHhcccccCCCC
Q psy2968         117 IGILGGALCLFLPETLGQDL  136 (173)
Q Consensus       117 ~~~~~~~~~~~l~d~~grr~  136 (173)
                      ..+++.++++++.||++.+.
T Consensus       379 ~~~vG~~l~G~l~~r~~~~~  398 (633)
T TIGR00805       379 AAGLGYLIGGFIMKKFKLNV  398 (633)
T ss_pred             HHHHHHhhhhheeeeecccH
Confidence            34678889999999999764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11043 putative transporter; Provisional

Probab=93.55  E-value=0.77  Score=36.43  Aligned_cols=27  Identities=15%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy2968          23 NWQYLCVITSLPLLVAVITPWIVPESA   49 (173)
Q Consensus        23 ~WR~~~~i~~~~~~~~~~~~~~lPESP   49 (173)
                      +||+.+.+..+..++..+..++++|++
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        158 GWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            899999988887777666666666665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=93.45  E-value=0.48  Score=37.53  Aligned_cols=42  Identities=2%  Similarity=-0.184  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccC
Q psy2968           6 FFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPE   47 (173)
Q Consensus         6 ~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPE   47 (173)
                      +..+|.+++.......   .+||..+++.++..++..+..++++|
T Consensus       141 g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456666666443222   28999999988776665544444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=93.40  E-value=0.88  Score=41.30  Aligned_cols=32  Identities=16%  Similarity=-0.178  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      .....++..+++.++++++.||++++....+.
T Consensus       274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~  305 (1146)
T PRK08633        274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLG  305 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceEccchhHH
Confidence            34456667788899999999999887655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=93.40  E-value=0.087  Score=42.98  Aligned_cols=32  Identities=9%  Similarity=0.133  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      .......+..+++.++++++.||+|||....+
T Consensus       298 ~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~  329 (467)
T PRK09556        298 NTFTLFEIGALVGSLLWGWLSDLANGRRALVA  329 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            33445667789999999999999998865543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=93.18  E-value=1.3  Score=35.46  Aligned_cols=47  Identities=6%  Similarity=0.097  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCChHH
Q psy2968           5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESARW   51 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP~w   51 (173)
                      ....+|..+++.++-.+   .+||+.+.+..+..++..+..+.+||+|+.
T Consensus       153 ~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (417)
T PRK10489        153 LTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPP  202 (417)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            34455555555554332   279999998888777767777778887643

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=93.14  E-value=0.093  Score=40.35  Aligned_cols=49  Identities=22%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             hhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHH-hhcccCChHH
Q psy2968           3 IAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVIT-PWIVPESARW   51 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~-~~~lPESP~w   51 (173)
                      .+....+|.++++.++..+.   +||+.+++.++..++..++ ..++++.|.-
T Consensus       126 ~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  178 (352)
T PF07690_consen  126 LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP  178 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred             ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence            35567788888877766654   7999999998888776553 3455555533

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=93.14  E-value=0.8  Score=36.54  Aligned_cols=46  Identities=7%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-HhhcccCChH
Q psy2968           5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPESAR   50 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~-~~~~lPESP~   50 (173)
                      ..+++|.+++..++..+   .+||+.+++.++..++..+ ....+||+|+
T Consensus       151 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        151 GAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            33455665555554443   2899999988766655433 3445899874

>KOG2532|consensus

Probab=93.01  E-value=0.5  Score=38.97  Aligned_cols=42  Identities=10%  Similarity=0.115  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh-hcccCChH
Q psy2968           9 LAASLLPWIAYYVANWQYLCVITSLPLLVAVITP-WIVPESAR   50 (173)
Q Consensus         9 ~G~~~~~~l~~~~~~WR~~~~i~~~~~~~~~~~~-~~lPESP~   50 (173)
                      ++..+++.+.....||+.+|++.++.+++..++. ++.-|+|.
T Consensus       179 ~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  179 ITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             HHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3333344343332399999999998887765554 45677874

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=92.26  E-value=0.71  Score=36.97  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         113 ILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      +..+..+++.++.+++.||+|+|....+.
T Consensus       265 ~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       265 IAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            44667788888899999999998665544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=92.00  E-value=1.4  Score=34.89  Aligned_cols=29  Identities=14%  Similarity=0.078  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968         114 LGMIGILGGALCLFLPETLGQDLPQTLQD  142 (173)
Q Consensus       114 ~~~~~~~~~~~~~~l~d~~grr~~~~i~~  142 (173)
                      .++..+++....+++.||+|||.......
T Consensus       267 ~~l~~~~~~~~~g~l~dr~g~~~~~~~~~  295 (408)
T PRK09874        267 PGVAALLSAPRLGKLGDRIGPEKILITAL  295 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence            34556677777889999999987765543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=91.54  E-value=0.67  Score=37.28  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHH-hhcccCChH
Q psy2968           7 FTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVIT-PWIVPESAR   50 (173)
Q Consensus         7 ~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~-~~~lPESP~   50 (173)
                      ..+|..++..++..+   .+||+.+++.++..++..+. .+.+||+++
T Consensus       149 ~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        149 VLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            444555555554333   28999999988877765544 456899864

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=91.48  E-value=1.1  Score=35.55  Aligned_cols=29  Identities=7%  Similarity=0.004  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968         114 LGMIGILGGALCLFLPETLGQDLPQTLQD  142 (173)
Q Consensus       114 ~~~~~~~~~~~~~~l~d~~grr~~~~i~~  142 (173)
                      .++...++....+.+.||+|||....+..
T Consensus       263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~  291 (396)
T TIGR00882       263 GELLNALIMFCAPLIINRIGAKNALLIAG  291 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            44556667788889999999998776644

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=89.86  E-value=0.67  Score=35.32  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHhhccc
Q psy2968           4 AIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVITPWIVP   46 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~~~~~lP   46 (173)
                      +....+|..+++.++..+.   +||+.+.+.+++.++..+...++|
T Consensus       129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (352)
T cd06174         129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL  174 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666655442   699999998888777666665555

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09528 lacY galactoside permease; Reviewed

Probab=89.80  E-value=5.2  Score=32.02  Aligned_cols=28  Identities=14%  Similarity=0.107  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCCcch
Q psy2968         113 ILGMIGILGGALCLFLPETLGQDLPQTL  140 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i  140 (173)
                      +.++...++.++++++.||+|||.....
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~  297 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLL  297 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence            3455667888899999999999977544

>PRK10133 L-fucose transporter; Provisional

Probab=89.75  E-value=1.9  Score=35.07  Aligned_cols=33  Identities=9%  Similarity=-0.141  Sum_probs=25.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      .......+..+++.+++.++.||+|+|......
T Consensus       299 ~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~  331 (438)
T PRK10133        299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            445667778899999999999999998654443

>PRK03699 putative transporter; Provisional

Probab=88.18  E-value=3.3  Score=32.87  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         111 LIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      ...+.+...++.++.+++.||++||......
T Consensus       247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence            3455667888999999999999998766543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=87.76  E-value=1.3  Score=36.44  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVA-VITPWIVPESAR   50 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~-~~~~~~lPESP~   50 (173)
                      ...+.+|..+++.++-.+   .+||+.+++.....++. ++..+++||+|.
T Consensus       137 ~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        137 AAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            344556666666665444   28999999876555543 344566888763

>PRK15011 sugar efflux transporter B; Provisional

Probab=86.91  E-value=1.4  Score=34.98  Aligned_cols=44  Identities=16%  Similarity=0.247  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHH-HHhhcccCCh
Q psy2968           6 FFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAV-ITPWIVPESA   49 (173)
Q Consensus         6 ~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~-~~~~~lPESP   49 (173)
                      ..++|.+++..++..+   .+||..+++.++..++.. ...+++||+|
T Consensus       151 ~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        151 QVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            4556666666665444   299999998877665544 4455689886

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=86.24  E-value=5.8  Score=31.94  Aligned_cols=26  Identities=12%  Similarity=-0.000  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         116 MIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       116 ~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      ....+|-++++++.||+++|....+.
T Consensus       280 ~~~~vGR~~~~~l~~r~~~~~~l~i~  305 (410)
T TIGR00885       280 VIFFISRFIGTWLISYLAAHKVLMAY  305 (410)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            55678899999999999988655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=86.04  E-value=2.1  Score=34.03  Aligned_cols=33  Identities=12%  Similarity=0.034  Sum_probs=26.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcchH
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQ  141 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~  141 (173)
                      ......++.++++.++.+++.||+|||....+.
T Consensus       244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~  276 (393)
T PRK09705        244 SLLALMTLGQAAGALLMPAMARHQDRRKLLMLA  276 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence            445577888899999999999999998665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=85.40  E-value=3  Score=32.94  Aligned_cols=31  Identities=13%  Similarity=-0.184  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968         113 ILGMIGILGGALCLFLPETLGQDLPQTLQDG  143 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~  143 (173)
                      ...+..+++..+...+.||+|.|....+...
T Consensus       248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            3445556667777788899998876655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=85.22  E-value=9.2  Score=35.02  Aligned_cols=46  Identities=13%  Similarity=0.086  Sum_probs=28.3

Q ss_pred             hhHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCCh
Q psy2968           4 AIFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPESA   49 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPESP   49 (173)
                      +...++|.++++.++-.+   .+|++.+.+..+..++.++..+++||++
T Consensus       150 ~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        150 EAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            444555555555554333   3899999666666666666666777764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=85.13  E-value=17  Score=28.87  Aligned_cols=30  Identities=7%  Similarity=-0.179  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968         110 PLIILGMIGILGGALCLFLPETLGQDLPQT  139 (173)
Q Consensus       110 ~~i~~~~~~~~~~~~~~~l~d~~grr~~~~  139 (173)
                      .....++..++++++...+.|+.+++....
T Consensus       246 ~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~  275 (393)
T PRK11195        246 LQAVVAIGIAVGAGAAARLVTLETVLRVLP  275 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence            344566777888888888888888775443

>KOG1330|consensus

Probab=84.47  E-value=0.062  Score=43.86  Aligned_cols=46  Identities=13%  Similarity=0.124  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHH-HHhhcccCChH
Q psy2968           5 IFFTLAASLLPWIAYYV----ANWQYLCVITSLPLLVAV-ITPWIVPESAR   50 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~----~~WR~~~~i~~~~~~~~~-~~~~~lPESP~   50 (173)
                      +..++|..++++.+..+    ..|||-++..++.+++.. +.+++.+|.+|
T Consensus       164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            33444444444443333    259999999988877755 44566888753

>KOG3626|consensus

Probab=82.38  E-value=5  Score=35.09  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy2968          23 NWQYLCVITSLPLLVAVITPWIVPES   48 (173)
Q Consensus        23 ~WR~~~~i~~~~~~~~~~~~~~lPES   48 (173)
                      .|+.=|++++...++..+.+++.|..
T Consensus       320 AWWlGFLi~g~~~~~~a~p~f~fPk~  345 (735)
T KOG3626|consen  320 AWWLGFLICGALLLFSAVPLFFFPKE  345 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            48888888888887777777766554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=82.06  E-value=4.3  Score=32.09  Aligned_cols=28  Identities=14%  Similarity=0.140  Sum_probs=20.3

Q ss_pred             hhHHHHHHHHHHHHHH-HHHhhcccCChH
Q psy2968          23 NWQYLCVITSLPLLVA-VITPWIVPESAR   50 (173)
Q Consensus        23 ~WR~~~~i~~~~~~~~-~~~~~~lPESP~   50 (173)
                      +||+.+.+..+..++. ++..+++||+|+
T Consensus       160 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        160 GWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            8999999887765543 444567899874

>TIGR00889 2A0110 nucleoside transporter

Probab=82.05  E-value=13  Score=29.95  Aligned_cols=35  Identities=11%  Similarity=-0.059  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHHh
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQDG  143 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~~  143 (173)
                      ....+..+..+++.++.+.+.||+|||....+...
T Consensus       255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~  289 (418)
T TIGR00889       255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV  289 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            33344555677778888999999999987766543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=81.93  E-value=4.7  Score=25.95  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHH-HhhcccCC
Q psy2968           5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVI-TPWIVPES   48 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~-~~~~lPES   48 (173)
                      ....+|..+++.++...   .+|++.+.+..+..++..+ ..++.||+
T Consensus        94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        94 AGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            34445555554443333   2799988887776665444 34456764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=81.12  E-value=3  Score=32.94  Aligned_cols=44  Identities=9%  Similarity=0.012  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy2968           5 IFFTLAASLLPWIAYYV---ANWQYLCVITSLPLLVAVITPWIVPES   48 (173)
Q Consensus         5 ~~~~~G~~~~~~l~~~~---~~WR~~~~i~~~~~~~~~~~~~~lPES   48 (173)
                      ...++|..+++.++-.+   .+||..+++.++..++..+...+.||.
T Consensus       135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            34456666666665443   289999988776555444444456765

>TIGR00897 2A0118 polyol permease family

Probab=80.01  E-value=27  Score=27.77  Aligned_cols=27  Identities=11%  Similarity=-0.043  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHhcccccCCCCCc
Q psy2968         112 IILGMIGILGGALCLFLPETLGQDLPQ  138 (173)
Q Consensus       112 i~~~~~~~~~~~~~~~l~d~~grr~~~  138 (173)
                      ...++.+.++.++.+++.||+|||...
T Consensus       264 ~~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       264 GTFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            355677899999999999999988654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		5e-04

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 23  NWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQ 82
            W+Y+     +P L+ ++  + VPES RWL+S+G+ ++A  I++   KI    +  +  Q
Sbjct: 198 GWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR---KIMGNTLATQAVQ 254
Query: 83  QLKETCQRQAK 93
           ++K +     K
Sbjct: 255 EIKHSLDHGRK 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.52
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.41
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.4
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	91.66

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.52  E-value=1.6e-14  Score=115.57  Aligned_cols=137  Identities=20%  Similarity=0.347  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhhcccCChHHHHHcCChHHHHHHHHHHHHH
Q psy2968           3 IAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKI   71 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~-----------~~WR~~~~i~~~~~~~~~~~~~~lPESP~wl~~kg~~~ea~~~l~~i~~~   71 (173)
                      .+.++.+|.+++.++++..           ..||+++.+..++.++.++.++++|||||||..|++.+|+.+.+++..+.
T Consensus       167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~  246 (491)
T 4gc0_A          167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN  246 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence            4566778888877777654           26999999999999999999999999999999999999999999998764


Q ss_pred             cCCCCChHHHHHHHHHHHHHh---hhhhhccccc--------------------------------cccccchhHHHHHH
Q psy2968          72 NNKKVDPKLYQQLKETCQRQA---KQEIDGKRYS--------------------------------AVINPKLPLIILGM  116 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------------------------------~~~~~~~~~i~~~~  116 (173)
                      +...   +...+..+......   ..........                                ...+.....+..++
T Consensus       247 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          247 TLAT---QAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             chhH---HHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence            3211   11111111111000   0000000000                                11223344566788


Q ss_pred             HHHHHHHHHHhcccccCCCCCcchHH
Q psy2968         117 IGILGGALCLFLPETLGQDLPQTLQD  142 (173)
Q Consensus       117 ~~~~~~~~~~~l~d~~grr~~~~i~~  142 (173)
                      +.+++++++.++.||+|||.......
T Consensus       324 ~~~~~~~~~~~l~dr~Grr~~~~~~~  349 (491)
T 4gc0_A          324 INLTFTVLAIMTVDKFGRKPLQIIGA  349 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCcchhccch
Confidence            89999999999999999998766544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.51  E-value=0.00089  Score=52.27  Aligned_cols=49  Identities=6%  Similarity=0.151  Sum_probs=33.5

Q ss_pred             hhHHHHHHHHHHHHHHhc---ch-hHHHHHHHHHHHHHH-HHHhhcccCChHHH
Q psy2968           4 AIFFTLAASLLPWIAYYV---AN-WQYLCVITSLPLLVA-VITPWIVPESARWL   52 (173)
Q Consensus         4 ~~~~~~G~~~~~~l~~~~---~~-WR~~~~i~~~~~~~~-~~~~~~lPESP~wl   52 (173)
                      +.+..+|.++++.++..+   .+ ||+.+++.+++.++. ++..+++||+|+..
T Consensus       161 ~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  214 (451)
T 1pw4_A          161 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  214 (451)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence            455666666666665332   26 999999988877664 44556799999764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.41  E-value=0.046  Score=43.13  Aligned_cols=31  Identities=10%  Similarity=0.045  Sum_probs=22.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcc
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQT  139 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~  139 (173)
                      ......++..+++..+.+++.||+|||.+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~  353 (491)
T 4aps_A          323 WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS  353 (491)
T ss_dssp             GGTTHHHHHHHHHHHHHHHHHHHTTTC---C
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhccCCCc
Confidence            4445667777888888999999999986544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.40  E-value=0.0027  Score=49.41  Aligned_cols=34  Identities=9%  Similarity=-0.140  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968         109 LPLIILGMIGILGGALCLFLPETLGQDLPQTLQD  142 (173)
Q Consensus       109 ~~~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~  142 (173)
                      ......++..+++.++++++.||+|||....+..
T Consensus       299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  332 (438)
T 3o7q_A          299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            4455567788899999999999999997665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=91.66  E-value=0.19  Score=38.09  Aligned_cols=49  Identities=14%  Similarity=0.193  Sum_probs=36.3

Q ss_pred             hhhHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHH-HhhcccCChHH
Q psy2968           3 IAIFFTLAASLLPWIAYYVA---NWQYLCVITSLPLLVAVI-TPWIVPESARW   51 (173)
Q Consensus         3 ~~~~~~~G~~~~~~l~~~~~---~WR~~~~i~~~~~~~~~~-~~~~lPESP~w   51 (173)
                      .+.+..+|.++++.++..+.   +||+.+.+.++..++..+ ..+++||+|+.
T Consensus       129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            34566777777777766553   899999998887776655 56679999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.12
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	88.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0023  Score=47.72  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=24.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhcccccCCCCCc
Q psy2968         108 KLPLIILGMIGILGGALCLFLPETLGQDLPQ  138 (173)
Q Consensus       108 ~~~~i~~~~~~~~~~~~~~~l~d~~grr~~~  138 (173)
                      .......++..+++.++++++.||++|+...
T Consensus       288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             hhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence            3445567778889999999999999988643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=88.39  E-value=0.034  Score=39.97  Aligned_cols=32  Identities=6%  Similarity=-0.013  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCCcchHH
Q psy2968         111 LIILGMIGILGGALCLFLPETLGQDLPQTLQD  142 (173)
Q Consensus       111 ~i~~~~~~~~~~~~~~~l~d~~grr~~~~i~~  142 (173)
                      .....+...++..+...+.||.|+|....+..
T Consensus       265 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  296 (417)
T d1pv7a_         265 TTMGELLNASIMFFAPLIINRIGGKNALLLAG  296 (417)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccchhhhH
Confidence            34456667778888889999999987665543