Psyllid ID: psy3053
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 917 | 2.2.26 [Sep-21-2011] | |||||||
| Q92636 | 917 | Protein FAN OS=Homo sapie | yes | N/A | 0.916 | 0.916 | 0.379 | 1e-171 | |
| O35242 | 920 | Protein FAN OS=Mus muscul | yes | N/A | 0.913 | 0.910 | 0.372 | 1e-167 | |
| Q54PP7 | 1154 | BEACH domain-containing p | yes | N/A | 0.470 | 0.373 | 0.456 | 1e-120 | |
| Q9ESE1 | 2856 | Lipopolysaccharide-respon | no | N/A | 0.753 | 0.241 | 0.34 | 1e-97 | |
| Q54U63 | 2491 | BEACH domain-containing p | no | N/A | 0.763 | 0.281 | 0.326 | 2e-97 | |
| P50851 | 2863 | Lipopolysaccharide-respon | no | N/A | 0.752 | 0.241 | 0.344 | 5e-97 | |
| Q9W4E2 | 3578 | Neurobeachin OS=Drosophil | yes | N/A | 0.764 | 0.195 | 0.320 | 2e-95 | |
| Q9EPN1 | 2936 | Neurobeachin OS=Mus muscu | no | N/A | 0.678 | 0.211 | 0.332 | 1e-92 | |
| Q8NFP9 | 2946 | Neurobeachin OS=Homo sapi | no | N/A | 0.678 | 0.211 | 0.326 | 1e-90 | |
| Q19317 | 2507 | Putative neurobeachin hom | yes | N/A | 0.755 | 0.276 | 0.314 | 1e-88 |
| >sp|Q92636|FAN_HUMAN Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 601 bits (1549), Expect = e-171, Method: Compositional matrix adjust.
Identities = 345/908 (37%), Positives = 511/908 (56%), Gaps = 68/908 (7%)
Query: 15 FSLLLLEPGEFYFDDLSVVLILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKIPL 74
FSLLLL E+YF+ IL +K + E + G LK+CSKS++F+P +++ P+IKIPL
Sbjct: 21 FSLLLLNLEEYYFEQHRANHIL-HKGSHHERKIRGSLKICSKSVIFEPDSISQPIIKIPL 79
Query: 75 KECTSLSKF-----EPPLTSKLNGNI-LDVTCTAYIEMLADVCLVSIE------------ 116
++C + K T +G I L + +I+ V IE
Sbjct: 80 RDCIKIGKHGENGANRHFTKAKSGGISLIFSQVYFIKEHNVVAPYKIERGKMEYVFELDV 139
Query: 117 ------------QLHRAASLPA-AEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETF 163
QLHRA+ L +Q M+ I +R ++ SF+ + +++ EK+ +E
Sbjct: 140 PGKVEDVVETLLQLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECK 199
Query: 164 GNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIY 223
+TPLV NPG + ++ TNLYFQP N P ++++ L ++RI +RR L +G+E++
Sbjct: 200 AEMVTPLVTNPGHVCITDTNLYFQPLNGY-PKPVVQITLQDVRRIYKRRHGLMPLGLEVF 258
Query: 224 FKDLEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMY 283
+ + +YL RD LY + E ++ E L+WQ G LSNY YL++
Sbjct: 259 CTEDDLCSDIYLKFYEPQDRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLH 318
Query: 284 LNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERY 343
LN+LADRS NDL+QYPVFPW+I +Y+ LDLS+ +RDLSKP+GALN RLERL RY
Sbjct: 319 LNNLADRSCNDLSQYPVFPWIIHDYSSSELDLSNPGTFRDLSKPVGALNKERLERLLTRY 378
Query: 344 NEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTN 403
EMP PKF+YGSHYS+PG+VLFYLVR P+YMLCLQNGRFD+ DRMFNSI + W+N L
Sbjct: 379 QEMPEPKFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDG 438
Query: 404 MSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQA 463
+DFKEL+PEFY + FL NS + G R G V V+LPPWA PE F+ K + A
Sbjct: 439 ATDFKELIPEFYGDDVS--FLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSKDA 496
Query: 464 LESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQ 523
LES+ VS LH WIDLIFGYKQ+G +A A N+F+ L YEG V+L+ +QD +++ A+ Q
Sbjct: 497 LESNYVSEHLHEWIDLIFGYKQKGSDAVGAHNVFHPLTYEGGVDLNSIQDPDEKVAMLTQ 556
Query: 524 IMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNS-----------------WCD 566
I+EFGQ PKQ+F +PHPRR SL + S+ + +++S W +
Sbjct: 557 ILEFGQTPKQLFVTPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEESKTLAWNN 616
Query: 567 KSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLS 626
+ L+ HKEA+T + + G SV + +D+ LK+ S ++ +RS S+M LS
Sbjct: 617 ITKLQLHEHYKIHKEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALS 676
Query: 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC 686
S +LP + T++ WD+ V Y + GR L GH+DA+S + W + RL S SWD
Sbjct: 677 SCLLLPGDATVITSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHD--NRLYSASWDS 734
Query: 687 TVRVWN------TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740
TV+VW+ G H L+++L+ D + ++++ + L GT+ G + IW
Sbjct: 735 TVKVWSGVPAEMPGTKRHHF----DLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIW 790
Query: 741 SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800
L + Q+ + V FS D VLS G + LNV D+ TGM + + +E
Sbjct: 791 DLTTATLMHQIPCH-SGIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQ 849
Query: 801 LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDN--CTMLVGCWDS 858
C W G V+ G G + + DL+ ++ ++++ H AV + + +++ G D
Sbjct: 850 RCFVWDG-NSVLSGSQSGELLVWDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDR 908
Query: 859 CVVIYDVE 866
++ + ++
Sbjct: 909 QIIFWKLQ 916
|
Couples the p55 TNF-receptor (TNF-R55 / TNFR1) to neutral sphingomyelinase (N-SMASE). Specifically binds to the N-smase activation domain of TNF-R55. May regulate ceramide production by N-SMASE. Homo sapiens (taxid: 9606) |
| >sp|O35242|FAN_MOUSE Protein FAN OS=Mus musculus GN=Nsmaf PE=2 SV=2 | Back alignment and function description |
|---|
Score = 590 bits (1520), Expect = e-167, Method: Compositional matrix adjust.
Identities = 340/913 (37%), Positives = 512/913 (56%), Gaps = 75/913 (8%)
Query: 15 FSLLLLEPGEFYFDDLSVVLILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKIPL 74
FSLLLL E+YF+ + + ++ ++EE + G LK+CSKS++F+P ++ P++KIPL
Sbjct: 21 FSLLLLNLEEYYFEQHTAFHV-QHQGSQEERKIRGSLKICSKSVIFEPDAISQPILKIPL 79
Query: 75 KECTSLSKFEPPLTSKLNGN----------------------------------ILDVTC 100
++C + K +K + ++
Sbjct: 80 RDCLKIGKHGENGANKHFAKAKSWGISLIFSQIYFIKEHNIVAPYKIERGKMEYVFELEV 139
Query: 101 TAYIEMLADVCLVSIEQLHRAASLPA-AEQNQMVATIATARQSKVSFNLSWLEDLYEKVI 159
+ +E + + L QLHRA+ L +Q M+ I +R ++ SF+ + + + EK+
Sbjct: 140 SGKVEDVVETLL----QLHRASCLDKLGDQMAMITAILQSRLARTSFDKNRFQSVSEKLH 195
Query: 160 LETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVG 219
+E +TPLV NPG + ++ T+LYFQP N P ++++ L ++RI +RR L +G
Sbjct: 196 MECKAEMVTPLVTNPGHVCITDTSLYFQPLNGY-PKPVVQITLQDVRRIYKRRHGLMPLG 254
Query: 220 IEIYFKDLEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYD 279
+E++ D + +YL RD LY + E + E L+WQ G LSNY
Sbjct: 255 LEVFCTDDDLCSDIYLKFYEPQDRDDLYFYIATYLEHHAAEHTAESYMLQWQRGHLSNYQ 314
Query: 280 YLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERL 339
YL++LN+LADRS NDL+QYPVFPW+IS+Y+ LDLS+ +RDLSKP+GALN RLERL
Sbjct: 315 YLLHLNNLADRSCNDLSQYPVFPWIISDYSSPELDLSNPATFRDLSKPVGALNAERLERL 374
Query: 340 KERYNEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRN 399
RY EMP P+F+YGSHYS+PG+VLFYLVR P+YMLCLQNGRFD+ DRMFNSI + W+N
Sbjct: 375 LTRYQEMPEPRFMYGSHYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKN 434
Query: 400 VLTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTK 459
L +DFKEL+PEFYD + FL NS + G R G V V LP WA P+ F+ K
Sbjct: 435 CLDGATDFKELIPEFYDEDVS--FLVNSLKLDLGKRQGGQMVDDVDLPAWASSPQDFLQK 492
Query: 460 LRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHA 519
+ ALES VS LH WIDLIFGYKQ+G EA A N+F+ L YEG V+L+ ++D +++ A
Sbjct: 493 NKDALESGYVSEHLHEWIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDEKVA 552
Query: 520 LEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNS---------------- 563
+ QI+EFGQ PKQ+F +PHPRR SL + S+ + +++S
Sbjct: 553 MLTQILEFGQTPKQLFVTPHPRRITPKFKSLSQASSYNASLTDSPVSPGEESFEDLTEES 612
Query: 564 ----WCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV 619
W + + L+ HKEA+T +A+ G SV + +D+ LK+ S ++ +RS
Sbjct: 613 RTLAWSNIAKLQLHEQYKIHKEAVTGIAVSCNGSSVFTTSQDSTLKMFSKESKMLQRSIS 672
Query: 620 LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 679
S+M LSS +LP + T++ WD+ V Y + GR L GH+DA+S + W RL
Sbjct: 673 FSNMALSSCLLLPGDTTVISSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICW--HNDRL 730
Query: 680 ISGSWDCTVRVWNTGASWSHMKPSK----SLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735
SGSWD TV+VW +G + M +K L+++L+ D + + ++ + L GT+ G
Sbjct: 731 YSGSWDSTVKVW-SGVP-AEMPGTKRHQFDLLAELEHDVSVNTINLNAVSTLLVSGTKEG 788
Query: 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795
+ IW L + Q S + +V FS D +LS G + LNV D+ TGM + +
Sbjct: 789 MVNIWDLTTATLLHQTSCH-SGTVCDAAFSPDSRHILSTGVDGCLNVIDVQTGMLISSMA 847
Query: 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDN--CTMLV 853
EE C W G V+ G G + + DL+ ++ ++++ H AV + + +++
Sbjct: 848 SEEPQRCFVWDG-NSVLSGSRSGELLVWDLLGAKVSERIQGHTGAVTCMWMNEQCSSIIT 906
Query: 854 GCWDSCVVIYDVE 866
G D ++ + ++
Sbjct: 907 GGEDRQIMFWKLQ 919
|
Couples the p55 TNF-receptor (TNF-R55 / TNFR1) to neutral sphingomyelinase (N-SMASE). Specifically binds to the N-smase activation domain of TNF-R55. May regulate ceramide production by N-SMASE. Mus musculus (taxid: 10090) |
| >sp|Q54PP7|LVSF_DICDI BEACH domain-containing protein lvsF OS=Dictyostelium discoideum GN=lvsF PE=4 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/456 (45%), Positives = 306/456 (67%), Gaps = 25/456 (5%)
Query: 109 DVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKIT 168
++ L ++ H + ++++++ + R++K+ F+++ L D+ E+ ILE +KI+
Sbjct: 245 NIVLDVMKVFHNYSGKEKIQRDELIKQMVEDRENKIFFDITQLVDMNERNILELKCSKIS 304
Query: 169 PLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLE 228
PLV NPGR+++++ LYFQP NNIE ++L L I R+++RR L+++G+E++F D
Sbjct: 305 PLVENPGRLLITNARLYFQPMNNIEENRLKNYSLQSIIRVLQRRHSLREIGLELFFDD-- 362
Query: 229 PVKYLYLTLKTQGARDTLYNALLDLPELQLSH-SDQEIMTLRWQNGALSNYDYLMYLNSL 287
L+L R+ +Y+ L+ + H ++Q L+WQNG +SNYDYL+YLN+L
Sbjct: 363 -GSSLFLKFNNTITRNQVYDLLVKHLCTNIMHINEQANYLLKWQNGIISNYDYLLYLNNL 421
Query: 288 ADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMP 347
A R+ NDLTQYPVFPW+I++Y TLDL+ + +RDLSKPIGALNPTRL ++RY+++P
Sbjct: 422 AGRTFNDLTQYPVFPWIIADYQSTTLDLNRNETFRDLSKPIGALNPTRLATFQDRYHQIP 481
Query: 348 --HPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMS 405
PKFLYG+HYSTP +VL++LVR+ P+YML LQNGRFD P+RMF SI + W +VL + +
Sbjct: 482 DDQPKFLYGTHYSTPAYVLYFLVRQVPEYMLRLQNGRFDSPNRMFYSIEETWNSVLNSTT 541
Query: 406 DFKELVPEFYDTE-------------------QKGDFLENSYGIHFGYRYDGTKVGGVQL 446
D KEL+PEFY + G FL NS + G R D + + L
Sbjct: 542 DVKELIPEFYKPSFESSSSSRNGGGGDDDDNFENGIFLTNSENLPLGIRQDNNVINDIIL 601
Query: 447 PPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSV 506
PPWA P+ F++KL QALES+ VS+ LH WIDLIFGYKQ+G EA +A+NLFY+L YEGS+
Sbjct: 602 PPWASSPKDFISKLHQALESEYVSQNLHHWIDLIFGYKQKGEEAVRANNLFYHLTYEGSI 661
Query: 507 NLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
+++ + + +R +E QI EFGQ P+QIF +PHP+R
Sbjct: 662 DIESITNPFEREGMEAQINEFGQTPRQIFKTPHPQR 697
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 272/800 (34%), Positives = 384/800 (48%), Gaps = 109/800 (13%)
Query: 151 LEDLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIEPHKLL------ 198
LE+L V L T + P VV G + ++S+ LYF+ F I+P L
Sbjct: 2064 LENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLH 2123
Query: 199 -KVRLAGIKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLY 247
K I+ I RR+LLQ +EI+ F D VK + L G +
Sbjct: 2124 GKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSF- 2182
Query: 248 NALLDLPELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPW 303
L + L+ Q MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPW
Sbjct: 2183 -GLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPW 2241
Query: 304 VISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTP 360
VI+NY + LDL+ +N+RDLSKPIGALNP R ER+ PKF YG+HYST
Sbjct: 2242 VITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTA 2301
Query: 361 GFVLFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTE 418
FVL +L+R F Y L LQ G+FDH DR F+S+ WRN + SD KEL+PEFY
Sbjct: 2302 SFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLP 2361
Query: 419 QKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWID 478
+ N + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WID
Sbjct: 2362 E---MFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWID 2418
Query: 479 LIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSP 538
LIFGYKQ+G EA +A N+FYYL YEG+VNL+ + D R A+E QI FGQ P Q+ P
Sbjct: 2419 LIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEP 2478
Query: 539 HPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASV 598
HP R Q+S L + +D + + P + +H A T + + +
Sbjct: 2479 HPPRGSAMQASPL----MFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTA 2534
Query: 599 GR-DAMLKIHSLK------------------------TG---RQERSAVLSSMTLSSLC- 629
R A+ K H+L TG RQ + S+ + S C
Sbjct: 2535 NRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIACGTGTHRRQVTDLLDQSIQVHSQCF 2594
Query: 630 -ILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RKRLISGS 683
I DN +LV G WD +Y + G+++ + GH D ++C+A E ++SGS
Sbjct: 2595 VITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGS 2654
Query: 684 WDCTVRV--WNTGASWSHMKPSKSLVSQLDL----DNRIKCLAISKDNNQLAVGTEAGEL 737
D T+ + WN +S P + + D I C A+ + + G++ G
Sbjct: 2655 RDATLLLWYWNGKSSGIGDNPGGETATPRAILTGHDYEITCAAVCAELGLVLSGSQEGPC 2714
Query: 738 IIWSLENHLMTQQLSDD-------INASVNG--VLFSEDGCRVLSCGNNCMLNVYDLTTG 788
+I S+ L+ + I AS G V+F E+GC C +V G
Sbjct: 2715 LIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGCF-------CTFSV----NG 2763
Query: 789 MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK--DA---VLS 843
++ + + + + + +L G V +V QV LKQ+ A+ DA ++
Sbjct: 2764 KLQATVETDDHIRAIQLSRDGQYLLTGGDNGVVIVR--QVSDLKQLFAYPGCDAGIRAMA 2821
Query: 844 LHFDNCTMLVGCWDSCVVIY 863
L FD ++ G +V++
Sbjct: 2822 LSFDQRCIISGMASGSIVLF 2841
|
May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules. Mus musculus (taxid: 10090) |
| >sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 251/768 (32%), Positives = 379/768 (49%), Gaps = 68/768 (8%)
Query: 156 EKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEP--------------------H 195
EK+I T + ITP G++ +++ NL F + P
Sbjct: 1704 EKLIYSTSCHWITPSSCKKGKLEITTFNLIFTEEEELPPPSTTTTNTTNTTNTNSTTNDS 1763
Query: 196 KLLKVRL---AGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLD 252
LK++ IK + RR+LL+ IEI+ +D K YL + R+ +YN +
Sbjct: 1764 TFLKIKRWPNEMIKDVHLRRYLLRGSAIEIFMRD----KTNYLFNFKKNERNKVYNKINS 1819
Query: 253 LP-----ELQLSHSDQ-EIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVIS 306
+ E LS SD + T WQ +SN+DYLM LN++A R+ NDLTQYPVFPWVI+
Sbjct: 1820 VKREFSKEPTLSPSDMLKKATSEWQARRISNFDYLMTLNTIAGRTYNDLTQYPVFPWVIA 1879
Query: 307 NYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPHP---KFLYGSHYSTPGFV 363
+YT LDL+ + +RDLSKPIGALN RLE K+RY P KF YGSHYS+ G V
Sbjct: 1880 DYTSPVLDLNKAETFRDLSKPIGALNEKRLEIFKDRYESFDDPVIPKFYYGSHYSSAGIV 1939
Query: 364 LFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKG 421
LFYL+R F L LQ GRFDHPDRMF+SI W N LT+ +D KEL+PEFY
Sbjct: 1940 LFYLIRLEPFTTQFLNLQGGRFDHPDRMFDSIALAWDNSLTSSTDVKELIPEFY---YMP 1996
Query: 422 DFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIF 481
+FL N I+FG + +G + V LPPWA P F+ R+ALESD VS LH WIDLIF
Sbjct: 1997 EFLTNHNHINFGIKQNGIGIEDVLLPPWASSPSDFIRINREALESDYVSSHLHEWIDLIF 2056
Query: 482 GYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHP- 540
G KQRG +A++ N+FYYL YEGSV++D ++D R A E QI FGQ P Q+F H
Sbjct: 2057 GIKQRGKQAKEVFNVFYYLTYEGSVDIDSIEDETTRRATESQINNFGQTPTQLFSKKHHI 2116
Query: 541 RRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGR 600
+R ++S + T + + + + P+ + + + + + ++V R
Sbjct: 2117 QRDPLNESHISILKTPPNQLQAYFLKITNKNPIVYVYIPEPNPIMSYLVADKVTVIDKSR 2176
Query: 601 DAML----------KIH--------SLKTGRQERSAVLSSMTLSSLCI-LPDNCTMLVGC 641
KI S T R+ + +T+S C + + ++ C
Sbjct: 2177 TTTNHKWFPSTPNDKISPFTFELDPSSTTKRRIGLPFANDVTISPNCFAITSDGRYVISC 2236
Query: 642 --WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699
WD+ + V+ +++ + H+D ++C++ + LI+GS D TV VW +
Sbjct: 2237 AHWDNSFKLSFVDSAKLIQSVVKHKDTVTCLSLASDGQTLITGSKDTTVMVWRIATTNKS 2296
Query: 700 MKPSKSLVSQLDL---DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN 756
P + V L D+ I C+ ++ + G++ G II +L++ + +
Sbjct: 2297 GAPKFNDVPDHILYGHDDEITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPRQ 2356
Query: 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGA 816
+ ++ + S G V+ + M+ +Y + G+ E + E +I GG
Sbjct: 2357 SPISLIAISNQGYIVIYSQADLMIYLYSINGGLLKTVDTHERLHSIIISKDSEYLITGGE 2416
Query: 817 LGMVYLVDLIQVQLL--KQVRAHKDAVLSLHFDNCTMLVGCWDSCVVI 862
G+V + L ++ K V L++ D ++VG D ++I
Sbjct: 2417 RGVVVIRTLFNLKPTNHKLVFGTPIHSLAMASDQKHLMVGLEDGRLLI 2464
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4 | Back alignment and function description |
|---|
Score = 356 bits (913), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 276/801 (34%), Positives = 385/801 (48%), Gaps = 111/801 (13%)
Query: 151 LEDLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIEPHKLL------ 198
LE+L V L T + P VV G + ++S+ LYF+ F I+P L
Sbjct: 2071 LENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLH 2130
Query: 199 -KVRLAGIKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLY 247
K I+ I RR+LLQ +EI+ F D VK + L G +
Sbjct: 2131 GKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSF- 2189
Query: 248 NALLDLPELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPW 303
L + L+ Q MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPW
Sbjct: 2190 -GLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPW 2248
Query: 304 VISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTP 360
VI+NY + LDL+ N+RDLSKPIGALNP R ERY PKF YG+HYST
Sbjct: 2249 VITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTA 2308
Query: 361 GFVLFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTE 418
FVL +L+R F Y L LQ G+FDH DR F+SI WRN + SD KEL+PEFY
Sbjct: 2309 SFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLP 2368
Query: 419 QKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWID 478
+ N + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WID
Sbjct: 2369 E---MFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWID 2425
Query: 479 LIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSP 538
LIFGYKQ+G EA +A N+FYYL YEG+VNL+ + D R A+E QI FGQ P Q+ P
Sbjct: 2426 LIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEP 2485
Query: 539 HPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASV 598
HP R Q S L + +D + + P + +H A T + + +
Sbjct: 2486 HPPRGSAMQVSPL----MFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTA 2541
Query: 599 GR-DAMLKIHSL------------------------KTG---RQERSAVLSSMTLSSLC- 629
R A+ K H+L TG RQ + S+ + S C
Sbjct: 2542 NRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCF 2601
Query: 630 -ILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RKRLISGS 683
I DN +LV G WD +Y + GR++ + GH D ++C+A E ++SGS
Sbjct: 2602 VITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGS 2661
Query: 684 WDCTVRV--WNTGASWSHMKPSKSLVSQLDL----DNRIKCLAISKDNNQLAVGTEAGEL 737
D T+ + WN S P + + D + C A+ + + G++ G
Sbjct: 2662 RDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPC 2721
Query: 738 IIWSLENHLMTQQLSDD-------INASVNG--VLFSEDGCRVLSCGNNCMLNVY-DLTT 787
+I S+ L+ + I AS G V+F E+G C +V L
Sbjct: 2722 LIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLF-------CTFSVNGKLQA 2774
Query: 788 GMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK--DA---VL 842
M+ + + + + LS G + ++ GG G+V + QV LKQ+ A+ DA +
Sbjct: 2775 TMETDDNI---RAIQLSRDG-QYLLTGGDRGVVVVR---QVSDLKQLFAYPGCDAGIRAM 2827
Query: 843 SLHFDNCTMLVGCWDSCVVIY 863
+L +D ++ G +V++
Sbjct: 2828 ALSYDQRCIISGMASGSIVLF 2848
|
May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules. Homo sapiens (taxid: 9606) |
| >sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 259/808 (32%), Positives = 381/808 (47%), Gaps = 107/808 (13%)
Query: 153 DLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIE-------PHKLLK 199
DL V + T I P +V PG + ++ST ++F+ F I+ H K
Sbjct: 2778 DLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGEVLKYCDHLHGK 2837
Query: 200 VRLAGIKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGAR-----D 244
+ ++ I RR+LLQ V +EI+ F D VK + L G
Sbjct: 2838 WYFSEVRAIFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIP 2897
Query: 245 TLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWV 304
A + P + +S+ MT +WQ +SN++YLM+LN++A R+ NDL QYP+FPWV
Sbjct: 2898 QTRRASMMSPRQLMRNSN---MTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWV 2954
Query: 305 ISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPG 361
++NY LDLS +NYRDLSKPIGALNP+R +ERY P F YG+HYST
Sbjct: 2955 LTNYESKDLDLSLPSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAA 3014
Query: 362 FVLFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQ 419
F L +LVR F L LQ G+FD+PDR+F+S+ W+N + SD KEL+PE+Y
Sbjct: 3015 FTLNWLVRVEPFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLP- 3073
Query: 420 KGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDL 479
+ NS G G+R DG V ++LPPWA+ PE FV R ALES+ VS QLH WIDL
Sbjct: 3074 --EMFYNSSGYRLGHREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDL 3131
Query: 480 IFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPH 539
IFGYKQRG EA +A N+FYYL YEGSV+LD V D R A+E QI FGQ P Q+ PH
Sbjct: 3132 IFGYKQRGPEAIRATNVFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPH 3191
Query: 540 PRRTLTSQSSLLKHSTILSDV----------------SNSWCDKSILEPLHFCHSHKEAI 583
P R+ S + S + D+ +N++ S+ + H+ A+
Sbjct: 3192 PPRSSAMHLSPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAV 3251
Query: 584 --------TAVAICGEGISVASVGR------DAMLKIHSLKTGRQERSAVLSSMTLSSLC 629
+V S S G D +L +H S S +
Sbjct: 3252 NRWNCNYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQML 3311
Query: 630 ILPDNC-------TMLVGC--WDSCVVIYDVECGRIVTELAGHEDAISCVAWDE----KR 676
+ NC L+ C WD+ ++ E +IV + GH ++C+A E
Sbjct: 3312 KIRSNCFVTTVDSRFLIACGFWDNSFRVFATETAKIVQIVFGHFGVVTCMARSECNITSD 3371
Query: 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL----------DNRIKCLAISKDNN 726
+ SGS DCTV +W+ A ++S+V + D+ + + + IS +
Sbjct: 3372 CYIASGSADCTVLLWHWNAR------TQSIVGEGDVPTPRATLTGHEQAVTSVVISAELG 3425
Query: 727 QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786
+ G+ G ++I + L+ S + S +G V++ NV T
Sbjct: 3426 LVVSGSSNGPVLIHTTFGDLLRSLDPPAEFHSPELITMSREGFIVINYDKG---NVAAYT 3482
Query: 787 -TGMQVCNKVFEEKLLC--LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAV-- 841
G ++ ++ + L C LS G E ++ G G+V + + L A +
Sbjct: 3483 INGKKLRHETHNDNLQCMLLSRDG-EYLMTAGDRGIVEVWRTFNLAPLYAFPACNAGIRS 3541
Query: 842 LSLHFDNCTMLVGCWDSCVVIYDVECGR 869
L+L D +L G ++++ ++ R
Sbjct: 3542 LALTHDQKYLLAGLSTGSIIVFHIDFNR 3569
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (875), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 251/756 (33%), Positives = 355/756 (46%), Gaps = 134/756 (17%)
Query: 151 LEDLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIEPHKLL------ 198
+++L V+L T I P+VV G + +++T +YF+ F I+ L
Sbjct: 2135 IDNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDAAFKKIDTKVLAYTEGLH 2194
Query: 199 -KVRLAGIKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLY 247
K + I+ + RR+LLQ +E++ F D VK + +L G T Y
Sbjct: 2195 GKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGV-GTSY 2253
Query: 248 NALLDLPELQLSHSDQ----EIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPW 303
L + L+ Q MT RWQ +SN++YLM+LN++A R+ NDL QYPVFPW
Sbjct: 2254 -GLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPW 2312
Query: 304 VISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYN---EMPHPKFLYGSHYSTP 360
V++NY + LDL+ N+RDLSKPIGALNP R ERY E P F Y +HYST
Sbjct: 2313 VLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQSPPFHYNTHYSTA 2372
Query: 361 GFVLFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTE 418
L +LVR F + L +G+FDHPDR F+SI WR + SD KEL+PEFY
Sbjct: 2373 TSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVKELIPEFYYLP 2432
Query: 419 QKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWID 478
+ NS G H G R D V V LPPWA+ PE FV R ALES+ VS QLH WID
Sbjct: 2433 E---MFVNSNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWID 2489
Query: 479 LIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSP 538
LIFGYKQRG EA +A N+F+YL YEGSVNLD + D R A+E QI FGQ P Q+ P
Sbjct: 2490 LIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEP 2549
Query: 539 HPRRT------LTSQSSLLKHSTILSDV-------SNSWCDKSILEPLHFCHSHKEAITA 585
HP R+ QS L+ + DV SNS L H A+
Sbjct: 2550 HPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTL--PHLTIPAVVT 2607
Query: 586 VAICGEGISV----ASVG------------------RDAMLKIHSLKTGRQERSAVLSSM 623
V C +V +VG D ++ +S RQ V S+
Sbjct: 2608 VT-CSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSI 2666
Query: 624 TLSSLC--ILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR-- 678
+++ C + DN +L+ G WD +Y E G++ + GH D ++C+A E
Sbjct: 2667 QINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGD 2726
Query: 679 --LISGSWDCTVRVW----------NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726
++SGS D T+ +W + S + P L D+ + C+++ +
Sbjct: 2727 CYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGH---DHEVVCVSVCAELG 2783
Query: 727 QLAVGTEAGELIIWSL-----------ENHLMTQQLS----------------------- 752
+ G + G ++ ++ EN L + +S
Sbjct: 2784 LVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSING 2843
Query: 753 -----DDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783
+IN S +L S DG +++ G+N ++ V+
Sbjct: 2844 KLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVW 2879
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking. Mus musculus (taxid: 10090) |
| >sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 247/756 (32%), Positives = 355/756 (46%), Gaps = 134/756 (17%)
Query: 151 LEDLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIEPHKLL------ 198
+++L V+L T I P+VV G + +++T +YF+ F I+ L
Sbjct: 2145 IDNLAGPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLH 2204
Query: 199 -KVRLAGIKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLY 247
K + I+ + RR+LLQ +E++ F D VK + +L G T Y
Sbjct: 2205 GKWMFSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGV-GTSY 2263
Query: 248 NALLDLPELQLSHSDQ----EIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPW 303
L + L+ Q MT RWQ +SN++YLM+LN++A R+ NDL QYPVFPW
Sbjct: 2264 -GLPQARRISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPW 2322
Query: 304 VISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYN---EMPHPKFLYGSHYSTP 360
V++NY + LDL+ N+RDLSKPIGALNP R ERY + P + Y +HYST
Sbjct: 2323 VLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTA 2382
Query: 361 GFVLFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTE 418
L +LVR F + L +G+FDHPDR F+S+ WR + SD KEL+PEFY
Sbjct: 2383 TSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLP 2442
Query: 419 QKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWID 478
+ NS G + G R D V V LPPWA+ PE FV R ALES+ VS QLH WID
Sbjct: 2443 E---MFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWID 2499
Query: 479 LIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSP 538
LIFGYKQRG EA +A N+F+YL YEGSVNLD + D R A+E QI FGQ P Q+ P
Sbjct: 2500 LIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEP 2559
Query: 539 HPRRT------LTSQSSLLKHSTILSDV-------SNSWCDKSILEPLHFCHSHKEAITA 585
HP R+ QS L+ + DV SNS L H A+
Sbjct: 2560 HPPRSSAMHLCFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTL--PHLTIPAVVT 2617
Query: 586 VAICGEGISV----ASVG------------------RDAMLKIHSLKTGRQERSAVLSSM 623
V C +V +VG D ++ +S RQ V S+
Sbjct: 2618 VT-CSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNKRQITDLVDQSI 2676
Query: 624 TLSSLC--ILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR-- 678
+++ C + DN +L+ G WD +Y E G++ + GH D ++C+A E
Sbjct: 2677 QINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGD 2736
Query: 679 --LISGSWDCTVRVW----------NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726
++SGS D T+ +W + S + P L D+ + C+++ +
Sbjct: 2737 CYIVSGSRDATLLLWYWSGRHHIIGDNPNSSDYPAPRAVLTGH---DHEVVCVSVCAELG 2793
Query: 727 QLAVGTEAGELIIWSL-----------ENHLMTQQLS----------------------- 752
+ G + G ++ ++ EN L + +S
Sbjct: 2794 LVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSING 2853
Query: 753 -----DDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783
+IN S +L S DG +++ G+N ++ V+
Sbjct: 2854 KLLAQMEINDSTRAILLSSDGQNLVTGGDNGVVEVW 2889
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Homo sapiens (taxid: 9606) |
| >sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 255/811 (31%), Positives = 380/811 (46%), Gaps = 118/811 (14%)
Query: 156 EKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPH------------KLLKVR-- 201
+ T I P VV PG + +++ +L+F N +P+ + L R
Sbjct: 1693 QSACFSTTAKLIAPGVVVPGTLSVTANDLFFDA-NESDPNYKKQCAQVLRYCEALHARWN 1751
Query: 202 LAGIKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQG---------A 242
L I+ I RR+LLQ +E++ F + VK + L G +
Sbjct: 1752 LQEIRAIFLRRYLLQNTALELFLASRTAIMFAFDSEDAVKKVVYQLPRVGVGVKYGLPQS 1811
Query: 243 RDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFP 302
R T L P HSD M +WQ +SN+DYLM+LN++A R+ NDL+QYPVFP
Sbjct: 1812 RKTS----LMTPRQLFKHSD---MCAKWQKREISNFDYLMFLNTVAGRTFNDLSQYPVFP 1864
Query: 303 WVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERY---NEMPHPKFLYGSHYST 359
W+++NYT DTLDLS ++N+RDLSKPIGAL+ R + +RY ++ P F YG+HYST
Sbjct: 1865 WILTNYTSDTLDLSVASNFRDLSKPIGALSEARRKFFNDRYTSWDDDQVPAFHYGTHYST 1924
Query: 360 PGFVLFYLVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPE-FYD 416
P F L +L+R F + L +G+FDHPDR+ +SI D W + D KEL+PE FY
Sbjct: 1925 PAFTLNWLLRVEPFASMFINLHDGKFDHPDRITHSIKDSWDRCQRDSHDVKELIPELFYL 1984
Query: 417 TEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLW 476
E NS + G R DGT V V LPPWAE PE FV RQALESD+VS QL+ W
Sbjct: 1985 PE----MFRNSSKFNLGRRADGTPVDDVVLPPWAESPEHFVLMHRQALESDLVSCQLNQW 2040
Query: 477 IDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFH 536
IDLIFGYKQRG EA +A N+FY+L YEG+V M + Q A+E QI+ FGQ P Q+
Sbjct: 2041 IDLIFGYKQRGAEAVRATNVFYHLTYEGTVTPKMAETPGQVAAIEQQILSFGQTPSQLLT 2100
Query: 537 SPH-PRRTLTSQSSLL--KHS----TILSDVSNSWCDKSILEPLH--------------- 574
H PR ++ S + + +H ++ +SNS H
Sbjct: 2101 EAHPPRHSIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQPTVVGVAQNLV 2160
Query: 575 -----------FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER---SAVL 620
+ S + A++ EG + DA L + T R A
Sbjct: 2161 FSLNKWDNSYSYGASQRSALSMDPSNAEGQVSLPLTADAQLASAASTTPVARRHLGDAFD 2220
Query: 621 SSMTL--SSLCILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677
+T+ S+ D+ + G D I D + GR+ + GH D ++C+A E
Sbjct: 2221 QRLTVQCSNFVTTTDSKFIFACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSL 2280
Query: 678 ----RLISGSWDCTVRVWN----TGASWSHMKPSKSLVSQLDL----DNRIKCLAISKDN 725
+++GS DCTV +W+ TG + S + + I L +S ++
Sbjct: 2281 FSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEH 2340
Query: 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785
+ G E G ++I + + L+ + I V + S + C +LS ++ + Y
Sbjct: 2341 GLVVSGCEDGVILIHTTSSDLLRRIRGHGI---VTQLSMSRE-CILLSLFDSKRMVTYS- 2395
Query: 786 TTGMQVCNKVFEEKLLCLSWAGEEKVILGGALG-------MVYLVDLIQVQLLKQVRAHK 838
T ++ + ++K+ C++ + + + GA+ M L L Q L
Sbjct: 2396 ATAKKLDEVLVDDKIECVTVTRDGEFAVTGAVNGRINIWRMFPLTKLYTYQPLNSAVRSV 2455
Query: 839 DAVLSLHFDNCTMLVGCWDSCVVIYDVECGR 869
V S F +L G +V+++ + R
Sbjct: 2456 AVVASHRF----ILGGLDSGAIVVFNADFNR 2482
|
Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells. Caenorhabditis elegans (taxid: 6239) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 917 | ||||||
| 270007072 | 899 | hypothetical protein TcasGA2_TC013522 [T | 0.922 | 0.941 | 0.487 | 0.0 | |
| 350417345 | 896 | PREDICTED: protein FAN-like [Bombus impa | 0.925 | 0.947 | 0.489 | 0.0 | |
| 242024066 | 889 | protein FAN, putative [Pediculus humanus | 0.898 | 0.926 | 0.498 | 0.0 | |
| 340714331 | 896 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.925 | 0.947 | 0.489 | 0.0 | |
| 91082881 | 873 | PREDICTED: similar to neutral sphingomye | 0.911 | 0.957 | 0.485 | 0.0 | |
| 328788475 | 883 | PREDICTED: protein FAN-like [Apis mellif | 0.917 | 0.952 | 0.494 | 0.0 | |
| 332028457 | 891 | Protein FAN [Acromyrmex echinatior] | 0.919 | 0.946 | 0.492 | 0.0 | |
| 380025278 | 895 | PREDICTED: protein FAN [Apis florea] | 0.925 | 0.948 | 0.488 | 0.0 | |
| 328715141 | 876 | PREDICTED: protein FAN-like [Acyrthosiph | 0.890 | 0.932 | 0.512 | 0.0 | |
| 383863791 | 897 | PREDICTED: protein FAN [Megachile rotund | 0.928 | 0.948 | 0.488 | 0.0 |
| >gi|270007072|gb|EFA03520.1| hypothetical protein TcasGA2_TC013522 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/878 (48%), Positives = 601/878 (68%), Gaps = 32/878 (3%)
Query: 15 FSLLLLEPGEFYFDDLSVVLILTN--KKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKI 72
FSLLLL+PGE YF+D S VLI + K + +++ GRLK+CSKSLVFDPK++ P+IKI
Sbjct: 22 FSLLLLDPGEIYFEDFSAVLIPPDITPKTFDSKKQDGRLKMCSKSLVFDPKDIYKPIIKI 81
Query: 73 PLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEML----------------------ADV 110
PLK C + +++ N N+L V C YIEML A++
Sbjct: 82 PLKNCVVIEQWKGSAKYLTNNNVLTVNCREYIEMLEGNIVAPYKFREATNFLFQLNYANI 141
Query: 111 --CLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKIT 168
CL I QLHRA++LPAAEQ M+ATI +R ++VSF+ WL DLYEKV+LET +K+T
Sbjct: 142 MNCLPQICQLHRASTLPAAEQADMIATIVHSRHARVSFDPLWL-DLYEKVVLETEADKVT 200
Query: 169 PLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLE 228
PLVVNPGR++LS++ L+FQP+NN+E ++K+ L IKR+++RRFLL+ +G+EIY +
Sbjct: 201 PLVVNPGRLLLSTSRLFFQPYNNVESVPVIKIELNSIKRMVKRRFLLRHIGLEIYCSESS 260
Query: 229 PVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLA 288
++YL+ ++Q RD LY+ LL+ P L+L DQ++MTL+WQNG +SNYDYL Y+NSL
Sbjct: 261 SNPHIYLSFRSQQKRDHLYDNLLNQPVLKLEELDQDVMTLQWQNGIISNYDYLQYINSLG 320
Query: 289 DRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH 348
DR++NDLTQYP+FPW+ISNYT LD D NYRDLSKP+GALN RL RL ERY+EM H
Sbjct: 321 DRTINDLTQYPIFPWIISNYTDPELDFKDPKNYRDLSKPVGALNEVRLRRLLERYDEMSH 380
Query: 349 PKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFK 408
PKFLYGSHYSTPGFVLFYL R +P Y+LCLQ+GRFDHPDRMFNS+ D+++N TNMSDFK
Sbjct: 381 PKFLYGSHYSTPGFVLFYLARLYPHYVLCLQSGRFDHPDRMFNSVADVYKNCQTNMSDFK 440
Query: 409 ELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDI 468
EL+PEFYD Q+G+FL N+ GI+FGYR++G KV V+LPPWA+ P+ FV KLR ALESD+
Sbjct: 441 ELIPEFYDVSQEGNFLVNNMGINFGYRHNGLKVADVELPPWADSPQDFVRKLRDALESDV 500
Query: 469 VSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFG 528
VS+ LH WIDLIFG+KQ+G EA KA+NLFY+LCYEG+V+LD +QD NQRHALEVQIMEFG
Sbjct: 501 VSQGLHQWIDLIFGFKQQGEEAVKANNLFYHLCYEGNVDLDKIQDLNQRHALEVQIMEFG 560
Query: 529 QIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAI 588
QIPKQ+F PHP R + H L++ + W + + LE + ++HK ++ + I
Sbjct: 561 QIPKQVFKVPHPARKIGLPLLTEPHQVNLTETEDLWKNITSLEVVSTFNTHKNTVSHLFI 620
Query: 589 CGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVI 648
+G V SVG D+ LK+ SL+ RQ RSA + +M LSS +P+ +++G WD+ +++
Sbjct: 621 SDDGSRVTSVGHDSKLKVFSLEQSRQTRSANIGNMPLSSCIQMPNVNVLVIGSWDNQILL 680
Query: 649 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS 708
YD++ G++ + HEDAI+C+ W K L+SGS DCTV++W + +KP + L
Sbjct: 681 YDLDYGKVTESVLAHEDAITCMCWGRKSNILVSGSGDCTVKIWKGLNNNGIIKPIQCLQK 740
Query: 709 QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768
Q+D ++ + CL DN LAVGTE GE+ IW + + ++ + ++S+ + +S DG
Sbjct: 741 QIDHNSHVNCLDFDNDNEHLAVGTEDGEVYIWKTGDFTLYKKYTIH-SSSITAINYSPDG 799
Query: 769 CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828
++ N L + D+ TG+ V K + + CL W G ++LG G +++ D+++V
Sbjct: 800 LKLALGAKNKTLQIVDVGTGLPVFTKTLKSAISCLKWVG-FLLVLGCDDGSLFIWDIVEV 858
Query: 829 QLLKQVR-AHKDAVLSLHF--DNCTMLVGCWDSCVVIY 863
+LL +V AH A+ ++ ++ ++ G D + ++
Sbjct: 859 RLLYEVSGAHSGAIKTVDISPEHAIIVTGSEDRLIKVW 896
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350417345|ref|XP_003491377.1| PREDICTED: protein FAN-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/896 (48%), Positives = 605/896 (67%), Gaps = 47/896 (5%)
Query: 11 ENQIFSLLLLEPGEFYFDDLSVVL-ILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPL 69
E + F++LLL+ GE +F+D SV + ++ N +EE+ R GRLK CSKSLVF K++ PL
Sbjct: 2 EKERFTMLLLDSGEIFFEDYSVQMKLVDNSTSEEQTWRDGRLKFCSKSLVFVNKDINQPL 61
Query: 70 IKIPLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEMLA--------------------- 108
IKI LKE ++ + + + L NIL V C Y++ML
Sbjct: 62 IKIQLKETIAIDQCQS--NNDLANNILLVQCKQYVKMLEKNILAPYKFIHQNTTFHFYFN 119
Query: 109 ----DVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFG 164
D CL I QL RAA+LP AEQN M+ I +RQS+VSF+ SWL DLYE+V+LET
Sbjct: 120 YAKIDDCLPQILQLFRAATLPTAEQNAMIMAIVHSRQSRVSFDTSWLGDLYEQVVLETQA 179
Query: 165 NKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYF 224
NK+ PLV+NPGRI+L+++ +YFQP+NN++ H +LK++L I I +RRFLL Q+G+EI +
Sbjct: 180 NKVLPLVINPGRILLTTSRIYFQPYNNLDQHPVLKIQLNDIININKRRFLLSQIGLEIKW 239
Query: 225 --KDLEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLM 282
+ V++L+++LKTQ RD LY LL+ P + L Q+ MT+RWQNG+LSNYDYL+
Sbjct: 240 LRQPENKVEHLFISLKTQNDRDELYTNLLNQPTVSLERVPQDQMTMRWQNGSLSNYDYLL 299
Query: 283 YLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKER 342
Y+NSLADR+ +DLTQYPV PWV+ +YT TLDL+D + YRDLSKPIGAL P RLERLKER
Sbjct: 300 YINSLADRTFHDLTQYPVMPWVLQDYTSATLDLNDPSIYRDLSKPIGALEPNRLERLKER 359
Query: 343 YNEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLT 402
Y EM PKFLYGSHYS PGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNS+ D+W+NVL
Sbjct: 360 YLEMSEPKFLYGSHYSAPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSVADVWKNVLV 419
Query: 403 NMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQ 462
NMSDFKEL+PEFYDT GDFL NSYGI FGYR+DGTK+G VQLPPWA P FV LR
Sbjct: 420 NMSDFKELIPEFYDTNNGGDFLINSYGIDFGYRHDGTKIGDVQLPPWANGPAHFVQVLRN 479
Query: 463 ALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEV 522
ALESD VS+ LH WIDLIFGYKQRG+EAEKA+N+F+YLCYEG+VNLD ++D N RH LE+
Sbjct: 480 ALESDYVSQNLHHWIDLIFGYKQRGIEAEKANNVFFYLCYEGAVNLDTIKDINDRHGLEI 539
Query: 523 QIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCH----- 577
QIMEFGQIPKQIF PHP+R++ + L +T S S + ++ +E H
Sbjct: 540 QIMEFGQIPKQIFTLPHPKRSILTLHKLHIKTTSASVASETENKENPIEKTFELHELIMF 599
Query: 578 -SHKEAITAVAICG--EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI---- 630
SHKE+++++ I E + SVG+D MLK++S+K + R+ V S S C+
Sbjct: 600 QSHKESVSSIIIQNKEEINEIISVGQDGMLKLYSIKNKKLTRN-VSLSSLSLSSCVSYYT 658
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
++ G WD+ ++ YD+E GR++ L GHEDA+SC+A + RK +ISGSWDCT +V
Sbjct: 659 SSHRNILVAGSWDNSLIFYDIEFGRVIDILQGHEDAVSCLALSDSRKIIISGSWDCTAKV 718
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750
W + +S + +KP++ L++QLD D+++ C+ IS D L GTE GE+ +W+++ + + Q
Sbjct: 719 WKSYSSGTKIKPAECLIAQLDHDSKVTCINISGDETLLVSGTEDGEIFLWNMDTYHL-QF 777
Query: 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810
+ N +N ++F ++G ++SC + +LN+ D+ T Q+ E + L L+W +
Sbjct: 778 TAKAHNCKINAMVFDQEGKSIISCAEDKILNIIDIHTSTQIYRTTIEYEPLTLTWF-KSF 836
Query: 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCWDSCVVIYD 864
+++G + G + + + + Q+ H + LS+ +N +L G D ++++D
Sbjct: 837 LLIGDSNGNINVWNRQGAVFITQIHCHNGPINTLSVSTENNIVLTGGKDRKIIVWD 892
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242024066|ref|XP_002432451.1| protein FAN, putative [Pediculus humanus corporis] gi|212517884|gb|EEB19713.1| protein FAN, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/871 (49%), Positives = 596/871 (68%), Gaps = 47/871 (5%)
Query: 11 ENQIFSLLLLEPGEFYFDDLSVVLI--LTNKKNEEEERRPGRLKLCSKSLVFDPKNLALP 68
E FSLLLLEPGE YF+D S L N++N E R+ GR+KLCSKSLVFDP++ P
Sbjct: 2 EKTRFSLLLLEPGEIYFEDYSASLFPNQVNRENFETSRQLGRIKLCSKSLVFDPQDFNKP 61
Query: 69 LIKIPLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEML--------------------- 107
+IKIPL+ C + + + P S+ N++ + C+ Y+EML
Sbjct: 62 IIKIPLQNCIGIKRGKRPWASE-EDNVIQIECSNYVEMLEENVIAAYKFKQEKTLFLFLL 120
Query: 108 ----ADVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETF 163
D CL I QL+RA++LP EQ+ M+A I +RQS+VSF+ WLED+YEKVI ET
Sbjct: 121 NYAKVDDCLSHILQLYRASTLPPHEQSSMIAAIVYSRQSRVSFDAKWLEDIYEKVICETQ 180
Query: 164 GNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIY 223
NKI+PLVVNPGRIVL+ + +YFQP+NNIE H +LK+ L I RII RRFLL+QVGIEI+
Sbjct: 181 ANKISPLVVNPGRIVLTCSRIYFQPYNNIESHSVLKIDLKNITRIICRRFLLKQVGIEIF 240
Query: 224 FK--DLEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYL 281
+K + Y+ +K++ RD Y ++L P L L+ + EI+TL+WQN A+SNY+YL
Sbjct: 241 YKCCSKSETSHFYVAMKSKEVRDKFYESILQQPNLTLTSVEPEIITLKWQNRAISNYEYL 300
Query: 282 MYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKE 341
+YLNSLADRS NDLTQYPVFPWV+SNY TLDL DS +YRDL+KPIGALN RLERLKE
Sbjct: 301 LYLNSLADRSFNDLTQYPVFPWVLSNYISKTLDLKDSKSYRDLTKPIGALNEERLERLKE 360
Query: 342 RYNEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVL 401
R EMP PKFLYGSHYS PGFV+FYLVRK+P YMLCLQNGRFDHPDRMFNSI D+WRNV+
Sbjct: 361 RTLEMPEPKFLYGSHYSAPGFVIFYLVRKYPHYMLCLQNGRFDHPDRMFNSIADVWRNVI 420
Query: 402 TNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLR 461
NMSDFKEL+PEFYD Q GDFL N+YGI+FGYR +G+KV V LPPWAE P FV+KLR
Sbjct: 421 NNMSDFKELIPEFYDVSQSGDFLLNTYGINFGYRCNGSKVHDVSLPPWAENPADFVSKLR 480
Query: 462 QALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALE 521
+ALES+ VS +H WIDLIFGYKQRG EA+KA+N++YYLCYEG+V++D+V+D+N+RHALE
Sbjct: 481 EALESEYVSSNIHHWIDLIFGYKQRGEEAKKANNIYYYLCYEGAVDIDLVKDYNERHALE 540
Query: 522 VQIMEFGQIPKQIFHSPHPRR--TLTSQSSLLKHSTILSDVSNSWCDKSILEP-LHFCHS 578
VQIMEFGQ+PKQIF PHP R L QS + +++L + S+ +K I + L+ S
Sbjct: 541 VQIMEFGQVPKQIFKVPHPPRLPLLNPQSRI--GNSVLEETSSENTEKPIKDAILNLSRS 598
Query: 579 -----HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD 633
HK+ +T+VAI + S +D+ +++ + +T +Q RS L+++ +S +LPD
Sbjct: 599 TIIGYHKDVVTSVAISSNNKFILSSSKDSTIRMFAAETEKQIRSFNLNNVGISCCILLPD 658
Query: 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW-- 691
+ ++ G +D +++YD+ +++ + HED ++ + W + L+S S DCT+++W
Sbjct: 659 DNLIVAGTYDDQILVYDIMFNKLIDSIIAHEDTVTSICWGSVSRCLVSSSRDCTLKIWFN 718
Query: 692 -NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750
W +K + +L + DLD+RI C I+ DN+ + GTE GE+I+ + N +
Sbjct: 719 IYQDDKWHRLKITSAL--RFDLDSRITCSVINGDNSLIGSGTEDGEIIVIDVTNKNKVFK 776
Query: 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810
+ N V+G+ FS + +++SCG + VYDL TGM+V +K + +L CL+W G
Sbjct: 777 RTAH-NGPVHGISFSPENGKLVSCGWDGCFKVYDLLTGMEVYSKSLKAQLTCLAWNGLS- 834
Query: 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAV 841
++LG G+V+L DL++V+L+K++ + +
Sbjct: 835 LLLGSNSGIVFLWDLVEVKLIKEIECKGNNI 865
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340714331|ref|XP_003395683.1| PREDICTED: LOW QUALITY PROTEIN: protein FAN-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/896 (48%), Positives = 603/896 (67%), Gaps = 47/896 (5%)
Query: 11 ENQIFSLLLLEPGEFYFDDLSVVL-ILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPL 69
E + F++LLL+ GE +F+D SV + ++ N +EE+ R GRLK CSKSLVF K++ PL
Sbjct: 2 EKERFTMLLLDSGEIFFEDYSVQMKLVDNSTSEEQTWRDGRLKFCSKSLVFVNKDINQPL 61
Query: 70 IKIPLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEMLA--------------------- 108
IKI LKE ++ + + L NIL V C Y++ML
Sbjct: 62 IKIQLKETIAIDQCQS--NGDLANNILLVQCKQYVKMLEKNILAPYKFIHQNTTFHFYFN 119
Query: 109 ----DVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFG 164
D CL I QL RAA+LP AEQN M+ I +RQS+VSF+ SWL DLYE+V+LET
Sbjct: 120 YAKIDDCLPQILQLFRAATLPTAEQNAMIMAIVHSRQSRVSFDTSWLGDLYEQVVLETQA 179
Query: 165 NKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYF 224
NK+ PLV+NPGRI+L+++ +YFQP+NN++ H +LK++L I I +RRFLL Q+G+EI +
Sbjct: 180 NKVLPLVINPGRILLTTSRIYFQPYNNLDQHPVLKIQLNDIININKRRFLLSQIGLEIKW 239
Query: 225 --KDLEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLM 282
+ V++L+++LKTQ RD LY LL+ P + L Q+ MT+RWQNG+LSNYDYL+
Sbjct: 240 LRQPENKVEHLFISLKTQNERDELYTNLLNQPTVSLERVPQDQMTMRWQNGSLSNYDYLL 299
Query: 283 YLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKER 342
Y+NSLADR+ +DLTQYPV PWV+ +YT TLDL+D + YRDLSKPIGAL P RLERLKER
Sbjct: 300 YINSLADRTFHDLTQYPVMPWVLQDYTSATLDLNDPSIYRDLSKPIGALEPNRLERLKER 359
Query: 343 YNEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLT 402
Y EM PKFLYGSHYS PGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNS+ D+W+NVL
Sbjct: 360 YLEMSEPKFLYGSHYSAPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSVADVWKNVLV 419
Query: 403 NMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQ 462
NMSDFKEL+PEFYDT GDFL NSYGI FGYR+DGTK+G VQLPPWA+ P FV LR
Sbjct: 420 NMSDFKELIPEFYDTNNGGDFLINSYGIDFGYRHDGTKIGDVQLPPWADGPAHFVQVLRS 479
Query: 463 ALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEV 522
ALESD VS+ LH WIDLIFGYKQRG+EAEKA+N+F+YLCYEG+VNLD ++D N RH LE+
Sbjct: 480 ALESDYVSQNLHHWIDLIFGYKQRGIEAEKANNVFFYLCYEGAVNLDTIKDINDRHGLEI 539
Query: 523 QIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCH----- 577
QIMEFGQIPKQIF PHP+R++ + L + S S + ++ +E H
Sbjct: 540 QIMEFGQIPKQIFTLPHPKRSILTLDKLHIKTISASVASETENKENPIEKTFELHELIMF 599
Query: 578 -SHKEAITAVAICG--EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI---- 630
SHKE+++++ I E V SVG+D MLK++S+ + R+ V S S C+
Sbjct: 600 QSHKESVSSIIIQNKEEINEVISVGQDGMLKLYSIXNKKLTRN-VSLSSLPLSSCVSYYT 658
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
++ G WD+ ++ YD+E GRI+ L GHEDA+SC+A + RK +ISGSWDCT +V
Sbjct: 659 SSHRNILVAGSWDNSLIFYDIEFGRIIDILQGHEDAVSCLALSDSRKIIISGSWDCTAKV 718
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750
W + +S + +KP++ L++QLD D+++ C+ IS D L GTE GE+ +W+++ + + Q
Sbjct: 719 WKSYSSGTKIKPAECLIAQLDHDSKVTCINISGDETLLVSGTEDGEIFLWNMDTYHL-QF 777
Query: 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810
+ N +N ++F ++G ++SC + +LN+ D+ T Q+ E + L L+W +
Sbjct: 778 TAKAHNCKINAMVFDQEGKSIISCAEDKILNIIDIHTSTQIYRTTIEYEPLTLTWF-KSF 836
Query: 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCWDSCVVIYD 864
+++G + G + + + + Q+ H + LS+ +N +L G D ++++D
Sbjct: 837 LLIGDSNGNINVWNRQGAVFITQIHCHNGPINTLSVSTENNIVLTGGKDRKIIVWD 892
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91082881|ref|XP_971631.1| PREDICTED: similar to neutral sphingomyelinase (n-smase) activation associated factor fan [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/878 (48%), Positives = 598/878 (68%), Gaps = 42/878 (4%)
Query: 15 FSLLLLEPGEFYFDDLSVVLILTN--KKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKI 72
FSLLLL+PGE YF+D S VLI + K + +++ GRLK+CSKSLVFDPK++ P+IKI
Sbjct: 6 FSLLLLDPGEIYFEDFSAVLIPPDITPKTFDSKKQDGRLKMCSKSLVFDPKDIYKPIIKI 65
Query: 73 PLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEML----------------------ADV 110
PLK C + +++ N N+L V C YIEML A++
Sbjct: 66 PLKNCVVIEQWKGSAKYLTNNNVLTVNCREYIEMLEGNIVAPYKFREATNFLFQLNYANI 125
Query: 111 --CLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKIT 168
CL I QLHRA++LPAAEQ M+ATI +R ++VSF+ WL DLYEKV+LET +K+T
Sbjct: 126 MNCLPQICQLHRASTLPAAEQADMIATIVHSRHARVSFDPLWL-DLYEKVVLETEADKVT 184
Query: 169 PLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLE 228
PLVVNPGR++LS++ L+FQP+NN+E ++K+ L IKR+++RRFLL+ +G+EIY +
Sbjct: 185 PLVVNPGRLLLSTSRLFFQPYNNVESVPVIKIELNSIKRMVKRRFLLRHIGLEIYCSESS 244
Query: 229 PVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLA 288
++YL+ ++Q RD LY+ LL+ P L+L DQ++MTL+WQNG +SNYDYL Y+NSL
Sbjct: 245 SNPHIYLSFRSQQKRDHLYDNLLNQPVLKLEELDQDVMTLQWQNGIISNYDYLQYINSLG 304
Query: 289 DRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH 348
DR++NDLTQYP+FPW+ISNYT LD D NYRDLSKP+GALN RL RL ERY+EM H
Sbjct: 305 DRTINDLTQYPIFPWIISNYTDPELDFKDPKNYRDLSKPVGALNEVRLRRLLERYDEMSH 364
Query: 349 PKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFK 408
PKFLYGSHYSTPGFVLFYL R +P Y+LCLQ+GRFDHPDRMFNS+ D+++N TNMSDFK
Sbjct: 365 PKFLYGSHYSTPGFVLFYLARLYPHYVLCLQSGRFDHPDRMFNSVADVYKNCQTNMSDFK 424
Query: 409 ELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDI 468
EL+PEFYD Q+G+FL N+ GI+FGYR++G KV V+LPPWA+ P+ FV KLR ALESD+
Sbjct: 425 ELIPEFYDVSQEGNFLVNNMGINFGYRHNGLKVADVELPPWADSPQDFVRKLRDALESDV 484
Query: 469 VSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFG 528
VS+ LH WIDLIFG+KQ+G EA KA+NLFY+LCYEG+V+LD +QD NQRHALEVQIMEFG
Sbjct: 485 VSQGLHQWIDLIFGFKQQGEEAVKANNLFYHLCYEGNVDLDKIQDLNQRHALEVQIMEFG 544
Query: 529 QIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAI 588
QIPKQ+F PHP R + H L++ + W + + LE + ++HK ++ + I
Sbjct: 545 QIPKQVFKVPHPARKIGLPLLTEPHQVNLTETEDLWKNITSLEVVSTFNTHKNTVSHLFI 604
Query: 589 CGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVI 648
+G V SVG D+ LK+ SL+ RQ RSA + +M LSS +P+ +++G WD+ +++
Sbjct: 605 SDDGSRVTSVGHDSKLKVFSLEQSRQTRSANIGNMPLSSCIQMPNVNVLVIGSWDNQILL 664
Query: 649 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS 708
YD++ G++ + HEDAI+C+ W K L+SGS DCTV++W + +KP + L
Sbjct: 665 YDLDYGKVTESVLAHEDAITCMCWGRKSNILVSGSGDCTVKIWKGLNNNGIIKPIQCLQK 724
Query: 709 QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768
Q+D ++ + CL DN LAVGTE GE+ IW + + ++ + ++S+ + +S DG
Sbjct: 725 QIDHNSHVNCLDFDNDNEHLAVGTEDGEVYIWKTGDFTLYKKYTIH-SSSITAINYSPDG 783
Query: 769 CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828
++ D+ TG+ V K + + CL W G ++LG G +++ D+++V
Sbjct: 784 LKL----------ALDVGTGLPVFTKTLKSAISCLKWVG-FLLVLGCDDGSLFIWDIVEV 832
Query: 829 QLLKQVR-AHKDAVLSLHF--DNCTMLVGCWDSCVVIY 863
+LL +V AH A+ ++ ++ ++ G D + ++
Sbjct: 833 RLLYEVSGAHSGAIKTVDISPEHAIIVTGSEDRLIKVW 870
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328788475|ref|XP_001120591.2| PREDICTED: protein FAN-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/886 (49%), Positives = 594/886 (67%), Gaps = 45/886 (5%)
Query: 17 LLLLEPGEFYFDDLSVVL-ILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKIPLK 75
+LLLEPGE +F+D SV + + N +EE+ + GRLKLCSKSLVF K++ PLIKI LK
Sbjct: 1 MLLLEPGEIFFEDYSVQMKLFDNSTSEEQNWKDGRLKLCSKSLVFVNKDINQPLIKIQLK 60
Query: 76 ECTSLSKFEPPLTSKLNGNILDVTCTAYIEMLA-------------------------DV 110
E ++ + + GNIL V C Y++ML D
Sbjct: 61 ETLTIDQCQSNNDIAKCGNILLVQCKQYVKMLEKNILAPYKFIHQNATFHFFFNYAKIDD 120
Query: 111 CLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKITPL 170
L I QL RAA+LP AEQN M+ I +RQS+VSF+ SWLEDLYE+V+LE NK+ PL
Sbjct: 121 YLPHILQLFRAATLPTAEQNAMIMAIVHSRQSRVSFDTSWLEDLYEQVVLEIQANKVLPL 180
Query: 171 VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYF--KDLE 228
V+NPGRI+L+++ +YFQP+NN++ H +LK++L I I +RRFLL Q+G+EI + +
Sbjct: 181 VINPGRILLTTSRIYFQPYNNLDQHPVLKIQLKDIININKRRFLLSQIGLEIKWLRQPEN 240
Query: 229 PVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLA 288
++L+++LK Q RD LY +LL+ P + L Q+ MT+RWQNG+LSNYDYL+Y+NSLA
Sbjct: 241 KAEHLFISLKNQNDRDELYTSLLNQPTISLERVPQDQMTMRWQNGSLSNYDYLLYINSLA 300
Query: 289 DRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH 348
DR+ +DLTQYPV PWV+ +YT TLDL D YRDLSKPIGAL RLERLKERY EM
Sbjct: 301 DRTFHDLTQYPVMPWVLQDYTSTTLDLKDPRIYRDLSKPIGALESNRLERLKERYLEMSE 360
Query: 349 PKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFK 408
PKFLYGSHYS PGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNS+ D+W+NVL NMSDFK
Sbjct: 361 PKFLYGSHYSAPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSVADVWKNVLVNMSDFK 420
Query: 409 ELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDI 468
EL+PEFYD GDFL NSYGI FGYRYDGTK+G VQLPPWA P FV LR ALE+D
Sbjct: 421 ELIPEFYDINNGGDFLINSYGIDFGYRYDGTKIGDVQLPPWANGPAHFVQILRNALENDY 480
Query: 469 VSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFG 528
VS+ LH WIDLIFGYKQRG+EAEKA+N+F++LCYEG+V+LD ++D N RH LE+QIMEFG
Sbjct: 481 VSQNLHHWIDLIFGYKQRGIEAEKANNVFFHLCYEGAVDLDTIRDINDRHGLEIQIMEFG 540
Query: 529 QIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILE--PLHFCHSHKEAITAV 586
QIPKQIF PHP+R++ L +S + N +K I E L SHKE+++++
Sbjct: 541 QIPKQIFTLPHPKRSMFILDKLYTEIDSIS-IKN---EKEIFELYELIMFQSHKESVSSI 596
Query: 587 AICG--EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI----LPDNCTMLVG 640
I E V SVG+D MLK++S+K + R+ LSS+ LSS CI ++ G
Sbjct: 597 IITNKEEINEVISVGQDGMLKLYSIKNKKLTRNVPLSSLPLSS-CISYYTSSHRNILVAG 655
Query: 641 CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700
WD+ ++ YD+E GRI+ L GHEDA+SC+A R+ +ISGSWDCT +VW + +S + +
Sbjct: 656 SWDNTLIFYDIEFGRIIDVLQGHEDAVSCLALSTTRQVIISGSWDCTAKVWQSYSSGTKI 715
Query: 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVN 760
KP++ L++QLD D+++ C+ IS D L GTE GE+ +W+++ + + Q N +N
Sbjct: 716 KPAECLIAQLDHDSKVTCINISGDETLLISGTEDGEIFLWNMDTYNL-QFTVKAHNCKIN 774
Query: 761 GVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMV 820
++F ++G ++SC + MLN+ D+ T Q+ E + L L+W + +++G G +
Sbjct: 775 AMVFDQEGKSIISCAKDKMLNIIDIYTSTQIYRITLEYEPLTLTWF-KTFLLIGDNNGNI 833
Query: 821 YLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCWDSCVVIYD 864
+ + + Q+ H + LS+ +N +L G D +++++
Sbjct: 834 NVWNRQGAIFITQIHCHDGPINTLSVSTENNIILTGGKDKKIIVWN 879
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332028457|gb|EGI68500.1| Protein FAN [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/891 (49%), Positives = 609/891 (68%), Gaps = 48/891 (5%)
Query: 15 FSLLLLEPGEFYFDDLSVVLI-LTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKIP 73
F++LLLEPGE +F+D SV + L + +++ + GRLKLCSKSLVF K++ PLIK+
Sbjct: 2 FTMLLLEPGEIFFEDYSVQMKKLDTQFSKDNKWMEGRLKLCSKSLVFVNKDINQPLIKLQ 61
Query: 74 LKECTSLSKFEPPLTSKLNGNILDVTCTAYIEML-------------------------A 108
LKE TS+ + L++ + NIL + C ++EML
Sbjct: 62 LKETTSIE--QCTLSNDIVSNILSIDCKQHVEMLEKNILAPYRFIHQNTIFHFCFNYAKV 119
Query: 109 DVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKIT 168
+ CL I QLHRAASL EQN M+ I +RQS+VSF+ SWLEDLYE+VILET NK+
Sbjct: 120 EDCLSQILQLHRAASLVTIEQNAMIMAIVHSRQSRVSFDTSWLEDLYEQVILETQANKVL 179
Query: 169 PLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYF--KD 226
PLV+NPGR++L+++ +YFQP+NN++ H +LK++L I+ +I+RRFLL+QVG+EI + +
Sbjct: 180 PLVINPGRVLLTNSRIYFQPYNNMDQHPVLKIQLKDIRNVIKRRFLLRQVGLEIKWIRQT 239
Query: 227 LEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNS 286
+K+L+L+ + Q RD LY LL + L Q MT+RWQNG+LSNYDY++Y+NS
Sbjct: 240 DSKIKHLFLSFQNQDGRDKLYENLLKQSAVSLETVPQNQMTMRWQNGSLSNYDYILYVNS 299
Query: 287 LADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEM 346
LADR+ +DLTQYPVFPW+I +YT L+L+D N YRDLSKPIGALNP RLERLKERY+EM
Sbjct: 300 LADRTFHDLTQYPVFPWIIQDYTSSMLNLNDVNVYRDLSKPIGALNPIRLERLKERYSEM 359
Query: 347 PHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSD 406
PKFLYGSHYS PGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNSI D+W+NVL NMSD
Sbjct: 360 SDPKFLYGSHYSAPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSIADVWKNVLVNMSD 419
Query: 407 FKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALES 466
FKEL+PEFYDT GDFL N+YGI FGYR+DGTK+G VQLPPWA+ P FV +LR ALES
Sbjct: 420 FKELIPEFYDTNNDGDFLMNNYGIDFGYRHDGTKIGDVQLPPWAKGPADFVQQLRNALES 479
Query: 467 DIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIME 526
D +S+ LH WIDLIFGYKQRGVEA+KADN+F++LCYEG+V+LD ++D N RH LEVQIME
Sbjct: 480 DYISQNLHHWIDLIFGYKQRGVEADKADNVFFHLCYEGAVDLDTIRDINDRHGLEVQIME 539
Query: 527 FGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSD----VSNSWC--DKSI--LEPLHFCHS 578
FGQIPKQ+F PHP+R LT +LL T+L+ S+S C KSI +E + F +
Sbjct: 540 FGQIPKQVFTLPHPKR-LTLAPNLLYSETLLTSPDTITSDSACVNKKSINFIELVMF-QA 597
Query: 579 HKEAITAVAICGEGIS-VASVGRDAMLKIHSLKTGRQERSAVLSSMTLS---SLCILPDN 634
HK+ +T++ + + + SVG+D LK++++ + RS LSS++LS S C L
Sbjct: 598 HKDCVTSIVRKNKTSNEIISVGQDGTLKLYNISEKKLTRSVTLSSLSLSSCISYCTLSQR 657
Query: 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694
++ G WD+ ++ YD+E GR++ L GHEDA+SC+AW + +ISGSWDCT ++W+
Sbjct: 658 NILVAGSWDNTLIFYDIEFGRVIDVLQGHEDAVSCLAWSSTHRVIISGSWDCTAKIWHEY 717
Query: 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754
S S +KP++ ++QLD D+++ C+ IS+D+ L GTE GEL +WS+ ++ + +
Sbjct: 718 TSGSKIKPTECFIAQLDHDSKVTCINISRDDTMLVSGTEDGELCLWSMNSYNLQSTIKGH 777
Query: 755 INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILG 814
+N V+F + V+SC + +LN+ D+ T Q+ + E + L L W G +++G
Sbjct: 778 -TCRINAVIFDKQCSSVISCAEDKVLNIIDVRTSTQIYSVSLESEPLTLIWMG-IFLLIG 835
Query: 815 GALGMVYLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCWDSCVVIY 863
G + + + + + Q+ H + L++ D+ ++ G D V+++
Sbjct: 836 DNDGNLNIWNHQEAVFIPQIHCHDGPLCALAVTADSNLIITGGKDRKVIVW 886
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380025278|ref|XP_003696404.1| PREDICTED: protein FAN [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/894 (48%), Positives = 593/894 (66%), Gaps = 45/894 (5%)
Query: 9 RSENQIFSLLLLEPGEFYFDDLSVVL-ILTNKKNEEEERRPGRLKLCSKSLVFDPKNLAL 67
+S +F++LLLEPGE +F+D SV + + N +EE+ + GRLKLCSKSLVF K++
Sbjct: 5 KSTGLLFTMLLLEPGEIFFEDYSVQMKLFDNSTSEEQNWKDGRLKLCSKSLVFVNKDINQ 64
Query: 68 PLIKIPLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEMLA------------------- 108
PLIKI LKE ++ + + GNIL V C Y++ML
Sbjct: 65 PLIKIQLKETLTIDQCQSNNDIAKCGNILLVQCKQYVKMLEKNILAPYKFIHQNATFHFF 124
Query: 109 ------DVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILET 162
D L I QL RAA+LP AEQN M+ I +RQS+VSF+ SWLEDLYE+V+LE
Sbjct: 125 FNYAKIDDYLPHILQLFRAATLPTAEQNAMIMAIVHSRQSRVSFDTSWLEDLYEQVVLEI 184
Query: 163 FGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEI 222
NK+ PLV+NPGRI+L+++ +YFQP+NN++ H +LK++L I I +RRFLL Q+G+EI
Sbjct: 185 QANKVLPLVINPGRILLTTSRIYFQPYNNLDQHPVLKIQLKDIININKRRFLLSQIGLEI 244
Query: 223 YF--KDLEPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDY 280
+ + ++L+++LK Q RD LY LL+ P + L Q+ MT+RWQNG+LSNYDY
Sbjct: 245 KWLRQPENKAEHLFISLKNQNDRDELYTNLLNQPAISLERVPQDQMTMRWQNGSLSNYDY 304
Query: 281 LMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLK 340
L+Y+NSLADR+ +DLTQYPV PWV+ +YT TLDL D YRDLSKPIGAL RLERLK
Sbjct: 305 LLYINSLADRTFHDLTQYPVMPWVLQDYTSTTLDLKDPRIYRDLSKPIGALESNRLERLK 364
Query: 341 ERYNEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNV 400
ERY EM PKFLYGSHYS PGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNS+ D+W+NV
Sbjct: 365 ERYLEMSEPKFLYGSHYSAPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSVADVWKNV 424
Query: 401 LTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKL 460
L NMSDFKEL+PEFYD GDFL NSYGI FGYRYDGTK+G VQLPPWA P FV L
Sbjct: 425 LVNMSDFKELIPEFYDVNNGGDFLVNSYGIDFGYRYDGTKIGDVQLPPWANGPAHFVQIL 484
Query: 461 RQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHAL 520
R ALE+D VS+ LH WIDLIFGYKQRG+EAEKA+N+F++LCYEG+V+LD ++D N RH L
Sbjct: 485 RNALENDYVSQNLHHWIDLIFGYKQRGIEAEKANNVFFHLCYEGAVDLDTIRDINDRHGL 544
Query: 521 EVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILE--PLHFCHS 578
E+QIMEFGQIPKQIF PHP+R++ L +S V N K I E L S
Sbjct: 545 EIQIMEFGQIPKQIFTLPHPKRSMFILDKLYSEIDSIS-VKNG---KEIFELHELIMFQS 600
Query: 579 HKEAITAVAICG--EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI----LP 632
HKE+++++ I E + SVG+D MLK++S+K + R+ V S S CI
Sbjct: 601 HKESVSSIIITNREEMNEIISVGQDGMLKLYSIKNKKLTRN-VSLSSLPLSSCISYYTSS 659
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
++ G WD+ ++ YD+E GRI+ L GHEDA+SC+A R+ +ISGSWDCT +VW
Sbjct: 660 HRNILVAGSWDNTLIFYDIEFGRIIDVLQGHEDAVSCLALSTTRQIIISGSWDCTAKVWQ 719
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ +S + +KP++ L++QLD D+++ C+ IS D L GTE GE+ +W+++ + + Q
Sbjct: 720 SYSSGTKIKPAECLIAQLDHDSKVTCINISGDETLLISGTEDGEIFLWNMDTYNL-QFTV 778
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812
N +N ++F ++G ++SC + MLN+ D+ T Q+ E + L L+W + ++
Sbjct: 779 KAHNYKINAMVFDQEGKSIISCAEDKMLNIIDIYTSTQIYRTTIEYEPLTLTWF-KTFLL 837
Query: 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCWDSCVVIYD 864
+G G + + + + Q+ H + LS+ +N +L G D +++++
Sbjct: 838 IGDNNGNINVWNRQGAIFITQIHCHDGPINTLSVSTENNIILTGGKDKKIIVWN 891
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328715141|ref|XP_001944145.2| PREDICTED: protein FAN-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/864 (51%), Positives = 579/864 (67%), Gaps = 47/864 (5%)
Query: 15 FSLLLLEPGEFYFDDLSVVLILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKIPL 74
FSLLLLEPGE+YF+D L +T E + GRLK+CS SLVFDPK+ P++KIP
Sbjct: 7 FSLLLLEPGEYYFEDYIASLAVT----ENDTWLSGRLKVCSLSLVFDPKDYHKPILKIPF 62
Query: 75 KECTSLSKFEPPLTSKLNGNILDVTCTAYIEML-------------------------AD 109
+C S++K +S + NIL++ YIEML +
Sbjct: 63 TQCGSITK-----SSDKDSNILNIISKQYIEMLDHNVLEPYKFVNELSLFRIDLKYARVE 117
Query: 110 VCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKITP 169
CL I QLHRA+SL AE M A IA RQ+ ++F+ +WLE L E +I+E G KITP
Sbjct: 118 NCLSLILQLHRASSLQTAEHRHMAAAIAFGRQTLITFDPTWLE-LGENIIIEEVGQKITP 176
Query: 170 LVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEP 229
L +N GRIVL+S ++YFQPFNN E LK++L+ IKRII+RRFLLQQVG+E + EP
Sbjct: 177 LSINSGRIVLTSLHVYFQPFNNNETTLYLKIKLSEIKRIIKRRFLLQQVGLEFEY---EP 233
Query: 230 VKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLAD 289
K LYLT K RD LY+ LL+ ++++ ++ IMTL+WQNGALSNYDYL+YLNSLAD
Sbjct: 234 NKQLYLTFKNTEIRDNLYDNLLNQSKVKMEKRERCIMTLKWQNGALSNYDYLLYLNSLAD 293
Query: 290 RSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPHP 349
R++NDLTQYPVFPWV+++Y+ TLDL++SN +RDL+KPIGALNP RL +L++RYNEM P
Sbjct: 294 RTVNDLTQYPVFPWVVADYSSPTLDLTNSNTFRDLTKPIGALNPERLLKLQDRYNEMNAP 353
Query: 350 KFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKE 409
KFLYGSHYSTPGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNSI D WRNVL NMSDFKE
Sbjct: 354 KFLYGSHYSTPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSISDAWRNVLNNMSDFKE 413
Query: 410 LVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIV 469
LVPEFYDT+Q GDFL N Y I FG R+DG KVG V+LP WA P ++KLRQALESD V
Sbjct: 414 LVPEFYDTDQCGDFLTNKYAIDFGTRHDGRKVGDVELPQWANSPVDVISKLRQALESDYV 473
Query: 470 SRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQ 529
S LH WIDLIFGYKQ G EA KA+N+FYYLCYEG+V+L+ V+DWNQRHALEVQIMEFGQ
Sbjct: 474 SNHLHHWIDLIFGYKQNGTEAIKANNVFYYLCYEGAVDLNNVRDWNQRHALEVQIMEFGQ 533
Query: 530 IPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSI-LEPLHFCHSHKEAITAVAI 588
IPKQIF PHP +T K IL ++ W K++ + L H++ T+V
Sbjct: 534 IPKQIFEKPHPPKTCLLIKDFQKFG-ILPNIEQYWNWKNLNVLKLFTTTIHRDIATSVKF 592
Query: 589 CGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLS-SLCILPDN--CTMLVGCWDSC 645
+ +V SVG DAMLK+H + T +Q RS ++ + + ILP N T L+
Sbjct: 593 SEDMQTVWSVGYDAMLKVHCILTQKQIRSVIVQGFPVKFNDIILPSNYTSTALIATMHGS 652
Query: 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT-GASWSHMKPSK 704
+++YD++C RI + HED+ISC+AW K LI+GS DCT R+W A W+ ++
Sbjct: 653 LIVYDIDCCRITDDFRAHEDSISCLAW-SKNGFLITGSLDCTARIWKAPQAPWTKIELIT 711
Query: 705 SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLF 764
SL ++L+ +N++ LA+S DN LA GT GE+ +WS ++ QQL + SVN + F
Sbjct: 712 SLKAELEHENKVTSLALSIDNKLLATGTNVGEIFLWSFFDYSFIQQLPGHAD-SVNKMSF 770
Query: 765 SEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVD 824
S D ++LSC ++C V+D +G+++ + L L+W G V +GG G++YL D
Sbjct: 771 SRDCSKLLSCSDDCCFKVFDSDSGLELYTNTLQCPLKTLAWDGYH-VFVGGENGILYLWD 829
Query: 825 LIQVQLLKQVRAHKDAVLSLHFDN 848
L + +L+ +++ H +L + N
Sbjct: 830 LEKFELINKIQTHPGGLLDMDVSN 853
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863791|ref|XP_003707363.1| PREDICTED: protein FAN [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/895 (48%), Positives = 605/895 (67%), Gaps = 44/895 (4%)
Query: 11 ENQIFSLLLLEPGEFYFDDLSVVL-ILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPL 69
E + F++LLLEPGE +F+D SV + L + +E E+ GRLKLCSKSLVF K++ PL
Sbjct: 2 EKERFTMLLLEPGEIFFEDYSVQMKTLDSSSSEGEKWIDGRLKLCSKSLVFVNKDINQPL 61
Query: 70 IKIPLKECTSLSKFEPPLTSKLNGNILDVTCTAYIEML---------------------- 107
IKI LKE + + + GN L V C Y+EML
Sbjct: 62 IKIQLKETIGIEQCKSNSVIAKYGNTLLVQCKQYVEMLEKNIPAPYKFIHENATFYFYFN 121
Query: 108 ---ADVCLVSIEQLHRAASLPAAEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFG 164
D CL + QL RA +LP AEQN M+ I +RQS+VSF+ SWLEDLYE+V+LE
Sbjct: 122 YAKVDDCLPQMLQLIRATTLPTAEQNAMIMAIVHSRQSRVSFDTSWLEDLYEQVVLEIQA 181
Query: 165 NKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEI-Y 223
NK+ PLV+NPGRI+L+++ +YFQP+NN++ H +LK++L I II+RRFLL+Q+G+EI +
Sbjct: 182 NKVLPLVINPGRILLTTSRIYFQPYNNLDQHPVLKIQLKDINNIIKRRFLLRQIGLEIKW 241
Query: 224 FKDLE-PVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLM 282
K E V++L+++LK+ RD LY +LL+ + L Q+ MT+RWQNG+LSNYDYL+
Sbjct: 242 LKQPENKVEHLFISLKSPNDRDVLYTSLLNQSAVSLERVPQDQMTMRWQNGSLSNYDYLL 301
Query: 283 YLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKER 342
Y+NSLADR+ +DLTQYPV PWVI +Y TLDLSD++ YRDLSKPIGAL RLERLKER
Sbjct: 302 YINSLADRTFHDLTQYPVMPWVIQDYVSCTLDLSDTSIYRDLSKPIGALEENRLERLKER 361
Query: 343 YNEMPHPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLT 402
Y EM PKFLYGSHYS PGFVLFYLVRK+PQYMLCLQNGRFDHPDRMFNS+ D+W+NVL
Sbjct: 362 YLEMSEPKFLYGSHYSAPGFVLFYLVRKYPQYMLCLQNGRFDHPDRMFNSVADVWKNVLV 421
Query: 403 NMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQ 462
NMSDFKEL+PEFYDT GDFL NSYGI FGYR+DGTK+G VQLPPWA P F+ LR
Sbjct: 422 NMSDFKELIPEFYDTNNGGDFLVNSYGIDFGYRHDGTKIGDVQLPPWANGPAHFIQVLRN 481
Query: 463 ALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEV 522
ALESD VS+ LH WIDLIFGYKQRG+EAEKA+N+F++LCYEG+V+LD ++D N RH LE+
Sbjct: 482 ALESDYVSQNLHCWIDLIFGYKQRGIEAEKANNVFFHLCYEGAVDLDTIRDVNDRHGLEI 541
Query: 523 QIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFC-----H 577
QIMEFGQIPKQ+F PHP+R+++ + + S + + + I + C
Sbjct: 542 QIMEFGQIPKQVFTLPHPKRSVSILDKFHAETVLTSIKNETENENLITKTFELCELMTFQ 601
Query: 578 SHKEAITAVA-ICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC 635
SHK++I ++A I E I V SVG+D MLK++S+K + RS LSS+ LSS +
Sbjct: 602 SHKDSINSIAVIIKEEIDEVISVGQDGMLKLYSIKNKKLRRSVSLSSLPLSSCVSYYTSL 661
Query: 636 ---TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
++ G WD+ ++ YD+E GR++ L GH+DAISC+A R+ +ISGSWDCTV++W
Sbjct: 662 HRNVLVAGSWDNSLIFYDIEFGRVIDILPGHDDAISCLALSPSRQIIISGSWDCTVKLWQ 721
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ S + +KP+K L++QLD D+++ C+ IS+D L GT+ GE+ +W+++ + + QL+
Sbjct: 722 SYISGTKIKPAKCLIAQLDHDSKVTCINISRDETLLVSGTDDGEIFLWNMDTYNL--QLT 779
Query: 753 DDINA-SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811
+ +N ++F ++G ++SC + LN+ D+ T ++ + E +LL LSW E +
Sbjct: 780 VKAHTCKINAMVFDQEGKSIISCAQDKALNIIDVCTSTRIYHTTLEHELLTLSWF-ETLL 838
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCWDSCVVIYD 864
++G G + + + + ++R H + L + +N ++ G D ++I++
Sbjct: 839 LIGDNNGNINVWNQQGGIFIAKIRCHDGPINALLVSTENNIIVTGGKDKKIIIWN 893
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 917 | ||||||
| UNIPROTKB|Q92636 | 917 | NSMAF "Protein FAN" [Homo sapi | 0.806 | 0.806 | 0.401 | 6.6e-162 | |
| RGD|727868 | 920 | Nsmaf "neutral sphingomyelinas | 0.484 | 0.482 | 0.482 | 1.8e-160 | |
| ZFIN|ZDB-GENE-050417-342 | 911 | nsmaf "neutral sphingomyelinas | 0.799 | 0.804 | 0.392 | 1.5e-151 | |
| MGI|MGI:1341864 | 920 | Nsmaf "neutral sphingomyelinas | 0.620 | 0.618 | 0.414 | 3.5e-135 | |
| UNIPROTKB|P50851 | 2863 | LRBA "Lipopolysaccharide-respo | 0.371 | 0.119 | 0.482 | 1.5e-92 | |
| MGI|MGI:1933162 | 2856 | Lrba "LPS-responsive beige-lik | 0.371 | 0.119 | 0.476 | 1e-91 | |
| UNIPROTKB|E1BND6 | 2786 | Bt.111067 "Uncharacterized pro | 0.371 | 0.122 | 0.476 | 2.3e-91 | |
| RGD|1311428 | 2709 | Lrba "LPS-responsive vesicle t | 0.371 | 0.125 | 0.474 | 2.7e-91 | |
| FB|FBgn0086911 | 3578 | rg "rugose" [Drosophila melano | 0.381 | 0.097 | 0.460 | 7.3e-89 | |
| MGI|MGI:1347075 | 2936 | Nbea "neurobeachin" [Mus muscu | 0.379 | 0.118 | 0.465 | 1.5e-87 |
| UNIPROTKB|Q92636 NSMAF "Protein FAN" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 6.6e-162, Sum P(2) = 6.6e-162
Identities = 311/775 (40%), Positives = 460/775 (59%)
Query: 117 QLHRAASLPA-AEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKITPLVVNPG 175
QLHRA+ L +Q M+ I +R ++ SF+ + +++ EK+ +E +TPLV NPG
Sbjct: 152 QLHRASCLDKLGDQTAMITAILQSRLARTSFDKNRFQNISEKLHMECKAEMVTPLVTNPG 211
Query: 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYL 235
+ ++ TNLYFQP N P ++++ L ++RI +RR L +G+E++ + + +YL
Sbjct: 212 HVCITDTNLYFQPLNGY-PKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYL 270
Query: 236 TLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDL 295
RD LY + E ++ E L+WQ G LSNY YL++LN+LADRS NDL
Sbjct: 271 KFYEPQDRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDL 330
Query: 296 TQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPHPKFLYGS 355
+QYPVFPW+I +Y+ LDLS+ +RDLSKP+GALN RLERL RY EMP PKF+YGS
Sbjct: 331 SQYPVFPWIIHDYSSSELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPKFMYGS 390
Query: 356 HYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFY 415
HYS+PG+VLFYLVR P+YMLCLQNGRFD+ DRMFNSI + W+N L +DFKEL+PEFY
Sbjct: 391 HYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFY 450
Query: 416 DTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHL 475
+ FL NS + G R G V V+LPPWA PE F+ K + ALES+ VS LH
Sbjct: 451 GDDVS--FLVNSLKLDLGKRQGGQMVDDVELPPWASSPEDFLQKSKDALESNYVSEHLHE 508
Query: 476 WIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIF 535
WIDLIFGYKQ+G +A A N+F+ L YEG V+L+ +QD +++ A+ QI+EFGQ PKQ+F
Sbjct: 509 WIDLIFGYKQKGSDAVGAHNVFHPLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLF 568
Query: 536 HSPHPRRTLTSQSSLLKHSTILSDVSNS-----------------WCDKSILEPLHFCHS 578
+PHPRR SL + S+ + +++S W + + L+ LH +
Sbjct: 569 VTPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEESKTLAWNNITKLQ-LHEHYK 627
Query: 579 -HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637
HKEA+T + + G SV + +D+ LK+ S ++ +RS S+M LSS +LP + T+
Sbjct: 628 IHKEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDATV 687
Query: 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
+ WD+ V Y + GR L GH+DA+S + W + R L S SWD TV+VW+ G
Sbjct: 688 ITSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNR--LYSASWDSTVKVWS-GVP- 743
Query: 698 SHMKPSK----SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD 753
+ M +K L+++L+ D + ++++ + L GT+ G + IW L + Q+
Sbjct: 744 AEMPGTKRHHFDLLAELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPC 803
Query: 754 DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813
+ V FS D VLS G + LNV D+ TGM + + +E C W G V+
Sbjct: 804 H-SGIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVWDGNS-VLS 861
Query: 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLV-GCWDSCVVIYDVE 866
G G + + DL+ ++ ++++ H AV + + C+ ++ G D ++ + ++
Sbjct: 862 GSQSGELLVWDLLGAKISERIQGHTGAVTCIWMNEQCSSIITGGEDRQIIFWKLQ 916
|
|
| RGD|727868 Nsmaf "neutral sphingomyelinase (N-SMase) activation associated factor" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 1.8e-160, Sum P(3) = 1.8e-160
Identities = 216/448 (48%), Positives = 294/448 (65%)
Query: 117 QLHRAASLPA-AEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKITPLVVNPG 175
QLHRA+ L +Q M+ I +R ++ SF+ + + + EK+ +E +TPLV N G
Sbjct: 152 QLHRASCLDKLGDQMAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMMTPLVTNSG 211
Query: 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYL 235
+ ++ TNLYFQP N P ++++ L ++RI +RR L +G+E++ + + +YL
Sbjct: 212 HVCITDTNLYFQPLNGY-PKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTEDDLCSDIYL 270
Query: 236 TLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDL 295
RD LY + E ++ E L+WQ G LSNY YL++ N+LADR NDL
Sbjct: 271 KFYEPQDRDDLYFYIATYLEHHVAEHTAESYMLQWQRGHLSNYQYLLHFNNLADRGCNDL 330
Query: 296 TQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPHPKFLYGS 355
+QYPVFPWVIS+Y+ LDLS+ +RDLSKP+GALNP RLERL RY EMP PKF+YGS
Sbjct: 331 SQYPVFPWVISDYSNPELDLSNPATFRDLSKPVGALNPERLERLLTRYQEMPEPKFMYGS 390
Query: 356 HYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFY 415
HYS+PG+VLFYLVR P+YMLCLQNGRFD+ DRMFNSI + W+N L ++FKEL+PEFY
Sbjct: 391 HYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIVETWKNCLDGATNFKELIPEFY 450
Query: 416 DTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHL 475
D + FL NS + G R G V V+LP WA P+ F+ K + ALES VS LH
Sbjct: 451 DED--ASFLINSLKLDLGKRQGGQMVDDVELPAWASSPQDFLQKNKDALESSYVSEHLHE 508
Query: 476 WIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIF 535
WIDLIFGYKQ+G EA A N+F+ L YEG V+L+ ++D + + A+ QI+EFGQ PKQ+F
Sbjct: 509 WIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDDKVAMLTQILEFGQTPKQLF 568
Query: 536 HSPHPRRTLTSQSSLLKHSTILSDVSNS 563
+PHPRR SL + S+ + +++S
Sbjct: 569 VTPHPRRITPKFKSLSQASSYNASMTDS 596
|
|
| ZFIN|ZDB-GENE-050417-342 nsmaf "neutral sphingomyelinase (N-SMase) activation associated factor" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1342 (477.5 bits), Expect = 1.5e-151, Sum P(2) = 1.5e-151
Identities = 303/772 (39%), Positives = 452/772 (58%)
Query: 109 DVCLVSIEQLHRAASLPA-AEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKI 167
DV + + QLHRA+ L ++Q M+A I +R ++ F+ + +++ E +E +
Sbjct: 137 DVVQILL-QLHRASRLDKQSDQTAMIAAILQSRLARTRFDKNSFQNVTELPHMECEAEMV 195
Query: 168 TPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDL 227
+PLV N G + ++ NLYFQP N+ P ++++ L ++RI +RR L+ +G+E++ +
Sbjct: 196 SPLVTNAGHVCITDCNLYFQPLNSY-PDSVVQIGLHSVRRIYKRRHGLRPLGLEVFCTEN 254
Query: 228 EPVKYLYLTLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSL 287
+ +YL RD LY + E ++ E L+WQ G +SNY YL++LN+L
Sbjct: 255 DLCSDIYLKFYKTKDRDELYYYIATFLENHVAEHTAESYMLQWQRGHISNYQYLLHLNNL 314
Query: 288 ADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMP 347
ADRS+NDL+QYPVFPWVIS+Y+ LDL + ++RDLSKPIGALN RLERL ERY +MP
Sbjct: 315 ADRSVNDLSQYPVFPWVISDYSSTQLDLLNPASFRDLSKPIGALNKERLERLLERYRDMP 374
Query: 348 HPKFLYGSHYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDF 407
P+F+YGSHYS+PG+VLFYLVR P++MLCLQNGRFDH DRMFNSI + W+N L +DF
Sbjct: 375 EPRFMYGSHYSSPGYVLFYLVRVAPEHMLCLQNGRFDHADRMFNSIGETWKNCLEGGTDF 434
Query: 408 KELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESD 467
KEL+PEFY ++ FL N G+ G R G +V V+LPPWA P+ F+ K+ ALES
Sbjct: 435 KELIPEFYGSDSS--FLRNLLGLDLGRRQGGGRVENVELPPWASDPDDFLQKMCLALESQ 492
Query: 468 IVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEF 527
VS LH WIDLIFGYKQRG EA + N+F+ L YEG V+ D ++D +Q+ A+ QI+EF
Sbjct: 493 YVSEHLHEWIDLIFGYKQRGSEAVASHNVFHPLTYEGGVDCDSIEDPDQKIAMLTQILEF 552
Query: 528 GQIPKQIFHSPHPRR------TLTSQSSLLKHSTILSDVS---NSWCDK---------SI 569
GQ P+Q+F +PHP+R L++ SL S+ LS VS S+ D S
Sbjct: 553 GQTPRQLFVTPHPQRITPRFYNLSTTPSL--SSSELSPVSPCMESFEDLTEESRKMAWSN 610
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE----RSAVLSSMTL 625
+ L HK I A+ G ++++ + +LK +E RS S+M L
Sbjct: 611 MNKLVLQSCHK--IHKEAVTGVAVTLSGDSIFTTSQDSTLKMFSKENGLQRSVSFSNMAL 668
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD 685
SS +LPD+ ++ WD+ V Y + GR L GH+DA+S + W + + L + SWD
Sbjct: 669 SSCLMLPDDKIVVCSSWDNNVYFYSIAYGRRQDTLMGHDDAVSDICWRDDK--LYTASWD 726
Query: 686 CTVRVWNTGAS--WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743
TV+VW A+ S+ + +++ + + + L +S LA GT+ G L +W L
Sbjct: 727 STVKVWECVAADISSNKRTQFDPLAEFEHEAGVNTLDLSPAGTLLATGTKEGTLTVWDLA 786
Query: 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCL 803
+ L QL+ + ++ V FS D +LS G + L V D+ TGM + E++ C
Sbjct: 787 SPLPVNQLTCH-SGKIHQVAFSPDSRHILSVGEDSCLMVTDVQTGMLIATIPAEQEQRCF 845
Query: 804 SWAGEEKVILGGALGMVYLVDLIQVQLLKQV-RAHKDAVLSLHF-DNCTMLV 853
W G V+ GG G + + +L+ +++ ++ AH AV + + C+ ++
Sbjct: 846 CWDGNT-VLSGGISGDLSVWNLLNSKVVHKIPAAHSGAVTCMWMNEQCSSII 896
|
|
| MGI|MGI:1341864 Nsmaf "neutral sphingomyelinase (N-SMase) activation associated factor" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 3.5e-135, Sum P(3) = 3.5e-135
Identities = 248/599 (41%), Positives = 351/599 (58%)
Query: 117 QLHRAASLPA-AEQNQMVATIATARQSKVSFNLSWLEDLYEKVILETFGNKITPLVVNPG 175
QLHRA+ L +Q M+ I +R ++ SF+ + + + EK+ +E +TPLV NPG
Sbjct: 152 QLHRASCLDKLGDQMAMITAILQSRLARTSFDKNRFQSVSEKLHMECKAEMVTPLVTNPG 211
Query: 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYL 235
+ ++ T+LYFQP N P ++++ L ++RI +RR L +G+E++ D + +YL
Sbjct: 212 HVCITDTSLYFQPLNGY-PKPVVQITLQDVRRIYKRRHGLMPLGLEVFCTDDDLCSDIYL 270
Query: 236 TLKTQGARDTLYNALLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDL 295
RD LY + E + E L+WQ G LSNY YL++LN+LADRS NDL
Sbjct: 271 KFYEPQDRDDLYFYIATYLEHHAAEHTAESYMLQWQRGHLSNYQYLLHLNNLADRSCNDL 330
Query: 296 TQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPHPKFLYGS 355
+QYPVFPW+IS+Y+ LDLS+ +RDLSKP+GALN RLERL RY EMP P+F+YGS
Sbjct: 331 SQYPVFPWIISDYSSPELDLSNPATFRDLSKPVGALNAERLERLLTRYQEMPEPRFMYGS 390
Query: 356 HYSTPGFVLFYLVRKFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFY 415
HYS+PG+VLFYLVR P+YMLCLQNGRFD+ DRMFNSI + W+N L +DFKEL+PEFY
Sbjct: 391 HYSSPGYVLFYLVRIAPEYMLCLQNGRFDNADRMFNSIAETWKNCLDGATDFKELIPEFY 450
Query: 416 DTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHL 475
D + FL NS + G R G V V LP WA P+ F+ K + ALES VS LH
Sbjct: 451 DEDVS--FLVNSLKLDLGKRQGGQMVDDVDLPAWASSPQDFLQKNKDALESGYVSEHLHE 508
Query: 476 WIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIF 535
WIDLIFGYKQ+G EA A N+F+ L YEG V+L+ ++D +++ A+ QI+EFGQ PKQ+F
Sbjct: 509 WIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDEKVAMLTQILEFGQTPKQLF 568
Query: 536 HSPHPRRTLTSQSSLLKHSTI---LSDVSNSWCDKSILEPLHFCHS-----------HKE 581
+PHPRR SL + S+ L+D S ++S + + H++
Sbjct: 569 VTPHPRRITPKFKSLSQASSYNASLTDSPVSPGEESFEDLTEESRTLAWSNIAKLQLHEQ 628
Query: 582 -AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640
I A+ G +S + +LK +E + S++ S++ + +C +L G
Sbjct: 629 YKIHKEAVTGIAVSCNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMAL--SSCLLLPG 686
Query: 641 CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-------RKRLISGSWDCTVRVWN 692
D+ V+ + +A + + D+ RL SGSWD TV+VW+
Sbjct: 687 --DTTVISSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHNDRLYSGSWDSTVKVWS 743
|
|
| UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 1.5e-92, Sum P(4) = 1.5e-92
Identities = 177/367 (48%), Positives = 218/367 (59%)
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ I RR+LLQ +EI+ F D VK + L G + L
Sbjct: 2138 IRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSF--GLPQTR 2195
Query: 255 ELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPWVI+NY
Sbjct: 2196 RISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYES 2255
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYL 367
+ LDL+ N+RDLSKPIGALNP R ERY PKF YG+HYST FVL +L
Sbjct: 2256 EELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWL 2315
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
+R F Y L LQ G+FDH DR F+SI WRN + SD KEL+PEFY + F+
Sbjct: 2316 LRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEM--FVN 2373
Query: 426 -NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYK 484
N+Y + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WIDLIFGYK
Sbjct: 2374 FNNYNL--GVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYK 2431
Query: 485 QRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTL 544
Q+G EA +A N+FYYL YEG+VNL+ + D R A+E QI FGQ P Q+ PHP R
Sbjct: 2432 QQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGS 2491
Query: 545 TSQSSLL 551
Q S L
Sbjct: 2492 AMQVSPL 2498
|
|
| MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 1.0e-91, Sum P(3) = 1.0e-91
Identities = 175/367 (47%), Positives = 220/367 (59%)
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ I RR+LLQ +EI+ F D VK + L G + L
Sbjct: 2131 IRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGVGTSF--GLPQTR 2188
Query: 255 ELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPWVI+NY
Sbjct: 2189 RISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYES 2248
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYL 367
+ LDL+ +N+RDLSKPIGALNP R ER+ PKF YG+HYST FVL +L
Sbjct: 2249 EELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWL 2308
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
+R F Y L LQ G+FDH DR F+S+ WRN + SD KEL+PEFY + F+
Sbjct: 2309 LRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEM--FVN 2366
Query: 426 -NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYK 484
N+Y + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WIDLIFGYK
Sbjct: 2367 FNNYNL--GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYK 2424
Query: 485 QRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTL 544
Q+G EA +A N+FYYL YEG+VNL+ + D R A+E QI FGQ P Q+ PHP R
Sbjct: 2425 QQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGS 2484
Query: 545 TSQSSLL 551
Q+S L
Sbjct: 2485 AMQASPL 2491
|
|
| UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 2.3e-91, Sum P(4) = 2.3e-91
Identities = 175/367 (47%), Positives = 220/367 (59%)
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ I RR+LLQ +EI+ F D VK + L G + L
Sbjct: 2060 IRSIFSRRYLLQNTALEIFMANRVAIMFNFPDPATVKKVVNYLPRVGIGTSF--GLPQTR 2117
Query: 255 ELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q MT RWQ+ +SN++YLM+LN++A R+ NDL QYPVFPWVI+NY
Sbjct: 2118 RISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVITNYES 2177
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYL 367
+ LDL+ +N+RDLSKPIGALNP R ERY PKF YG+HYST FVL +L
Sbjct: 2178 EELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWL 2237
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
+R F Y L LQ G+FDH DR F+SI WRN + SD KEL+PEFY + F+
Sbjct: 2238 LRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLSEM--FVN 2295
Query: 426 -NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYK 484
N+Y + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WIDLIFGYK
Sbjct: 2296 FNNYNL--GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYK 2353
Query: 485 QRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTL 544
Q+G EA +A N+FYYL YEG+VNL+ + D R A++ QI FGQ P Q+ PHP R
Sbjct: 2354 QQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVKAQIRSFGQTPSQLLIEPHPPRGS 2413
Query: 545 TSQSSLL 551
Q+S L
Sbjct: 2414 AMQASPL 2420
|
|
| RGD|1311428 Lrba "LPS-responsive vesicle trafficking, beach and anchor containing" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 2.7e-91, Sum P(3) = 2.7e-91
Identities = 174/367 (47%), Positives = 220/367 (59%)
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ I RR+LLQ +EI+ F D VK + L G + L
Sbjct: 1984 IRSIFSRRYLLQNTALEIFMANRVAVMFNFPDSATVKKVVNYLPRVGVGTSF--GLPQTR 2041
Query: 255 ELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPWVI+NY
Sbjct: 2042 RISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYES 2101
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYL 367
+ LDL+ +N+RDLSKPIGALNP R ER+ PKF YG+HYST FVL +L
Sbjct: 2102 EELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWL 2161
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
+R F Y L LQ G+FDH DR F+S+ WRN + SD KEL+PEFY + F+
Sbjct: 2162 LRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEM--FVN 2219
Query: 426 -NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYK 484
N+Y + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WIDLIFGYK
Sbjct: 2220 FNNYNL--GVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYK 2277
Query: 485 QRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTL 544
Q+G EA +A N+FYYL YEG+V+L+ + D R A+E QI FGQ P Q+ PHP R
Sbjct: 2278 QQGPEAVRALNVFYYLTYEGAVSLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGS 2337
Query: 545 TSQSSLL 551
Q+S L
Sbjct: 2338 AMQASPL 2344
|
|
| FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 7.3e-89, Sum P(4) = 7.3e-89
Identities = 173/376 (46%), Positives = 223/376 (59%)
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGAR-----DTLYNA 249
++ I RR+LLQ V +EI+ F D VK + L G A
Sbjct: 2843 VRAIFSRRYLLQNVALEIFLASRTSILFAFPDQHTVKKVIKALPRVGVGIKYGIPQTRRA 2902
Query: 250 LLDLPELQLSHSDQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYT 309
+ P + +S+ MT +WQ +SN++YLM+LN++A R+ NDL QYP+FPWV++NY
Sbjct: 2903 SMMSPRQLMRNSN---MTQKWQRREISNFEYLMFLNTIAGRTYNDLNQYPIFPWVLTNYE 2959
Query: 310 CDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFY 366
LDLS +NYRDLSKPIGALNP+R +ERY P F YG+HYST F L +
Sbjct: 2960 SKDLDLSLPSNYRDLSKPIGALNPSRRAYFEERYESWDSDTIPPFHYGTHYSTAAFTLNW 3019
Query: 367 LVR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFL 424
LVR F L LQ G+FD+PDR+F+S+ W+N + SD KEL+PE+Y +
Sbjct: 3020 LVRVEPFTTMFLALQGGKFDYPDRLFSSVSLSWKNCQRDTSDVKELIPEWYFLPE---MF 3076
Query: 425 ENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYK 484
NS G G+R DG V ++LPPWA+ PE FV R ALES+ VS QLH WIDLIFGYK
Sbjct: 3077 YNSSGYRLGHREDGALVDDIELPPWAKSPEEFVRINRMALESEFVSCQLHQWIDLIFGYK 3136
Query: 485 QRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTL 544
QRG EA +A N+FYYL YEGSV+LD V D R A+E QI FGQ P Q+ PHP R+
Sbjct: 3137 QRGPEAIRATNVFYYLTYEGSVDLDGVLDPVMREAVENQIRNFGQTPSQLLMEPHPPRSS 3196
Query: 545 TSQSSLLKHSTILSDV 560
S + S + D+
Sbjct: 3197 AMHLSPMMFSAMPEDL 3212
|
|
| MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 1.5e-87, Sum P(3) = 1.5e-87
Identities = 173/372 (46%), Positives = 216/372 (58%)
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ + RR+LLQ +E++ F D VK + +L G T Y L
Sbjct: 2202 IRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYSLPRVGV-GTSYG-LPQAR 2259
Query: 255 ELQLSHSDQ----EIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q MT RWQ +SN++YLM+LN++A R+ NDL QYPVFPWV++NY
Sbjct: 2260 RISLATPRQLYKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYES 2319
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYN---EMPHPKFLYGSHYSTPGFVLFYL 367
+ LDL+ N+RDLSKPIGALNP R ERY E P F Y +HYST L +L
Sbjct: 2320 EELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQSPPFHYNTHYSTATSALSWL 2379
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
VR F + L +G+FDHPDR F+SI WR + SD KEL+PEFY + F+
Sbjct: 2380 VRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRTSQRDTSDVKELIPEFYYLPEM--FV- 2436
Query: 426 NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQ 485
NS G H G R D V V LPPWA+ PE FV R ALES+ VS QLH WIDLIFGYKQ
Sbjct: 2437 NSNGYHLGVREDEVVVNDVDLPPWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQ 2496
Query: 486 RGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLT 545
RG EA +A N+F+YL YEGSVNLD + D R A+E QI FGQ P Q+ PHP R+
Sbjct: 2497 RGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPRSSA 2556
Query: 546 SQSSLLKHSTIL 557
L S ++
Sbjct: 2557 MHLCFLPQSPLM 2568
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q92636 | FAN_HUMAN | No assigned EC number | 0.3799 | 0.9160 | 0.9160 | yes | N/A |
| O35242 | FAN_MOUSE | No assigned EC number | 0.3723 | 0.9138 | 0.9108 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 917 | |||
| smart01026 | 280 | smart01026, Beach, Beige/BEACH domain | 1e-158 | |
| pfam02138 | 274 | pfam02138, Beach, Beige/BEACH domain | 1e-143 | |
| cd06071 | 275 | cd06071, Beach, BEACH (Beige and Chediak-Higashi) | 1e-140 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-24 | |
| cd01201 | 113 | cd01201, PH_BEACH, Pleckstrin homology domain in B | 3e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-14 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-05 |
| >gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain | Back alignment and domain information |
|---|
Score = 464 bits (1197), Expect = e-158
Identities = 162/283 (57%), Positives = 204/283 (72%), Gaps = 10/283 (3%)
Query: 267 TLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSK 326
T +WQNG +SN++YLM+LN+LA RS NDLTQYPVFPWV+++YT +TLDLS+ + +RDLSK
Sbjct: 1 TQKWQNGEISNFEYLMHLNTLAGRSYNDLTQYPVFPWVLADYTSETLDLSNPSTFRDLSK 60
Query: 327 PIGALNPTRLERLKERYNEMP---HPKFLYGSHYSTPGFVLFYLVRK--FPQYMLCLQNG 381
PIGALNP RLE ERY E+ P F YG+HYS+ G VL+YL+R F L LQ G
Sbjct: 61 PIGALNPERLEFFYERYEELEDPDIPPFHYGTHYSSAGIVLYYLIRLEPFTTLFLQLQGG 120
Query: 382 RFDHPDRMFNSIPDIWRNV-LTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTK 440
RFDH DR+F+S+ WR+ L +M+D KEL+PEF+ +FL N G FG R DG
Sbjct: 121 RFDHADRLFHSVAATWRSASLESMTDVKELIPEFFYL---PEFLVNINGFDFGTRQDGED 177
Query: 441 VGGVQLPPWAE-CPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYY 499
V V+LPPWA+ PE F+ K R+ALES+ VS+ LH WIDLIFGYKQRG EA +A N+F+
Sbjct: 178 VDDVELPPWAKGSPEEFIRKHREALESEYVSQHLHHWIDLIFGYKQRGKEAVEALNVFHP 237
Query: 500 LCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
L YEG+V+LD ++D +R ALE QI FGQ PKQ+F PHP R
Sbjct: 238 LTYEGAVDLDSIEDPVERKALEGQIHNFGQTPKQLFKEPHPPR 280
|
The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280 |
| >gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain | Back alignment and domain information |
|---|
Score = 427 bits (1099), Expect = e-143
Identities = 160/280 (57%), Positives = 201/280 (71%), Gaps = 10/280 (3%)
Query: 267 TLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSK 326
T +WQNG +SN++YLM LN+LA RS NDL+QYPVFPWV+++YT +TLDL+D + YRDLSK
Sbjct: 1 TEKWQNGEISNFEYLMLLNTLAGRSFNDLSQYPVFPWVLADYTSETLDLNDPSTYRDLSK 60
Query: 327 PIGALNPTRLERLKERYNEM--PHPKFLYGSHYSTPGFVLFYLVRKFPQYMLC--LQNGR 382
PIGALN RL++ KERY E+ P F YGSHYS+PG VL YL+R P L LQ G+
Sbjct: 61 PIGALNEERLKKFKERYEELDEVGPPFHYGSHYSSPGSVLHYLIRLEPFTTLHIELQGGK 120
Query: 383 FDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVG 442
FDH DR+F+SI + W++V +M+D KEL+PEF+ +FL+N G R DG KV
Sbjct: 121 FDHADRLFSSIEEAWKSVSESMNDVKELIPEFFYL---PEFLKNINNFDLGKR-DGEKVD 176
Query: 443 GVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCY 502
V+LPPWA+ PE FV K R+ALESD VS LH WIDLIFGYKQRG EA +A N+F+ L Y
Sbjct: 177 DVELPPWAKSPEEFVYKNRKALESDYVSENLHNWIDLIFGYKQRGEEAIEAKNVFHPLTY 236
Query: 503 EGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
E V D ++D +R A+E QI FGQ PKQ+F PHP+R
Sbjct: 237 EDIV--DKIKDPVEREAIEAQISNFGQTPKQLFTEPHPKR 274
|
Length = 274 |
| >gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Score = 417 bits (1073), Expect = e-140
Identities = 163/281 (58%), Positives = 195/281 (69%), Gaps = 11/281 (3%)
Query: 267 TLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSK 326
T +WQNG +SN++YLMYLN+LA RS NDL+QYP+FPWVIS+YT + LDL+D + YRDLSK
Sbjct: 1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSK 60
Query: 327 PIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYLVRKFPQYMLC--LQNG 381
PIGALN RL+ LKERY P F YGSHYS P VL+YLVR P L LQ G
Sbjct: 61 PIGALNKERLQLLKERYESDSDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGG 120
Query: 382 RFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKV 441
FD DR+FNSIP WR+ N SD KEL+PEFY +F N FG + DG KV
Sbjct: 121 HFDAADRLFNSIPSSWRSASENPSDVKELIPEFYYL---PEFFLNINKFDFGKQ-DGEKV 176
Query: 442 GGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLC 501
V+LPPWA+ PE F+ K R+ALES+ VS+ LH WIDLIFGYKQRG EA KA N+F+ L
Sbjct: 177 NDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLT 236
Query: 502 YEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
YEGSV+LD + +R A+E QI FGQ P Q+F PHP+R
Sbjct: 237 YEGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-38
Identities = 77/321 (23%), Positives = 133/321 (41%), Gaps = 50/321 (15%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637
H +T VA +G +A+ D +K+ L+TG R+ + + + D +
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66
Query: 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
G D + ++D+E G V L GH +S VA+ + L S S D T++VW+
Sbjct: 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG- 125
Query: 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA 757
K +L D + +A S D +A ++ G + +W L L+
Sbjct: 126 ---KCLTTLRGHTD---WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG- 178
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGAL 817
VN V FS DG ++LS ++ + ++DL+TG
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----------------------------- 209
Query: 818 GMVYLVDLIQVQLLKQVRAHKDAVLSLHFD-NCTMLVGC-WDSCVVIYDVECGRIVTELA 875
+ L +R H++ V S+ F + +L D + ++D+ G V L+
Sbjct: 210 -----------KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 876 GHEDAISCVAWDEKRKRLISG 896
GH ++++ +AW KRL SG
Sbjct: 259 GHTNSVTSLAWSPDGKRLASG 279
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 16/246 (6%)
Query: 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI 716
L GH ++CVA+ K L +GS D T++VW+ + ++L +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD----LETGELLRTLKGHTGPVRDV 57
Query: 717 KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN 776
A D LA G+ + +W LE + L+ + V+ V FS DG + S
Sbjct: 58 AASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGH-TSYVSSVAFSPDGRILSSSSR 113
Query: 777 NCMLNVYDLTTGMQVCNKVFEEKL---LCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLK 832
+ + V+D+ TG C ++++ + + + G + L DL + +
Sbjct: 114 DKTIKVWDVETG--KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171
Query: 833 QVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890
+ H V S+ F D +L D + ++D+ G+ + L GHE+ ++ VA+
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231
Query: 891 KRLISG 896
L SG
Sbjct: 232 YLLASG 237
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (269), Expect = 1e-24
Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 19/344 (5%)
Query: 574 HFCHSHKEAITAVAIC---GEGISVASVGRDAMLKIHSLKT-GRQERSAVLSSMTLSSLC 629
H +++ +A+ G I +AS D +K+ L T G+ R+ S +++SL
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA 162
Query: 630 ILPDN-CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDCT 687
PD D + ++D+ G+ ++ LAGH D +S +A+ LI SGS D T
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222
Query: 688 VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM 747
+R+W+ K L S L + + S D + LA G+ G + +W L +
Sbjct: 223 IRLWDL-------STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275
Query: 748 TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLS 804
+ ++SV V FS DG + S ++ + ++DL TG + + E + LS
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 805 WAGEEKVIL--GGALGMVYLVDLIQVQLLKQVRAHKDA-VLSLHFDNCTMLVGCWDSCVV 861
++ + +++ G G + L DL + LK + H + +S D + G D V
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
++D+ G ++ L GH ++ + + K L SG+ +L+
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 19/216 (8%)
Query: 537 SPHPRRTLTSQSSLLKHSTILSD---VSNSWCDKSIL-------EPLHFCHSHKEAITAV 586
+ RTLT +S + D +S+S DK+I + L H + + +V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646
A +G VAS +D +K+ L+TG+ + + ++S+ PD +L D +
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201
Query: 647 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL 706
++D+ G+ + L GHE+ ++ VA+ L SGS D T+RVW+ +
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR--------TGEC 253
Query: 707 VSQLDL-DNRIKCLAISKDNNQLAVGTEAGELIIWS 741
V L N + LA S D +LA G+ G + IW
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|241237 cd01201, PH_BEACH, Pleckstrin homology domain in BEACH domain containing proteins | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 3e-16
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 156 EKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIE--------------PHKLLKVR 201
EK++L T + +TPL V PG +++++T+LYF + H + K
Sbjct: 1 EKILLSTNCSLVTPLDVIPGTLLITTTHLYFVDDEDDSEDGKIVSQKVLSKGEHLVFKWS 60
Query: 202 LAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
L+ I+ + +RR+LL+ +EI+ D + +L +Q RD +Y+ LL L
Sbjct: 61 LSEIREVHKRRYLLRPTALEIFLAD---GRNYFLNFPSQSDRDKVYSKLLSLL 110
|
The BEACH domain is present in several eukaroyotic proteins CHS, neurobeachin (Nbea), LRBA (also called BGL, beige-like, or CDC4L), FAN, KIAA1607, and LvsA-LvsF. CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in mammals and beige is the name for the CHS disease in mice. The CHS disease is associated with the presence of giant, perinuclear vesicles (lysosomes, melanosomes, and others) and CHS protein is thought to play an important role in the fusion, fission, or trafficking of these vesicles. All BEACH proteins contain the following domains: PH, BEACH, and WD40. The WD40 domain is involved in mediating protein-protein interactions involved in targeting proteins to subcellular compartments. The combined PH-BEACH motifs may present a single continuous structural unit involved in protein binding. Some members have an additional N-terminal Laminin G-like (LamG) domains Ca++ mediated receptors or an additional C-terminal FYVE zinc-binding domain which targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.7 bits (195), Expect = 2e-15
Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 13/256 (5%)
Query: 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718
L GHED+I+ +A+ + L+SGS D T+++W+ + + + L + K
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWD----LDNGEKLIKSLEGLHDSSVSKL 115
Query: 719 LAISKDNNQLAVGTEA--GELIIWSLENHLMTQQLSDDINASVNGVLFSEDG-CRVLSCG 775
S D N + + + + G + +W L + + + SV + FS DG
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175
Query: 776 NNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVIL--GGALGMVYLVDLIQVQLLK 832
+ + ++DL TG + + + L+++ + +++ G + G + L DL +LL+
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235
Query: 833 QV-RAHKD-AVLSLHFDNCTMLVGCWDSCVVIYDVECGRI-VTELAGHEDAISCVAWDEK 889
H D V S D + G D + ++D+ + L+GH ++ VA+
Sbjct: 236 STLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 890 RKRLISGNLVGAPKLY 905
K L SG+ G +L+
Sbjct: 296 GKLLASGSSDGTVRLW 311
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.4 bits (181), Expect = 9e-14
Identities = 59/296 (19%), Positives = 125/296 (42%), Gaps = 23/296 (7%)
Query: 511 VQDWNQRHALEVQIMEF-GQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSI 569
++ W+ R + + + SP + S SS + L D+S +
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS--DGTIRLWDLST----GKL 233
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS-SMTLSSL 628
L HS +++ +G +AS D +++ L++ + S ++ S+
Sbjct: 234 LRSTLSGHS-DSVVSSF--SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 629 CILPDNCTMLVGCWDSCVVIYDVECGRIVTELA--GHEDAISCVAWDEKRKRL-ISGSWD 685
PD + G D V ++D+E G++++ L GHE +S +++ L GS D
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745
T+R+W+ + + L+ + + ++ S D ++ G+ G + +W L
Sbjct: 351 GTIRLWDL--------RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801
+ + L + V + FS DG + S ++ + ++DL T ++ + + K+L
Sbjct: 403 SLLRNLDGHTS-RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-09
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
G+++ L GH ++ VA+ L SGS D TVRVW+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (141), Expect = 7e-09
Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 11/208 (5%)
Query: 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759
+ L+ + +L + L++ + + L + ++ L S+
Sbjct: 9 SENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSI 68
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTG---MQVCNKVFEEKLLCLSWA----GEEKVI 812
+ FS DG +LS ++ + ++DL G ++ + + + L+ + +
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 813 LGGALGMVYLVDL-IQVQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVECG 868
G V L DL +L++ + H ++V SL F D + ++D+ G
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188
Query: 869 RIVTELAGHEDAISCVAWDEKRKRLISG 896
+ ++ LAGH D +S +A+ LI+
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-09
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
G ++ L GH ++ VA+ K L SGS D T+++W+
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (136), Expect = 3e-08
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Query: 578 SHKEAITAVAICGEGISVA-SVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCT 636
H+ +++++ +G + D +++ L+TG+ ++ S LS + PD
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSPDGRV 384
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696
+ G D V ++D+ G ++ L GH ++ + + K L SGS D T+R+W+ S
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
Query: 697 WSHMKPSKSLVSQLDLDNRIK 717
+ S + +
Sbjct: 445 LKSVSFSPDGKVLASKSSDLS 465
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.9 bits (133), Expect = 6e-08
Identities = 53/241 (21%), Positives = 105/241 (43%), Gaps = 15/241 (6%)
Query: 681 SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740
GS + + + + P S + ++ I +A S D L G+ G + +W
Sbjct: 33 LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW 92
Query: 741 SLEN-HLMTQQLSDDINASVNGVLF-SEDGCRVLSCG--NNCMLNVYDLTTGMQVCNKVF 796
L+N + + L ++SV+ + S DG +L + + ++DL+T ++ +
Sbjct: 93 DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152
Query: 797 --EEKLLCLSWAGEEKVIL--GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF---DNC 849
E + L+++ + K++ G + L DL + L + H D V SL F
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212
Query: 850 TMLVGCWDSCVVIYDVECGRIV-TELAGHED-AISCVAWDEKRKRLISGNLVGAPKLYAT 907
+ G D + ++D+ G+++ + L+GH D +S + D L SG+ G +L+
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDL 270
Query: 908 E 908
Sbjct: 271 R 271
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 830 LLKQVRAHKDAVLSLHFDNC--TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887
L + ++ H V + F + G D + ++D+E G ++ L GH + VA
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 888 EKRKRLISG 896
L SG
Sbjct: 61 ADGTYLASG 69
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 917 | |||
| cd06071 | 275 | Beach BEACH (Beige and Chediak-Higashi) domains, i | 100.0 | |
| PF02138 | 270 | Beach: Beige/BEACH domain; InterPro: IPR000409 The | 100.0 | |
| KOG1787|consensus | 1126 | 100.0 | ||
| KOG1786|consensus | 1081 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG1786|consensus | 1081 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0279|consensus | 315 | 99.98 | ||
| KOG0306|consensus | 888 | 99.98 | ||
| KOG0316|consensus | 307 | 99.97 | ||
| KOG0282|consensus | 503 | 99.97 | ||
| KOG0296|consensus | 399 | 99.97 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0293|consensus | 519 | 99.97 | ||
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0643|consensus | 327 | 99.97 | ||
| KOG0281|consensus | 499 | 99.97 | ||
| KOG0286|consensus | 343 | 99.97 | ||
| KOG0263|consensus | 707 | 99.97 | ||
| KOG0273|consensus | 524 | 99.97 | ||
| KOG0276|consensus | 794 | 99.97 | ||
| KOG0315|consensus | 311 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0278|consensus | 334 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.96 | ||
| KOG0278|consensus | 334 | 99.96 | ||
| KOG0275|consensus | 508 | 99.96 | ||
| KOG0292|consensus | 1202 | 99.96 | ||
| KOG0276|consensus | 794 | 99.96 | ||
| KOG0285|consensus | 460 | 99.96 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG0288|consensus | 459 | 99.96 | ||
| KOG1539|consensus | 910 | 99.95 | ||
| KOG0284|consensus | 464 | 99.95 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0305|consensus | 484 | 99.95 | ||
| KOG0266|consensus | 456 | 99.95 | ||
| KOG0274|consensus | 537 | 99.95 | ||
| KOG1446|consensus | 311 | 99.94 | ||
| KOG0265|consensus | 338 | 99.94 | ||
| KOG1407|consensus | 313 | 99.94 | ||
| KOG0645|consensus | 312 | 99.94 | ||
| KOG0316|consensus | 307 | 99.94 | ||
| KOG0640|consensus | 430 | 99.94 | ||
| KOG0973|consensus | 942 | 99.94 | ||
| KOG0283|consensus | 712 | 99.94 | ||
| KOG0268|consensus | 433 | 99.94 | ||
| KOG0772|consensus | 641 | 99.94 | ||
| KOG0640|consensus | 430 | 99.94 | ||
| KOG1539|consensus | 910 | 99.94 | ||
| KOG0277|consensus | 311 | 99.94 | ||
| KOG0282|consensus | 503 | 99.94 | ||
| KOG1408|consensus | 1080 | 99.94 | ||
| KOG0294|consensus | 362 | 99.94 | ||
| KOG0299|consensus | 479 | 99.93 | ||
| KOG0310|consensus | 487 | 99.93 | ||
| KOG0289|consensus | 506 | 99.93 | ||
| KOG0310|consensus | 487 | 99.93 | ||
| KOG0294|consensus | 362 | 99.93 | ||
| KOG2106|consensus | 626 | 99.93 | ||
| KOG0308|consensus | 735 | 99.93 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0313|consensus | 423 | 99.93 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1446|consensus | 311 | 99.93 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0647|consensus | 347 | 99.92 | ||
| KOG0300|consensus | 481 | 99.92 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0283|consensus | 712 | 99.92 | ||
| KOG0305|consensus | 484 | 99.92 | ||
| KOG0300|consensus | 481 | 99.92 | ||
| KOG0973|consensus | 942 | 99.92 | ||
| KOG1407|consensus | 313 | 99.91 | ||
| KOG1036|consensus | 323 | 99.91 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG2106|consensus | 626 | 99.91 | ||
| KOG0277|consensus | 311 | 99.91 | ||
| KOG2048|consensus | 691 | 99.91 | ||
| KOG0275|consensus | 508 | 99.91 | ||
| KOG0268|consensus | 433 | 99.9 | ||
| KOG0308|consensus | 735 | 99.9 | ||
| KOG1036|consensus | 323 | 99.9 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0301|consensus | 745 | 99.9 | ||
| KOG0641|consensus | 350 | 99.9 | ||
| KOG0646|consensus | 476 | 99.9 | ||
| KOG0647|consensus | 347 | 99.89 | ||
| KOG1063|consensus | 764 | 99.89 | ||
| KOG0641|consensus | 350 | 99.89 | ||
| KOG0639|consensus | 705 | 99.89 | ||
| KOG1063|consensus | 764 | 99.89 | ||
| KOG2048|consensus | 691 | 99.89 | ||
| KOG0299|consensus | 479 | 99.89 | ||
| KOG0288|consensus | 459 | 99.89 | ||
| KOG1408|consensus | 1080 | 99.89 | ||
| KOG0289|consensus | 506 | 99.88 | ||
| KOG2055|consensus | 514 | 99.88 | ||
| KOG2096|consensus | 420 | 99.88 | ||
| KOG0650|consensus | 733 | 99.88 | ||
| KOG0643|consensus | 327 | 99.88 | ||
| KOG1274|consensus | 933 | 99.88 | ||
| KOG0264|consensus | 422 | 99.87 | ||
| KOG4283|consensus | 397 | 99.87 | ||
| KOG1273|consensus | 405 | 99.87 | ||
| KOG0639|consensus | 705 | 99.87 | ||
| KOG0321|consensus | 720 | 99.86 | ||
| KOG1332|consensus | 299 | 99.86 | ||
| KOG0646|consensus | 476 | 99.85 | ||
| KOG2445|consensus | 361 | 99.85 | ||
| KOG0269|consensus | 839 | 99.85 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0264|consensus | 422 | 99.84 | ||
| KOG0267|consensus | 825 | 99.84 | ||
| KOG1332|consensus | 299 | 99.84 | ||
| KOG2096|consensus | 420 | 99.84 | ||
| KOG0772|consensus | 641 | 99.84 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0267|consensus | 825 | 99.83 | ||
| KOG4328|consensus | 498 | 99.83 | ||
| KOG1274|consensus | 933 | 99.83 | ||
| KOG1445|consensus | 1012 | 99.83 | ||
| KOG1188|consensus | 376 | 99.82 | ||
| KOG4328|consensus | 498 | 99.82 | ||
| cd01201 | 108 | Neurobeachin Neurobeachin Pleckstrin homology-like | 99.82 | |
| KOG2445|consensus | 361 | 99.82 | ||
| KOG2919|consensus | 406 | 99.82 | ||
| KOG4283|consensus | 397 | 99.81 | ||
| KOG1538|consensus | 1081 | 99.81 | ||
| KOG1034|consensus | 385 | 99.81 | ||
| KOG0270|consensus | 463 | 99.81 | ||
| KOG0269|consensus | 839 | 99.8 | ||
| KOG0302|consensus | 440 | 99.8 | ||
| KOG4378|consensus | 673 | 99.8 | ||
| KOG0270|consensus | 463 | 99.79 | ||
| KOG4378|consensus | 673 | 99.79 | ||
| KOG1009|consensus | 434 | 99.78 | ||
| KOG0307|consensus | 1049 | 99.78 | ||
| KOG0321|consensus | 720 | 99.77 | ||
| KOG0322|consensus | 323 | 99.77 | ||
| KOG2055|consensus | 514 | 99.77 | ||
| KOG0644|consensus | 1113 | 99.77 | ||
| KOG1963|consensus | 792 | 99.77 | ||
| KOG1538|consensus | 1081 | 99.76 | ||
| KOG4227|consensus | 609 | 99.75 | ||
| PF14844 | 106 | PH_BEACH: PH domain associated with Beige/BEACH; P | 99.74 | |
| KOG0302|consensus | 440 | 99.74 | ||
| KOG1310|consensus | 758 | 99.74 | ||
| KOG0650|consensus | 733 | 99.72 | ||
| KOG0307|consensus | 1049 | 99.72 | ||
| KOG0649|consensus | 325 | 99.72 | ||
| KOG1240|consensus | 1431 | 99.71 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG1273|consensus | 405 | 99.69 | ||
| KOG0642|consensus | 577 | 99.69 | ||
| KOG1587|consensus | 555 | 99.69 | ||
| KOG1007|consensus | 370 | 99.68 | ||
| KOG2919|consensus | 406 | 99.68 | ||
| KOG1188|consensus | 376 | 99.68 | ||
| KOG1523|consensus | 361 | 99.67 | ||
| KOG1034|consensus | 385 | 99.67 | ||
| KOG0642|consensus | 577 | 99.66 | ||
| KOG0303|consensus | 472 | 99.66 | ||
| KOG0649|consensus | 325 | 99.65 | ||
| KOG1517|consensus | 1387 | 99.65 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| KOG1787|consensus | 1126 | 99.64 | ||
| KOG0303|consensus | 472 | 99.63 | ||
| KOG1334|consensus | 559 | 99.62 | ||
| KOG0771|consensus | 398 | 99.62 | ||
| KOG1524|consensus | 737 | 99.62 | ||
| KOG1007|consensus | 370 | 99.62 | ||
| KOG1524|consensus | 737 | 99.61 | ||
| KOG2110|consensus | 391 | 99.6 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG0771|consensus | 398 | 99.59 | ||
| KOG1963|consensus | 792 | 99.59 | ||
| KOG4497|consensus | 447 | 99.59 | ||
| KOG1523|consensus | 361 | 99.58 | ||
| KOG0644|consensus | 1113 | 99.57 | ||
| KOG1009|consensus | 434 | 99.56 | ||
| KOG1517|consensus | 1387 | 99.56 | ||
| KOG0290|consensus | 364 | 99.55 | ||
| KOG1445|consensus | 1012 | 99.54 | ||
| KOG1240|consensus | 1431 | 99.52 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.52 | |
| KOG0290|consensus | 364 | 99.52 | ||
| KOG2110|consensus | 391 | 99.51 | ||
| KOG1587|consensus | 555 | 99.5 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2315|consensus | 566 | 99.49 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.49 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG4227|consensus | 609 | 99.47 | ||
| KOG2139|consensus | 445 | 99.43 | ||
| KOG1272|consensus | 545 | 99.43 | ||
| KOG2139|consensus | 445 | 99.43 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.42 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG2111|consensus | 346 | 99.39 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.39 | |
| KOG2111|consensus | 346 | 99.39 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.38 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG2321|consensus | 703 | 99.38 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG2321|consensus | 703 | 99.36 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG3881|consensus | 412 | 99.35 | ||
| KOG4497|consensus | 447 | 99.34 | ||
| KOG0322|consensus | 323 | 99.33 | ||
| KOG1272|consensus | 545 | 99.32 | ||
| KOG3881|consensus | 412 | 99.3 | ||
| KOG1912|consensus | 1062 | 99.29 | ||
| KOG1310|consensus | 758 | 99.29 | ||
| KOG2394|consensus | 636 | 99.28 | ||
| KOG1409|consensus | 404 | 99.28 | ||
| KOG2314|consensus | 698 | 99.27 | ||
| KOG2394|consensus | 636 | 99.26 | ||
| KOG0974|consensus | 967 | 99.24 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.24 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.23 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.22 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.22 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.22 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG1354|consensus | 433 | 99.21 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.19 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.19 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.19 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.16 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.15 | |
| KOG1409|consensus | 404 | 99.13 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.13 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.13 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.11 | |
| KOG1334|consensus | 559 | 99.1 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.1 | |
| KOG0974|consensus | 967 | 99.09 | ||
| KOG4547|consensus | 541 | 99.08 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.07 | |
| KOG2041|consensus | 1189 | 99.06 | ||
| KOG2315|consensus | 566 | 99.04 | ||
| KOG4190|consensus | 1034 | 99.04 | ||
| KOG2041|consensus | 1189 | 99.03 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.02 | |
| KOG1354|consensus | 433 | 99.01 | ||
| KOG4190|consensus | 1034 | 99.0 | ||
| KOG1064|consensus | 2439 | 99.0 | ||
| KOG1064|consensus | 2439 | 98.95 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.93 | |
| KOG1912|consensus | 1062 | 98.93 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.92 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.91 | |
| KOG4547|consensus | 541 | 98.9 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.9 | |
| KOG0309|consensus | 1081 | 98.9 | ||
| KOG0280|consensus | 339 | 98.84 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.84 | |
| KOG2314|consensus | 698 | 98.81 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.81 | |
| KOG0280|consensus | 339 | 98.81 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.81 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.79 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.79 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.79 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.72 | |
| KOG4714|consensus | 319 | 98.72 | ||
| KOG4649|consensus | 354 | 98.68 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.64 | |
| KOG4714|consensus | 319 | 98.59 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.58 | |
| KOG4532|consensus | 344 | 98.57 | ||
| KOG4532|consensus | 344 | 98.57 | ||
| KOG0882|consensus | 558 | 98.56 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.51 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.51 | |
| KOG3914|consensus | 390 | 98.5 | ||
| KOG3914|consensus | 390 | 98.48 | ||
| KOG0309|consensus | 1081 | 98.39 | ||
| KOG3617|consensus | 1416 | 98.39 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.38 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.37 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.37 | |
| KOG2066|consensus | 846 | 98.36 | ||
| KOG4649|consensus | 354 | 98.34 | ||
| KOG1645|consensus | 463 | 98.33 | ||
| KOG1832|consensus | 1516 | 98.32 | ||
| KOG1275|consensus | 1118 | 98.31 | ||
| KOG2114|consensus | 933 | 98.3 | ||
| KOG2695|consensus | 425 | 98.3 | ||
| KOG0882|consensus | 558 | 98.3 | ||
| KOG1645|consensus | 463 | 98.29 | ||
| KOG2066|consensus | 846 | 98.29 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.26 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.26 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.25 | |
| KOG2695|consensus | 425 | 98.24 | ||
| KOG3621|consensus | 726 | 98.24 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.23 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.2 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.19 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.17 | |
| KOG2114|consensus | 933 | 98.16 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.11 | |
| KOG3621|consensus | 726 | 98.08 | ||
| KOG1832|consensus | 1516 | 98.07 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.07 | |
| KOG1920|consensus | 1265 | 98.06 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.98 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.92 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.92 | |
| KOG1920|consensus | 1265 | 97.91 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.91 | |
| KOG1897|consensus | 1096 | 97.86 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.85 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.85 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.85 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.84 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.82 | |
| KOG1275|consensus | 1118 | 97.81 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.8 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.71 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.68 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.67 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.58 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.57 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.53 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.5 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.48 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.45 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.44 | |
| KOG1008|consensus | 783 | 97.42 | ||
| KOG1008|consensus | 783 | 97.41 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.38 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.29 | |
| KOG3617|consensus | 1416 | 97.26 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.2 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.15 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.14 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.11 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.09 | |
| KOG2444|consensus | 238 | 97.06 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.03 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.01 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.01 | |
| KOG2079|consensus | 1206 | 96.99 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.95 | |
| KOG4640|consensus | 665 | 96.93 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.91 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.79 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.72 | |
| KOG4640|consensus | 665 | 96.66 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.65 | |
| KOG2079|consensus | 1206 | 96.64 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.64 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.54 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.52 | |
| KOG4441|consensus | 571 | 96.39 | ||
| KOG4441|consensus | 571 | 96.35 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.33 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.24 | |
| KOG2395|consensus | 644 | 96.19 | ||
| PRK10115 | 686 | protease 2; Provisional | 96.18 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.12 | |
| KOG1897|consensus | 1096 | 96.1 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.06 | |
| PF02893 | 69 | GRAM: GRAM domain; InterPro: IPR004182 The GRAM do | 95.95 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.93 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.9 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.86 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.59 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.59 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.54 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.54 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.53 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.52 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.49 | |
| PRK10115 | 686 | protease 2; Provisional | 95.41 | |
| KOG2444|consensus | 238 | 95.38 | ||
| KOG4499|consensus | 310 | 95.36 | ||
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.31 | |
| KOG2395|consensus | 644 | 95.28 | ||
| KOG4499|consensus | 310 | 95.2 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 95.01 | |
| smart00568 | 61 | GRAM domain in glucosyltransferases, myotubularins | 94.94 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.73 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.67 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.65 | |
| PF14470 | 96 | bPH_3: Bacterial PH domain | 94.59 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.51 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.41 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.96 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.83 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.5 | |
| KOG3630|consensus | 1405 | 93.47 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.43 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.0 | |
| KOG1916|consensus | 1283 | 92.98 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.66 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.59 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.38 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.31 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.18 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.15 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.11 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.01 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.97 | |
| KOG2280|consensus | 829 | 91.87 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.8 | |
| KOG1983|consensus | 993 | 91.48 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.98 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.64 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.57 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.47 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.93 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.7 | |
| KOG3630|consensus | 1405 | 88.78 | ||
| PF06115 | 118 | DUF956: Domain of unknown function (DUF956); Inter | 88.6 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.5 | |
| KOG2063|consensus | 877 | 88.4 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.92 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.89 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.64 | |
| PLN02153 | 341 | epithiospecifier protein | 87.61 | |
| smart00568 | 61 | GRAM domain in glucosyltransferases, myotubularins | 87.38 | |
| KOG1916|consensus | 1283 | 87.3 | ||
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 87.25 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 87.09 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.08 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 85.94 | |
| PF02893 | 69 | GRAM: GRAM domain; InterPro: IPR004182 The GRAM do | 85.86 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.73 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 85.48 | |
| KOG2247|consensus | 615 | 85.43 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.34 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.4 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 84.36 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 84.34 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 83.83 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 83.39 | |
| KOG2280|consensus | 829 | 82.76 | ||
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 82.41 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 82.07 | |
| KOG4659|consensus | 1899 | 82.06 | ||
| PLN02153 | 341 | epithiospecifier protein | 81.7 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 81.4 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 80.89 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 80.78 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 80.66 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 80.62 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 80.62 | |
| KOG2247|consensus | 615 | 80.52 | ||
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 80.13 |
| >cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-102 Score=817.74 Aligned_cols=270 Identities=60% Similarity=1.039 Sum_probs=260.0
Q ss_pred HHHHHcCCCChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHHHHccC
Q psy3053 267 TLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEM 346 (917)
Q Consensus 267 ~~~w~~~~isnf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~~~~~~ 346 (917)
|++|++|+||||||||+||.+|||||||++|||||||||+||+|++|||+|+.+||||||||||||++|++.+++||+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~ 80 (275)
T cd06071 1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESD 80 (275)
T ss_pred CchhhcCCccHHHHHHHHHHHhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---CCCCcccCCCCCChhhHhhhhcccCchh--HHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccCCCCCc
Q psy3053 347 ---PHPKFLYGSHYSTPGFVLFYLVRKFPQY--MLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKG 421 (917)
Q Consensus 347 ---~~~~~~y~~~ys~~~~v~~~l~r~~p~~--~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~~~~~~ 421 (917)
..++||||+|||+|++|++||+|+|||+ ++.||+|+||+|||+|+||+++|++++++++|+||||||||++ |
T Consensus 81 ~~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~~~~d~~ELIPEFf~~---P 157 (275)
T cd06071 81 SDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASENPSDVKELIPEFYYL---P 157 (275)
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHccCCCcccCCchHhcC---H
Confidence 3689999999999999999999999986 5899999999999999999999999999999999999999965 5
Q ss_pred ccccccCCCCCccccCCceeCCeecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCccceee
Q psy3053 422 DFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLC 501 (917)
Q Consensus 422 ~fl~n~~~~~~g~~~~~~~~~dv~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~f~~l~ 501 (917)
|||+|.|+++||+ |+|+.|+||+|||||++|.+||++||+||||+|||+|||+||||||||||+|++|++|.|+|+|++
T Consensus 158 e~f~N~n~~~lg~-~~g~~~~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~ 236 (275)
T cd06071 158 EFFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLT 236 (275)
T ss_pred HHHhCCCcccccc-cCCCcccceecCCCcCCHHHHHHHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCcccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCcccChHHHHHHHHHHhhhCCCccccccCCCCCc
Q psy3053 502 YEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542 (917)
Q Consensus 502 yeg~v~~~~i~d~~~r~a~e~~i~~fGQ~P~qLF~~pHP~r 542 (917)
|++.++..... .++.++++++.++||+|.|||.+|||+|
T Consensus 237 Y~~~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 275 (275)
T cd06071 237 YEGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275 (275)
T ss_pred cCCccccchhh--HHHHHHHHHHHhcCCCcchhccCCCCCC
Confidence 99988765543 7889999999999999999999999987
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. |
| >PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-99 Score=795.77 Aligned_cols=266 Identities=59% Similarity=1.030 Sum_probs=195.6
Q ss_pred HHHHHcCCCChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHHHHccC
Q psy3053 267 TLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEM 346 (917)
Q Consensus 267 ~~~w~~~~isnf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~~~~~~ 346 (917)
|++|++|+||||||||.||.+|||||||++||||||||++||+|++|||+|+..||||||||||+|++|+++++++|+++
T Consensus 1 T~~W~~g~iSNfeYL~~LN~~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~ 80 (270)
T PF02138_consen 1 TEKWQNGEISNFEYLMYLNILAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEM 80 (270)
T ss_dssp HHHHHTTSS-HHHHHHHHHHHCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC-
T ss_pred CcchhcCCCcHHHHHHHHhHHhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC--CCcccCCCCCChhhHhhhhcccCch--hHHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccCCCCCcc
Q psy3053 347 PH--PKFLYGSHYSTPGFVLFYLVRKFPQ--YMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGD 422 (917)
Q Consensus 347 ~~--~~~~y~~~ys~~~~v~~~l~r~~p~--~~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~~~~~~~ 422 (917)
.+ ++||||+|||+|++|++||+|+||| +++.||+|+||+|||+|+||+++|++++++++|++|||||||++ ||
T Consensus 81 ~~~~~~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~~~~~d~~EliPEff~~---Pe 157 (270)
T PF02138_consen 81 EEFEPPFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVTENMNDVKELIPEFFYL---PE 157 (270)
T ss_dssp -SSS---SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHHH-TT----B-GGGGT----GG
T ss_pred hccCCCccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhhcCCccccccChhhhCC---HH
Confidence 65 8999999999999999999999998 57899999999999999999999999999999999999999965 59
Q ss_pred cccccCCCCCccccCCceeCCeecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCccceeee
Q psy3053 423 FLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCY 502 (917)
Q Consensus 423 fl~n~~~~~~g~~~~~~~~~dv~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~f~~l~y 502 (917)
||+|.|+|+||+ |+.|+||+||+||++|.+||++||+||||+|||+|||+||||||||||+|++|++|.|+|+|++|
T Consensus 158 ~f~N~n~~~~g~---~~~~~dV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y 234 (270)
T PF02138_consen 158 FFKNINNFDLGK---GEDVDDVELPPWAKSPFEFVYKHRKALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTY 234 (270)
T ss_dssp GGS-TT-SS--B---S-B-SS-B--TT-SSHHHHHHHHHHHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCS
T ss_pred HhcccccccccC---CCccceeecCCccchHHHHHHHHHHHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCC
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccChHHHHHHHHHHhhhCCCccccccCCCCCc
Q psy3053 503 EGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542 (917)
Q Consensus 503 eg~v~~~~i~d~~~r~a~e~~i~~fGQ~P~qLF~~pHP~r 542 (917)
++.+ ..|+.++.+++.++.+|||+|.|||.+|||+|
T Consensus 235 ~~~~----~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 270 (270)
T PF02138_consen 235 EDSW----IEDPMEREAIEAQLKNFGQVPIQLFTKPHPKR 270 (270)
T ss_dssp TTS-------SHHHHHHHHHHHHHC--------SS-----
T ss_pred Cccc----cCCHHHHHHHHHHHHhcCCChHHHhCCCCCCC
Confidence 9987 56799999999999999999999999999987
|
The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C. |
| >KOG1787|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-79 Score=731.22 Aligned_cols=394 Identities=42% Similarity=0.658 Sum_probs=342.7
Q ss_pred ccchhhcccccceEEEEEEEEEeeeeEeceEEEEecCeEEEEeC---CCC---CCceE-------EEEeccccceeeecc
Q psy3053 146 FNLSWLEDLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQPF---NNI---EPHKL-------LKVRLAGIKRIIRRR 212 (917)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~---~~~---~~~~~-------~~~~~~~i~~~~~r~ 212 (917)
++++..++..-...+...+..+. +++..|.+.+++...+|.-. .+. ..+++ .++.+..|..++.|+
T Consensus 325 ~~ek~~~~~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es~~a~~~~~l~~l~~~~~~~~k~~~~~~~a~~~~~ 403 (1126)
T KOG1787|consen 325 RQEKDIENSSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRESPSASKKSLLKPLAYLEELHGKRLLELISAQFLQS 403 (1126)
T ss_pred cccccccccccceeeeccCCccc-eeeeccceeeecchhhhhhhcCchHHHHHhhhHHhcCccccchHHHHHHHHHHHHH
Confidence 33344433333344555566666 78889999999999888311 010 01111 245667899999999
Q ss_pred ccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhCCc---ccc----------cc---c-chhHHHHHHHHcCCC
Q psy3053 213 FLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLDLP---ELQ----------LS---H-SDQEIMTLRWQNGAL 275 (917)
Q Consensus 213 ~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~~~----------~~---~-~~~~~~~~~w~~~~i 275 (917)
|++.++++|+|.... .++.+.|+.+..+++....+.... ... .. + .....+|.+|+.|+|
T Consensus 404 ~~~~~~~~~~~~l~~---t~l~~~~p~~~~v~~~~~~l~~~~v~~~~g~~~~~~~~~~~~~P~qm~k~~~~t~~w~~~~~ 480 (1126)
T KOG1787|consen 404 ILLHNISLDVFPLRR---TSLMFESPSQDAVKRSGLLLPALGVLTSVGLVLPQRRLISAATPVQMAKNSGITQEWQAREI 480 (1126)
T ss_pred HhccchhhhHHHHHh---hhhhhccCCccchhcccccccceeeeeeccccccchhhhhhhCHHHHHHhcCccHHHHhhcc
Confidence 999999999998876 788899998887776544433210 000 00 0 122368999999999
Q ss_pred ChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHHHHccCCC---CCcc
Q psy3053 276 SNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFL 352 (917)
Q Consensus 276 snf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~~~~~~~~---~~~~ 352 (917)
|||+|+|.||+.|||||||++||||||||++||.|+++|++.+.+||||||||||+|+.|...|.+||+.+.+ |.||
T Consensus 481 s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigaln~~~~~~f~dry~s~~D~~i~~~~ 560 (1126)
T KOG1787|consen 481 SNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGALNPKRAYLFRDRYESFEDQAIPSFH 560 (1126)
T ss_pred ccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCCCcccchhHhhhhhccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874 7999
Q ss_pred cCCCCCChhhHhhhhcccCchh--HHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccCCCCCcccccccCCC
Q psy3053 353 YGSHYSTPGFVLFYLVRKFPQY--MLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLENSYGI 430 (917)
Q Consensus 353 y~~~ys~~~~v~~~l~r~~p~~--~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~~~~~~~fl~n~~~~ 430 (917)
||+|||+++.||+||+|+|||+ ++.+|+|||||+||.|+|++..|++|+.+.+|||||||||||+| ++|.|.+..
T Consensus 561 ~~thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l~d~sdvkelipeffy~p---~ll~~~~~~ 637 (1126)
T KOG1787|consen 561 YGTHYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCLRDTSDVKELIPEFFYFP---ELLVNSNLY 637 (1126)
T ss_pred cccccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhccchhhHHHhhhHHHHHH---HHHhccccc
Confidence 9999999999999999999984 78999999999999999999999999999999999999999986 999999999
Q ss_pred CCccccCCceeCCeecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCccceeeeccccccCc
Q psy3053 431 HFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDM 510 (917)
Q Consensus 431 ~~g~~~~~~~~~dv~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~f~~l~yeg~v~~~~ 510 (917)
.+|.+++|++|+||.|||||++|++|+..||+||||+|||+++|.||||||||||+|++|+.|.|+|++++|||.++++.
T Consensus 638 ~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widlifg~Kq~g~ea~~a~nvf~~~tyeG~v~~~~ 717 (1126)
T KOG1787|consen 638 NLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLIFGYKQRGPEAVRAMNVFYYLTYEGAVDLDS 717 (1126)
T ss_pred cceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhhhhHhhcCHHHHHhhhhhccCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHH-HHHHHHHhhhCCCccccccCCCCCccccc
Q psy3053 511 VQDWNQR-HALEVQIMEFGQIPKQIFHSPHPRRTLTS 546 (917)
Q Consensus 511 i~d~~~r-~a~e~~i~~fGQ~P~qLF~~pHP~r~~~~ 546 (917)
+.|+.++ .+++.+|..|||+|.|+|..+||.|....
T Consensus 718 ~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~~~ 754 (1126)
T KOG1787|consen 718 ITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRASES 754 (1126)
T ss_pred cCChhHHHHHHHHHHhhccccchhhhhhccCCcchhc
Confidence 9999999 79999999999999999999999996543
|
|
| >KOG1786|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=545.84 Aligned_cols=339 Identities=37% Similarity=0.549 Sum_probs=309.4
Q ss_pred eccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhCCcc--ccc--------------------
Q psy3053 201 RLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLDLPE--LQL-------------------- 258 (917)
Q Consensus 201 ~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~~~-------------------- 258 (917)
....+..+++|.++++..|+++|-..+ ...-+.++ ...|+.+++.+..... ...
T Consensus 254 ~~~~~~~~~~r~~l~~~~~~~~~~~~~---~~~~~~~~-~~i~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 329 (1081)
T KOG1786|consen 254 DAFLISLVLKRLVLLRLIALSVFSSLG---RVTLLVLP-KLIRKSLFDKLLAHPSRENSSGLLELCLRFPMLLSGGFRLL 329 (1081)
T ss_pred hhhhhhhHHHHHHHhhhhHHHhhhccc---ceeecccc-hhHHhhhhhhhhccCccccchhhhhhcchhhhhhhcccccc
Confidence 557788899999999999999999887 45556665 5578888888764431 100
Q ss_pred ccc-hhHHHHHHHHcCCCChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHH
Q psy3053 259 SHS-DQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLE 337 (917)
Q Consensus 259 ~~~-~~~~~~~~w~~~~isnf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~ 337 (917)
... .....+.+|.+|+++||+|||+||++|||+++|++|||||||++.+|+++.+|+.||.++|++.||+|++++++.+
T Consensus 330 ~~~~~~~s~~~~W~~~~~~n~~yl~~ln~l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~ 409 (1081)
T KOG1786|consen 330 SRFKSLKSAFGRWLSGELENFQYLMHLNTLAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYE 409 (1081)
T ss_pred chhhhhhhhhcccccCchhhhhhhhhcCcccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHH
Confidence 000 1367899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCC-----CcccCCCCCChhhHhhhhcccCc--hhHHHHhcCCCCCCCCccccHHHHHHHhc-cC-CCCcc
Q psy3053 338 RLKERYNEMPHP-----KFLYGSHYSTPGFVLFYLVRKFP--QYMLCLQNGRFDHPDRMFNSIPDIWRNVL-TN-MSDFK 408 (917)
Q Consensus 338 ~~~~~~~~~~~~-----~~~y~~~ys~~~~v~~~l~r~~p--~~~~~~q~g~fd~~~r~f~si~~~~~~~~-~~-~~d~~ 408 (917)
.+..||+++.+| .|||++||++|.+|+.|++|.+| .+.+++|.|.|+.+||+|+|..++|.++. .+ .+|++
T Consensus 410 ~~~~r~~~~~d~~~~~~~~~~~t~~~S~~~~~~y~~r~~p~~~~~~~i~~~~~~~~d~~~~s~~~~Wt~~~~~~~~~~i~ 489 (1081)
T KOG1786|consen 410 RFAKRFEEWLDQNAEDPLFHVLTHLLSPLIVMSYFARKNPLSELFLSIRRGYFPIADRLFHSRMQAWTPDEKGNLHSCIK 489 (1081)
T ss_pred HHhhhhhhhhccccccccccccccccchhhhhhhhhhcCcchHHHHHhhcccccccchhhhhhhcccCcccccccchhHH
Confidence 999999998764 99999999999999999999999 67899999999999999999999999875 23 37999
Q ss_pred cccccccCCCCCcccccccCCCCCccccCCceeCCeecCCCCCC-hHHHHHHHHHHhcchhhhhccccceeeh-hccccc
Q psy3053 409 ELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAEC-PEVFVTKLRQALESDIVSRQLHLWIDLI-FGYKQR 486 (917)
Q Consensus 409 elipef~~~~~~~~fl~n~~~~~~g~~~~~~~~~dv~lp~wa~~-~~~fv~~~r~ales~~vs~~l~~WIDli-fG~kq~ 486 (917)
|||||||+. |+||.|.++++||.+|+|..++||.|||||.+ |++|+++||+|||++|||++||||||++ |||||.
T Consensus 490 eli~~~~~~---p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale~~~vs~~Lh~wId~~~fgykq~ 566 (1081)
T KOG1786|consen 490 ELIPKFVND---PSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALESNRVSQRLHHWIDLTIFGYKQN 566 (1081)
T ss_pred HHHHHhccC---hHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhcccccchhhccccceeeehhhhhhc
Confidence 999999965 59999999999999999999999999999995 9999999999999999999999999999 999999
Q ss_pred ChHHHhccCccc----eeeeccccccCcccChHHHHHHHHHHhhhCCCccccccCCCCCccccc
Q psy3053 487 GVEAEKADNLFY----YLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTS 546 (917)
Q Consensus 487 g~~a~~a~N~f~----~l~yeg~v~~~~i~d~~~r~a~e~~i~~fGQ~P~qLF~~pHP~r~~~~ 546 (917)
|.+|+.+.|||+ +++|++.++.+.+.|+....++..++.+|||.|+|+|..+|+.+.+..
T Consensus 567 g~~~~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~~~~~~~ 630 (1081)
T KOG1786|consen 567 GSAAVIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHSVSELTE 630 (1081)
T ss_pred chHHHHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhcccccccccccch
Confidence 999999999999 999999999999999999999999999999999999999999987764
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=383.03 Aligned_cols=326 Identities=20% Similarity=0.321 Sum_probs=296.1
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
+...+.||.++|.|++|+|+|..|+||+.|.++++||+.+..+..+.++|..-|.|++|+|||+.||+|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeee-EEeccCCCceeEEEecC-----CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 652 ECGRIV-TELAGHEDAISCVAWDE-----KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 652 ~tg~~i-~~l~~H~~~Vt~l~~sp-----d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
.+|+++ ..+.+|...|++++|.| ..++|+++|.||+|+|||+..+ .+.....+|..+|+|+.|--+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-------~~~~~lsgHT~~VTCvrwGG~- 258 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-------TCVRTLSGHTASVTCVRWGGE- 258 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------eEEEEeccCccceEEEEEcCC-
Confidence 998764 67899999999999976 5679999999999999999766 466778899999999999754
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEe-----------cCC-------------------------C
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFS-----------EDG-------------------------C 769 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fs-----------pdg-------------------------~ 769 (917)
.++++|+.|++|++|+...|.+.+.+. +|...|+.++.+ |.+ .
T Consensus 259 gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred ceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 589999999999999999999999998 999999999887 223 3
Q ss_pred EEEEEeCCCeEEEEECCCCe-EEE-EeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee
Q psy3053 770 RVLSCGNNCMLNVYDLTTGM-QVC-NKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF 846 (917)
Q Consensus 770 ~L~s~s~Dg~I~iwDl~tg~-~i~-~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~ 846 (917)
.+++|+.|.++.+|+....+ ++. ...|..-|+.+.++|++. +++++.|..|++||.++|+.+.++++|-++|..+++
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 59999999999999975433 443 345667799999999876 567899999999999999999999999999999965
Q ss_pred --cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 847 --DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 847 --dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
|.++|++|+.|.++++|++++.++...+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 788999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=347.48 Aligned_cols=293 Identities=21% Similarity=0.331 Sum_probs=263.2
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
++..++.+|..+|.|+.|+|+|..||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeC-----CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISK-----DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED 767 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd 767 (917)
..++. .....+.+|...|++++|.| ..+.+|+++.||.++|||+..+.++..+. +|..+|+|+.|--+
T Consensus 186 pktg~------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 186 PKTGQ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGE 258 (480)
T ss_pred CCCCC------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCC
Confidence 88773 23344678999999999976 56899999999999999999999999998 99999999999877
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEe-------------CC------------------------C
Q psy3053 768 GCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWA-------------GE------------------------E 809 (917)
Q Consensus 768 g~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s-------------~~------------------------~ 809 (917)
| ++++++.|++|++|+...|.....+. |...|+.++.+ +. .
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 6 89999999999999999887765543 44556666554 11 2
Q ss_pred EEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 810 KVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
.+++|+.|+++.+|+.... +++..+.+|..-|..+ +||++++|+++-|.+|++|+-++|+.+.++.||-++|..++|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 5999999999999998655 4888999999999988 889999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCcceEE
Q psy3053 887 DEKRKRLISGNLVGAPKLYATEFYLLY 913 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl~~~ll~ 913 (917)
|.|.++|++|+.|.+++||++.++.+.
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeec
Confidence 999999999999999999999987654
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=349.67 Aligned_cols=282 Identities=18% Similarity=0.252 Sum_probs=264.8
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCC--CCEEEEEecccEEEEEEeccC
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
-+-+.+|..+.||.|++.|+|||.+|.+++|+..+...++++.+|...|.++.|+|. +..+|+|+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 466789999999999999999999999999999999999999999999999999997 569999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
..++.+.+|...|..++|+|+|++|+|+|.|.+-++||++++ ..+....+|...|.+++|++||.++++|+.|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-------~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-------SELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-------hhhHhhcccccccceeEecCCCceeeccCcc
Confidence 999999999999999999999999999999999999999887 4666678999999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILG 814 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~g 814 (917)
..-+|||+++|+++..+. +|..+|.+|+|+|+|..+++|+.|++++|||++...
T Consensus 325 ~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------------------------- 378 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------------------------- 378 (459)
T ss_pred chhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccc-------------------------
Confidence 999999999999999998 799999999999999999999999999999987543
Q ss_pred eCCCeEEEEECCCCEEEEEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC
Q psy3053 815 GALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 815 s~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~ 891 (917)
.+.++.+|.+-|+.+ +| .|.+|++++.|++++||...++.+++.+.||.+.|-+++.++|+.
T Consensus 379 ---------------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 379 ---------------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQ 443 (459)
T ss_pred ---------------cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCc
Confidence 345677888888888 44 688999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q psy3053 892 RLISGNLVGAPKLYA 906 (917)
Q Consensus 892 ~LaSgs~DG~V~IWd 906 (917)
.++|++.|.++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=310.52 Aligned_cols=289 Identities=19% Similarity=0.294 Sum_probs=263.2
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+..++++||.+.|.++.|++|+++|+++|.||.+.|||.-+....+.+.....-|..|+|+|.|+.+|+|+-|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC------eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-
Q psy3053 651 VECG------RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK- 723 (917)
Q Consensus 651 l~tg------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 723 (917)
+.+. +..+.+.+|++-++|+.|-+ ...|+|+|.|.++.+||++++ .......+|.+.|.+++++|
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g-------~~~~~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG-------QQTQVFHGHTGDVMSLSLSPS 197 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc-------eEEEEecCCcccEEEEecCCC
Confidence 9865 45677899999999999987 568999999999999999988 45666789999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEE
Q psy3053 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCL 803 (917)
Q Consensus 724 dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l 803 (917)
+++.+++|+.|+..++||++.+..++.+. +|...|++++|.|+|.-+++|+.|++.++||++..+.+..+.+.
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~------ 270 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD------ 270 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC------
Confidence 99999999999999999999999999998 99999999999999999999999999999999987765443321
Q ss_pred EEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE
Q psy3053 804 SWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881 (917)
Q Consensus 804 ~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V 881 (917)
.-..+|+++ +..|++|++|..|.++.+||.-.++.+..+.+|.++|
T Consensus 271 --------------------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv 318 (343)
T KOG0286|consen 271 --------------------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV 318 (343)
T ss_pred --------------------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee
Confidence 123455666 4479999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 882 SCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+++..+|||..++||+.|.+++||.
T Consensus 319 Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999994
|
|
| >KOG1786|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=411.04 Aligned_cols=204 Identities=46% Similarity=0.824 Sum_probs=186.0
Q ss_pred hHHHHHHHHcCCCChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHHH
Q psy3053 263 QEIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKER 342 (917)
Q Consensus 263 ~~~~~~~w~~~~isnf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~~ 342 (917)
....|.+|..|.++||+||+.+|.+|||||||++||||||||++||.++.+||.+..+||||++|||++ . +.+.+.
T Consensus 872 ~~a~~~~~~~~~~~n~~y~~~~~~~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~~a~~-~---~~~~~~ 947 (1081)
T KOG1786|consen 872 LLAITNTWEEGLISNFEYLTMLNLLAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRPIAVQ-K---EKLEEH 947 (1081)
T ss_pred hhhhhhhhccccccchHHHHHHHHhhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccchhHH-H---HHHhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999933 2 222222
Q ss_pred HccCC---CCCcccCCCCCChhhHhhhhcccCch--hHHHHhcCCCCCCCCccccHHHHHHHh-ccCCCCcccccccccC
Q psy3053 343 YNEMP---HPKFLYGSHYSTPGFVLFYLVRKFPQ--YMLCLQNGRFDHPDRMFNSIPDIWRNV-LTNMSDFKELVPEFYD 416 (917)
Q Consensus 343 ~~~~~---~~~~~y~~~ys~~~~v~~~l~r~~p~--~~~~~q~g~fd~~~r~f~si~~~~~~~-~~~~~d~~elipef~~ 416 (917)
..++ ..+||||+|||+|+.|.+|++|+.|| +++.+|+|.||-|||.|+|+..+|... .++++|+|||+| |||
T Consensus 948 -~~~~~e~~~~~~~~~~~s~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~dr~f~~l~~~~~~~~~~s~td~kel~p-~f~ 1025 (1081)
T KOG1786|consen 948 -HSWESEDTEPYHYGSHYSNSGTVSHFLIRLPPFTEMFLSLQDGRFDFPDRLFHSLETAWSLASIESSTDVKELIP-FFY 1025 (1081)
T ss_pred -hhhhhhccCCccccccccCccccccccccCCchHHHHHHhccCcCCCcccccccccccccccccccccchhhccc-ccc
Confidence 2222 47899999999999999999999997 589999999999999999999999987 479999999999 998
Q ss_pred CCCCcccccccCCCCCccccCCceeCCeecCCCCCChHHHHHHHHHHhcchhhhhcccccee
Q psy3053 417 TEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWID 478 (917)
Q Consensus 417 ~~~~~~fl~n~~~~~~g~~~~~~~~~dv~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WID 478 (917)
.| |||.|.+.++||.+|+|++|+||.+ -.+|+.|+++||.||||++|+.++|+|||
T Consensus 1026 ~p---e~l~n~~~~d~g~~qn~~~~~~~~~---~~~~~~~i~~hr~al~s~~v~~~~~~~i~ 1081 (1081)
T KOG1786|consen 1026 LP---EFLRNRNGFDFGERQNGERVNDVVL---RGDPRSFILIHRQALESEYVSSNLHTWID 1081 (1081)
T ss_pred Cc---ceeecCCccccCcccCCCcccceee---ccchHHHHHHHHHhhhcccccccceeccC
Confidence 75 9999999999999999999999999 44599999999999999999999999997
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=300.75 Aligned_cols=299 Identities=19% Similarity=0.284 Sum_probs=256.2
Q ss_pred ccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEecc-----CCceeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLK-----TGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~-----t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
+....++++|++.|++++..+.+ ..+++++.|.++.+|++. .|..++.+.+|+..|..++.++||++.+++++|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 34557899999999999999874 688999999999999975 467789999999999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc--CCCceEEEEE
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD--LDNRIKCLAI 721 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~--h~~~V~~l~~ 721 (917)
+++++||+.+|+..+.+.||...|.+++|++|.+.++|||.|.+|++|++-.. +...... +.+.|+|+.|
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--------ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--------CKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--------EEEEEecCCCcCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999998665 2222222 3788999999
Q ss_pred eCC--CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCc
Q psy3053 722 SKD--NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 722 spd--g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~ 799 (917)
+|+ ..+|++++.|++|++||+++.+....+. +|.+.++.+++||||..+++|+.||.+.+||++.++.+..+.+...
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~ 235 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI 235 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe
Confidence 998 6899999999999999999998888887 8999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC
Q psy3053 800 LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 800 i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
|.+++|+|+.+.++...+..|++||+.++..+..+..... |. ..+....
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~--------g~-----------------------s~~~~~~ 284 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI--------GP-----------------------SSKAGDP 284 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc--------cc-----------------------ccccCCc
Confidence 9999999998888777777788888877776655532100 00 0111122
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
...+++||+||..|++|-.|+.|++|.+.
T Consensus 285 ~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 285 ICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 34567888888888888888888888764
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=300.34 Aligned_cols=329 Identities=16% Similarity=0.229 Sum_probs=294.8
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
.+..|..|+++|.+++.+|+.++++||+.|..-.+|+..+|.....+.+|...|+++.|+.||.+||+|+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
.++.....+..--+.+.-+.|+|.+..|+.|+.||.+-+|.+.+. .......+|..+++|-.|.|+|+.+++|
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------~~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------ALCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-------ceeeEecCCCCCcccccccCCCceEEEE
Confidence 999998888767778889999999999999999999999999764 3555677899999999999999999999
Q ss_pred ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---------cCCceEE
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV---------FEEKLLC 802 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~---------~~~~i~~ 802 (917)
..||+|++|++.+++++..+.........++.++..+..++.|+.++.+++-+..+|+.+.... ....+.|
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999999886667788899999999999999999999999998888775543 2233445
Q ss_pred EEEeCC----CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecC-CEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 803 LSWAGE----EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDN-CTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 803 l~~s~~----~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg-~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
+.+.|. ...++|+-||+|.+||+...++.... .|..+|+.+.|.+ .+|++++.+|.|+.||.++|+++.++.||
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecC
Confidence 544432 23668999999999999887665544 4888899998866 88999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 878 EDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
..+|.+++.+|++++++|+|.|++.+||++.
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999875
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=286.97 Aligned_cols=275 Identities=18% Similarity=0.302 Sum_probs=247.4
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEE
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCV 670 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l 670 (917)
-+|+|+|.|.+|++|.+.+|.+.+++......|..+.+.||++.||+|+. ..|++||+.++. ++.++.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47899999999999999999999999999999999999999999999875 569999999875 588999999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEE
Q psy3053 671 AWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750 (917)
Q Consensus 671 ~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~ 750 (917)
.|..+|+.++|||.||+++|||++.. .......+.++|+++..+|+...|++|..+|.|++||+....+...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~--------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL--------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc--------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 99999999999999999999999874 4445667889999999999999999999999999999999888888
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 751 l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
+.+.....|.+++..|||..++.+...|.+++|++-+++.. ....+
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------------------------------s~l~P 207 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------------------------------SELEP 207 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc----------------------------------ccceE
Confidence 77677789999999999999999999999999998763221 12356
Q ss_pred EEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 831 LKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 831 i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg-~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+..++.|.+.+..+ +||+++||++|.|.+++||+.++. +....+.+|...++.++||.||.+|+||+.|+.+++|++
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 66788898888766 999999999999999999999987 666788999999999999999999999999999999999
Q ss_pred Ccc
Q psy3053 908 EFY 910 (917)
Q Consensus 908 ~~~ 910 (917)
+..
T Consensus 288 ~~~ 290 (311)
T KOG0315|consen 288 SAG 290 (311)
T ss_pred ccC
Confidence 754
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=318.14 Aligned_cols=347 Identities=21% Similarity=0.301 Sum_probs=290.3
Q ss_pred ccccCCccccceeeecc-CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCC--EEE
Q psy3053 562 NSWCDKSILEPLHFCHS-HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC--TML 638 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~-H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~--~La 638 (917)
++|.-.++ +.+..+++ |++||..++|+|.|..+++|+.||.++|||+..+.+...+.+|.+.|+++.|.|+-. .|+
T Consensus 87 rv~~L~tg-k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~ 165 (775)
T KOG0319|consen 87 RVWSLPTG-KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLA 165 (775)
T ss_pred EEEEcccc-hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhhee
Confidence 35554333 66777777 999999999999999999999999999999999999999999999999999999754 589
Q ss_pred EEecccEEEEEEeccCee-eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC------------------
Q psy3053 639 VGCWDSCVVIYDVECGRI-VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH------------------ 699 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~-i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~------------------ 699 (917)
+|..|+.+++||+.+... +..+..|.+.|+++++++|+..++++|+|..+.+||+.+....
T Consensus 166 sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~ 245 (775)
T KOG0319|consen 166 SGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREE 245 (775)
T ss_pred ecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechh
Confidence 999999999999996654 7888899999999999999999999999999999996321000
Q ss_pred -------------------------------ccC-C--------------------------------------------
Q psy3053 700 -------------------------------MKP-S-------------------------------------------- 703 (917)
Q Consensus 700 -------------------------------~~~-~-------------------------------------------- 703 (917)
..+ .
T Consensus 246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 000 0
Q ss_pred ------------------------------cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee----eE
Q psy3053 704 ------------------------------KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM----TQ 749 (917)
Q Consensus 704 ------------------------------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~----~~ 749 (917)
.......+|...|.+++...+|.++++|+.|.++++|.++++.. +.
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 01112245667777777666788999999999999998854432 22
Q ss_pred EecCCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeEE----------EEeecCCceEEEEEeCCCE-EEEEeCC
Q psy3053 750 QLSDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQV----------CNKVFEEKLLCLSWAGEEK-VILGGAL 817 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~i----------~~~~~~~~i~~l~~s~~~~-lv~gs~d 817 (917)
.. .+|.+.|.+++++..+ .++++++.|+++++|++...+.. ....|+..|+|++.+|+.. +++|+.|
T Consensus 406 ~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 406 QA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hh-cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 33 3899999999997744 57899999999999999762211 1123677899999998765 6688999
Q ss_pred CeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q psy3053 818 GMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 818 G~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaS 895 (917)
.+.++|++.++....++.||...|.|+++ ..+.++++|.|++|+||.+++..+++++.||+..|..+.|-.+|+.|+|
T Consensus 485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe
Confidence 99999999999999999999999999965 5679999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCcc
Q psy3053 896 GNLVGAPKLYATEFY 910 (917)
Q Consensus 896 gs~DG~V~IWdl~~~ 910 (917)
++.||.+++|++++.
T Consensus 565 ~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 565 AGADGLIKLWNIKTN 579 (775)
T ss_pred ccCCCcEEEEeccch
Confidence 999999999999854
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=306.05 Aligned_cols=328 Identities=19% Similarity=0.286 Sum_probs=286.7
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC-----------------------Cce-----e------eee
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT-----------------------GRQ-----E------RSA 618 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t-----------------------~~~-----~------~~~ 618 (917)
.+.+.+|++.|.++-|..+...++|.+.||.+.+|.... ++. . .-+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 356889999999999999999999999999999998761 111 0 001
Q ss_pred eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCC
Q psy3053 619 VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASW 697 (917)
Q Consensus 619 ~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~ 697 (917)
......|++++|++..+.||+|-..|...+|.+..-.+++.+.-...+|..++|+..|..|+.|+.. |.+-||+..+.
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE- 340 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE- 340 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-
Confidence 1123678999999999999999999999999999999999998888899999999999999998765 89999998765
Q ss_pred CCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC
Q psy3053 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D 777 (917)
.-+....+|...++|++++|||+++|+|+.||.|++||..++-+..++. .|...|+.+.|+..|+.+++++-|
T Consensus 341 ------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 341 ------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecC
Confidence 3455678899999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEeecCCc--eEEEEEeCCCEEEEEeCC--CeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 778 CMLNVYDLTTGMQVCNKVFEEK--LLCLSWAGEEKVILGGAL--GMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~~~~~--i~~l~~s~~~~lv~gs~d--G~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
|+|+.||+.......++..+.+ ..|++.+|.|.+++++.. =.|.+|++.+|+.+..+.||.++|.++ +|++..|
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence 9999999999998888887765 578888888777665544 369999999999999999999999975 7799999
Q ss_pred EEEeCCCeEEEEECcCCe-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 852 LVGCWDSCVVIYDVECGR-IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~-~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++|+.|.+|++||+-... .+.++. +...+.+++|+|||+.|++++.||.|.+||++.
T Consensus 494 aS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred EeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 999999999999985443 344444 677899999999999999999999999999973
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=300.10 Aligned_cols=385 Identities=19% Similarity=0.250 Sum_probs=304.5
Q ss_pred HHHHHHHHhhhCCCccccccCCCCCccccccccccccccccccccccccCCccccceeeeccCCcceEEEEEeCCCc-EE
Q psy3053 517 RHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGI-SV 595 (917)
Q Consensus 517 r~a~e~~i~~fGQ~P~qLF~~pHP~r~~~~~~~~~~~~~~f~d~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~-~L 595 (917)
.+.++.+..-|..--+.|-+.+.-+|+.+...--.+.... -.|+.-+. +..+.||...|.+++|-|... ++
T Consensus 92 ~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~-----F~~DSG~S---vGei~GhSr~ins~~~KpsRPfRi 163 (603)
T KOG0318|consen 92 EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV-----FLWDSGNS---VGEITGHSRRINSVDFKPSRPFRI 163 (603)
T ss_pred ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE-----EEecCCCc---cceeeccceeEeeeeccCCCceEE
Confidence 4444444444444345566677777765432221111111 25775543 567899999999999999875 69
Q ss_pred EEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec---cCCCceeEEEe
Q psy3053 596 ASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA---GHEDAISCVAW 672 (917)
Q Consensus 596 asgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~---~H~~~Vt~l~~ 672 (917)
+||+.|++|.+|.-..-+...+...|..-|.|+.++|||..+|+++.||++.+||-.+|+.+..+. +|.+.|.+++|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 999999999999987777778888899999999999999999999999999999999999999998 89999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCCCCc------------------------------------cCCcceeeeccCCCce
Q psy3053 673 DEKRKRLISGSWDCTVRVWNTGASWSHM------------------------------------KPSKSLVSQLDLDNRI 716 (917)
Q Consensus 673 spd~~~L~Sgs~DgtI~vWdl~~~~~~~------------------------------------~~~~~~~~~~~h~~~V 716 (917)
+||+..++|+|.|.+++|||+.+..... ..........+|...|
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI 323 (603)
T ss_pred CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence 9999999999999999999987653100 0001223456899999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE------
Q psy3053 717 KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ------ 790 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~------ 790 (917)
++++.++++++|.+|+.||.|.-|+..++..-+.....|...|.+++.+..+ .+.+++.|.++++.++..+..
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCccccccee
Confidence 9999999999999999999999999999987776655899999999988655 577888888999997642210
Q ss_pred ------EE----------------------------EeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEE--EEE
Q psy3053 791 ------VC----------------------------NKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQL--LKQ 833 (917)
Q Consensus 791 ------i~----------------------------~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~--i~~ 833 (917)
.. .....-...++++++++ .+++|+.||.|++|.+..+.. ...
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee
Confidence 00 00011224567777654 578899999999999987653 334
Q ss_pred EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 834 VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 834 l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~-~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
...|.++|+++ +||+.+||+|...+.+.+||+.+.+... .+.-|++.|.+++|+|+..++|||+.|..|.||+++..
T Consensus 483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 56799999999 7899999999999999999999888743 34459999999999999999999999999999999754
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=306.10 Aligned_cols=259 Identities=17% Similarity=0.270 Sum_probs=233.8
Q ss_pred cccccccccCCccccceeeeccCCcceEEEEEeCC--CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCC
Q psy3053 557 LSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGE--GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN 634 (917)
Q Consensus 557 f~d~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~ 634 (917)
+.....+|+.... ..++++.||++.|.++.|+|. +..+|||+.||++++|++.+...+..+.+|...|..++|+|+|
T Consensus 195 wsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 195 WSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred cCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 4455568886554 788999999999999999997 5689999999999999999999999999999999999999999
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
++|++++.|.+-++||++++..+....||...|.+++|.+||..++|||.|..-+|||++++ .+...+.+|..
T Consensus 274 ~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-------r~im~L~gH~k 346 (459)
T KOG0272|consen 274 KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-------RCIMFLAGHIK 346 (459)
T ss_pred ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC-------cEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998 56777889999
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy3053 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~ 793 (917)
+|.+++|+|+|-.+|+|+.|++++|||++..+.+.++. +|.+-|+.|.|+| .|.+|++++.|+++++|...+.
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~----- 420 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW----- 420 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCc-----
Confidence 99999999999999999999999999999999988888 9999999999998 7888889998888888876654
Q ss_pred eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEE
Q psy3053 794 KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 794 ~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwd 864 (917)
.+++++.||.+.|.++ ++|++.+++++.|.++++|.
T Consensus 421 -----------------------------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 -----------------------------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----------------------------------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 4456667788888777 67888888888888888884
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=312.87 Aligned_cols=368 Identities=17% Similarity=0.237 Sum_probs=287.6
Q ss_pred CCCccccccCCCCCccccccccccccccccccccccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEE
Q psy3053 528 GQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIH 607 (917)
Q Consensus 528 GQ~P~qLF~~pHP~r~~~~~~~~~~~~~~f~d~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IW 607 (917)
|.+-..+...||+.+..-... ..+...++|+-...-.+++.+..|.+.|+++++++|+..++++|.|..+.+|
T Consensus 147 gGvVssl~F~~~~~~~lL~sg-------~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASG-------ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred CceEEEEEeCCccchhheeec-------CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 455556666677766221111 1122336898776666789999999999999999999999999999999999
Q ss_pred eccCCceeeeeeccccceEEEEEeC-------------------------------------------------------
Q psy3053 608 SLKTGRQERSAVLSSMTLSSLCILP------------------------------------------------------- 632 (917)
Q Consensus 608 d~~t~~~~~~~~~~~~~V~sl~~sp------------------------------------------------------- 632 (917)
|+.+.+..+.+... ..+-++.+.+
T Consensus 220 d~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred ehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 99665444333221 1222233333
Q ss_pred ------------------------------------CCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCC
Q psy3053 633 ------------------------------------DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 676 (917)
Q Consensus 633 ------------------------------------d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~ 676 (917)
+.+++|+++..+.+++|++.+..+. .+.||++.|.++....+|
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccC
Confidence 3334444444444444444333322 456899999999966677
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeee-----E-
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMT-----Q- 749 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~-----~- 749 (917)
.+|+|||.|.++++|.++.+... ........+|.+.|.+++++..+ ..+++++.|+++++|++...+.. .
T Consensus 378 ~llat~sKD~svilWr~~~~~~~---~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSK---SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred cEEEEecCCceEEEEEecCCcch---hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 89999999999999988544211 22344467899999999997765 78999999999999999762211 1
Q ss_pred --EecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEEC
Q psy3053 750 --QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDL 825 (917)
Q Consensus 750 --~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl 825 (917)
.....|...|++++++|+.+.+++|+.|.+.++|++..+.....+. |...+.|+.|++.. .+++++.|++|++|.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 1123689999999999999999999999999999999887776654 66789999999854 5778999999999999
Q ss_pred CCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3053 826 IQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPK 903 (917)
Q Consensus 826 ~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~ 903 (917)
.++.+++++.||...|..+++ +|..|++++.||-|++|+++++.++.++.+|.+.|++++-+|.+.+++||+.||.|.
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence 999999999999999999977 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q psy3053 904 LYAT 907 (917)
Q Consensus 904 IWdl 907 (917)
+|.=
T Consensus 615 ~wkD 618 (775)
T KOG0319|consen 615 FWKD 618 (775)
T ss_pred Eeec
Confidence 9964
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=288.54 Aligned_cols=285 Identities=27% Similarity=0.459 Sum_probs=249.6
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
..+++|.++|++++|+|+++.+++++.||.+++|++.+++.......|...+..+.|+|+++.+++++.||.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888888888988999999999999999999999999999999
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
++....+..|...|.+++|++++.++++++.||.|.+||+.+. ........|...+.+++++|++.++++++.
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-------KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-------EEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence 8888889999999999999999889998888999999999754 223334467889999999999999998888
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~ 813 (917)
+|.+.+||+++++....+. .+...+.+++|+|+++.+++++.++.+++||+.+++.+
T Consensus 156 ~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---------------------- 212 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL---------------------- 212 (289)
T ss_pred CCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee----------------------
Confidence 9999999999888888877 77889999999999989998888988999988764433
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~ 891 (917)
..+..|...+.++ ++++.++++++.||.|++|++.+++....+.+|...|.+++|+|++.
T Consensus 213 ------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 213 ------------------GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274 (289)
T ss_pred ------------------cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC
Confidence 2233455566666 34567777777799999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q psy3053 892 RLISGNLVGAPKLYA 906 (917)
Q Consensus 892 ~LaSgs~DG~V~IWd 906 (917)
.|++++.||.|++|+
T Consensus 275 ~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 RLASGSADGTIRIWD 289 (289)
T ss_pred EEEEecCCCeEEecC
Confidence 999999999999996
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=291.99 Aligned_cols=323 Identities=17% Similarity=0.263 Sum_probs=276.7
Q ss_pred eeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCC--ceee------e------eeccccceEEEEEeCCCCEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTG--RQER------S------AVLSSMTLSSLCILPDNCTML 638 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~--~~~~------~------~~~~~~~V~sl~~spd~~~La 638 (917)
..+. |+.+|.+.+|+|-.. .+++|+.|.+.++|++... .... . -...+..|++++|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3344 999999999999776 8999999999999998641 1110 0 011346799999999999999
Q ss_pred EEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
+|+.||.+++|+.. |..+.++..|.++|.++.|+.+|++|++++.|+++.+||..++ .......-|..+...
T Consensus 252 tG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-------~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 252 TGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-------TVKQQFEFHSAPALD 323 (524)
T ss_pred EeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-------eEEEeeeeccCCccc
Confidence 99999999999976 7778889999999999999999999999999999999998776 122233345555567
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE-eecC
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN-KVFE 797 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~-~~~~ 797 (917)
+.|-.+ ..+++++.||.|+++.+....++.++. +|.++|.++.|+|.|.+|++++.|++++||+......... ..|.
T Consensus 324 VdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 324 VDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred eEEecC-ceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 788654 568889999999999999999999999 6999999999999999999999999999999876655544 3466
Q ss_pred CceEEEEEeCC----------CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 798 EKLLCLSWAGE----------EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 798 ~~i~~l~~s~~----------~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
..|..+.|+|. ..+++++.|++|++||+..+.++..+..|..+|.++ +|+|+++|+|+.||.|.+|+.
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 67888888863 258899999999999999999999999999999999 668999999999999999999
Q ss_pred cCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 866 ECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 866 ~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++++..+...+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 482 ~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999885 4569999999999999999999999998864
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=290.22 Aligned_cols=310 Identities=16% Similarity=0.247 Sum_probs=276.1
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW 642 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~ 642 (917)
.|-+.+. ..+.+.+|..+|+.+-|.|+-..+++++.|++|++||..+|+..+.+++|..++.+++|+..|+++|+++.
T Consensus 93 ~wipRp~--l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 93 LWIPRPN--LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hcCCCCC--chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC
Confidence 3544433 34667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEecc-CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 643 DSCVVIYDVEC-GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 643 Dg~I~Iwdl~t-g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
|-.+++||.++ -++++.+.+|...|.+++|-|.|.+++++++|.+|+.|++.++ .+.....+|...|..++.
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-------~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-------YCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-------eeEEeccCchHhEEEEEe
Confidence 99999999987 5778888999999999999999999999999999999999988 567778899999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
+.||.++|+++.|.++++|-+.++++...+. .|..+|.+++|.|...+ +... + .++..
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~--~~i~-------~-at~~~----------- 301 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSY--PSIS-------E-ATGST----------- 301 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccC--cchh-------h-ccCCC-----------
Confidence 9999999999999999999999998888887 89999999999986431 1000 0 00000
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
++...+.+++.|++|++||+.++.++.++.+|...|..+ +|.|++|+++.+|+++++||++++++..++..|..
T Consensus 302 ----~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h 377 (406)
T KOG0295|consen 302 ----NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH 377 (406)
T ss_pred ----CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc
Confidence 022378889999999999999999999999999999988 55799999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
-|++++|+.+..+++||+.|.++++|.-
T Consensus 378 fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 378 FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999973
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=287.39 Aligned_cols=289 Identities=18% Similarity=0.300 Sum_probs=251.5
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+..+.+++|.+.|.|+++.|...+++||+.|++++|||+.+|+...++.+|-..|..+++++-..++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
++..+.++.+.||-+.|.|++.+|.-..|+||++|.++++||+++. ..+....+|..+|..+.+.|....+++
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-------~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-------ASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-------ceEEEecCCCCcceeEEeecCCCceEE
Confidence 9999999999999999999999999999999999999999999886 466677899999999999998899999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
|+.|++|++||++.|+....+. .|...|.+++.+|....+++++.| .++-|++..|
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~d-nik~w~~p~g---------------------- 350 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG---------------------- 350 (460)
T ss_pred ecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCc-cceeccCCcc----------------------
Confidence 9999999999999999998888 889999999999998888888877 3566665544
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee-cCCEEEEEeCCCeEEEEECcCCeEEEEec-----C---CCCCE
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDVECGRIVTELA-----G---HEDAI 881 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~-----~---h~~~V 881 (917)
..+..+.+|.+-|.+++. +..++++|++.|.+..||.++|-..+... | ....|
T Consensus 351 ------------------~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI 412 (460)
T KOG0285|consen 351 ------------------EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI 412 (460)
T ss_pred ------------------chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence 344445566666666643 45567777777777777777765443331 1 24568
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 882 SCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.+|...|..|+||..|.+|++|.-+
T Consensus 413 ~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 413 FASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eEEeecccCceEEeccCCcceEEEecc
Confidence 999999999999999999999999864
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=295.84 Aligned_cols=330 Identities=16% Similarity=0.220 Sum_probs=290.7
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc-cEEEEEEeccCeeeE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD-SCVVIYDVECGRIVT 658 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D-g~I~Iwdl~tg~~i~ 658 (917)
...|+|.+|++..+.|++|-..|...+|.+.+-..++.+.....+|..++|+..|.+||.|+.. |.+-||++.+...+.
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence 3689999999999999999999999999999999999999999999999999999999998874 899999999999999
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
..++|...+++++++|||+++|||+.||.|+|||..++ .+..+...|.+.|+.+.|+..|+.+++++-||+|+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 99999999999999999999999999999999999876 68888999999999999999999999999999999
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCeEEEEe-ecCCceEEEEEeCCC-EEEEEe
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-MLNVYDLTTGMQVCNK-VFEEKLLCLSWAGEE-KVILGG 815 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-~I~iwDl~tg~~i~~~-~~~~~i~~l~~s~~~-~lv~gs 815 (917)
.||+...+..+++..+......|++..|.|..+++|+.|. .|.+|++++|+.+..+ .|+++|.++++++.+ .+++|+
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999999999877777888999999999999998886 5999999999998765 578999999998754 578899
Q ss_pred CCCeEEEEECCCCE-EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecC----------------
Q psy3053 816 ALGMVYLVDLIQVQ-LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAG---------------- 876 (917)
Q Consensus 816 ~dG~I~vwdl~~~~-~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~---------------- 876 (917)
.|.+|++||+-... .+.++. +...++.+ +|+|+-|++++-||.|.+||...+..+..+.+
T Consensus 498 WDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred ccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 99999999996653 333333 44455555 78999999999999999999987665543322
Q ss_pred ----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEEeC
Q psy3053 877 ----HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVLTV 917 (917)
Q Consensus 877 ----h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~Ltv 917 (917)
.....+++++|+||..+++||....|++|++... +++.+++
T Consensus 577 ~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred hhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 2356899999999999999999999999999754 7776653
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=268.33 Aligned_cols=290 Identities=22% Similarity=0.354 Sum_probs=241.6
Q ss_pred ccceeeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccCCc---eeeee-eccccceEEEEEeCCCCEEEEEeccc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKTGR---QERSA-VLSSMTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~---~~~~~-~~~~~~V~sl~~spd~~~Lasgs~Dg 644 (917)
+-..+.+++|++.|..++|+|- |..|||+|.|..|++|+...+. +...+ .+|...|.+++|+|.|++||+|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3456788999999999999998 8999999999999999988532 22222 35888999999999999999999999
Q ss_pred EEEEEEeccC--eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 645 CVVIYDVECG--RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 645 ~I~Iwdl~tg--~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
++.||.-..+ +++.++.||...|.|++|+++|++|||+|+|.+|-+|.+... ........+.+|...|..+.|+
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded----dEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED----DEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC----CcEEEEeeeccccccccEEEEc
Confidence 9999987655 678999999999999999999999999999999999998754 1233455677899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECC---CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCc
Q psy3053 723 KDNNQLAVGTEAGELIIWSLE---NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~---~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~ 799 (917)
|...+|++++.|.+|++|+-. ...+.+++. +|...|.+++|++.|..+++++.|++++||-..+.-
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------- 228 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------- 228 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccCc----------
Confidence 999999999999999999876 336777887 888899999999999999999999999999754210
Q ss_pred eEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCe--E-----EE
Q psy3053 800 LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGR--I-----VT 872 (917)
Q Consensus 800 i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~--~-----l~ 872 (917)
-..|+..+..+.++...|++|+.|+.|+++.-..+- + ..
T Consensus 229 ----------------------------------~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 229 ----------------------------------SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred ----------------------------------chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 012566677777776778888888888888655321 1 12
Q ss_pred EecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q psy3053 873 ELAGHEDAISCVAWDEK-RKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 873 ~l~~h~~~V~slafSpd-g~~LaSgs~DG~V~IWdl~ 908 (917)
.-..|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 33568889999999994 7899999999999999875
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=284.84 Aligned_cols=335 Identities=21% Similarity=0.271 Sum_probs=271.7
Q ss_pred CCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee---ccccceEEEEEeCCCCEEEEEec
Q psy3053 566 DKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV---LSSMTLSSLCILPDNCTMLVGCW 642 (917)
Q Consensus 566 ~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~---~~~~~V~sl~~spd~~~Lasgs~ 642 (917)
.-++++...+++.|..-|.|+.|+|||.+++|++.||.+.+||-.+|+.+..+. .|.+.|.+++|+||++.+++++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 345567778889999999999999999999999999999999999999998887 79999999999999999999999
Q ss_pred ccEEEEEEeccCeeeEE-------------------------------------------eccCCCceeEEEecCCCCEE
Q psy3053 643 DSCVVIYDVECGRIVTE-------------------------------------------LAGHEDAISCVAWDEKRKRL 679 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~-------------------------------------------l~~H~~~Vt~l~~spd~~~L 679 (917)
|.+++|||+.+++++++ +.||...|+++..++++++|
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 99999999987755432 34899999999999999999
Q ss_pred EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee------------
Q psy3053 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM------------ 747 (917)
Q Consensus 680 ~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~------------ 747 (917)
++|+.||.|.-|+..++.. ....-..|...|.+++.+..+. +++.+.|.++++.++.....
T Consensus 336 ~SgsyDG~I~~W~~~~g~~------~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP 408 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTS------DRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP 408 (603)
T ss_pred EeeccCceEEEEecCCccc------cccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecCCCc
Confidence 9999999999999987721 1122246777888888775544 44555666777776532100
Q ss_pred --eE-----------------Eec-------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE---EEEeecCC
Q psy3053 748 --TQ-----------------QLS-------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ---VCNKVFEE 798 (917)
Q Consensus 748 --~~-----------------~l~-------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~---i~~~~~~~ 798 (917)
+. .+. ....-...+++++|++..+++|+.||.|++|.+..+.. .....+.+
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a 488 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA 488 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence 00 000 01223567899999999999999999999999987553 34567889
Q ss_pred ceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEE-EEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe-EEEE
Q psy3053 799 KLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLL-KQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR-IVTE 873 (917)
Q Consensus 799 ~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i-~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~-~l~~ 873 (917)
++++++++|++. +++|...+.+.+||+.+.... ..+.-|.+.|.|+ +|+..++|+|+-|-.|.||+++... .+..
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence 999999999875 667788899999999988763 3344599999999 5688999999999999999997654 3555
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 874 LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 874 l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
..+|...|+.+.|- |...|++.|.|..|++|++.
T Consensus 569 knAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 569 KNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 56798889999997 55789999999999999975
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=294.77 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=243.7
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
+.+|..|.|.|+|+.|++|+..|.+.+|+..+-.....+..|..+|.++.|++++.++++|+.+|.|++|+..-......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 56899999999999999999999999999865555556678999999999999999999999999999999875443333
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
...|...|++++|+|+...++|+|.||+|+|||.... .+.....+|.-.|.|++|+|...++++|+.|..|++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-------chhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 3345599999999999999999999999999998765 233345789999999999999999999999999999
Q ss_pred EECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCe
Q psy3053 740 WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGM 819 (917)
Q Consensus 740 wDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~ 819 (917)
||.+++.++.++. .|...|..+.|+|++++|++++.|..++++|+++-
T Consensus 249 WDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------------------------------- 296 (464)
T KOG0284|consen 249 WDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------------------------------- 296 (464)
T ss_pred ecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-------------------------------
Confidence 9999999999998 89999999999999999999999998888888743
Q ss_pred EEEEECCCCEEEEEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEE
Q psy3053 820 VYLVDLIQVQLLKQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l-~~h~~~V~slafSpdg~~LaS 895 (917)
+.+.++++|...|+++ +| ...++.+|+.||.|..|.+...+++..+ .+|...|++++|+|=|..|++
T Consensus 297 ---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 297 ---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred ---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEee
Confidence 3344556777777777 33 5678999999999999999866666555 579999999999999999999
Q ss_pred EeCCCcEEEEecC
Q psy3053 896 GNLVGAPKLYATE 908 (917)
Q Consensus 896 gs~DG~V~IWdl~ 908 (917)
|+.|.++++|.-.
T Consensus 368 gsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 368 GSNDRTVRFWTRN 380 (464)
T ss_pred cCCCcceeeeccC
Confidence 9999999999764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=308.77 Aligned_cols=289 Identities=26% Similarity=0.391 Sum_probs=253.2
Q ss_pred eeecc-CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 574 HFCHS-HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 574 ~~l~~-H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
..+.+ |...|+++.|+++|+.+++++.|+.+++|+..+++ ..+.+.+|...|.+++|+|+++++++|+.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34444 48899999999999999999999999999998777 7777789999999999999999999999999999999
Q ss_pred e-ccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 651 V-ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 651 l-~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
+ ..+..++++.+|...|++++|+|+++.+++|+.|++|++||++++ .......+|.+.|++++|+++++.++
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-------~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-------ECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-------eEEEeeeccCCceEEEEECCCCCEEE
Confidence 9 566899999999999999999999999999999999999999875 46667789999999999999999999
Q ss_pred EEECCCeEEEEECCCCe--eeEEecCCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe
Q psy3053 730 VGTEAGELIIWSLENHL--MTQQLSDDINA-SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~--~~~~l~~~h~~-~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s 806 (917)
+++.||.|++||+.++. +...+...... +++++.|+|++.++++++.|+.+++||+..+.....
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~------------- 371 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT------------- 371 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee-------------
Confidence 99999999999999998 45666533333 699999999999999999999999999887654422
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE-----eecCCEEEEEeCCCeEEEEECcCCeEEEEecCC-CCC
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-----HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH-EDA 880 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si-----s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h-~~~ 880 (917)
+.+|...+.|+ ...+.++++|+.|+.|++|+..++..+..+.+| ...
T Consensus 372 ---------------------------~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~ 424 (456)
T KOG0266|consen 372 ---------------------------YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAA 424 (456)
T ss_pred ---------------------------ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCc
Confidence 22333322222 458899999999999999999999999999999 899
Q ss_pred EEEEEEcCCCCEEEEEe--CCCcEEEEecCc
Q psy3053 881 ISCVAWDEKRKRLISGN--LVGAPKLYATEF 909 (917)
Q Consensus 881 V~slafSpdg~~LaSgs--~DG~V~IWdl~~ 909 (917)
+..++++|...++++++ .|+.+++|..+.
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 99999999999999998 799999998753
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=285.51 Aligned_cols=288 Identities=17% Similarity=0.281 Sum_probs=248.2
Q ss_pred eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEE
Q psy3053 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vW 691 (917)
.+.+..|...|.-+.|+++|++||+|+.|.+..+|.+... +...++.+|..+|..+.||||.++|++++.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 4556779999999999999999999999999999998754 4478899999999999999999999999999999999
Q ss_pred eCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 692 dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
|+.++... .....++...+.+++|.|||..+++|+.|+++..||++.. ............|.+++.++||+++
T Consensus 297 Dv~tgd~~------~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 297 DVDTGDLR------HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred cCCcchhh------hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEE
Confidence 99987211 1112235688999999999999999999999999999753 4444443344679999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE-EEeCCCeEEEEECCCCEEEEEEecCCCceEEE--ee--
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI-LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HF-- 846 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv-~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~-- 846 (917)
++.+.|..+++++..+...........++++++.+.++.++ +.-.+..+++||+...+.+..+.||...-.-+ .+
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 99999999999999887777677788899999999887755 56678899999999999999999998765544 22
Q ss_pred -cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCc
Q psy3053 847 -DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 847 -dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp-dg~~LaSgs~DG~V~IWdl~~ 909 (917)
+..++++|++|+.|+||+..+|+++.++.||...|++++|+| +..++||||+||+||||....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 567899999999999999999999999999999999999999 456899999999999998763
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=269.17 Aligned_cols=292 Identities=18% Similarity=0.256 Sum_probs=251.1
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEec-cCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSL-KTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~-~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
.|...+.+|++.|..+.|+|+|..+||||.|..|.+|++ ...+....+++|.++|..+.|.+|++.+++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 466778999999999999999999999999999999995 4455667788999999999999999999999999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
|.++|+.+..+++|.+-|+++.-+.-| ..+.||+.||++++||+++. ..........+++++.|..++..+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--------~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--------EAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--------chhhccccceeEEEEEecccccce
Confidence 999999999999999999999865444 46778999999999999865 233344456779999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~ 808 (917)
.+|+-|+.|++||++.+.....+. +|.++|+.+..+++|..+++-+.|.++++||++.-.+ .
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----------------~ 251 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----------------S 251 (338)
T ss_pred eeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCC-----------------C
Confidence 999999999999999999999998 9999999999999999999999999999999874311 1
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCC--Cc---e-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHK--DA---V-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~--~~---V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
.+++..+.+|. -. . .+.+|++..+.+|+.|..+++||..+...+..+.||.+.|.
T Consensus 252 -------------------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 252 -------------------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred -------------------CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 11122222221 11 1 22278999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 883 CVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+++|+|....|.+++.|.+|.+=++
T Consensus 313 ~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999999987443
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=308.59 Aligned_cols=277 Identities=19% Similarity=0.251 Sum_probs=239.8
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
..++..-...++|..|++|++.+|.|-.|..|++|.+...+ ++.++... +-..+=+++.|-.+.+.|-.
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~----------~l~~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS----------DLSNIDTESADVDVDMLDDD 439 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh----------hhccccccccchhhhhcccc
Confidence 34444455689999999999999999999999999987543 22222211 11122234455556777777
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
++....++.||.++|..+.|+|+.++|+++|.|++|++|.+.+. ...+...+|..+|+++.|+|.|-++|+|+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-------s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-------SCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc-------eeEEEecCCCcceeeEEecCCceEEEecC
Confidence 77777889999999999999999999999999999999999876 46667779999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
.|++.++|......+++.+. +|.+.|.|+.|+|++.++++|+.|.++++||+.+|..
T Consensus 513 ~D~tArLWs~d~~~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---------------------- 569 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---------------------- 569 (707)
T ss_pred CCceeeeeecccCCchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcE----------------------
Confidence 99999999999988888888 9999999999999999999999999999999877643
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
++.+.||.++|+++ +|+|++|++|+.||.|.+||+.+++++..+.+|++.|.++.||.||
T Consensus 570 ------------------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 570 ------------------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred ------------------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 44557899999998 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q psy3053 891 KRLISGNLVGAPKLYATE 908 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl~ 908 (917)
..||+||.|.+|++||+.
T Consensus 632 ~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 632 NVLASGGADNSVRLWDLT 649 (707)
T ss_pred CEEEecCCCCeEEEEEch
Confidence 999999999999999986
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-31 Score=264.33 Aligned_cols=246 Identities=21% Similarity=0.340 Sum_probs=206.7
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
..+++.+.||...|..++.++||++.++++.|+++++||+.+++..+.+.+|...|.++++++|++.+++|+.|.+|++|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCeeeEEecc-CCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 650 DVECGRIVTELAG-HEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 650 dl~tg~~i~~l~~-H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
++..+........ |.+.|+|++|+|+ ..+|+++|+|++|++||+++. +......+|.+.++.+++||||.
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-------~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-------QLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-------chhhccccccccEEEEEECCCCC
Confidence 9986544443333 3899999999997 689999999999999999875 23344678999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC---------
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE--------- 797 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--------- 797 (917)
.+++|+.||.+.+||++.++.+..+. +...|.+++|+|+.-.|+.+. +..|+|||+.++..+.....+
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccC
Confidence 99999999999999999999988875 889999999999976666554 556999999998776554322
Q ss_pred -CceEEEEEeCCC-EEEEEeCCCeEEEEEC
Q psy3053 798 -EKLLCLSWAGEE-KVILGGALGMVYLVDL 825 (917)
Q Consensus 798 -~~i~~l~~s~~~-~lv~gs~dG~I~vwdl 825 (917)
....+++|+.+| .+++|..|+.|++|.+
T Consensus 283 ~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 283 DPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred CcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 113345555443 4666666666666654
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=287.33 Aligned_cols=345 Identities=19% Similarity=0.249 Sum_probs=292.9
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+..+. .+..++.||+.+|+++.|+..|..|++||.|+.|.+||+-...-...+.+|...|+...|..+.+.+++.|
T Consensus 90 qif~~~s~-~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~s 168 (888)
T KOG0306|consen 90 QIFSLESE-EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVS 168 (888)
T ss_pred EeeccCCC-ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEec
Confidence 67887665 66778999999999999999999999999999999999988888889999999999999998899999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC----------------------
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH---------------------- 699 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~---------------------- 699 (917)
.|+.|++||+++..+..+...|.+.|+++++.+ +.+++++.|+.+++|++......
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R 246 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR 246 (888)
T ss_pred cCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCc
Confidence 999999999999999999999999999999987 89999999999999998110000
Q ss_pred ---------cc-------------------------------------C------C------------------------
Q psy3053 700 ---------MK-------------------------------------P------S------------------------ 703 (917)
Q Consensus 700 ---------~~-------------------------------------~------~------------------------ 703 (917)
.+ . .
T Consensus 247 ~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~ 326 (888)
T KOG0306|consen 247 EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSF 326 (888)
T ss_pred eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEE
Confidence 00 0 0
Q ss_pred --------c-----------------------------ceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q psy3053 704 --------K-----------------------------SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL 746 (917)
Q Consensus 704 --------~-----------------------------~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~ 746 (917)
. ......+|...|.+++++.+...+++|+ .+.+++|+..+.+
T Consensus 327 dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k 405 (888)
T KOG0306|consen 327 DVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK 405 (888)
T ss_pred EEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcc
Confidence 0 0012346777888888887776666654 5678888887766
Q ss_pred eeEEec---------------------------------------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 747 MTQQLS---------------------------------------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 747 ~~~~l~---------------------------------------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
+++++. ..|.+.+.+++.+||++.+++|+.|.+|++||..-
T Consensus 406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 555432 15788999999999999999999999999999631
Q ss_pred -----CeE--------EEEeecCCceEEEEEeCCCEE-EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 788 -----GMQ--------VCNKVFEEKLLCLSWAGEEKV-ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 788 -----g~~--------i~~~~~~~~i~~l~~s~~~~l-v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
|.. .........+.|++++|++.+ +++--|.++.+|-+.+.+..-++-||.-+|.|+ +||++.+
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeE
Confidence 111 134556788999999998875 456679999999999999999999999999999 8999999
Q ss_pred EEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 852 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
++||.|.+|++|-++-|.+.+.+-+|.+.|.++.|-|+...+.|+|.||.|+-||-+.+
T Consensus 566 vTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred EeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 99999999999999999999999999999999999999999999999999999987643
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=255.27 Aligned_cols=285 Identities=17% Similarity=0.298 Sum_probs=243.6
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..+.+..|+++|.++.|+-||++.++++.|.+|++|+...|.++++..+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
++|+..+.+.+|.+.|+.++|+.+...+++||.|.++++||.++. ...++.......+.|.++.++ +..+++|
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-----s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-----SFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC-----CCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999999999999999999999876 223344445566778888876 6789999
Q ss_pred ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
+.||+++.||++.|+..... ...+|++++|+++|+..++++-|+++++.|-.+|+.
T Consensus 162 S~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl--------------------- 217 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL--------------------- 217 (307)
T ss_pred ccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHH---------------------
Confidence 99999999999998876554 467899999999999999888888888887766644
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEE----EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC-EEEEEE
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS----LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-ISCVAW 886 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~s----is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~-V~slaf 886 (917)
+..+.+|...-.. +.-....+++|++||.|.+||+.....+..+..|... |.++++
T Consensus 218 -------------------L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 218 -------------------LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSC 278 (307)
T ss_pred -------------------HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeec
Confidence 3444555543322 2445667999999999999999999999999988887 899999
Q ss_pred cCCCCEEEEEeCCCcEEEEec
Q psy3053 887 DEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl 907 (917)
+|.-..+++++.. .+..|.-
T Consensus 279 hp~~~~f~~A~~~-~~~~~~~ 298 (307)
T KOG0316|consen 279 HPTMDDFITATGH-GDLFWYQ 298 (307)
T ss_pred ccCccceeEecCC-ceeceee
Confidence 9988777776544 4556644
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=288.28 Aligned_cols=291 Identities=15% Similarity=0.254 Sum_probs=252.4
Q ss_pred cceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccC-CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKT-GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVI 648 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t-~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~I 648 (917)
+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++-+ +++++++.+|..+|.+++|+.+|..+++++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678999999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EEeccCeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 649 YDVECGRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 649 wdl~tg~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
||+++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||++++ ..+.....|-+.|..+.|-++|+.
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-------kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-------KVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-------HHHHHHHhhhhheeeeEEccCCce
Confidence 9999999998886 34578999999988 88999999999999999987 233334467789999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC
Q psy3053 728 LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~ 807 (917)
+++++.|+++++|+.+.+..+............++..+|+++++++-+.|+.+.++.+...-..
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~---------------- 420 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL---------------- 420 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc----------------
Confidence 9999999999999999888777766566677889999999999999999999999875432111
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEE----EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS----LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~s----is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
...+.+.+|..+=.+ .||||++|++|+.||.+.+||.++-+.+..+++|.+++..
T Consensus 421 ---------------------nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 421 ---------------------NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred ---------------------CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 112334455433222 2889999999999999999999999999999999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEe
Q psy3053 884 VAWDEK-RKRLISGNLVGAPKLYA 906 (917)
Q Consensus 884 lafSpd-g~~LaSgs~DG~V~IWd 906 (917)
+.|+|. ...+||+|.||.|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 999995 46799999999999996
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=265.93 Aligned_cols=301 Identities=16% Similarity=0.190 Sum_probs=263.7
Q ss_pred ccccccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE
Q psy3053 558 SDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 558 ~d~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L 637 (917)
.|..-+|+..++- ....+.+|++.|+++.||.+|.+||||+.+|.|+||...++.....+......+.-+.|+|.+..|
T Consensus 85 DD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 85 DDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL 163 (399)
T ss_pred CceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE
Confidence 3445688876653 677889999999999999999999999999999999999999988887677778889999999999
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee-ccCCCce
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRI 716 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V 716 (917)
+.|+.||.+.+|.+.++...+.+.||..++++-.|.|+|+.++++..||+|++|+..++. +.... .......
T Consensus 164 lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-------p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-------PLHKITQAEGLEL 236 (399)
T ss_pred EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc-------eeEEecccccCcC
Confidence 999999999999999988899999999999999999999999999999999999998872 22111 1224567
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-------CCCCCeEEEE---EecCCCEEEEEeCCCeEEEEECC
Q psy3053 717 KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-------DINASVNGVL---FSEDGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-------~h~~~V~~v~---fspdg~~L~s~s~Dg~I~iwDl~ 786 (917)
.|+.++..+..++.|+.+|.+++....+|+.+....+ .+...+.++. ++..-.+.|+|+-||+|.|||+.
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 8999999999999999999999999999888776652 2334444444 44456678899999999999999
Q ss_pred CCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEE
Q psy3053 787 TGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 787 tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwd 864 (917)
.........++..|..+.|.+..++++++.+|.|+.||.++|+++.++.||...|.++ +++++.++++|.|++.+|++
T Consensus 317 ~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 317 ASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9888888999999999999997799999999999999999999999999999999998 78999999999999999998
Q ss_pred Cc
Q psy3053 865 VE 866 (917)
Q Consensus 865 l~ 866 (917)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 64
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=311.16 Aligned_cols=287 Identities=20% Similarity=0.305 Sum_probs=231.1
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC----c----eeeeeeccccceEEEEEeC-CCCEEEEEecccEE
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG----R----QERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCV 646 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~----~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I 646 (917)
+..|.+.|++++|+|+|+++|+|+.|+.|+||+..+. . ....+. +...+.+++|++ ++.+|++|+.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 111222 345788999987 47899999999999
Q ss_pred EEEEeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe-CC
Q psy3053 647 VIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KD 724 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pd 724 (917)
++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++. . .....+...+.+++|+ ++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-------~-~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-------S-IGTIKTKANICCVQFPSES 629 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-------E-EEEEecCCCeEEEEEeCCC
Confidence 9999999999999999999999999996 78899999999999999997651 2 2222344679999995 47
Q ss_pred CCEEEEEECCCeEEEEECCCCe-eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEE
Q psy3053 725 NNQLAVGTEAGELIIWSLENHL-MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCL 803 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l 803 (917)
|..+++|+.||.|++||++++. ....+. +|...|.++.|. ++..+++++.|++|++||+..+..
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~------------- 694 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS------------- 694 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc-------------
Confidence 8999999999999999998765 344555 788999999997 678999999999999999864310
Q ss_pred EEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe-------
Q psy3053 804 SWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL------- 874 (917)
Q Consensus 804 ~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l------- 874 (917)
.....++..+.+|...+.++ ++++.+|++|+.||.|++|+......+..+
T Consensus 695 ---------------------~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 695 ---------------------GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred ---------------------ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 00123445666777776665 667889999999999999987655433221
Q ss_pred ------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 875 ------AGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 875 ------~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 754 ~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999986
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=273.60 Aligned_cols=287 Identities=18% Similarity=0.250 Sum_probs=241.2
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeeccccceEEEEEeCCCCEEEEEecccEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVV 647 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~ 647 (917)
+..+.+..|++.|.-+.||++|++|||++.|.+..+|.+.... ..+++.+|..+|..+.|+||+++|++++.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 3456789999999999999999999999999999999986543 3678889999999999999999999999999999
Q ss_pred EEEeccCeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEeCCC
Q psy3053 648 IYDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAISKDN 725 (917)
Q Consensus 648 Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg 725 (917)
+||+.+|.....+. +|...+.+++|.|||..+++|+.|+++..||++... .... ......|.++++++||
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--------~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--------LGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--------hhcccccccceeEEEEEcCCC
Confidence 99999998877664 356889999999999999999999999999997752 1111 1123569999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCc--eEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEK--LLC 802 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~--i~~ 802 (917)
+.+++.+.|..|++++..+......+. ...+|++.+.|.+|+++++.-.+..+++||++....+.... +... +..
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred cEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 999999999999999988765554443 56789999999999999999999999999998665554332 2211 222
Q ss_pred EEE--eCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee---cCCEEEEEeCCCeEEEEECcC
Q psy3053 803 LSW--AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 803 l~~--s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~t 867 (917)
-+| ..+..+++|+.|+.|++|+..+++++..+.||...|.|+++ +..++|+||+||+|+||....
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 233 34457889999999999999999999999999999999977 567899999999999998653
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=271.19 Aligned_cols=277 Identities=17% Similarity=0.277 Sum_probs=243.4
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
....|.|+.+..+ .+++|..|.+|+|||..+..+.+.+.+|.+.|.|+.+ +.+.+++|+.|.+|++||+++|+++.
T Consensus 196 ~skgVYClQYDD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEecch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 4567888887544 5999999999999999999999999999999999887 45699999999999999999999999
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
++-+|.++|..+.|+. .+++|+|.|.++.+||+.... .........+|...|..+.|+ .+++++++.|.+|+
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 9999999999999986 799999999999999997652 111223357899999999987 45999999999999
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCC
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGAL 817 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~d 817 (917)
+|++.+++.++++. +|...|.|+.+ .|+++++|+.|.+|++||+..|.++.... |++-+.|+.|+.. .+++|+.|
T Consensus 344 vW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k-rIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc-eeeecccc
Confidence 99999999999998 89998988876 68899999999999999999999887654 5566999999988 99999999
Q ss_pred CeEEEEECCCCE---------EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEE
Q psy3053 818 GMVYLVDLIQVQ---------LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIV 871 (917)
Q Consensus 818 G~I~vwdl~~~~---------~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l 871 (917)
|+|++||+..+. ++..+..|++.|..+.+|...+++++.|.+|.|||...+...
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999997653 344556799999999999999999999999999999877654
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=251.96 Aligned_cols=305 Identities=16% Similarity=0.204 Sum_probs=259.9
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
.++||..+++.|.++.+|.+|++++.|.+..+|-..+|+.+.++.+|.++|+||...-+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEEC-----CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSW-----DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-----DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
+++..++ ...+|..+.|+++|++++.++. .+.|.++|++..........+......+.+.++.+-|.|-++.|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999887 5678999999999998887654 368999999866433333444666677889999999999999999
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC-
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE- 808 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~- 808 (917)
+|..+|.|..||+++|.........|...|+.+.+++|..++++++.|.+-++||..+-+.+.......++++.+++|-
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 9999999999999998776666558999999999999999999999999999999999999999999999999999984
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCC--eEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDS--CVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG--~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
..++.|+..... .|+. +....| .-++|++-..+.+..+++|-++|++++|
T Consensus 244 d~VilgGGqeA~-------------------dVTT---------T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 244 DHVILGGGQEAM-------------------DVTT---------TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred ceEEecCCceee-------------------eeee---------ecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 244444432110 1111 011112 2356666666778889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecC
Q psy3053 887 DEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl~ 908 (917)
+|+|+..+||+.||.|++.-++
T Consensus 296 hPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCCcccccCCCCceEEEEEec
Confidence 9999999999999999998775
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=270.15 Aligned_cols=270 Identities=21% Similarity=0.351 Sum_probs=237.3
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
...|.|+.+ |+..+++|..|++|+|||..+-.+...+.||++.|.|+.+.. +.+++||.|.+|++||+.++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tg----- 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTG----- 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCC-----
Confidence 456788776 567899999999999999999999999999999999999965 79999999999999999987
Q ss_pred CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee---EEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT---QQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~---~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
..+....+|...|..+.|+ ..++++++.|.++.+||+.....+ +.+. +|...|+.+.|+. +++++++.|.
T Consensus 268 --e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd~--kyIVsASgDR 340 (499)
T KOG0281|consen 268 --EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFDD--KYIVSASGDR 340 (499)
T ss_pred --chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeecccc--ceEEEecCCc
Confidence 4566678899999999998 568999999999999999876422 2233 8999999999964 5999999999
Q ss_pred eEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC
Q psy3053 779 MLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD 857 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D 857 (917)
+|++|++.+++.+..+. |...|.|+.+.+. .+++|++|.+|++||+..|.+++.++||..-|.|+.+|.+.+++|+.|
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQYr~r-lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYD 419 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 419 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhccCe-EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeecccc
Confidence 99999999999988764 5667888888777 899999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECcCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 858 SCVVIYDVECGR---------IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 858 G~I~Iwdl~tg~---------~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|+|++||+.++. ++..+..|++.|..+.|. ...+++++.|.+|.|||+...
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 999999997653 345566799999999994 578999999999999998644
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=251.96 Aligned_cols=254 Identities=20% Similarity=0.310 Sum_probs=221.9
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC------ceeeeeeccccceEEEEEeCCCC
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG------RQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~------~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
.+|+..+..+ ++.+......|..++|+|.|+++|+|+-|+...||++.+. ...+.+.+|.+-++||.|.+ +.
T Consensus 80 IvWDs~TtnK-~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~ 157 (343)
T KOG0286|consen 80 IVWDSFTTNK-VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DN 157 (343)
T ss_pred EEEEcccccc-eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CC
Confidence 6899877654 5666777889999999999999999999999999999854 34567889999999999987 56
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.|++|+.|.+..+||+++|+.+..+.||.+.|.+++++| +++.+++|+-|++.++||++.+ .....+.+|++
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-------~c~qtF~ghes 230 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-------QCVQTFEGHES 230 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-------ceeEeeccccc
Confidence 889999999999999999999999999999999999999 9999999999999999999887 56777889999
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy3053 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~ 793 (917)
.|.++.|.|+|.-+++|+.|+++++||++..+.+..+.. ....+|++++||..|++|.+|..|.++.+||.-.+
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~----- 305 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG----- 305 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-----
Confidence 999999999999999999999999999999988887762 23468999999999999999888888888886544
Q ss_pred eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEE
Q psy3053 794 KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 794 ~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwd 864 (917)
+.+..+.+|.+.|.|+ +|||.-+++|+.|..++||.
T Consensus 306 -----------------------------------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 -----------------------------------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------------------------------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3344566788888887 77888888888888888883
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=286.85 Aligned_cols=209 Identities=21% Similarity=0.302 Sum_probs=199.6
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
....+.||.++|..+.|+|+.++|+++|.|+++|+|++.+..++...++|..+|+++.|+|-|-++|+|+.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
+...+.+.+.||-+.|.|+.|+|++++++|||.|.+|++||+.++ .......+|.++|+++++||+|++|++|
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-------NSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-------cEEEEecCCCCceEEEEEcCCCceEeec
Confidence 999999999999999999999999999999999999999999887 3566678999999999999999999999
Q ss_pred ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
+.||.|.+||+.+++.+..+. +|.+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999998 88999999999999999999999999999998643
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=263.99 Aligned_cols=276 Identities=16% Similarity=0.262 Sum_probs=249.4
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
+..|++++|+.+|..||+|+.||.+++|+. +|.++.++..|.++|.++.|+.+|++|++++.||++.+||..+|...+.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 357999999999999999999999999995 5778889999999999999999999999999999999999999999999
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
+.-|..+-..+.|-. ...+++++.||.|.|+.+... .+..+..+|.++|.++.|+|.|.+|++++.|++++|
T Consensus 314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~-------~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGED-------RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI 385 (524)
T ss_pred eeeccCCccceEEec-CceEeecCCCceEEEEEecCC-------CcceeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence 999998878889974 467899999999999998765 355667789999999999999999999999999999
Q ss_pred EECCCCeeeEEecCCCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEECCCCeEEEEe-ecCCceEEEEEeCCC
Q psy3053 740 WSLENHLMTQQLSDDINASVNGVLFSEDG---------CRVLSCGNNCMLNVYDLTTGMQVCNK-VFEEKLLCLSWAGEE 809 (917)
Q Consensus 740 wDl~~~~~~~~l~~~h~~~V~~v~fspdg---------~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~~i~~l~~s~~~ 809 (917)
|+.........+. .|...|..+.|+|.| ..+++++.|++|++||+..|.++..+ .|..+|.+++++|++
T Consensus 386 Ws~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred eecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 9999888888888 899999999999954 47999999999999999999999987 789999999999876
Q ss_pred E-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECc
Q psy3053 810 K-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 810 ~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
. +++|+.||.|.+|+.++++.++.+.+. +.|..+ +.+|..|.++-.||.+++.|++
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 4 778999999999999999999998764 446666 4478999999999999999875
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=276.67 Aligned_cols=285 Identities=16% Similarity=0.216 Sum_probs=237.6
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..+.+..|++.|.+|.++|...+++++-..|.|.||+.++...++++.....+|.++.|.+..+++++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEE
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAV 730 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Las 730 (917)
.+++.+..+.+|.+-|.|++.+|...+++|+|.|-+|++||.+.. ..+.....+|..-|.+++|+| |.+.+|+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------WACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc------eeeeeEEcCcceEEEEEEecCCCccceee
Confidence 999999999999999999999999999999999999999999876 345667789999999999999 5689999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG--CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg--~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~ 808 (917)
++-|++|++|.+.+..+..++. +|...|+++.+-+.| .+|++|+.|.+++|||..+.
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-------------------- 217 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-------------------- 217 (794)
T ss_pred eeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH--------------------
Confidence 9999999999999999999999 999999999998744 46666666666666665554
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
.+++++.||...|.++.+ .-..+++|++||+++||+..+-+...++.-.-++|++++-
T Consensus 218 --------------------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 218 --------------------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred --------------------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence 455556666666666633 3445777777777777777666666666555566777776
Q ss_pred cCCCCEEEEEeCCCcEE
Q psy3053 887 DEKRKRLISGNLVGAPK 903 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~ 903 (917)
.+.+..++.|.+.|.|.
T Consensus 278 ~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVT 294 (794)
T ss_pred cCCCCeEEEeccCCcEE
Confidence 66666666666666553
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=243.58 Aligned_cols=279 Identities=19% Similarity=0.283 Sum_probs=231.5
Q ss_pred ccccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCEE
Q psy3053 560 VSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 560 ~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~L 637 (917)
..+.|...++ .+..+++...+.|..+.+.|+++.||+++. ..|++||+.++. ++.++.+|...|+++.|..+|+.+
T Consensus 21 TIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 21 TIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM 98 (311)
T ss_pred eeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE
Confidence 3478887765 677888888899999999999999998874 679999998875 478899999999999999999999
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
++|+.||+++|||++...+.+.+. |.++|+++..+|+...|++|..+|.|++||+....... ....+....|.
T Consensus 99 yTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~------~liPe~~~~i~ 171 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH------ELIPEDDTSIQ 171 (311)
T ss_pred EecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc------ccCCCCCccee
Confidence 999999999999999866655554 88999999999999999999999999999998762111 11223457899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCe------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHL------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i 791 (917)
++++.|||.+++++...|.+++|++-++. ++.+++ .|.+.+..+.+|||+++|++++.|.+++||+..+- .
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~- 248 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F- 248 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e-
Confidence 99999999999999999999999997653 344444 78899999999999999999999999999997654 1
Q ss_pred EEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 792 CNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
+....+.+|...+... +.||.+|++|+.|+.+++|++..++
T Consensus 249 -------------------------------------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 249 -------------------------------------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred -------------------------------------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 2223455666666655 5588899999999999999999999
Q ss_pred EEEEecCCCCCEEEEEEc
Q psy3053 870 IVTELAGHEDAISCVAWD 887 (917)
Q Consensus 870 ~l~~l~~h~~~V~slafS 887 (917)
.++...+|..+..|++..
T Consensus 292 ~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 292 EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeecCCcccccEEEEee
Confidence 998888888877777653
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=277.97 Aligned_cols=292 Identities=19% Similarity=0.256 Sum_probs=255.2
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
.+.||...|.++++|.+...+++|+ .+.+++|+..+.++++++... -+.+..|.|.++++++|...|.+.++|+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 4679999999999999998777765 678999999999999988754 6788899999999999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC-----cceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS-----KSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
..+.++++|.++|++++.+||+..++|||.|.+|++||..-........ ............|.|+.+||||+++|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 9999999999999999999999999999999999999974322100000 11112345678899999999999999
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE 809 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~ 809 (917)
+|--|.++++|-+++-+..-.+- +|.-+|.|+..|||++.+++|+.|..|++|-+.-|.
T Consensus 525 VsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-------------------- 583 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-------------------- 583 (888)
T ss_pred EEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccch--------------------
Confidence 99999999999999998888887 999999999999999999999999999999776543
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS 887 (917)
+-+.+-+|.+.|.++ -|....+.++|.||.|+-||-..-+.+..+.+|...|++++.+
T Consensus 584 --------------------CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 584 --------------------CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred --------------------hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 344566788888888 4577789999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCcc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|+|.+++|+|.|.+|++|.-...
T Consensus 644 ~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred CCCCeEEeccCCceeEeeeccCc
Confidence 99999999999999999997653
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=262.61 Aligned_cols=267 Identities=17% Similarity=0.286 Sum_probs=234.2
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
...+.+.+|..+|+.+.++|+-..+++++.|++|++||..+|++...++||.+.|..++|+..|++++++|.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
..+. ..+.....+|...|.+++|-|.|+++++++.|.+|+.|++.++.++.++. +|...|..+..+.||..++
T Consensus 179 ~~~~------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 179 FDTF------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred HHHH------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEE
Confidence 8653 23555677899999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEE
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTM 851 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~L 851 (917)
+++.|.++++|-+.++++.... .++.++-|++|.|... ..... .-.+.. -.++++
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~~i~----------------~at~~~-------~~~~~l 307 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YPSIS----------------EATGST-------NGGQVL 307 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Ccchh----------------hccCCC-------CCccEE
Confidence 9999999999999988665443 4677899999987621 10000 000000 046789
Q ss_pred EEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 852 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+|+.|++|++||+.+|.++.++.+|...|.+++|+|.|++|+|+.+|+++++||++..
T Consensus 308 ~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred EeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999865
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=251.78 Aligned_cols=286 Identities=20% Similarity=0.284 Sum_probs=257.9
Q ss_pred eeeeccccceEEEEEeC---CCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 616 RSAVLSSMTLSSLCILP---DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~sp---d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
....+|..+|..++|+| +|-+|++++.||.-.+-+-++|.-+.++.||.++|++.+...+...-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 34567889999999875 889999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee-EEecCCCCCCeEEEEEecCCCEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT-QQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~-~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.-++ .......|..-|.+++|+.|.+.|++|+.+..++++|++..+.. ..+. +|.+.|..+.|....+.+
T Consensus 88 a~tg--------delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 88 AVTG--------DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhh--------hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEeccCceE
Confidence 8776 33445678889999999999999999999999999999876544 4444 899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC-CCceEEEeecCCE
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH-KDAVLSLHFDNCT 850 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h-~~~V~sis~dg~~ 850 (917)
++++.|++|++||.+++..+..+..+.++.++..+++|.+++....+.|.+||..+..+++.+... .-.-.+++|+...
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEF 238 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999988887642 2233455888999
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++|+.|+.++.||..+|..+..+ ++|.++|.|+.|+|||..-++|+.||+|++|.+...
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999999999886 999999999999999999999999999999998644
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=255.46 Aligned_cols=288 Identities=19% Similarity=0.345 Sum_probs=244.1
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCC---CEEEEEecccEEEEEEeccC
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN---CTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~---~~Lasgs~Dg~I~Iwdl~tg 654 (917)
.|.+.|.+|... +..|+||+.||.+++||.. |+....+.+|.++|.+++|.-.+ ..+++++.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 588999999888 7799999999999999964 78889999999999998886433 36999999999999999877
Q ss_pred ee----eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC------------------CCccCCcceeeeccC
Q psy3053 655 RI----VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW------------------SHMKPSKSLVSQLDL 712 (917)
Q Consensus 655 ~~----i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~------------------~~~~~~~~~~~~~~h 712 (917)
+. +..-.||.+.|-+++..++|..+++||.|.++++|+..... .......++....+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 43 33445999999999999999999999999999999933211 011122345667899
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 713 DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
..+|.++.|++ ...+.+++.|.+|+.||+.++.....+. .+....++..+|..++|++|+.|..+++||.+++.-
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-- 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-- 334 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecCCCCCCC--
Confidence 99999999998 7789999999999999999999888886 567899999999999999999999999999987621
Q ss_pred EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee---cCCEEEEEeCCCeEEEEECcCCe
Q psy3053 793 NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
.-...++.+|.+.|.++.+ +...+++|+.||++++||+++.+
T Consensus 335 -----------------------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 335 -----------------------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred -----------------------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 1234567789999999944 55679999999999999999887
Q ss_pred -EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 870 -IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 870 -~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++..+.+|.+.|.++.|. ++..++|||.|.+|+|+.-..
T Consensus 380 ~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 380 APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 999999999999999998 567999999999999987653
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=269.54 Aligned_cols=324 Identities=17% Similarity=0.213 Sum_probs=266.4
Q ss_pred cccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE
Q psy3053 561 SNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 561 ~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg 640 (917)
..+||...+ .++..+..|.++|.+++|+|++.++++||.|-.|++|+..+.+++.++.+|-.-|..+.|++.-.+++++
T Consensus 33 IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 33 IQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred eeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc
Confidence 368987654 5678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-CC----------------
Q psy3053 641 CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK-PS---------------- 703 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~-~~---------------- 703 (917)
|.|.+|+||+..+++++..+.||..-|.|..|+|....++|+|-|.+|+|||+..-..... +.
T Consensus 112 SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf 191 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF 191 (1202)
T ss_pred cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc
Confidence 9999999999999999999999999999999999999999999999999999865321110 00
Q ss_pred ---c--ceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 704 ---K--SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 704 ---~--~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
. ......+|+..|..++|+|.-.++++|+.|..|++|.+...+. +.+.. +|.+.|.++.|+|...++++.|+
T Consensus 192 g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr-gH~nnVssvlfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 192 GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR-GHYNNVSSVLFHPHQDLILSNSE 270 (1202)
T ss_pred CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhh-cccCCcceEEecCccceeEecCC
Confidence 0 0112458999999999999999999999999999999875432 23334 89999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeec-CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe
Q psy3053 777 NCMLNVYDLTTGMQVCNKVF-EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC 855 (917)
Q Consensus 777 Dg~I~iwDl~tg~~i~~~~~-~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs 855 (917)
|++|++||+...+.+..+.. .++..+++.+|...+++++.|+-+.+|.+...++ ..++ +++.|.-.-
T Consensus 271 DksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp----------a~~v--~~n~LfYvk 338 (1202)
T KOG0292|consen 271 DKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP----------AYAV--NGNGLFYVK 338 (1202)
T ss_pred CccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc----------eEEE--cCCEEEEEc
Confidence 99999999999888887765 4678899999998999999999888888754333 2233 334444443
Q ss_pred CCCeEEEEECcCCeE--EEEecCC---CCCEEEEEEcCCCCE-EEEEeCC
Q psy3053 856 WDSCVVIYDVECGRI--VTELAGH---EDAISCVAWDEKRKR-LISGNLV 899 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~--l~~l~~h---~~~V~slafSpdg~~-LaSgs~D 899 (917)
|..|+-+|+.+.+- +..++.. ..++.++.++|.... |++...|
T Consensus 339 -d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 339 -DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred -cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence 88999999987543 3344432 367889999996554 4443333
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=246.02 Aligned_cols=288 Identities=15% Similarity=0.186 Sum_probs=261.2
Q ss_pred eeeccCCcceEEEEEeC---CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 574 HFCHSHKEAITAVAICG---EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
.+..||+.+|..++||| +|-+|++++.||.-.+-+-++|.-+.++.+|.++|++++...+....|+++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45689999999999985 888999999999999999999999999999999999999999988999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
.-+|..+..+. |...|.+++|+.|.++|+||+.+..++|+|++.. ..+.....+|.+.|..+.|....+.+++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p------~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP------KAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC------CCCchhhcCCCCcceeEEEeccCceEEe
Confidence 99999988886 8899999999999999999999999999998765 2233445689999999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC-C
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE-E 809 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~-~ 809 (917)
++.|++|++||.+++..++.+. ...+|+++.++++|++|.++ ..+.|..||..+-..+.....+..|.+.+.+|+ +
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCc
Confidence 9999999999999999999987 67899999999999876655 456899999999999999999999999999875 4
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEE-ecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEE
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQV-RAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIV 871 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l-~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l 871 (917)
.+++|+.|+.++.||..++..+..+ ++|.++|.|+ +|+|..-++|++||+|++|....++.-
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 6889999999999999999999886 8999999999 789999999999999999998766543
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-29 Score=252.93 Aligned_cols=285 Identities=15% Similarity=0.264 Sum_probs=244.7
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee--------eeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS--------AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~--------~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
+.+.-+.|..|||||++|++|+.||.|.+|+..+|+..+. +..+..+|.|+.|+.|...+|+|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 5567788999999999999999999999999999876543 34467899999999999999999999999999
Q ss_pred EeccCeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 650 DVECGRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 650 dl~tg~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
.+.+|.+++.+. +|+..|+|+.|+.|+..++++|.|.++++.-+.++ +.+....+|.+-|+...|.++|..+
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-------K~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-------KCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-------hhHHHhcCccccccceEEcCCCCeE
Confidence 999999999987 89999999999999999999999999999998877 4566678999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCC-CCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDD-INASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~-h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s 806 (917)
++++.||+|++|+..+.+++.++... ...+|.++..-| +...+++|...+++++.++. |+.+..+..
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS---------- 432 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS---------- 432 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc----------
Confidence 99999999999999999999988743 345788877777 45677888888888887764 333221110
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sla 885 (917)
|+ ....+-|.|+ +|.|.++.+.++|+.++.+.+.+|++..++.-|...|-.++
T Consensus 433 ---------------------Gk-----REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 433 ---------------------GK-----REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT 486 (508)
T ss_pred ---------------------CC-----ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc
Confidence 00 0123345554 99999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEe
Q psy3053 886 WDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 886 fSpdg~~LaSgs~DG~V~IWd 906 (917)
-+|..+.||+-+.||.+++|.
T Consensus 487 HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 487 HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCcccchhhhhcccchhhhcC
Confidence 999999999999999999995
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=270.53 Aligned_cols=312 Identities=13% Similarity=0.192 Sum_probs=243.9
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
+...+..|.+++|+|...+++++-..|.|++||..-+.++..+..|.++|..++|+|++.++++|+.|..|++|+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
++.++.||-+-|..+.|++.-.+|+|+|.|.+|+||+..+. .++....+|...|.|..|+|....++++|-|.
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-------~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-------KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-------ceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 99999999999999999999999999999999999999776 57777899999999999999999999999999
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC-CEEEEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE-EKVILG 814 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~-~~lv~g 814 (917)
+|++||+..-+....-..+......... +..=+-|+.|..|+.. + ..|...|+-++|+|. ..+++|
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~----~~~dLfg~~DaVVK~V-L--------EGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQ----GNSDLFGQTDAVVKHV-L--------EGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccc----cchhhcCCcCeeeeee-e--------cccccccceEEecCCcceEEec
Confidence 9999998643221111100000000000 0000122223222211 0 123344555555552 145555
Q ss_pred eCCCeEEEEECCCCE--EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 815 GALGMVYLVDLIQVQ--LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 815 s~dG~I~vwdl~~~~--~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+.|..|++|.+...+ .+.+..+|.+.|.|+ +|....+++.|+|++|+|||+...+.+.++....++-+.++-+|..
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l 304 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL 304 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence 556666666554433 345667999999999 5566899999999999999999999999998888999999999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q psy3053 891 KRLISGNLVGAPKLYATE 908 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl~ 908 (917)
+++++|- |+-+.||.++
T Consensus 305 NLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 305 NLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred ceeeeec-CCceEEEEEc
Confidence 8777664 5557788887
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=254.65 Aligned_cols=252 Identities=17% Similarity=0.261 Sum_probs=222.7
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+..+. ..+..+....-+|.+..|-+-.+++++|+.|..|+||+..+++.++.+..|..-|.+++.+|...+++++|
T Consensus 38 ~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS 116 (794)
T KOG0276|consen 38 QIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS 116 (794)
T ss_pred EEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence 57886543 56777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeccC-eeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 642 WDSCVVIYDVECG-RIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
.|-+|++||.+.+ .+.+++.||..-|.+++|.| |.+.+||+|-|++|+||.+.+. .+..+..+|...|.|+
T Consensus 117 DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-------~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 117 DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-------HPNFTLEGHEKGVNCV 189 (794)
T ss_pred CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-------CCceeeeccccCcceE
Confidence 9999999999865 77899999999999999999 6789999999999999999765 4556677999999999
Q ss_pred EEeCCC--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 720 AISKDN--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 720 ~~spdg--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
++-+.| .++++|+.|.++++||..+..+++++. +|...|..+.|+|.-..+++|++||+++||...+-+........
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g 268 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG 268 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC
Confidence 998855 699999999999999999999999999 99999999999999999999999999999998887666555543
Q ss_pred -CceEEEEEeC-CCEEEEEeCCCeEEE
Q psy3053 798 -EKLLCLSWAG-EEKVILGGALGMVYL 822 (917)
Q Consensus 798 -~~i~~l~~s~-~~~lv~gs~dG~I~v 822 (917)
+++.|++..+ ++.+++|...|.|.+
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 5688888764 445666666665543
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=247.54 Aligned_cols=250 Identities=19% Similarity=0.294 Sum_probs=220.5
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+.+.+|.+-|.|+++.|.+.++++|+.|++++|||+.+|++..++.||...|..+++++...++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
++.. +.+....+|-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+. +|..+|.++.+.|-...++
T Consensus 222 Le~n-------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 222 LEYN-------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred chhh-------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceE
Confidence 9876 3455567899999999999999999999999999999999999999998 9999999999998777788
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT 850 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~ 850 (917)
+|+.|++|++||++.|+. ..++..|...|.++ .|....
T Consensus 294 t~S~D~tvrlWDl~agkt----------------------------------------~~tlt~hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT----------------------------------------MITLTHHKKSVRALCLHPKENL 333 (460)
T ss_pred EecCCceEEEeeeccCce----------------------------------------eEeeecccceeeEEecCCchhh
Confidence 888888888877766643 33445566666666 667778
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLL 912 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll 912 (917)
+|+++.|. |+-|++..|..+..+.+|.+-|.+++...|| ++++|++.|.+.+||.+....
T Consensus 334 fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 334 FASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred hhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 88888886 9999999999999999999999999998775 899999999999999976543
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=270.20 Aligned_cols=284 Identities=20% Similarity=0.290 Sum_probs=252.5
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee-eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS-AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.|...+.+..|. +..+++++.|++|++|+..++..+.. +.+|.+.|.++++...+..+++|+.|.++++||..+|.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 366778888888 55799999999999999999999888 999999999999988788999999999999999999999
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
...+.+|.+.|.++...+ ..+++||.|.+|++|++.++ ..+....+|.++|.++..+ +.++++|+.||+
T Consensus 284 ~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-------~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-------ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-------ceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 999999999999999876 78899999999999999866 3444445599999999998 889999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCC-ceEEEEEeCCCEEEEE
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFEE-KLLCLSWAGEEKVILG 814 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~~-~i~~l~~s~~~~lv~g 814 (917)
|.+||+.+++++..+. +|.+.|.++.+.+. ..+++|+.|++|++||+++. +++....... -+.++...++ .++++
T Consensus 353 v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~-~Lvs~ 429 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN-FLVSS 429 (537)
T ss_pred EEEEEhhhceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc-eeEec
Confidence 9999999999999999 79999999988765 89999999999999999999 7776665544 3555555555 89999
Q ss_pred eCCCeEEEEECCCCEEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 815 GALGMVYLVDLIQVQLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 815 s~dG~I~vwdl~~~~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
+.||.|++||..++++++.+.+ |...|.++......+++++.||++++||+++++....+-.+
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 9999999999999999999998 78999999887788999999999999999999988876433
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=256.42 Aligned_cols=288 Identities=20% Similarity=0.284 Sum_probs=242.3
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
...+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..++|+++.+.++++.+++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 45678899999999999999999999999999999998766 6778888899999999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
++..+...++.||++.|+++.|......+++|+.|.+|+.||+....+ ....-..+.+..|+.+ ...+++
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C--------~kt~l~~S~cnDI~~~--~~~~~S 317 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC--------SKTVLPGSQCNDIVCS--ISDVIS 317 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe--------eccccccccccceEec--ceeeee
Confidence 999999999999999999999988777799999999999999977521 1122223344555554 567889
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
|..|+.|++||.++........ ..+.|+++..+++|..+++++.|.++.+.|+++.+....+...+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g------------ 383 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG------------ 383 (459)
T ss_pred cccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc------------
Confidence 9999999999999999988886 45699999999999999999999999999998765443221110
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC--CEEEEEEcC
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED--AISCVAWDE 888 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~--~V~slafSp 888 (917)
-..+|.-.-.+++|++.|+++||.||.|+||++.++++...+..... .|++++|+|
T Consensus 384 ----------------------~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 384 ----------------------FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ----------------------cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC
Confidence 01123323345599999999999999999999999999988876544 499999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q psy3053 889 KRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 889 dg~~LaSgs~DG~V~IWd 906 (917)
.|..|++++.++.+.+|.
T Consensus 442 sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 442 SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCchhhcccCCcceEecC
Confidence 999999999999999994
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=258.20 Aligned_cols=345 Identities=14% Similarity=0.197 Sum_probs=296.4
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCC-EEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC-TMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~-~Lasg 640 (917)
.+|+..++ +.+++++++...|+++.-+|-=..+|.|..+|+|.++++..++.+.+++...+.|++++|..||+ .+|+|
T Consensus 185 ql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 185 QLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 46775544 78899999999999999999999999999999999999999999999998889999999999987 56677
Q ss_pred ecccEEEEEEeccCeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC----------CccCC------
Q psy3053 641 CWDSCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS----------HMKPS------ 703 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~----------~~~~~------ 703 (917)
+..|.+.+||++..+.+..+. .|.+.|+...|.+....++|++.|..+++|=.+++.. ...+.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 778999999999988877766 7999999999999999999999999999885442110 00000
Q ss_pred ----------------------------------------------------cce-------------------------
Q psy3053 704 ----------------------------------------------------KSL------------------------- 706 (917)
Q Consensus 704 ----------------------------------------------------~~~------------------------- 706 (917)
++.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 000
Q ss_pred ------------eeecc------CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe--cCCCCCCeEEEEEec
Q psy3053 707 ------------VSQLD------LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL--SDDINASVNGVLFSE 766 (917)
Q Consensus 707 ------------~~~~~------h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l--~~~h~~~V~~v~fsp 766 (917)
..... .+..+++++.++-|++.+.|+..|.|-+|++.+|.....+ ...|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 00011 1256788999999999999999999999999999888877 347999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC-CCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE-
Q psy3053 767 DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL- 844 (917)
Q Consensus 767 dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si- 844 (917)
-++.+++++.+|.+..||..+...+........+.++..+. .+.++++..+-.|+++|..+.+.++.+.||.+.|+++
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT 583 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE
Confidence 99999999999999999999999888888999999988874 4467788899999999999999999999999999998
Q ss_pred -eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEecC
Q psy3053 845 -HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV-GAPKLYATE 908 (917)
Q Consensus 845 -s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D-G~V~IWdl~ 908 (917)
|+||++|++++.|++|++||+.++.++..+. -..+.+++.|||+|.+|||+..| .-|++|.-.
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 7799999999999999999999999998775 46788999999999999999988 679999754
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=255.70 Aligned_cols=254 Identities=13% Similarity=0.208 Sum_probs=223.0
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEEe
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasgs 641 (917)
+|+. .....-..++.|..+|+++.|+++|.+++||+.+|.|++|+..-. .++.+.. |...|.+++|+|++..+++++
T Consensus 122 LWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 122 LWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred EecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 6775 233344567899999999999999999999999999999997643 3444444 458999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.||+|+|||....+....+.||.-.|.+++|+|....|++||.|..|++||.+++ .++.+..+|...|..+.|
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-------~cl~tlh~HKntVl~~~f 272 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-------SCLATLHGHKNTVLAVKF 272 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-------chhhhhhhccceEEEEEE
Confidence 9999999999999998999999999999999999999999999999999999887 567778899999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEE--eecCC
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCN--KVFEE 798 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~--~~~~~ 798 (917)
++++++|++++.|..++++|+++.+.+..+. +|...|++++|+| ...++.+|+.||.|..|.+...+++.. ..+..
T Consensus 273 ~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~ 351 (464)
T KOG0284|consen 273 NPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG 351 (464)
T ss_pred cCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccc
Confidence 9999999999999999999999888888888 8999999999999 567889999999999999986666554 34678
Q ss_pred ceEEEEEeCCCEE-EEEeCCCeEEEEECC
Q psy3053 799 KLLCLSWAGEEKV-ILGGALGMVYLVDLI 826 (917)
Q Consensus 799 ~i~~l~~s~~~~l-v~gs~dG~I~vwdl~ 826 (917)
.|.+++|+|-|.+ ++|+.|.++++|.-.
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeeccC
Confidence 8999999997765 567888999999753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=278.54 Aligned_cols=266 Identities=13% Similarity=0.264 Sum_probs=222.7
Q ss_pred ccEEEEEEeccCeeeEE-----eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 643 DSCVVIYDVECGRIVTE-----LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~-----l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
+|.+++|+..+.+.... +.+|.+.|++++|+|+++++++|+.|++|++|+...................+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 67788888776554333 3458999999999999999999999999999997642111010011112233456899
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 718 CLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 718 ~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+++|++. +..+++|+.||+|++||+.+++.+..+. +|.+.|.+++|+| ++..|++|+.||+|++||++++..+....
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999874 7899999999999999999998888887 8999999999997 78999999999999999999998888877
Q ss_pred cCCceEEEEEeC--CCEEEEEeCCCeEEEEECCCCE-EEEEEecCCCceEEEee-cCCEEEEEeCCCeEEEEECcC----
Q psy3053 796 FEEKLLCLSWAG--EEKVILGGALGMVYLVDLIQVQ-LLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDVEC---- 867 (917)
Q Consensus 796 ~~~~i~~l~~s~--~~~lv~gs~dG~I~vwdl~~~~-~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~t---- 867 (917)
....+.++.|.+ ...+++|+.||.|++||+++.+ .+..+.+|...|.++.+ ++..+++|+.||+|++||+..
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccc
Confidence 777899999853 3468899999999999998865 56778899999999965 788999999999999999974
Q ss_pred --CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 868 --GRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 868 --g~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
..++..+.+|...+.+++|+|++.+|++|+.||.|++|+...
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 357888999999999999999999999999999999999753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=238.24 Aligned_cols=244 Identities=24% Similarity=0.377 Sum_probs=215.5
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
..+.+|.++|++++|+|+++++++++.||.|.+|++.++. .......|...+.++.|+++++.+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 4567899999999999999999999999999999997651 334455778888999999999999999999999
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeC
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~ 816 (917)
.+||+.+++....+. .|...+.++.|++++..+++++.++.+.+||+.+++...... +...+.++++++++.+++++.
T Consensus 76 ~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 76 RLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred EEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 999999887777777 778899999999998888888889999999999887776665 567899999999666655555
Q ss_pred -CCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEE
Q psy3053 817 -LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 817 -dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~L 893 (917)
+|.|++||+.+++.+..+..|...+.++ +++++.+++++.||.|++||+.+++.+..+..|...|.+++|+|++.++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 9999999999999999999999899888 4567789999999999999999999999998899999999999999999
Q ss_pred EEEeCCCcEEEEecCc
Q psy3053 894 ISGNLVGAPKLYATEF 909 (917)
Q Consensus 894 aSgs~DG~V~IWdl~~ 909 (917)
++++.||.|++|++..
T Consensus 235 ~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 235 ASGSEDGTIRVWDLRT 250 (289)
T ss_pred EEEcCCCcEEEEEcCC
Confidence 9988899999999984
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=255.15 Aligned_cols=275 Identities=18% Similarity=0.265 Sum_probs=236.0
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc-CC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HE 664 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~-H~ 664 (917)
+.|+.. +.||.| ....|.+|+..++........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |.
T Consensus 183 ldWss~-n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWSSA-NVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcccC-CeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 456633 344444 456899999999987776666688999999999999999999999999999999999999999 99
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
..|.+++|. +..+.+|+.|+.|..+|++....... ...+|...|..+.|++++.++|+|+.|+.+.|||...
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence 999999998 48899999999999999987622111 2678999999999999999999999999999999988
Q ss_pred CeeeEEecCCCCCCeEEEEEec-CCCEEEEEe--CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCCeE
Q psy3053 745 HLMTQQLSDDINASVNGVLFSE-DGCRVLSCG--NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALGMV 820 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s--~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I 820 (917)
..+...+. .|.+.|.+++|+| ....||+|+ .|++|++||..+|..+......+.|..+.|++.. .+++
T Consensus 333 ~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s------- 404 (484)
T KOG0305|consen 333 PEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS------- 404 (484)
T ss_pred ccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE-------
Confidence 88888887 8999999999999 566788775 5899999999999999888888888888888762 1111
Q ss_pred EEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 821 YLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 821 ~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
..|..++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.
T Consensus 405 -------------------------------thG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 405 -------------------------------THGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred -------------------------------ecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 1133466899999999999999999999999999999999999999999
Q ss_pred cEEEEecCc
Q psy3053 901 APKLYATEF 909 (917)
Q Consensus 901 ~V~IWdl~~ 909 (917)
++++|++-.
T Consensus 454 Tlrfw~~f~ 462 (484)
T KOG0305|consen 454 TLRFWNLFD 462 (484)
T ss_pred cEEeccccC
Confidence 999999854
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=264.69 Aligned_cols=258 Identities=23% Similarity=0.303 Sum_probs=215.5
Q ss_pred ccccCCccc-cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEec-cCCceeeeeeccccceEEEEEeCCCCEEEE
Q psy3053 562 NSWCDKSIL-EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSL-KTGRQERSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 562 ~~w~~~~~l-~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~-~t~~~~~~~~~~~~~V~sl~~spd~~~Las 639 (917)
.+|+....- ...+.+.+|...|.+++|+|+|+++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++.+++
T Consensus 184 ~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~S 263 (456)
T KOG0266|consen 184 RIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVS 263 (456)
T ss_pred EEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEE
Confidence 456652221 256677899999999999999999999999999999999 566889999999999999999999999999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC--ceE
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN--RIK 717 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~--~V~ 717 (917)
|+.|++|+|||+.+++++..+.+|.+.|++++|+++++.|++++.|+.|++||+.++... ......++.. .++
T Consensus 264 gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 264 GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-----CLKLLSGAENSAPVT 338 (456)
T ss_pred ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-----eeecccCCCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999887211 1122233333 599
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC---CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA---SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~---~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
+++|+|++.++++++.|+.+++||+..+....... +|.. .+.+...++.+.++++++.|+.|++||..++..+...
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 99999999999999999999999999999988888 4544 3444556779999999999999999999988776665
Q ss_pred ecC--CceEEEEEeCCCE-EEEEe--CCCeEEEEEC
Q psy3053 795 VFE--EKLLCLSWAGEEK-VILGG--ALGMVYLVDL 825 (917)
Q Consensus 795 ~~~--~~i~~l~~s~~~~-lv~gs--~dG~I~vwdl 825 (917)
... ..+..+++++... +++++ .|+.+++|..
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 544 5667777776544 44444 4778888864
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=259.73 Aligned_cols=275 Identities=21% Similarity=0.314 Sum_probs=248.8
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
+...+.+..|. +..+++|+.|++|++|+..++..+.. +.||.+.|+++++...+..+++||.|.++++||+.++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--- 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--- 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---
Confidence 44556677776 66899999999999999999999888 9999999999999877899999999999999999887
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
.+.....+|.+.|.++... ...+++|+.|.+|++|++.++..+..+. +|.++|.++..+ +..+++|+.|++
T Consensus 282 ----~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 282 ----ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred ----cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec--CCEEEEEecCce
Confidence 4666677899999998875 4578889999999999999999999998 699999999997 789999999999
Q ss_pred EEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEEeecCCEEEEEeCC
Q psy3053 780 LNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHFDNCTMLVGCWD 857 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~dg~~Lasgs~D 857 (917)
|++||+.+++++.... |...|.++.+.+...++.|+.|+.|++||+.+. +++.++.+|...+.++...++.|++++.|
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence 9999999999988755 678899999888559999999999999999999 99999999999999999999999999999
Q ss_pred CeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 858 SCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 858 G~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
|+|++||..+++++..+.+ |.+.|+++++. ...+++++.||.+++||+....
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 9999999999999999998 77899999887 5688999999999999998553
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=223.57 Aligned_cols=285 Identities=16% Similarity=0.224 Sum_probs=213.0
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec--ccEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW--DSCVV 647 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~--Dg~I~ 647 (917)
+++...+..-.+.|.++.|+++|..+++++.|.++++||..++++++++..+...+..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4455666667889999999999999999999999999999999999999999889999999888888877776 89999
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
..++.+.+.++.+.||...|++++.+|-+..++++|.|++|++||++... +.. .. +...-..++++|+|-+
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-------cqg-~l-~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-------CQG-LL-NLSGRPIAAFDPEGLI 154 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-------Cce-EE-ecCCCcceeECCCCcE
Confidence 99999999999999999999999999999999999999999999998541 111 11 1223346899999999
Q ss_pred EEEEECCCeEEEEECCCC--eeeEEec--CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCc----
Q psy3053 728 LAVGTEAGELIIWSLENH--LMTQQLS--DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK---- 799 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~--~~~~~l~--~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~---- 799 (917)
+|+|.....|++||++.- .+...+. .+.....+.+.|||||+.++.++..+.+++.|.-+|.....+.....
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 999998889999999864 2333332 24467899999999999999999999999999988876655443211
Q ss_pred eEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEE
Q psy3053 800 LLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 800 i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iw 863 (917)
....++.|++. +++|+.||+|.+|++.++..+..+.+ +.+++.|+.++.++..-++.+..+.+|
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFW 300 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEE
Confidence 12334444433 22333335555555555555555444 344445554444444444444444444
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=230.57 Aligned_cols=252 Identities=19% Similarity=0.246 Sum_probs=220.3
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+..+.+|.+.|..+.|+|+|..+|||+.|..|.+|++... ........+|.++|..+.|.++++.+++++.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------ccceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 4457799999999999999999999999999999997654 1233445699999999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC-CEEEEE
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE-EKVILG 814 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~-~~lv~g 814 (917)
++.||+++|+..+.++ .|..-|+++.-+.-|. ++.+++.||++++||+++...+..+....+++++.|... ..+++|
T Consensus 114 v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred EEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeec
Confidence 9999999999999998 8999999988555554 556788899999999999998888888889999999854 479999
Q ss_pred eCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcC----CeEEEEecCCCC----CEEEE
Q psy3053 815 GALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVEC----GRIVTELAGHED----AISCV 884 (917)
Q Consensus 815 s~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~t----g~~l~~l~~h~~----~V~sl 884 (917)
+-|+.|++||++.+.....+.||.++|+.+ +++|.++.+-+.|.++++||++. .+++..+.+|.. ....+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 999999999999999999999999999999 78999999999999999999863 345777777643 35678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 885 AWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 885 afSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
+|||+++.+.+|+.|..+++||..+ ..++.|
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEc
Confidence 9999999999999999999999986 455543
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=221.76 Aligned_cols=284 Identities=18% Similarity=0.245 Sum_probs=241.4
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee--eeccccceEEEEEeC-CCCEEEEEecccEEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS--AVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~--~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwd 650 (917)
+.+++|...|.+|+|+.+|..+++|+.|+++.+|+++..+.... ..+|...|-.++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45689999999999999999999999999999999987755443 456788888999987 457899999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
...++++..+....+.+ -+.|+|+|.+++.++.|..|...|.++. ...........+.-++|+.++++++.
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~--------~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY--------KIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc--------ceeehhcccceeeeeeecCCCCEEEE
Confidence 99999998887554444 5789999999999999999999998775 33334445567888999988888888
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
....|.|.|.....-+++..+. .|.....|+.|+|+|+++|+|+.|..+.+||+..-
T Consensus 165 t~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------------------- 221 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------------------- 221 (313)
T ss_pred ecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh----------------------
Confidence 8888999999999999999998 89999999999999999999999999998887532
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
-+++.+..+.-+|..+++ ||++||+|++|..|-|=++++|..+.+++ +.++-..++|+|
T Consensus 222 ------------------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP 282 (313)
T KOG1407|consen 222 ------------------ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP 282 (313)
T ss_pred ------------------hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence 233455567778887754 89999999999999999999999999998 788999999999
Q ss_pred CCCEEEEEeCC---------CcEEEEecC
Q psy3053 889 KRKRLISGNLV---------GAPKLYATE 908 (917)
Q Consensus 889 dg~~LaSgs~D---------G~V~IWdl~ 908 (917)
...+||-++.| |.|+++-+.
T Consensus 283 k~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 283 KRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCceeeEEecCCCCccccccceeEEecCC
Confidence 99999987654 567777554
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=224.41 Aligned_cols=254 Identities=18% Similarity=0.265 Sum_probs=212.2
Q ss_pred ccccCCc--cccceeee-ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC--ceeeeeeccccceEEEEEeCCCCE
Q psy3053 562 NSWCDKS--ILEPLHFC-HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG--RQERSAVLSSMTLSSLCILPDNCT 636 (917)
Q Consensus 562 ~~w~~~~--~l~~~~~l-~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~~~~~~~~V~sl~~spd~~~ 636 (917)
++|+... ...+...+ .+|+..|.+++|+|.|++|++||.|.++.||.-..+ +++..+.+|...|.|++|+++|++
T Consensus 40 riw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 40 RIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred EEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 5666542 23344444 589999999999999999999999999999987654 568889999999999999999999
Q ss_pred EEEEecccEEEEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 637 MLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
||+++.|.+|.||.+..+ .+...+++|+..|..+.|+|....|+|+|.|.+|++|+-..+ ..........+|.
T Consensus 120 LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d----ddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 120 LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD----DDWECVQTLDGHE 195 (312)
T ss_pred EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC----CCeeEEEEecCcc
Confidence 999999999999999854 567889999999999999999999999999999999987632 1234566677899
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EE
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QV 791 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i 791 (917)
..|.+++|++.|..+++++.|++++||-..+ .+...|...+..++|. ...|++++.|+.|+++.-..+. +.
T Consensus 196 ~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 196 NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred ceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCch
Confidence 9999999999999999999999999998652 3344577899999998 4589999999999999765431 11
Q ss_pred ------EEeecCCceEEEEEeC--CCEEEEEeCCCeEEEEECC
Q psy3053 792 ------CNKVFEEKLLCLSWAG--EEKVILGGALGMVYLVDLI 826 (917)
Q Consensus 792 ------~~~~~~~~i~~l~~s~--~~~lv~gs~dG~I~vwdl~ 826 (917)
....|...|+++.|+| .+.+++|+.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1234667899999998 6789999999999999864
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=223.06 Aligned_cols=251 Identities=18% Similarity=0.227 Sum_probs=219.3
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
....+..|.++|.++.|+-+|++.++++.|.+|++|+...+ ..+....+|..+|..++.+.|+..+++|+.|.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCc
Confidence 34567889999999999999999999999999999998766 45666788999999999999999999999999
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEee-cCCceEEEEEeCCCEEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNKV-FEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~~-~~~~i~~l~~s~~~~lv 812 (917)
.+.+||+.+|+..+.+. +|.+.|+.+.|+.+...+++|+-|.++++||.++.. +++.+. ....+.++..+.. .++
T Consensus 82 ~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-eIv 159 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-EIV 159 (307)
T ss_pred eEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-EEE
Confidence 99999999999999999 999999999999999999999999999999998753 444332 3456888888877 899
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE--EEEEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI--SCVAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V--~slafSpdg 890 (917)
+|+.||+++.||++.|+.....-+|.-...++++|++..++++.|+++++.|-++|+++..++||...= ...+++...
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 999999999999999998887777665555558899999999999999999999999999999997753 445677778
Q ss_pred CEEEEEeCCCcEEEEecC-cceEEEE
Q psy3053 891 KRLISGNLVGAPKLYATE-FYLLYVL 915 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl~-~~ll~~L 915 (917)
..+++|+.||.|.+||+. ..++..+
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeee
Confidence 899999999999999996 4454444
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=231.91 Aligned_cols=289 Identities=15% Similarity=0.210 Sum_probs=237.6
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC------------C------ceeeeeeccccceEEEEEeCCCC
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT------------G------RQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t------------~------~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
..+..|++++.+.+||+||.++||||.|..|+|.|++. | -.++++..|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45688999999999999999999999999999999861 1 23567778999999999999999
Q ss_pred EEEEEecccEEEEEEeccCeeeEEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
+|++|+.|++|+++|.......+.++ ....+|.++.|+|.|.+|+.|..-.++++||+++.++-... .....|.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----nPd~qht 261 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----NPDDQHT 261 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec----Ccccccc
Confidence 99999999999999987543322222 24568999999999999999999999999999886322111 1235688
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN-ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~-~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
+.|+++.+++.|++.++|+.||.|++||--+++++.++...|. ..|.+..|..+|+++++.+.|..+++|.+.++..+.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 9999999999999999999999999999999999999987776 478999999999999999999999999999999887
Q ss_pred EeecCCc------eEEEEEe-CCCEEEEE-eCCCeEEEEECCCCEEEEEE-ecCCCceEEE--eecCCEEEEEeCCCeEE
Q psy3053 793 NKVFEEK------LLCLSWA-GEEKVILG-GALGMVYLVDLIQVQLLKQV-RAHKDAVLSL--HFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 793 ~~~~~~~------i~~l~~s-~~~~lv~g-s~dG~I~vwdl~~~~~i~~l-~~h~~~V~si--s~dg~~Lasgs~DG~I~ 861 (917)
.....+. -+...|+ .+.+++.- -..+.+.-||.+++..+..+ .+|.+.+.++ +|.+.-+++++.|-.++
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 7654321 1222333 23344433 34588999999998776655 4899999999 88999999999999999
Q ss_pred EEECc
Q psy3053 862 IYDVE 866 (917)
Q Consensus 862 Iwdl~ 866 (917)
+|--+
T Consensus 422 FWyrr 426 (430)
T KOG0640|consen 422 FWYRR 426 (430)
T ss_pred eeeec
Confidence 99643
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=259.00 Aligned_cols=289 Identities=18% Similarity=0.256 Sum_probs=241.7
Q ss_pred cccceEEEEEeCCCCEEEEEe--cccEEEEEEecc------------CeeeEEeccCCCceeEEEecCCCCEEEEEECCC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGC--WDSCVVIYDVEC------------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDC 686 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs--~Dg~I~Iwdl~t------------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg 686 (917)
+...|.++..+||+..+|+|+ .||.++||+.+. .+.+.++..|.+.|+|+.|++||++||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345588999999999999999 899999998652 244567778999999999999999999999999
Q ss_pred eEEEEeCCCC-----------CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCC
Q psy3053 687 TVRVWNTGAS-----------WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI 755 (917)
Q Consensus 687 tI~vWdl~~~-----------~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h 755 (917)
.|.+|+.... ..............+|+..|..++|+|++.++++++.|++|.+|+..+.+.+..+. +|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee-cc
Confidence 9999998731 01122334566678999999999999999999999999999999999998888888 99
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-------cCCceEEEEEeCCCEEEEEe-----CCCeEEEE
Q psy3053 756 NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-------FEEKLLCLSWAGEEKVILGG-----ALGMVYLV 823 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-------~~~~i~~l~~s~~~~lv~gs-----~dG~I~vw 823 (917)
.+.|..+.|.|-|+++++-+.|++|++|++.+-.....+. .......++|+|+|.+++.. ....+.+.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999976644443332 23347889999999876543 23578899
Q ss_pred ECCCCEEEEEEecCCCceEEEeec---------------CC----EEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEE
Q psy3053 824 DLIQVQLLKQVRAHKDAVLSLHFD---------------NC----TMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISC 883 (917)
Q Consensus 824 dl~~~~~i~~l~~h~~~V~sis~d---------------g~----~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~s 883 (917)
+-.+.+.-..+.||.+++.++.++ +. .+|+|+.|++|.||.....+++..... ....|.+
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 998889899999999999999441 11 688999999999999988887765532 3568999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
++|+|||..|+.+|.||+|.+..++..
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 999999999999999999999998744
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-26 Score=258.21 Aligned_cols=285 Identities=19% Similarity=0.297 Sum_probs=215.0
Q ss_pred cceeeec-cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccc----------cceEEEEEeC---CCC-
Q psy3053 571 EPLHFCH-SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSS----------MTLSSLCILP---DNC- 635 (917)
Q Consensus 571 ~~~~~l~-~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~----------~~V~sl~~sp---d~~- 635 (917)
...+.+. +|+++|.++.||+||++||+||.||.|+||.+...+....-.+.. ..+..+..++ .++
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 999999999999999999999999999999986533211110000 0011111111 001
Q ss_pred -EEEEEecccEEEEEEec---cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 636 -TMLVGCWDSCVVIYDVE---CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 636 -~Lasgs~Dg~I~Iwdl~---tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
..-.+.....+.+-+.. ..++++.+.||.+.|..+.|+.+ ++|+++|.|.||++|++... .++..+.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--------~CL~~F~ 407 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--------ECLKVFS 407 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--------ceeeEEe
Confidence 11112222222211111 24677889999999999999964 79999999999999999765 6677889
Q ss_pred CCCceEEEEEeC-CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 712 LDNRIKCLAISK-DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 712 h~~~V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
|.+-|+|++|+| |.+++++|+-||.|+||++...+.+.-.. ...-|++++|.|||+..++|+.+|.+++|+....+.
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 999999999999 67999999999999999998877665554 458899999999999999999999999999987766
Q ss_pred EEEee---------cCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEEecCCCceE----EEeecCCEEEEEe
Q psy3053 791 VCNKV---------FEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL----SLHFDNCTMLVGC 855 (917)
Q Consensus 791 i~~~~---------~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~----sis~dg~~Lasgs 855 (917)
..... ...+|+.+.+.|.. .+++.+.|..|+|+|.++..++..++|+...-. +++.||++|++|+
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 54432 12369999887532 599999999999999999999988887544332 3356999999999
Q ss_pred CCCeEEEEECc
Q psy3053 856 WDSCVVIYDVE 866 (917)
Q Consensus 856 ~DG~I~Iwdl~ 866 (917)
+|..|++|+..
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999973
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=240.57 Aligned_cols=281 Identities=18% Similarity=0.255 Sum_probs=240.1
Q ss_pred eeeeeccccceEEEEEeCCC-CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 615 ERSAVLSSMTLSSLCILPDN-CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
+..+.+|..+|.|++=+|.. ..+++|+.||.|++||+....+..++.+|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34566788899999999977 7899999999999999999999999999999999999987 78899999999999998
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC-CCEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED-GCRVL 772 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd-g~~L~ 772 (917)
... ........+.+..++-+..+..+++++.+ |.|||.....++..+. -....|.++.|+|. ...|+
T Consensus 137 ~~~---------p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 137 DGP---------PLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCC---------cceeeeccccccccccccccccccccCce--eeecccccCCccceee-cCCCceeEEecCCCcchhee
Confidence 652 22233445667788877778888888764 9999999888888887 55678999999995 45677
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCE-EEEEEecCCCceEEE--eecC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQ-LLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~-~i~~l~~h~~~V~si--s~dg 848 (917)
+|+.|+.|.+||++++.++.........+.++|+|+.. +++|+.|..++.+|++... ++....+|.++|.++ +|-|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 77899999999999999999999999999999999765 6788899999999998864 677788999999999 7789
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+-+++||.|.+|+||.+..+.....+.. -...|.++.||.|.++++|||+||.|++|....
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 9999999999999999987765443321 134699999999999999999999999999863
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=240.98 Aligned_cols=296 Identities=18% Similarity=0.238 Sum_probs=226.1
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce----eeeee-ccccceEEEEEeCCCCEEEEEecccEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ----ERSAV-LSSMTLSSLCILPDNCTMLVGCWDSCVVI 648 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~----~~~~~-~~~~~V~sl~~spd~~~Lasgs~Dg~I~I 648 (917)
..+++|+..|+++++.|.|.++++||.|.+|++||+..... .+.+. .....|.++.|++.+..|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 45789999999999999999999999999999999864321 12222 24567999999999999999999999999
Q ss_pred EEeccCeeeE------------EeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 649 YDVECGRIVT------------ELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 649 wdl~tg~~i~------------~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
+|-+...... .-+||...++|.+|+|.. ..++|++.||++++||+......... .......+..-+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV-ik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV-IKTKPAGGKRVP 319 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-EeeccCCCcccC
Confidence 9977544332 235899999999999964 57899999999999999775311110 011112244567
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCC--eeeEEecCCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE-
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENH--LMTQQLSDDINA--SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ- 790 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~--~~~~~l~~~h~~--~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~- 790 (917)
++.++|+++|+.||+|+.||.|.+|+..+. .+...+...|.. .|+||+||+||++|++-+.|+++++||++..+.
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 899999999999999999999999998543 334444556766 999999999999999999999999999986432
Q ss_pred EEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe------CCCeEEEEE
Q psy3053 791 VCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC------WDSCVVIYD 864 (917)
Q Consensus 791 i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs------~DG~I~Iwd 864 (917)
+..... ........-.|++|+.++|++|+ ..|.+.+||
T Consensus 400 L~~~tg------------------------------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 400 LNVRTG------------------------------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred hhhhcC------------------------------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 111000 00011122234466666666654 357899999
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
..+-..+..+.-....|..+.|+|.-+.|..|+.||+++|+=
T Consensus 444 ~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 444 RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999998887788999999999999999999999999863
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=226.68 Aligned_cols=287 Identities=15% Similarity=0.224 Sum_probs=235.3
Q ss_pred eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc------------C------eeeEEeccCCCceeEEEecCCCC
Q psy3053 616 RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC------------G------RIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t------------g------~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
..+..|..++.+.+|++||.++|+|+.|.+|+|.|++. | -.++++..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 44667899999999999999999999999999999872 1 24667788999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--CCC
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS--DDI 755 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h 755 (917)
.|++|+.|++|+++|..... .+..........+|.+++|+|.|.++++|+...++++||+++.++..... ..|
T Consensus 186 ILiS~srD~tvKlFDfsK~s-----aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTS-----AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred eEEeccCCCeEEEEecccHH-----HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 99999999999999986541 11222234456789999999999999999999999999999987765443 368
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee--c-CCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEE
Q psy3053 756 NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV--F-EEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~--~-~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i 831 (917)
.+.|+++.+++.|++.++++.||.|++||--+++++..+. | ...|.+..|..++ ++++.+.|..+++|.+.+++.+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8999999999999999999999999999998888876654 3 3457777887665 4678889999999999999999
Q ss_pred EEEecCCCc--e----EEE-eecCCEEEEEe-CCCeEEEEECcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy3053 832 KQVRAHKDA--V----LSL-HFDNCTMLVGC-WDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAP 902 (917)
Q Consensus 832 ~~l~~h~~~--V----~si-s~dg~~Lasgs-~DG~I~Iwdl~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V 902 (917)
..+.|.... . .++ .....+++.-. ..++++-||.+++..+..+ .+|.+++..+.-||.+.-++||+.|-.+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 998764211 1 111 22455555544 3578999999988776654 5799999999999999999999999999
Q ss_pred EEEec
Q psy3053 903 KLYAT 907 (917)
Q Consensus 903 ~IWdl 907 (917)
++|--
T Consensus 421 RFWyr 425 (430)
T KOG0640|consen 421 RFWYR 425 (430)
T ss_pred eeeee
Confidence 99964
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=241.27 Aligned_cols=338 Identities=15% Similarity=0.198 Sum_probs=267.4
Q ss_pred ccCCcceEEEEEeCCC--cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 577 HSHKEAITAVAICGEG--ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg--~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
+.-.+.|+++. +|.. +.++.|+.+|.+++|++.+++.+.++......|+++.-+|-=..+|.|..+|+|.++++..+
T Consensus 156 ~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 156 KVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred eccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence 33333477764 4543 67889999999999999999999999999999999999998899999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCCE-EEEEECCCeEEEEeCCCCCCCcc---------------CC---------------
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKR-LISGSWDCTVRVWNTGASWSHMK---------------PS--------------- 703 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~-L~Sgs~DgtI~vWdl~~~~~~~~---------------~~--------------- 703 (917)
+.+.+++...+.|++++|..||+. +++|+..|.+.+||++....... +.
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV 314 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence 999999855699999999988874 56677779999999876421000 00
Q ss_pred ----------cceeeeccCCCceEEEEEe-CCCCEEEEEECCCeEEEEECC-----------------------------
Q psy3053 704 ----------KSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLE----------------------------- 743 (917)
Q Consensus 704 ----------~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~dG~I~iwDl~----------------------------- 743 (917)
..+....+|..+..|+.|. .+|..+.+++.|++.+.+++.
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence 1111234677777778776 466777777777766555432
Q ss_pred ------------------------------------CCee-eEEecC----CCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 744 ------------------------------------NHLM-TQQLSD----DINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 744 ------------------------------------~~~~-~~~l~~----~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
+... ...+.. .....+++++.++.|++.+.|...|.|.+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 1100 011110 02357889999999999999999999999
Q ss_pred EECCCCeEEEEe----ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEe
Q psy3053 783 YDLTTGMQVCNK----VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGC 855 (917)
Q Consensus 783 wDl~tg~~i~~~----~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs 855 (917)
|++.+|-....+ .+.++++.++.++-+ .+++++.+|.+.+||..+..++..+.- ...+.++ +-....++.+.
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhc
Confidence 999999887776 678899999999754 578899999999999999888877763 2334444 55677899999
Q ss_pred CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEEe
Q psy3053 856 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVLT 916 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~Lt 916 (917)
+|-.|+++|..+.+.++.+.||++.|++++|||||++|++++.|++|++||+-+ .++-.+.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 999999999999999999999999999999999999999999999999999974 4655553
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=221.26 Aligned_cols=275 Identities=17% Similarity=0.273 Sum_probs=226.9
Q ss_pred EEEEEeCC-CCEEEEEe-------cccEEEEEEeccCeeeEEec--cCCCceeEEEecCC-CCEEEEEECCCeEEEEeCC
Q psy3053 626 SSLCILPD-NCTMLVGC-------WDSCVVIYDVECGRIVTELA--GHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 626 ~sl~~spd-~~~Lasgs-------~Dg~I~Iwdl~tg~~i~~l~--~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~ 694 (917)
.++.|+|- .++||++. ..|.+.|.++..++-+.... .-.+.+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57788882 33444432 36899999997554444433 24678999999985 5688999999999999964
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEE
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVL 772 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~ 772 (917)
.. ..++....+|..+|.++.|++ .+..+++++.||+|++|+...++.+.++. +|...|...+|+| .++.++
T Consensus 92 ~~------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 92 MP------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred CC------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEE
Confidence 33 345666788999999999998 45678888999999999999999999998 8999999999999 678999
Q ss_pred EEeCCCeEEEEECCC-CeEEEEeecCCceEEEEEeC--CCEEEEEeCCCeEEEEECCCCE-EEEEEecCCCceEEEee--
Q psy3053 773 SCGNNCMLNVYDLTT-GMQVCNKVFEEKLLCLSWAG--EEKVILGGALGMVYLVDLIQVQ-LLKQVRAHKDAVLSLHF-- 846 (917)
Q Consensus 773 s~s~Dg~I~iwDl~t-g~~i~~~~~~~~i~~l~~s~--~~~lv~gs~dG~I~vwdl~~~~-~i~~l~~h~~~V~sis~-- 846 (917)
+++.|+++++||++. |+.+....+...+.|+.|+. ...+++|+.|+.|+.||+++.+ ++..+.+|.-+|..+.+
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 999999999999975 55555556677999999984 4578999999999999999864 68888999999999944
Q ss_pred -cCCEEEEEeCCCeEEEEECcCC-eEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEec
Q psy3053 847 -DNCTMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDE-KRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 847 -dg~~Lasgs~DG~I~Iwdl~tg-~~l~~l~~h~~~V~slafSp-dg~~LaSgs~DG~V~IWdl 907 (917)
....|++++.|-+++|||...+ ..+.+...|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4567999999999999999854 45667788999999999998 6779999999999999984
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=247.87 Aligned_cols=253 Identities=17% Similarity=0.319 Sum_probs=219.2
Q ss_pred CceeeeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEecc-CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEE
Q psy3053 612 GRQERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVR 689 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~ 689 (917)
.+.+..+.+|...|+++.|.| .+.+|++|+.|+.|+||++-. +++++++.+|..+|.+++|+++|..++|+|.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 355677889999999999999 889999999999999999876 899999999999999999999999999999999999
Q ss_pred EEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC
Q psy3053 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 690 vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg 768 (917)
+||++++ ........+..++|+.++|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|-++|
T Consensus 284 lwDtETG--------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 284 LWDTETG--------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEG 354 (503)
T ss_pred eeccccc--------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCC
Confidence 9999998 455556677889999999998 899999999999999999999998887 788999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecC
Q psy3053 769 CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDN 848 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg 848 (917)
+.+++++.|++++||+.+.+..+.. +.....|+-+...++|++
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~-------------------------------------i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKN-------------------------------------IADPEMHTMPCLTLHPNG 397 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchh-------------------------------------hcchhhccCcceecCCCC
Confidence 9999999999999999877654421 112234666777778999
Q ss_pred CEEEEEeCCCeEEEEECcCC---eEEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 849 CTMLVGCWDSCVVIYDVECG---RIVTELAGHED--AISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg---~~l~~l~~h~~--~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.++++-+.|+.|.++.+... .....+.||.. --..+.|||||.+|++|+.||.+.+||.++.
T Consensus 398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 99999999999999986533 23345677753 4567899999999999999999999999865
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=242.61 Aligned_cols=319 Identities=16% Similarity=0.195 Sum_probs=253.0
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCCcee---eeeeccccceEEEEEeCC-----------CCEEEEEecccEEEEE
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTGRQE---RSAVLSSMTLSSLCILPD-----------NCTMLVGCWDSCVVIY 649 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~---~~~~~~~~~V~sl~~spd-----------~~~Lasgs~Dg~I~Iw 649 (917)
.++.|++....|.+.-.|..+.|||+.+-..+ ..+..|...|+++...|- ..-+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 46789998889999999999999999875443 344557777777665441 1357899999999999
Q ss_pred EeccCeeeEEe-------------------------------------ccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 650 DVECGRIVTEL-------------------------------------AGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 650 dl~tg~~i~~l-------------------------------------~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+++.+..-..+ -+..-.+.+++.+|+|++||+|..-|+++|++
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 99863111100 02334689999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC-
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG- 768 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg- 768 (917)
+... ........|+..|.|+.++.. .++||+++.|.-|.++|+...-.+.....+|...|+++.|.-+|
T Consensus 488 Lq~l-------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 488 LQEL-------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred ehhh-------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 8664 234445679999999999873 57899999999999999976544433334899999999999887
Q ss_pred -CEEEEEeCCCeEEEEECC---CCeEEEE---eecCCceEEEEEeCC-CEEEEEeCCCeEEEEECCCCEEEEEEec---C
Q psy3053 769 -CRVLSCGNNCMLNVYDLT---TGMQVCN---KVFEEKLLCLSWAGE-EKVILGGALGMVYLVDLIQVQLLKQVRA---H 837 (917)
Q Consensus 769 -~~L~s~s~Dg~I~iwDl~---tg~~i~~---~~~~~~i~~l~~s~~-~~lv~gs~dG~I~vwdl~~~~~i~~l~~---h 837 (917)
..+++++.|..+..-..+ +|..... ......+..++.+|. +.+++++.|..|++|++.+++..+.+++ |
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence 788999999876543222 1222111 112345788888875 4678999999999999999999999975 4
Q ss_pred CCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 838 KDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 838 ~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
.+....+ .|.|.++++.+.|.++.++|..+|+++.+..||+..|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 4444444 88999999999999999999999999999999999999999999999999999999999999864
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=221.59 Aligned_cols=264 Identities=19% Similarity=0.337 Sum_probs=225.4
Q ss_pred EEEEEecccEEEEEEeccC------------eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC
Q psy3053 636 TMLVGCWDSCVVIYDVECG------------RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg------------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
.+++|+....|.-+++.-. ..+..+..|.++|++++.+ +.++||||.|-+|+|||+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~------- 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR------- 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch-------
Confidence 3566777776666665421 1245567899999999995 599999999999999999775
Q ss_pred cceeeeccCCCceEEEEEeCCCC--EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNN--QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLN 781 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~--~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~ 781 (917)
.+......|.+.|+++.|.+... .|++|+.||.|.+|+......+..+. +|.+.|+.++.+|.|++-++.+.|+.++
T Consensus 74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceee
Confidence 45566778999999999999765 99999999999999999999999998 8999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee-cCCEEEEEeCCCeE
Q psy3053 782 VYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCV 860 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I 860 (917)
.|++-+|+.-...........+.|++.|..++......|-+|.+.+.+....+... ..+.|+.+ ++..+++|++|+.|
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWI 231 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceE
Confidence 99999998877777777777799999887666666778999999887766655433 55667755 78999999999999
Q ss_pred EEEECcCCeEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 861 VIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~~~V~slaf--Spdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+||.+++.+...+.+|..+|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 232 ~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 232 SLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999999999999999999984 578899999999999999999865
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=234.10 Aligned_cols=296 Identities=19% Similarity=0.293 Sum_probs=238.2
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee----e-------------e-eccccceEEEEEeCCC
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER----S-------------A-VLSSMTLSSLCILPDN 634 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~----~-------------~-~~~~~~V~sl~~spd~ 634 (917)
...+..|.-+|+|++++|+++++++++.+|+|.=|++.+|+..+ + - ..|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45678899999999999999999999999999999998776331 1 1 2566778999999999
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...+.++++|.|++|++|++... .......+|.+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-------s~vetlyGHqd 287 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-------SYVETLYGHQD 287 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-------HHHHHHhCCcc
Confidence 99999999999999999999999999999999999999988899999999999999998764 34556789999
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
.|.++....-++.+.+|+.|+++++|++... .+.+..++.+.+.|++|-.+ ..+++|+.+|.|.+|++...+++...
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 9999999999999999999999999999443 23333367889999999765 48899999999999999888777654
Q ss_pred ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC----
Q psy3053 795 VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG---- 868 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg---- 868 (917)
.....+.. .. + -..+...|+++ .+...++++|+.+|.|++|.+..+
T Consensus 365 ~~AHgv~~-----~~--------------~---------~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 365 RLAHGVIP-----EL--------------D---------PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred eccccccC-----Cc--------------c---------ccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 43322210 00 0 01122467777 568889999999999999999877
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEec
Q psy3053 869 RIVTELAGHEDAISCVAWDEKRKRLISG-NLVGAPKLYAT 907 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpdg~~LaSg-s~DG~V~IWdl 907 (917)
+++..+. -.+-|++++|+++|+.+++| |....+--|-.
T Consensus 417 ~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 417 NLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 3455555 56789999999999976665 55555544544
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=235.01 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=237.5
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
..+|++++|+|...+=++....-.+.+|+..+......+....+.|.+++|..||++++.|...|.|+++|..+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r----- 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR----- 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----
Confidence 467999999996554333333467999999888888878888899999999999999999999999999996542
Q ss_pred CCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC-CCEEEEEeCCCe
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED-GCRVLSCGNNCM 779 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~ 779 (917)
..+.....|..++..+.|+|.+ ..+++|+.|+.+++||+.+......+. +|.+.|.+.+|+|. +..+++||.||.
T Consensus 101 --~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 101 --VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred --HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCce
Confidence 2445567899999999999965 677888899999999999988754666 99999999999995 558899999999
Q ss_pred EEEEECCCC-eEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEEee--cCCEEEEEe
Q psy3053 780 LNVYDLTTG-MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHF--DNCTMLVGC 855 (917)
Q Consensus 780 I~iwDl~tg-~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~--dg~~Lasgs 855 (917)
|++||+++. ..+.++.++.+|..+.+-|.|.+++......|++||+.+| +.+.....|...|+|+.. ++..|++|+
T Consensus 178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 999999887 7888899999999999999988888888899999999955 555666669999999944 779999999
Q ss_pred CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 856 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
-||.|++||+.+-+.+..+. -.++|.+++.+|+++.++.|..||.+.+=+.
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 99999999998888888886 6789999999999999999999999877643
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=229.54 Aligned_cols=281 Identities=20% Similarity=0.217 Sum_probs=239.2
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
...|+++...+..+.++||+.|..+.++|..+++.+..+.+|...|.++.++|+...+++++.|..|+||..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 45788888888888999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec--cCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL--DLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
...|.++|+.+..+|.|.||+++|.||+..+.|++++. .+.... ..+-.+++.+|+|||.++.+|+.||.+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-------EEEEEeeccccceeEEeeEcCCceEEeccCCCceE
Confidence 88999999999999999999999999999999998872 221111 234568999999999999999999999
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCC
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGAL 817 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~d 817 (917)
++||+.++..+..+. +|.++|..++|+.+|-++++++.|+.|++||++..+....+....
T Consensus 372 kiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~------------------- 431 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE------------------- 431 (506)
T ss_pred EEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-------------------
Confidence 999999999888888 799999999999999999999999999999998665433322221
Q ss_pred CeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECc--CCeEEEEecCCCCCEEEEEEcCCCCEE
Q psy3053 818 GMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVE--CGRIVTELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 818 G~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~--tg~~l~~l~~h~~~V~slafSpdg~~L 893 (917)
...+.++ ...|.++++++.|=.|++++-. +.+.+..+..|++..+++.|....+++
T Consensus 432 --------------------~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 432 --------------------KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYL 491 (506)
T ss_pred --------------------cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEE
Confidence 1123333 3458888888777666666633 456777888899999999999999999
Q ss_pred EEEeCCCcEEEEec
Q psy3053 894 ISGNLVGAPKLYAT 907 (917)
Q Consensus 894 aSgs~DG~V~IWdl 907 (917)
+++|.|..++++.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 99999999888764
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=235.05 Aligned_cols=275 Identities=19% Similarity=0.289 Sum_probs=230.8
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
.++|++++|||...+=++....-.+.+|+..+....+.+.--...+.++.|..||+++|+|...|.|+|+|..+...+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 35899999999664322223346789999988877777777778899999999999999999999999999777667888
Q ss_pred eccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeE
Q psy3053 660 LAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGEL 737 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I 737 (917)
+.+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+. .......+|.+.|.|.+|+|.. .++++|+.||.|
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-------EEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 9999999999999995 557788999999999999886 2344577999999999999965 588999999999
Q ss_pred EEEECCCC-eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEee-cCCceEEEEEeCC-CEEEE
Q psy3053 738 IIWSLENH-LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKV-FEEKLLCLSWAGE-EKVIL 813 (917)
Q Consensus 738 ~iwDl~~~-~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~-~~~~i~~l~~s~~-~~lv~ 813 (917)
++||++.. ..+.++ .|..+|..+.+-|.|..+++++.. .+++||+.+| +.+.... |...|+|+.+..+ ..+++
T Consensus 179 rl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred EEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence 99999987 555555 589999999999999999998754 7999999855 5555444 8888999999864 47999
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
|+-||.|++||..+.+.+..+. -.++|.++ +++++.++.|..||.+.+-+.
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999999999888876 46778777 889999999999998877643
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=219.01 Aligned_cols=259 Identities=18% Similarity=0.283 Sum_probs=222.7
Q ss_pred eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC--EEEEEECCCeEEEEe
Q psy3053 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK--RLISGSWDCTVRVWN 692 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~--~L~Sgs~DgtI~vWd 692 (917)
+..+..|.+++++++. ++.++|+|+.|-+|+|||+...+....+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3455678899999987 588999999999999999999999999999999999999988654 899999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
...- ..+.....|.+.|+.++++|.|++.++.+.|+.++.|++-+|+.-..+. .....+.+.|+|.|.+++
T Consensus 114 ~~~W-------~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 114 VGSW-------ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGDHFV 184 (362)
T ss_pred cCCe-------EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCCEEE
Confidence 8653 4566678899999999999999999999999999999999988766655 233344599999999998
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe----ecC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH----FDN 848 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis----~dg 848 (917)
.++.+ .|-+|.+.+.........+.++.|+.|...+.+++|+.++.|.+||..+..+...+.+|...|-++. +++
T Consensus 185 v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 88876 5899999888877777778889999999998999999999999999999999999999999999994 366
Q ss_pred CEEEEEeCCCeEEEEECcCC-----eEEEEecCCCCCEEEEEE
Q psy3053 849 CTMLVGCWDSCVVIYDVECG-----RIVTELAGHEDAISCVAW 886 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg-----~~l~~l~~h~~~V~slaf 886 (917)
.+|++++.||.|+|||++.. +++..+.. ..+++|+..
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred eEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 89999999999999999866 45555543 456666654
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-23 Score=220.59 Aligned_cols=370 Identities=16% Similarity=0.276 Sum_probs=287.4
Q ss_pred hhhCCCccccccCCCCCccccccccccccc-cccccccccccCCccccceeeeccCCcceEEEEEeCC--CcEEEEE--e
Q psy3053 525 MEFGQIPKQIFHSPHPRRTLTSQSSLLKHS-TILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGE--GISVASV--G 599 (917)
Q Consensus 525 ~~fGQ~P~qLF~~pHP~r~~~~~~~~~~~~-~~f~d~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpd--g~~Lasg--s 599 (917)
...|..-......-||.|+.....+..... ..+....++|+..+ +..++.+..-...|+|++||+- |..++.. +
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-ceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence 345777777788889988765533322111 11122337899654 4566777777889999999984 4566554 3
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE---EeccC-CCceeEEEecCC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT---ELAGH-EDAISCVAWDEK 675 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~---~l~~H-~~~Vt~l~~spd 675 (917)
.+..+.+||++.+......+..+..|..+.|+|.+..+++.+..|.+.+|+.+.+...+ .+..+ ..-|.|++|.++
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN 257 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC
Confidence 46678999999988888888888899999999988888888889999999999886544 34433 357999999998
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe---------
Q psy3053 676 RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL--------- 746 (917)
Q Consensus 676 ~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~--------- 746 (917)
|. ++||..+|.|.||+..+. ........|++.|.+++.-.+|.++- |+.|..|..||-.-.+
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~-------~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTN-------RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred CC-EEeecCCceEEEEeCCCc-------eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence 75 679999999999998654 22333448999999999999998665 9999999999832110
Q ss_pred --eeEEe----------------------------cCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 747 --MTQQL----------------------------SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 747 --~~~~l----------------------------~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
.++.+ ..+|......++.+|+...+++++.|+.+++|+ ..++......
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 00000 014566778899999999999999999999999 6778888889
Q ss_pred CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC-eEEEE
Q psy3053 797 EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG-RIVTE 873 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg-~~l~~ 873 (917)
..+..|+.++|.+.+++|+..|...+.|..+...+..-.. ..+++++ +|+|.++|.|+.|+.|++|.+..+ .....
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 9999999999999999999999999999999665554444 7788887 789999999999999999998644 33333
Q ss_pred e-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 874 L-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 874 l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
. +.|.++|+.+.||+|+++|.+-+.|-.|..|.-
T Consensus 486 ~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 486 VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred eeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 3 234489999999999999999999999999944
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-25 Score=242.84 Aligned_cols=322 Identities=18% Similarity=0.289 Sum_probs=254.3
Q ss_pred EEEEe-CCCcEEEEEecCCceEEEeccCCc------eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC--e
Q psy3053 585 AVAIC-GEGISVASVGRDAMLKIHSLKTGR------QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG--R 655 (917)
Q Consensus 585 sv~fS-pdg~~Lasgs~Dg~I~IWd~~t~~------~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg--~ 655 (917)
++..+ |.+++|+|||.||.|++|+..... .+.++..|..-|..++...+++.++++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 356779999999999999986432 36678889999999999999999999999999999999877 5
Q ss_pred eeEEeccCCCceeEEEe-cCCCCEEEEEECCCeEEEEeCCCCCCCcc---CCcceeee-ccCCCceEEEEEeCCCCEEEE
Q psy3053 656 IVTELAGHEDAISCVAW-DEKRKRLISGSWDCTVRVWNTGASWSHMK---PSKSLVSQ-LDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~-spd~~~L~Sgs~DgtI~vWdl~~~~~~~~---~~~~~~~~-~~h~~~V~~l~~spdg~~Las 730 (917)
+..++..|.+.|.|++. .++...+||||-|+.|.+||++++..... ........ .++...|.+++.++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 77888999999999999 78888999999999999999997732110 01111112 278889999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCC-
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGE- 808 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~- 808 (917)
|+..+.+++||.++++.+..+. +|...|.++..++||..+++++.||+|++||+....++.+.. |...+.++..+++
T Consensus 189 Ggtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 9999999999999999999999 999999999999999999999999999999999888887754 5566888877765
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEEEEECcCC-------eEEEE------
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECG-------RIVTE------ 873 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg-------~~l~~------ 873 (917)
..+.+|+.||.|+.-|+++......+.....+|..+.. +.+-+-+++.|+.|+-|...-. .+...
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~ 347 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNN 347 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCC
Confidence 35889999999999999986544444445566666632 2344477888999999965321 11100
Q ss_pred ------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 874 ------------LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 874 ------------l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+.| ..+|...+.-.|.+.++|-...|.+.+||+-
T Consensus 348 ~~~~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 348 HSCDLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ccccccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 111 1234444555678999999999999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=239.26 Aligned_cols=279 Identities=16% Similarity=0.187 Sum_probs=201.8
Q ss_pred EEeCCCCEEEEEecccEEEEEEec----------cCeee---EEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCC
Q psy3053 629 CILPDNCTMLVGCWDSCVVIYDVE----------CGRIV---TELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 629 ~~spd~~~Lasgs~Dg~I~Iwdl~----------tg~~i---~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~ 694 (917)
..++++..+++++.+.....|+.. .|+.. ..+.+|.+.|++++|+| ++++|++||.||+|++||+.
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 344454444555545544455433 33322 24778999999999999 88999999999999999997
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
+...............+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. .|...|.+++|+|+|..|++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLat 185 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCT 185 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEE
Confidence 6522111223445567899999999999985 799999999999999999998888887 78899999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecC-C-ceEEEEEeCC-CEEEEEe----CCCeEEEEECCCCE-EEEEEecCCC-ceEE-
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKVFE-E-KLLCLSWAGE-EKVILGG----ALGMVYLVDLIQVQ-LLKQVRAHKD-AVLS- 843 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~~~-~-~i~~l~~s~~-~~lv~gs----~dG~I~vwdl~~~~-~i~~l~~h~~-~V~s- 843 (917)
++.|+.|++||+++++.+...... + ....+.|.++ +.+++++ .|+.|++||+++.. ++.....+.. .+..
T Consensus 186 gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~ 265 (493)
T PTZ00421 186 TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIP 265 (493)
T ss_pred ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEE
Confidence 999999999999999887765433 2 2345667654 4555543 47899999998764 3443333333 2322
Q ss_pred -EeecCCEEEEEe-CCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 844 -LHFDNCTMLVGC-WDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 844 -is~dg~~Lasgs-~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+++++.+++|+ .||.|++||+.+++.+..... +..++.+++|.|... +-...--..+++.+...
T Consensus 266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 266 FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 266889988887 599999999999988776543 456788999988532 11112223456666544
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=225.07 Aligned_cols=257 Identities=21% Similarity=0.377 Sum_probs=214.0
Q ss_pred cccccccccCCccccceeeeccCCcceEEEEEeCCC---cEEEEEecCCceEEEeccCCce----eeeeeccccceEEEE
Q psy3053 557 LSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEG---ISVASVGRDAMLKIHSLKTGRQ----ERSAVLSSMTLSSLC 629 (917)
Q Consensus 557 f~d~~~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg---~~Lasgs~Dg~I~IWd~~t~~~----~~~~~~~~~~V~sl~ 629 (917)
+....++|+... +...++.||.++|.++++-... ..++++|.|.++++|.++.++. +....+|..+|-++.
T Consensus 123 YDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 123 YDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVS 200 (423)
T ss_pred cCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEE
Confidence 445558898654 5678889999999988876443 3599999999999999987654 334458999999999
Q ss_pred EeCCCCEEEEEecccEEEEEEecc-------------------------CeeeEEeccCCCceeEEEecCCCCEEEEEEC
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVEC-------------------------GRIVTELAGHEDAISCVAWDEKRKRLISGSW 684 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~t-------------------------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~ 684 (917)
..+++..+++|++|.++.||+.++ +.++..+.||.++|.++.|++ ...++++|+
T Consensus 201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~Sw 279 (423)
T KOG0313|consen 201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSW 279 (423)
T ss_pred ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecc
Confidence 999999999999999999999321 123557889999999999997 678999999
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe--e-eEEecCCCCCCeEE
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL--M-TQQLSDDINASVNG 761 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~--~-~~~l~~~h~~~V~~ 761 (917)
|.+|+.||+.++ .............|++.+|..++|++|+.|..+++||.+++. . .+++. +|.+.|.+
T Consensus 280 DHTIk~WDletg--------~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~-gH~nwVss 350 (423)
T KOG0313|consen 280 DHTIKVWDLETG--------GLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI-GHKNWVSS 350 (423)
T ss_pred cceEEEEEeecc--------cceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee-cchhhhhh
Confidence 999999999987 333344556789999999999999999999999999998763 3 34444 89999999
Q ss_pred EEEec-CCCEEEEEeCCCeEEEEECCCCe-EEEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 762 VLFSE-DGCRVLSCGNNCMLNVYDLTTGM-QVCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 762 v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~-~i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
+.|+| +...|++++.|+++++||+++.. ++..+ .+..++.++.|...+.+++|+.|.+|+++.-
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 99999 45678899999999999999876 55544 4678899999999889999999999999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=242.16 Aligned_cols=245 Identities=14% Similarity=0.187 Sum_probs=183.7
Q ss_pred EecCCceEEEeccCCceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccCe--------eeEEeccCCCcee
Q psy3053 598 VGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECGR--------IVTELAGHEDAIS 668 (917)
Q Consensus 598 gs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg~--------~i~~l~~H~~~Vt 668 (917)
|+.++.+++|+......+..+.+|..+|.+++|+|+ +.+||+|+.||+|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998887788889999999999999997 7899999999999999997642 3456789999999
Q ss_pred EEEecCCCCE-EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee
Q psy3053 669 CVAWDEKRKR-LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM 747 (917)
Q Consensus 669 ~l~~spd~~~-L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~ 747 (917)
+++|+|++.. |++|+.|++|++||+.++. ......+...|.+++|+++|.+|++++.|+.|++||+++++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--------~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK--------RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCc--------EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 9999998875 5799999999999998761 122234567899999999999999999999999999999998
Q ss_pred eEEecCCCCCCeEE-----EEEecCCCEEEEEeCCC----eEEEEECCC-CeEEEEeecCCceEEEEEeCCCEEEEEeCC
Q psy3053 748 TQQLSDDINASVNG-----VLFSEDGCRVLSCGNNC----MLNVYDLTT-GMQVCNKVFEEKLLCLSWAGEEKVILGGAL 817 (917)
Q Consensus 748 ~~~l~~~h~~~V~~-----v~fspdg~~L~s~s~Dg----~I~iwDl~t-g~~i~~~~~~~~i~~l~~s~~~~lv~gs~d 817 (917)
+..+. +|.+.+.+ ..|++++.++++++.|+ .|++||+++ +.++....+.
T Consensus 202 i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-------------------- 260 (568)
T PTZ00420 202 ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-------------------- 260 (568)
T ss_pred EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--------------------
Confidence 88877 67665433 23457888888887764 688888874 2222221111
Q ss_pred CeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEE--EEecCCCCCEEEEEEcCCC
Q psy3053 818 GMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIV--TELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 818 G~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l--~~l~~h~~~V~slafSpdg 890 (917)
.+.+.+... ..+|.++++|+.|+.|++|++..+... ..+. +..++.+++|.|+.
T Consensus 261 ------------------~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 261 ------------------NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ------------------CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 111221111 224667778888888888888766421 1222 45677788888854
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-23 Score=212.27 Aligned_cols=281 Identities=17% Similarity=0.263 Sum_probs=236.5
Q ss_pred eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeC
Q psy3053 616 RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNT 693 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl 693 (917)
+.+......|.++.|+++|..+++++.|.++++||..+|+.+.++..+.-.|..++|....+.++.++. |.+|+.-++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 444445678999999999999999999999999999999999999988889999999877777877776 889999999
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
.+. +.+....+|...|.+++.+|-++.+++++.|++|++||++..++...+. ...-..++|.|.|-.+|+
T Consensus 88 ~dN-------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 88 HDN-------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred ecC-------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEE
Confidence 876 5677788999999999999999999999999999999999877776665 233345789999999999
Q ss_pred EeCCCeEEEEECCCC--eEEEEee----cCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCc----eE
Q psy3053 774 CGNNCMLNVYDLTTG--MQVCNKV----FEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDA----VL 842 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg--~~i~~~~----~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~----V~ 842 (917)
+...+.|++||++.- .+...+. .......+.|+++|. ++.++..+.+++.|.-+|....++.++... +.
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 988889999999863 2222222 235678899998876 667888899999999999999888776543 23
Q ss_pred E-EeecCCEEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 843 S-LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 843 s-is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+ .+||++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|.-.+++|++ ..+.+|=.+
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 3 389999999999999999999999999999998 789999999999877777764 467778654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=240.35 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=185.2
Q ss_pred eeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCC-------ceeeeeeccccceEEEEEeCCC-CEEEEEecccE
Q psy3053 575 FCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCILPDN-CTMLVGCWDSC 645 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~~~~~~~~V~sl~~spd~-~~Lasgs~Dg~ 645 (917)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 2456778899999999999985 69999999999
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc-eEEEEEeCC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR-IKCLAISKD 724 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spd 724 (917)
|+|||+.+++....+.+|.+.|.+++|+|++..|++|+.|++|++||++++ ........|.+. +..+.|.++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-------~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-------TIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-------cEEEEEecCCCCcceEEEEcCC
Confidence 999999999999999999999999999999999999999999999999876 233334456543 456788888
Q ss_pred CCEEEEEE----CCCeEEEEECCCCee-eEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec--
Q psy3053 725 NNQLAVGT----EAGELIIWSLENHLM-TQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF-- 796 (917)
Q Consensus 725 g~~Lasgs----~dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~-- 796 (917)
+..+++++ .|+.|++||+++... ...........+....|+++++.+++++ .|+.|++||+.+++.+.....
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s 302 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS 302 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC
Confidence 87777654 478999999987543 3333323344566678999999999887 599999999999887665433
Q ss_pred CCceEEEEEeCC
Q psy3053 797 EEKLLCLSWAGE 808 (917)
Q Consensus 797 ~~~i~~l~~s~~ 808 (917)
..+...+++.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 345667777765
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=214.78 Aligned_cols=279 Identities=18% Similarity=0.276 Sum_probs=213.2
Q ss_pred cCCcceEEEEEeC-CCcEEEEEecCCceEEEeccC-Ccee-eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 578 SHKEAITAVAICG-EGISVASVGRDAMLKIHSLKT-GRQE-RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 578 ~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t-~~~~-~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
.-.+.|.+++||| ...+++++|.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 556777999999999999986 3332 445568899999999999999999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCC--EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRK--RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~--~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.+..+..|.++|.++.|-+... .|+|||+|.+|+.||++.. .........+.+.+++.- ..++++++
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--------~pv~t~~LPeRvYa~Dv~--~pm~vVat 173 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--------NPVATLQLPERVYAADVL--YPMAVVAT 173 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC--------Ceeeeeeccceeeehhcc--CceeEEEe
Confidence 4566778999999999987655 8999999999999999865 333444556677766654 56888999
Q ss_pred CCCeEEEEECCCCeee-EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 733 EAGELIIWSLENHLMT-QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
.+..|.+|+++++... +.......-.++|++..+|....+.|+-+|.+.+..+..+.+...+.+ ..+.+.
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF-------kCHR~~-- 244 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF-------KCHRST-- 244 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE-------EEeccC--
Confidence 9999999999776433 333334566889999999888889999999998888776533211110 000000
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
++.++ .| .+|.++ .|.-..|+++|.||+..+||-+....+.+.+.|..+|++.+|+.+
T Consensus 245 --~~~~~--~V----------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 245 --NSVND--DV----------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred --CCCCC--ce----------------EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence 00000 01 123333 556678999999999999999888888888899999999999999
Q ss_pred CCEEEEE
Q psy3053 890 RKRLISG 896 (917)
Q Consensus 890 g~~LaSg 896 (917)
|.++|-+
T Consensus 305 G~ifaYA 311 (347)
T KOG0647|consen 305 GSIFAYA 311 (347)
T ss_pred CCEEEEE
Confidence 9988754
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=217.09 Aligned_cols=308 Identities=14% Similarity=0.207 Sum_probs=250.4
Q ss_pred EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEec
Q psy3053 594 SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 673 (917)
Q Consensus 594 ~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~s 673 (917)
.|++.-.+++++ .+.++.+.+|...|+.++.......+.+++.|.+.+||.+++|+++.++.||.+.|++++|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 355555666643 24456788999999999888777899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeC------CCCC----------------------CCc-----cCCcceeeeccCCCceEEEE
Q psy3053 674 EKRKRLISGSWDCTVRVWNT------GASW----------------------SHM-----KPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 674 pd~~~L~Sgs~DgtI~vWdl------~~~~----------------------~~~-----~~~~~~~~~~~h~~~V~~l~ 720 (917)
+.+.+++++|.|++-.||.. .... ... ....++..+.+|.+.|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 99999999999999999972 1100 000 00123344678999999999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE-EEE-eecCC
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ-VCN-KVFEE 798 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~-i~~-~~~~~ 798 (917)
|-..|+.+++++.|.+..+||+++++.+..+. +|....+.++-+|..+++++++.|.+.++||.+..-. +.. ..|..
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd 358 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD 358 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence 99999999999999999999999999999998 9999999999999999999999999999999984322 222 34667
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEECCCCE-EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe-
Q psy3053 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQ-LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL- 874 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~-~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l- 874 (917)
.+++..|.-+..+++|+.|.+|++||+++.+ ++.++.. ..++..+ +..+..|+.-.++..|++||+...+ +..+
T Consensus 359 tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlP 436 (481)
T KOG0300|consen 359 TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLP 436 (481)
T ss_pred ceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCC
Confidence 8999999988899999999999999999875 5566653 3444444 5566688888888899999997443 3333
Q ss_pred ----cCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCcc
Q psy3053 875 ----AGHEDAISCVAWDEKR--KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 875 ----~~h~~~V~slafSpdg--~~LaSgs~DG~V~IWdl~~~ 910 (917)
++|...|+|++|..+. .-|+++|-|..+.-|+++..
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 5799999999998654 46899999999999999753
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=232.73 Aligned_cols=279 Identities=20% Similarity=0.319 Sum_probs=231.9
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee--eeeccccceEE-EEEeC-CCCEEEEEecccE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER--SAVLSSMTLSS-LCILP-DNCTMLVGCWDSC 645 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~--~~~~~~~~V~s-l~~sp-d~~~Lasgs~Dg~ 645 (917)
.+..+.+.+|+..|..+++.+.. .++++|+||++++|+-..++.+. .+.++.+-|.+ +++.+ ++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 35668899999999999877665 78999999999999976655443 34556665655 67765 4557999999999
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+.+|...+..+...+.+|...|.|++...++. ++|||+|.++++|..... .....+|...|++++.-|++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l---------~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL---------VYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh---------hcccCCcchheeeeeecCCC
Confidence 99999999999999999999999999887776 999999999999987543 23367999999999999988
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEE-
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS- 804 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~- 804 (917)
.+++|+.|.+|++|.- ++.++++. +|.+.|+++++-+++ .+++|+.||.|+.|++..........|..-+.+++
T Consensus 153 -~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 153 -TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred -cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEe
Confidence 8999999999999975 77888888 899999999999875 68899999999999995444445566778899999
Q ss_pred EeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCCCeEEEEECc
Q psy3053 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 805 ~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
..+++.+++++.|+++++|+.. .+.+.+......|+++ .....-|++|+.||.|+||..+
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 4567789999999999999986 6666776556678888 4455668999999999999765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=233.99 Aligned_cols=234 Identities=14% Similarity=0.145 Sum_probs=179.1
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCcc-CCcceeeeccCCCceE
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMK-PSKSLVSQLDLDNRIK 717 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~-~~~~~~~~~~h~~~V~ 717 (917)
|+.++.+++|+......+..+.+|.+.|.+++|+|+ +++|+|||.||+|++||+.++..... .........+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888899999999999999996 78999999999999999976421111 1112334567899999
Q ss_pred EEEEeCCCCE-EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 718 CLAISKDNNQ-LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 718 ~l~~spdg~~-Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
+++|+|++.. +++|+.||+|++||+++++....+. +...|.+++|+|+|..|++++.|+.|++||+++++.+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t--- 204 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS--- 204 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE---
Confidence 9999999875 5789999999999999998777665 557899999999999999999999999999887765432
Q ss_pred CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceE-------EEeecCCEEEEEeCCC----eEEEEEC
Q psy3053 797 EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL-------SLHFDNCTMLVGCWDS----CVVIYDV 865 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~-------sis~dg~~Lasgs~DG----~I~Iwdl 865 (917)
+.+|.+.+. ++++++.++++++.|+ .|++||+
T Consensus 205 -------------------------------------l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 205 -------------------------------------FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred -------------------------------------EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 223332211 1236778888887764 7999999
Q ss_pred cC-CeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEEE
Q psy3053 866 EC-GRIVTELA--GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 866 ~t-g~~l~~l~--~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~L 915 (917)
++ ++++.... .+.+.+......++|.++++|+.|+.|++|++....++.+
T Consensus 248 r~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 248 KNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 85 55665543 3334444444456789999999999999999976554443
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=239.71 Aligned_cols=252 Identities=19% Similarity=0.270 Sum_probs=209.5
Q ss_pred eeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC----------------------------C--------
Q psy3053 656 IVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW----------------------------S-------- 698 (917)
Q Consensus 656 ~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~----------------------------~-------- 698 (917)
..+.+. +|.++|+++.|++||++||+||.||.|+||.+.... .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 899999999999999999999999999999875500 0
Q ss_pred Ccc-----------------CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEE
Q psy3053 699 HMK-----------------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNG 761 (917)
Q Consensus 699 ~~~-----------------~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~ 761 (917)
... ...++....+|.+.|..++|+.+ ++|++++.|.+|++|++....++..+. |..-|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCeeEE
Confidence 000 00122234689999999999965 589999999999999999999999996 9999999
Q ss_pred EEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEec--C
Q psy3053 762 VLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRA--H 837 (917)
Q Consensus 762 v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~--h 837 (917)
|+|+| |.+++++|+-||.++||++...+.+.......-|+++++.|+|. .++|+.+|.+++|+....+......- |
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999 88999999999999999999998888888889999999999876 67899999999999998887655431 1
Q ss_pred ------CCceEEEee---cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 838 ------KDAVLSLHF---DNCTMLVGCWDSCVVIYDVECGRIVTELAGHED--AISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 838 ------~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~--~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
...|+.+.+ +...+++.+.|..|+|+|.++..++..++|+.. .-....|+.||++|++|+.|..|++|+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 227998844 444688889999999999999999999987643 234568999999999999999999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
.+..
T Consensus 575 ~~~~ 578 (712)
T KOG0283|consen 575 NDSF 578 (712)
T ss_pred CCCC
Confidence 8644
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=233.51 Aligned_cols=257 Identities=19% Similarity=0.284 Sum_probs=219.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasg 640 (917)
.+|+..++- .......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.++.+.+ |...|.+++|. +..+.+|
T Consensus 200 ylW~~~s~~-v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG 276 (484)
T KOG0305|consen 200 YLWSASSGS-VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG 276 (484)
T ss_pred EEEecCCCc-eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe
Confidence 578877653 2223334489999999999999999999999999999999999999998 99999999998 6789999
Q ss_pred ecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 641 CWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
+.|+.|..+|+...+.... +.+|...|..++|++|+.++|+|+.|+.+.|||.... ........|.+.|.++
T Consensus 277 sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-------~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-------EPKFTFTEHTAAVKAL 349 (484)
T ss_pred cCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-------cccEEEeccceeeeEe
Confidence 9999999999998766554 8899999999999999999999999999999998443 4566778999999999
Q ss_pred EEeC-CCCEEEEE--ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 720 AISK-DNNQLAVG--TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 720 ~~sp-dg~~Lasg--s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
+|+| ...+||+| +.|+.|++||..++..+..+. ..+.|.++.|++..+.++++....
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s------------------ 409 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYS------------------ 409 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCC------------------
Confidence 9999 45788886 578999999999999988885 678999999999988887764321
Q ss_pred CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 797 EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
++.|.+|+..+.+.+..+.+|...|..+ +|||..+++|+.|.++++|++-..
T Consensus 410 --------------------~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 --------------------ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --------------------CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 1246666666777888889999999888 889999999999999999998654
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=214.29 Aligned_cols=290 Identities=16% Similarity=0.256 Sum_probs=245.7
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
.+.+..+.||++.|+.++.......+.+++.|.+-+||.+++|.++..+.+|.+.|.++.|++.+.++++++.|++-.||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 35567789999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred Ee------cc--------C--------------------------eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEE
Q psy3053 650 DV------EC--------G--------------------------RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVR 689 (917)
Q Consensus 650 dl------~t--------g--------------------------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~ 689 (917)
.. .. + .++..+.+|.+.|.+..|-..|+.++++|+|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 72 11 0 12446779999999999999999999999999999
Q ss_pred EEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe-eeEEecCCCCCCeEEEEEecCC
Q psy3053 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL-MTQQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 690 vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fspdg 768 (917)
+||++++ ..+..+.+|+...+.++-+|..+++++++.|.+.++||.+..- .+..+. +|...|+++.|..+.
T Consensus 298 lwDVEtg-------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 298 LWDVETG-------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDD 369 (481)
T ss_pred eeeeccC-------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCC
Confidence 9999987 3455678999999999999999999999999999999998543 344444 999999999998765
Q ss_pred CEEEEEeCCCeEEEEECCCC-eEEEEeecCCceEEEEEeCCCEEEEE-eCCCeEEEEECCCCEEEE----EEecCCCceE
Q psy3053 769 CRVLSCGNNCMLNVYDLTTG-MQVCNKVFEEKLLCLSWAGEEKVILG-GALGMVYLVDLIQVQLLK----QVRAHKDAVL 842 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~~~i~~l~~s~~~~lv~g-s~dG~I~vwdl~~~~~i~----~l~~h~~~V~ 842 (917)
.+++|+.|.+|++||+++. .++..+...++++.++.+..+.+++. ..+..|++||+...+..+ .-.+|..-|+
T Consensus 370 -~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~ 448 (481)
T KOG0300|consen 370 -RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVT 448 (481)
T ss_pred -ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeee
Confidence 6889999999999999864 56778888999999999877655554 555789999997655432 3358999999
Q ss_pred EEeecC----CEEEEEeCCCeEEEEECcCC
Q psy3053 843 SLHFDN----CTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 843 sis~dg----~~Lasgs~DG~I~Iwdl~tg 868 (917)
|.+|.. .-|++++.|..+.-|++...
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeccccCcccccccccccceeeeeEeccc
Confidence 997733 34788899999999987643
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=242.04 Aligned_cols=284 Identities=15% Similarity=0.213 Sum_probs=234.9
Q ss_pred cCCcceEEEEEeCCCcEEEEEe--cCCceEEEeccC------------CceeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 578 SHKEAITAVAICGEGISVASVG--RDAMLKIHSLKT------------GRQERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs--~Dg~I~IWd~~t------------~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
.+...|.+|+.+|||..++||+ .||.++||+.+. .+.+.+...|.+.|.|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 899999999742 23455667799999999999999999999999
Q ss_pred cEEEEEEecc-------C-----------eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcc
Q psy3053 644 SCVVIYDVEC-------G-----------RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 644 g~I~Iwdl~t-------g-----------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~ 705 (917)
+.|.||.... | +....+.+|...|..++|+|++.+|+++|.|++|.+|+..+. ..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-------~~ 163 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-------EL 163 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-------ee
Confidence 9999999872 1 356788999999999999999999999999999999998764 45
Q ss_pred eeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC-----CCCCeEEEEEecCCCEEEEEeC----
Q psy3053 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD-----INASVNGVLFSEDGCRVLSCGN---- 776 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~-----h~~~V~~v~fspdg~~L~s~s~---- 776 (917)
.....+|.+.|..+.|+|-|+++|+-+.|++|++|++.+....+.+..+ .......+.|||||.+|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 6667899999999999999999999999999999998877666666532 2345778999999999998743
Q ss_pred CCeEEEEECCCCeE-EEEeecCCceEEEEEeCC------C------------EEEEEeCCCeEEEEECCCCEEEEEEe-c
Q psy3053 777 NCMLNVYDLTTGMQ-VCNKVFEEKLLCLSWAGE------E------------KVILGGALGMVYLVDLIQVQLLKQVR-A 836 (917)
Q Consensus 777 Dg~I~iwDl~tg~~-i~~~~~~~~i~~l~~s~~------~------------~lv~gs~dG~I~vwdl~~~~~i~~l~-~ 836 (917)
-.++.|.+-.+-+. ..-..|..++.++.|+|. . .+++|+.|+.|.||.....+++..+. -
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l 323 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL 323 (942)
T ss_pred cceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh
Confidence 34678877665553 344678889999999851 2 46789999999999998887765543 2
Q ss_pred CCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 837 HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 837 h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
....|..+ ++||..|+++|.||+|.+..++..
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 45678777 558999999999999999988643
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=208.32 Aligned_cols=250 Identities=18% Similarity=0.272 Sum_probs=216.9
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCe
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGE 736 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~ 736 (917)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|++.... ........+|.+.|..++|+|. ...+++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 4567899999999999999999999999999999997651 1112234678889999999985 578999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC-CCEEEEEe
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG-EEKVILGG 815 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~-~~~lv~gs 815 (917)
|++||.+++++...+. ..+.-.-+.|+|+|.++++++.|..|...|.++.+.....+....+..++|+. ++.++...
T Consensus 89 ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred EEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec
Confidence 9999999999999887 33444568899999999999999999999999999888888888888888874 44566677
Q ss_pred CCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEE
Q psy3053 816 ALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 816 ~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~L 893 (917)
..|.|.+......+++..+.+|.....|| +|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++|
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 77999999999999999999999999998 7799999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEecCcc-eEEE
Q psy3053 894 ISGNLVGAPKLYATEFY-LLYV 914 (917)
Q Consensus 894 aSgs~DG~V~IWdl~~~-ll~~ 914 (917)
|+|+.|-.|-|=++++. .++.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred eccCccceEEeEecccCCeEEE
Confidence 99999999877666633 4443
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=207.94 Aligned_cols=263 Identities=18% Similarity=0.269 Sum_probs=216.3
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
....|+++.|+|.+..|++++|||++++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~---- 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG---- 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC----
Confidence 35679999999999999999999999999999876655554 899999999986 578999999999999999887
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
.......|..+|.|+..++....+++|+.|++|++||.+.......+. ....|.++.. .|..|++|+.|..+
T Consensus 86 ----~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 86 ----NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKV 157 (323)
T ss_pred ----cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceE
Confidence 344456799999999999999999999999999999999855555554 3446777655 56789999999999
Q ss_pred EEEECCCCeEEE---EeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCC----EEEEEEecCCC---------ceEE
Q psy3053 781 NVYDLTTGMQVC---NKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQV----QLLKQVRAHKD---------AVLS 843 (917)
Q Consensus 781 ~iwDl~tg~~i~---~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~----~~i~~l~~h~~---------~V~s 843 (917)
.+||+++..... .-.+.-.++|++.-|++ -+++++-+|.|.+=.+... +....++.|.. +|.+
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 999998865543 33455678999988743 4888999999988766655 33445555532 4666
Q ss_pred E--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 844 L--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 844 i--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
+ +|--+.++||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.|+
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 6 44566799999999999999999999999988888899999999999999987
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=212.46 Aligned_cols=282 Identities=15% Similarity=0.134 Sum_probs=215.0
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeEEeccCCCceeEEE
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~ 671 (917)
..+++++.|+.+.+||..+++....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 568899999999999999998888777654 36789999999876 5677899999999999988877765544 56789
Q ss_pred ecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-eEEEEECCCCeeeE
Q psy3053 672 WDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-ELIIWSLENHLMTQ 749 (917)
Q Consensus 672 ~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-~I~iwDl~~~~~~~ 749 (917)
|+|+++.++++ +.|+.+++||+.+. .......+...+.+++++|+|+.+++++.++ .+.+||..+++...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~--------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR--------KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC--------eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 99999877654 56899999999764 1222223344578899999999999988775 46778998887766
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCC--------ceEEEEEeCCCEE--EEEeCCC
Q psy3053 750 QLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEE--------KLLCLSWAGEEKV--ILGGALG 818 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~--------~i~~l~~s~~~~l--v~gs~dG 818 (917)
... ....+.+++|+|+|+.+++++ .++.+++||+.+++.+....... ....+++++++.. ++.+.++
T Consensus 152 ~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 152 NVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 554 234567899999999886554 68999999999987766544221 2345778877653 3445677
Q ss_pred eEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEE-eCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 819 MVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 819 ~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasg-s~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
.+.+||..+++.+..+. +...+.++ +|+|+.|+++ +.+|.|.+||+.+++.+..+... ...++++++|
T Consensus 230 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred eEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 89999999988776553 23355555 6799998886 46899999999999999998765 4558888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=214.04 Aligned_cols=313 Identities=18% Similarity=0.264 Sum_probs=247.2
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee---
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI--- 656 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~--- 656 (917)
+.-|.|++|.++|. ++||.++|.|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-.+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccc
Confidence 46799999999996 78999999999999988888887789999999999999997665 99999999998321100
Q ss_pred -------------------------------------eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 657 -------------------------------------VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 657 -------------------------------------i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
.....+|.+....++.+|+.+.++|++.|+++++|+ ..
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~---- 398 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH---- 398 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC----
Confidence 012347889999999999999999999999999999 21
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
.+.-......++.|++|+|.| .+|.|+..|...+.|.++...+.... . ..++++++|+|+|.+||.|+.|+.
T Consensus 399 -----k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 399 -----KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred -----ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCCEEEEecCCCe
Confidence 223333456789999999999 99999999999999999966666555 4 889999999999999999999999
Q ss_pred EEEEECCCCeE-EEE--eecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEe------------------cC
Q psy3053 780 LNVYDLTTGMQ-VCN--KVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVR------------------AH 837 (917)
Q Consensus 780 I~iwDl~tg~~-i~~--~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~------------------~h 837 (917)
|++|.+..+.. ... .-..++|+.+.|+.++. +.+-+.|-.|..|.....+.+...+ .+
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 99999865432 222 22347899999998765 5566777889999543322211110 12
Q ss_pred CCceEEE--eecCCEEEEEeCCCeEEEEECcCC---eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 838 KDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 838 ~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg---~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
...+..+ +.+.+.+|+|.+.|.|++|...-- ..-.++.+|++.|++++|..+...|++.+.|.+|..|++
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 2222222 557889999999999999986433 345678899999999999998889998889999999987
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=209.38 Aligned_cols=201 Identities=20% Similarity=0.269 Sum_probs=173.0
Q ss_pred CcceEEEEEeCCC-cEEEEEecCCceEEEeccC-CceeeeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEeccCee
Q psy3053 580 KEAITAVAICGEG-ISVASVGRDAMLKIHSLKT-GRQERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 580 ~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t-~~~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.+.+..++|+++. +.+++++.||++++||+.. ..+++.++.|...|.++.|++ ++..++++++|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 5678899999975 6788999999999999643 456888899999999999998 456788889999999999999999
Q ss_pred eEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEEEECC
Q psy3053 657 VTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEA 734 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~d 734 (917)
++++.||...|...+|+| ..+.++++|.||++++||++.. ........|..++.|+.|+. +.+.+++|+.|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-------GKFMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-------CceeEEEeccceeEeecccccCCcEEEecCCC
Confidence 999999999999999999 5789999999999999998765 22333667888999999998 56789999999
Q ss_pred CeEEEEECCCCe-eeEEecCCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCC
Q psy3053 735 GELIIWSLENHL-MTQQLSDDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 735 G~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg 788 (917)
+.|+.||+++-+ ++..+. +|.-.|+.++|||. ...|++++.|-++++||...+
T Consensus 213 ~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 999999999764 455554 89999999999995 557889999999999998644
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=218.51 Aligned_cols=349 Identities=18% Similarity=0.228 Sum_probs=257.8
Q ss_pred ccccCCccccceeeeccC-CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSH-KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H-~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg 640 (917)
.+|+.....-....+.++ ...|.+++|+ +|..|++.+-+|.|.-||+.++++........++|++++.+|.+..+++|
T Consensus 50 EiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 50 EIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred EEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee
Confidence 478776655455556655 4689999999 55578999999999999999999999999999999999999999999999
Q ss_pred ecccEEEEEEeccCeeeE--EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc-CCCceE
Q psy3053 641 CWDSCVVIYDVECGRIVT--ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD-LDNRIK 717 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~--~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~~~V~ 717 (917)
+.||.+...+...++... .+...++.|.+++|+|++..|++|+.||.|++||...+............... ...-|+
T Consensus 129 cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 999988888888776543 45556789999999999999999999999999999877422211111111111 334467
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE-----E
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV-----C 792 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i-----~ 792 (917)
++.+-.+ ..|++|...|+|.+||...+.+++... .|.+.|.+++.++++..++++|.|+.+..+...++... .
T Consensus 209 Sv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~ 286 (691)
T KOG2048|consen 209 SVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR 286 (691)
T ss_pred EEEEeec-CcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeecc
Confidence 7777744 579999999999999999999999888 89999999999999999999999999999988766331 2
Q ss_pred EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC-----------------------EEEEEEecC------------
Q psy3053 793 NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV-----------------------QLLKQVRAH------------ 837 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~-----------------------~~i~~l~~h------------ 837 (917)
...+...+.+++..++ .+++|+.|+.+.+-..... +.......|
T Consensus 287 r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~ 365 (691)
T KOG2048|consen 287 RDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVIL 365 (691)
T ss_pred ccCCcccceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccc
Confidence 2335567888888877 7777877777766544320 000001011
Q ss_pred ----------------CCce--EEEeecCCEEEEEeCCCeEEEEECcC--------------------------------
Q psy3053 838 ----------------KDAV--LSLHFDNCTMLVGCWDSCVVIYDVEC-------------------------------- 867 (917)
Q Consensus 838 ----------------~~~V--~sis~dg~~Lasgs~DG~I~Iwdl~t-------------------------------- 867 (917)
...| .+++|+|+.|+.+.-. .+++|.+..
T Consensus 366 ~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~ 444 (691)
T KOG2048|consen 366 QGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLF 444 (691)
T ss_pred ccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEE
Confidence 1112 3448899998887621 123332221
Q ss_pred ----------------Ce--EEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEEE
Q psy3053 868 ----------------GR--IVTEL--AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 868 ----------------g~--~l~~l--~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~L 915 (917)
.. .+..+ ++....|+.++.||+|+++|+.+.+|.|.+|++++...+.|
T Consensus 445 ~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 445 LVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLL 512 (691)
T ss_pred EEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecc
Confidence 00 00000 12345799999999999999999999999999998876654
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=212.27 Aligned_cols=248 Identities=18% Similarity=0.252 Sum_probs=202.4
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe--------ccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL--------AGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l--------~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
....+.|..|+|||.+|++|+.||-|-+|+..+|+..+.+ .-+.++|.|++|+.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3455778899999999999999999999999999875443 34889999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeee-ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 693 TGASWSHMKPSKSLVSQ-LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
+.++. ++... ..|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+. +|.+.|+...|++||..+
T Consensus 292 i~tG~-------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 292 IETGQ-------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHHI 363 (508)
T ss_pred Eecch-------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCCCeE
Confidence 99882 33322 3688999999999999999999999999999999999999999 999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--e-cC
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--F-DN 848 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~-dg 848 (917)
++++.||+|++|+.++++++.++...+ ...+|.++. | +.
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~--------------------------------------~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLG--------------------------------------TDYPVNSVILLPKNP 405 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCC--------------------------------------CcccceeEEEcCCCC
Confidence 999999999999999887765543221 122333331 1 44
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAG---HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~---h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
..++++...++|+|.++. |+.++.+.. ..+..-+.+.||.|.++...+.|+.++.+.+... +-+.+
T Consensus 406 eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 566777777778888775 677776643 2345667788999999999999999999998744 44444
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-24 Score=220.28 Aligned_cols=283 Identities=11% Similarity=0.173 Sum_probs=230.2
Q ss_pred ceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 572 PLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
.+..+.||.+.|.|++=+|.. ..+++|+.||.|++||+....+..++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456789999999999999987 7899999999999999999999999999999999999876 6788999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLA 729 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~La 729 (917)
++. ....++.+ .+.+..+.-+..++.++|+|.+ |.|||.... .++....-..+.|.++.|+|.. ..|+
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~-------~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD-------NPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCce--eeecccccC-------CccceeecCCCceeEEecCCCcchhee
Confidence 875 45555543 3567777777777889998865 899998654 2333333445679999999965 5677
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCceEEEEEeC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV--CNKVFEEKLLCLSWAG 807 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i--~~~~~~~~i~~l~~s~ 807 (917)
+++.|+.|.+||++++.+++.+. ....-+.++|+|.+-.+++|++|..++.+|++.-+.- ....|.+.+..+.++|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 77799999999999999988776 4566788999998888999999999999999865332 2245667899999998
Q ss_pred CCE-EEEEeCCCeEEEEECCCCEEEEEEec-CCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 808 EEK-VILGGALGMVYLVDLIQVQLLKQVRA-HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 808 ~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~-h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
.|. +++|+.|.+|++|....+..-..+.. --..|.|+ +.|.+++++||+|+.|++|.....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 765 89999999999999988765433321 23567888 6699999999999999999875443
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=230.54 Aligned_cols=274 Identities=19% Similarity=0.265 Sum_probs=229.3
Q ss_pred CCCCEEEEEecccEEEEEEeccCe------eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcc
Q psy3053 632 PDNCTMLVGCWDSCVVIYDVECGR------IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 632 pd~~~Lasgs~Dg~I~Iwdl~tg~------~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~ 705 (917)
|.+++|.+||.||.|++|++.... .+..++.|.+.|+.++...+++.|+++|.|.+|++|+...+. ..+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-----TFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-----chh
Confidence 467789999999999999986432 367788999999999999999999999999999999987651 234
Q ss_pred eeeeccCCCceEEEEE-eCCCCEEEEEECCCeEEEEECCCCee--eEE--------ecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 706 LVSQLDLDNRIKCLAI-SKDNNQLAVGTEAGELIIWSLENHLM--TQQ--------LSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~-spdg~~Lasgs~dG~I~iwDl~~~~~--~~~--------l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
......|.+.|.|++. -++...+|+|+-|+.|.+||++++.. +.. +..++..+|.+++.++.|..+++|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 5556789999999999 77889999999999999999998732 222 222677899999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEE-eecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE
Q psy3053 775 GNNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT 850 (917)
Q Consensus 775 s~Dg~I~iwDl~tg~~i~~-~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~ 850 (917)
+..+.+++||.++++.+.. ..|...|.++..+++| .++++++||+|++||+...+++.++..|...|+++ +++=..
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred CcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence 9999999999999877654 4577889999998776 69999999999999999999999999999999999 556678
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++|+.||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|..+..
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 999999999999999885433333335567888887765566678889999999988643
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=203.02 Aligned_cols=265 Identities=20% Similarity=0.322 Sum_probs=213.3
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
-.+.|++|.|+|.++.|++++.||++++|+........ .-.|..++.+|+|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 36789999999999999999999999999998774433 334788999999987 568899999999999999988754
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
.+..|..+|.|+..++....+++||+|++|++||.+.. ...........|.|+..+ |+.|++|+.+..+.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--------~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--------VVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVL 158 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc--------ccccccccCceEEEEecc--CCEEEEeecCceEE
Confidence 45569999999999998899999999999999998753 122223344578887765 78999999999999
Q ss_pred EEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE----EEee-c---------CCceEEE
Q psy3053 739 IWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV----CNKV-F---------EEKLLCL 803 (917)
Q Consensus 739 iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i----~~~~-~---------~~~i~~l 803 (917)
+||+++.....+.. ....-.++++++-|++.-.++++-||.|.+=.+...+.. ..+. | --+|+++
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 99999876544332 245568999999999888999999999988766554111 1111 1 1358899
Q ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeC
Q psy3053 804 SWAGE-EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCW 856 (917)
Q Consensus 804 ~~s~~-~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~ 856 (917)
+|+|- +.+++|+.||.|.+||+.+.+.+..+......|.++++ +|..||+|+.
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99984 67999999999999999999999999887777888855 8999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=206.63 Aligned_cols=270 Identities=14% Similarity=0.164 Sum_probs=205.8
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
+.+++++.|+.+++||+.+++.+..+.++. .+.+++|+|+++.+ ++++.++.|++||..++. ........
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE--------VIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------EEEeccCC
Confidence 578899999999999999999888887664 46789999999876 567788999999987652 11111222
Q ss_pred CceEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCeEE
Q psy3053 714 NRIKCLAISKDNNQLAVG-TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-MLNVYDLTTGMQV 791 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-~I~iwDl~tg~~i 791 (917)
..+..++++|+++.++++ +.++.+.+||+.+++.+..+. ....+.+++|+|+|..+++++.++ .+.+||..+++..
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 345678999999977655 568999999999988777665 234568899999999999988765 5677899888777
Q ss_pred EEeecCCceEEEEEeCCCE-EEEE-eCCCeEEEEECCCCEEEEEEecCC-----Cc--e--EEEeecCCEEEE-EeCCCe
Q psy3053 792 CNKVFEEKLLCLSWAGEEK-VILG-GALGMVYLVDLIQVQLLKQVRAHK-----DA--V--LSLHFDNCTMLV-GCWDSC 859 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~~-lv~g-s~dG~I~vwdl~~~~~i~~l~~h~-----~~--V--~sis~dg~~Las-gs~DG~ 859 (917)
..........++++++++. ++++ ..+|.|.+||+.+++.+..+..+. .. . .+++++++.+++ .+.++.
T Consensus 151 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 151 DNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence 6655566677889988765 4344 458999999999998877664321 11 1 234788988555 455678
Q ss_pred EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCcce-EEEEe
Q psy3053 860 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-NLVGAPKLYATEFYL-LYVLT 916 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg-s~DG~V~IWdl~~~l-l~~Lt 916 (917)
+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||++... +..+.
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999988876654 44578999999999999886 569999999998653 45543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=222.95 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=233.1
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeee--EEeccCCCceeE-EEecC-CCCEEEEEECCCeE
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV--TELAGHEDAISC-VAWDE-KRKRLISGSWDCTV 688 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i--~~l~~H~~~Vt~-l~~sp-d~~~L~Sgs~DgtI 688 (917)
+..+.+.+|...|..++..+ +..++++|.||++++|+-..++.+ ..+.+|.+.|.+ +++.+ ++-.+++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 34566788998898887654 458999999999999998665543 456778888877 88875 45569999999999
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg 768 (917)
.+|...+. .+...+.+|...|.|++...++. +++|+.|.++++|-.. ++...+. +|...|++++.-|++
T Consensus 84 ~v~~~~~~-------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~-gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 84 IVFKLSQA-------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQ-GHTASVWAVASLPEN 152 (745)
T ss_pred EEEecCCC-------CchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccC-CcchheeeeeecCCC
Confidence 99998765 45667889999999999888887 9999999999999764 4555566 999999999999988
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--
Q psy3053 769 CRVLSCGNNCMLNVYDLTTGMQVCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH-- 845 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis-- 845 (917)
.+++|+.|.+|++|.- ++.+..+ .|...|+.+++-+++.+++++.||.|+.|++ +|..+.++.+|..-|.+++
T Consensus 153 -~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 153 -TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred -cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec
Confidence 8899999999999975 5555443 3677899999999999999999999999999 8899999999999999995
Q ss_pred ecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 846 FDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 846 ~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+++.++++++|++++||+.. .+.+.+.-....|+++.+-++| -+++|+.||.||||..+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEec
Confidence 588999999999999999976 7777776555589999888776 57788999999999886
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=185.39 Aligned_cols=285 Identities=17% Similarity=0.183 Sum_probs=228.8
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEec------cCe---------eeEEeccCCCceeEEEecCCCCEEEEEECC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE------CGR---------IVTELAGHEDAISCVAWDEKRKRLISGSWD 685 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~------tg~---------~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D 685 (917)
....|.+++|+|.|.+.++|+...+++|.... .+. ..+.-+.|.+.|.|.+|+|+|..|++||.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 45678999999999999999999999887432 111 112234689999999999999999999999
Q ss_pred CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC----CCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeE
Q psy3053 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD----NNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVN 760 (917)
Q Consensus 686 gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~ 760 (917)
.+|++.-.+....... ..-....-|++.|..++|-.+ +.++++++ .|..|++-|..+|+..+.+. +|.+.|.
T Consensus 111 k~ik~l~fn~dt~~~~--g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghil 187 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNAT--GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHIL 187 (350)
T ss_pred ceEEEEeccccccccc--CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEE
Confidence 9999987765422211 222335568999999999653 45666654 45678888888999999888 8888887
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec--------CCceEEEEEeCCCEE-EEEeCCCeEEEEECCCCEEE
Q psy3053 761 GVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--------EEKLLCLSWAGEEKV-ILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 761 ~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--------~~~i~~l~~s~~~~l-v~gs~dG~I~vwdl~~~~~i 831 (917)
++ ++=+|-.+++|+.|.+|+.||++-..++..... .+.+.+++.+|.|.+ ++|-.|....+||++.++.+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 76 445788999999999999999998877766542 245888999998875 46777899999999999999
Q ss_pred EEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC----eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3053 832 KQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG----RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905 (917)
Q Consensus 832 ~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg----~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IW 905 (917)
+.+..|...|.|+ +|...++++++.|.+|++-|++.. -++..+..|.+.+-.+.|+|..-.+++.+.|.++.+|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 9999999999999 778889999999999999998622 1334456799999999999999999999999999999
Q ss_pred ecCc
Q psy3053 906 ATEF 909 (917)
Q Consensus 906 dl~~ 909 (917)
.+++
T Consensus 347 a~~~ 350 (350)
T KOG0641|consen 347 ALNG 350 (350)
T ss_pred ccCC
Confidence 8753
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=214.41 Aligned_cols=279 Identities=17% Similarity=0.266 Sum_probs=226.3
Q ss_pred CceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEE
Q psy3053 602 AMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 679 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L 679 (917)
.++.+||+.+|....++++.. ..-.++... .+.+++++. ....+.+|.+..........--.++|.|++-+|+|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 458999999999888777652 222222221 235566554 45579999987554444333456889999999999999
Q ss_pred EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC---------CCeeeEE
Q psy3053 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE---------NHLMTQQ 750 (917)
Q Consensus 680 ~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~---------~~~~~~~ 750 (917)
+.|+..|.+.+|.+.++ ..+.....|-..|+|+.|+.||.++++|+.||.|.+|++. +-++...
T Consensus 97 ~ag~i~g~lYlWelssG-------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSG-------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred EeecccCcEEEEEeccc-------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 99999999999999988 2333456788999999999999999999999999999864 2345555
Q ss_pred ecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCC
Q psy3053 751 LSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 751 l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~ 827 (917)
+. .|.-+|+++...+. ..++++++.|.++++||+..|..+..+.++..+.+++.+|.+ .+.+|+.+|.|.+.++..
T Consensus 170 f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 170 FS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred ec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 65 89999999988775 458999999999999999999999999999999999999865 477899999999988753
Q ss_pred C----------------EEEEEEecCCC--ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc
Q psy3053 828 V----------------QLLKQVRAHKD--AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 828 ~----------------~~i~~l~~h~~--~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS 887 (917)
. ..+..+.||.+ .|+|+ +.||..|++|+.||.|+|||+.+.++++++....++|+.+.+.
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence 2 34566778988 99998 7799999999999999999999999999988778899999986
Q ss_pred CC
Q psy3053 888 EK 889 (917)
Q Consensus 888 pd 889 (917)
|-
T Consensus 329 ~~ 330 (476)
T KOG0646|consen 329 PL 330 (476)
T ss_pred cc
Confidence 63
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=201.29 Aligned_cols=240 Identities=17% Similarity=0.217 Sum_probs=196.7
Q ss_pred cCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 662 GHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 662 ~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
...+.|.+++||| ....++.||+||+|++|++..... ........|.++|.+++|+.+|..+++|+.|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 4568899999999 556777999999999999976411 1224456789999999999999999999999999999
Q ss_pred ECCCCeeeEEecCCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCC
Q psy3053 741 SLENHLMTQQLSDDINASVNGVLFSEDGC--RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALG 818 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~~~V~~v~fspdg~--~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG 818 (917)
|+.+++.. ++. .|.++|..+.|-+... .|++|+.|.+|+.||.+...++..+.+++++.++..-.. .++++..+.
T Consensus 100 DL~S~Q~~-~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p-m~vVata~r 176 (347)
T KOG0647|consen 100 DLASGQVS-QVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP-MAVVATAER 176 (347)
T ss_pred EccCCCee-eee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc-eeEEEecCC
Confidence 99999554 444 6999999999998665 899999999999999999999999999999999988766 889999999
Q ss_pred eEEEEECCCCEEEE-EEe-cCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC--eEEEEecCCCC---------CEEE
Q psy3053 819 MVYLVDLIQVQLLK-QVR-AHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG--RIVTELAGHED---------AISC 883 (917)
Q Consensus 819 ~I~vwdl~~~~~i~-~l~-~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg--~~l~~l~~h~~---------~V~s 883 (917)
.|.+|+++++.... ... .-.-.+.|+ ..|....+.|+-+|.+-|..+..+ +.-.+++.|.. +|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 99999998764322 111 122334555 457777799999999999998876 44445666642 4788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++|+|.-..|+|+|.||+..+||-+.
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eEeecccceEEEecCCceEEEecchh
Confidence 99999999999999999999999874
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=216.72 Aligned_cols=334 Identities=18% Similarity=0.244 Sum_probs=257.6
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee-------eeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-------RSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-------~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
..+.||.+.|.++.|+|.+..|+++|.|.++.+|.-.+..-+ ..+.+.......+.|+|+++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345799999999999999999999999999999987654221 2223345568889999999999999999999
Q ss_pred EEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC--------------------------
Q psy3053 647 VIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW-------------------------- 697 (917)
Q Consensus 647 ~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~-------------------------- 697 (917)
++|..... .....+.||.+.|++++|+|.|.+|+|+|.|.+-+++---...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99983332 2344567999999999999999999999999888876321000
Q ss_pred ----------------------------C-----------------------CccC------------------------
Q psy3053 698 ----------------------------S-----------------------HMKP------------------------ 702 (917)
Q Consensus 698 ----------------------------~-----------------------~~~~------------------------ 702 (917)
. ...+
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0 0000
Q ss_pred --------------CcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEE
Q psy3053 703 --------------SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVL 763 (917)
Q Consensus 703 --------------~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~ 763 (917)
..+.....+|...|.|++.+|+|+++|+++.. ..|++|+..+......+. .|.-.|+.++
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~ 579 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLA 579 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEE
Confidence 01222346888999999999999999999865 459999999988888887 8999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeEE-----EEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCC--EEEEE--
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTTGMQV-----CNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQV--QLLKQ-- 833 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~tg~~i-----~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~--~~i~~-- 833 (917)
|||||++|++++.|+++.+|....+... ....|..-|..++|+|++. +++++.|.+|.+|..... +.+..
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 9999999999999999999987543221 1234555588899998876 999999999999999887 44433
Q ss_pred EecCCCceEEEee-------cCCEEEEEeCCCeEEEEECcC-------CeE-----EEEecCCCCCEEEEEEcCC-----
Q psy3053 834 VRAHKDAVLSLHF-------DNCTMLVGCWDSCVVIYDVEC-------GRI-----VTELAGHEDAISCVAWDEK----- 889 (917)
Q Consensus 834 l~~h~~~V~sis~-------dg~~Lasgs~DG~I~Iwdl~t-------g~~-----l~~l~~h~~~V~slafSpd----- 889 (917)
...+..+|++++. .+..+++|-..|.|.+|.... +.. +....+|.+.|+.+.|+|.
T Consensus 660 ~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~ 739 (764)
T KOG1063|consen 660 CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDW 739 (764)
T ss_pred hhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccc
Confidence 2357888988854 233788899999999998651 111 1122357788999999975
Q ss_pred -----CCEEEEEeCCCcEEEEecC
Q psy3053 890 -----RKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 890 -----g~~LaSgs~DG~V~IWdl~ 908 (917)
...|++|+.|..+++++++
T Consensus 740 ~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 740 VEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccceeEEeeecccceeEEeecc
Confidence 2357999999999999875
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-21 Score=187.31 Aligned_cols=248 Identities=19% Similarity=0.230 Sum_probs=196.8
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce-----eeeeeccccceEEEEEeCC----CCEEEEEec-ccE
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ-----ERSAVLSSMTLSSLCILPD----NCTMLVGCW-DSC 645 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-----~~~~~~~~~~V~sl~~spd----~~~Lasgs~-Dg~ 645 (917)
-+.|++.|.|.+|||+|.+|++|+.|.+|++.......+ .-.+..|.+.|..++|..+ +.+|++++. |..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 367999999999999999999999999999876653322 2346678899999999754 457777654 778
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
|++-|..+|+..+.+.||++-|.++- +-++-.+++||.|.+|++||++-...............-..+.|.++++.|.|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 88889999999999999999998874 22568999999999999999876521111000000011123679999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-----eEEEEeecCCce
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-----MQVCNKVFEEKL 800 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-----~~i~~~~~~~~i 800 (917)
+++++|-.|....+||++.++.++.+. +|...|.++.|+|...++++|+.|..|++-|+... ..+..-.+...+
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 999999999999999999999999998 89999999999999999999999999999998643 112234567777
Q ss_pred EEEEEeCCCE-EEEEeCCCeEEEEEC
Q psy3053 801 LCLSWAGEEK-VILGGALGMVYLVDL 825 (917)
Q Consensus 801 ~~l~~s~~~~-lv~gs~dG~I~vwdl 825 (917)
..+.|.+... +++.+.|.++.+|-+
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEEecCccceeeeccCcceEEEecc
Confidence 8888887654 677788888888865
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=214.90 Aligned_cols=280 Identities=17% Similarity=0.255 Sum_probs=235.2
Q ss_pred ccccceEEEEEeCCCCEEEEEecccEEEEEEeccC---eeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCC
Q psy3053 620 LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG---RIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 620 ~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg---~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~ 694 (917)
.|..-|.++.++...+.+.+|+ .|.|+|||+... ..+..+.. ...-|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4666778888888888999887 578999999743 22333332 34678999999999999999999999999997
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
......+. ......-....++.+||.+..++++.||.|.|||+.+...++.+. +|.+.+.|+.+++||..|.+|
T Consensus 496 apTprika-----eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 496 APTPRIKA-----ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred CCCcchhh-----hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCceeecC
Confidence 75221110 111223346678999999999999999999999999999999999 999999999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 775 GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 775 s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
+-|++|+.||++++..+....+.+.|.++...|.+ .+++|-.++.+.+...... ....+..|...|.++ ++.|+++
T Consensus 570 GlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred CCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCcee
Confidence 99999999999999999999999999999998754 5788888899988876543 345566789999999 5689999
Q ss_pred EEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 852 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++.+.|+-+..|...-|..+...+ ..+.|.++..|.|.++++||+.|....||.+.
T Consensus 649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 999999999999999999888877 46789999999999999999999999998763
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=214.01 Aligned_cols=338 Identities=13% Similarity=0.132 Sum_probs=263.6
Q ss_pred cccceeeeccCCcceEEEEEeCCCc---EEEEEecCCceEEEeccCCc---------------------ee---------
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGI---SVASVGRDAMLKIHSLKTGR---------------------QE--------- 615 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~---~Lasgs~Dg~I~IWd~~t~~---------------------~~--------- 615 (917)
..+.+..+.||.+.|.+++|...+. +|||+|+|..||||.+.-+. ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4566788999999999999998654 88999999999999874222 01
Q ss_pred -eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--e-----eEEeccCCCceeEEEecCCCCEEEEEECCCe
Q psy3053 616 -RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--I-----VTELAGHEDAISCVAWDEKRKRLISGSWDCT 687 (917)
Q Consensus 616 -~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~-----i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt 687 (917)
..+.+|..-|.++.|+|.+..|++++.|.++.+|..++.. - +..+.|....-.+..|+|+++.+++-+.-|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 1134788999999999999999999999999999876542 1 2233345567889999999999999999999
Q ss_pred EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe-eeEEec--CCCCCCeEEEEE
Q psy3053 688 VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL-MTQQLS--DDINASVNGVLF 764 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~-~~~~l~--~~h~~~V~~v~f 764 (917)
.++|..... ..........+|.+.|+.++|+|.|.++++.+.|-+-+++-.-..+ .-..+. .-|+...+|+++
T Consensus 340 ~hlWkt~d~----~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 340 FHLWKTKDK----TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred EEEEeccCc----cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 999983222 1122333456899999999999999999999999999998654221 112221 258889999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCC----------C---------------------------------eE----EE-----
Q psy3053 765 SEDGCRVLSCGNNCMLNVYDLTT----------G---------------------------------MQ----VC----- 792 (917)
Q Consensus 765 spdg~~L~s~s~Dg~I~iwDl~t----------g---------------------------------~~----i~----- 792 (917)
-+....+++|.....+++|+... + .. ..
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 98777888998888999997431 0 00 00
Q ss_pred -------------------------EeecCCceEEEEEeCCCEEEEEeCC------CeEEEEECCCCEEEEEEecCCCce
Q psy3053 793 -------------------------NKVFEEKLLCLSWAGEEKVILGGAL------GMVYLVDLIQVQLLKQVRAHKDAV 841 (917)
Q Consensus 793 -------------------------~~~~~~~i~~l~~s~~~~lv~gs~d------G~I~vwdl~~~~~i~~l~~h~~~V 841 (917)
...|...+.|++.++++.+++.+.. ..|++|+..+......+.+|+-.|
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV 575 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence 0013345889999988776654432 469999999999999999999999
Q ss_pred EEE--eecCCEEEEEeCCCeEEEEECcCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 842 LSL--HFDNCTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 842 ~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~----l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+.+ +|||++|++.+.|.++.+|....... ....+.|+.-|+++.|+|++.+++|+|.|.+|+||..+..
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999 78999999999999999998753321 2346789999999999999999999999999999998643
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=212.58 Aligned_cols=279 Identities=18% Similarity=0.260 Sum_probs=230.4
Q ss_pred ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-eeEEeccC-CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q psy3053 620 LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-IVTELAGH-EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697 (917)
Q Consensus 620 ~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-~i~~l~~H-~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~ 697 (917)
....+|.++|++.+.+.||++-.||.|-+|++..+- +...+.++ ...|.+++|+ ++..|++.+.+|+|.-||+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l- 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL- 100 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC-
Confidence 345689999999999999999999999999998763 34455555 4679999999 5678999999999999999876
Q ss_pred CCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeC
Q psy3053 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
..........+.|++++.+|.+..+++|++||.+..++...+.......- ...+.|.+++|+|++..+++|+.
T Consensus 101 ------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 101 ------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred ------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 34455566788999999999999999999999888888888766554332 34589999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEee-----cCCc----eEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--e
Q psy3053 777 NCMLNVYDLTTGMQVCNKV-----FEEK----LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--H 845 (917)
Q Consensus 777 Dg~I~iwDl~tg~~i~~~~-----~~~~----i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s 845 (917)
||.|++||..++..+.... .... +.++.+-.++.+++|.+.|.|.+||...+.++.....|.+.|.|+ +
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 9999999999998776222 2221 445555577899999999999999999999999999999999999 5
Q ss_pred ecCCEEEEEeCCCeEEEEECcCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 846 FDNCTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 846 ~dg~~Lasgs~DG~I~Iwdl~tg~~----l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.++.+++++|.|+.|..+...+++. ......|...|.+++..++ .|++||.|+++.+=...
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 5778999999999999998776643 2233568888999999876 89999999998876554
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=209.95 Aligned_cols=260 Identities=18% Similarity=0.245 Sum_probs=217.9
Q ss_pred eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE----E-------------e-ccCCCceeEEEecCCC
Q psy3053 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT----E-------------L-AGHEDAISCVAWDEKR 676 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~----~-------------l-~~H~~~Vt~l~~spd~ 676 (917)
...+..|..++.+++++|+++++++++.+|+|.-|++.+|+... . - .+|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34455688899999999999999999999999999998886331 1 1 2788899999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN 756 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~ 756 (917)
++|++|+.|..|.||+..+. .......+|.+.|.+++|-.....+.+++.|+++++|++.....+.++. +|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~-------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHq 286 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQ 286 (479)
T ss_pred cEEEecCCCceEEEecCccc-------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCc
Confidence 99999999999999999886 2344467999999999999988999999999999999999888888888 899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~ 836 (917)
+.|.++....-++.+.+|+.|+++++|++.....+....+.+.+-|+++-.+..+++|+.+|.|.+|++...+++.+...
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeec
Confidence 99999999888888888889999999999766666666677889999999888999999999999999988888766542
Q ss_pred CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 837 HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 837 h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
..+.+ ++. + -..+...|++++..|...++|+|+.+|.|++|.++..
T Consensus 367 AHgv~----~~~---------------~---------~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 367 AHGVI----PEL---------------D---------PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccc----CCc---------------c---------ccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 11111 111 0 0112368999999999999999999999999999754
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-23 Score=215.81 Aligned_cols=248 Identities=17% Similarity=0.221 Sum_probs=217.0
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
...+..|.+.|..+.|-++...|++|+.|..|++|++.... ......+.+..+.|+++.+.+++.++++++.|+.
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 44567799999999999998999999999999999987652 1223345567788999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeC
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~ 816 (917)
+++|++...+...++. +|.+.|+++.|......+++|+.|.+++.||+..+.+..+.-..+.+..+...+. .+++|..
T Consensus 243 ~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~-~~~SgH~ 320 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSIS-DVISGHF 320 (459)
T ss_pred eeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecce-eeeeccc
Confidence 9999999999999999 7999999999998777799999999999999999888887777777777777744 7889999
Q ss_pred CCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCC----CCCEEEEEEcCCC
Q psy3053 817 LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH----EDAISCVAWDEKR 890 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h----~~~V~slafSpdg 890 (917)
|++|++||.++..+....+.+. .|+++ +++|..+.+.+.|.++.+.|+++......+.+. ....+.+.|||++
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 9999999999999999988776 88888 779999999999999999999998888777542 2348899999999
Q ss_pred CEEEEEeCCCcEEEEecCcceE
Q psy3053 891 KRLISGNLVGAPKLYATEFYLL 912 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl~~~ll 912 (917)
.|+++||.||.|+||++.+..+
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred ceeeeccCCCcEEEEEccCceE
Confidence 9999999999999999986643
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=218.15 Aligned_cols=342 Identities=15% Similarity=0.193 Sum_probs=256.6
Q ss_pred HHHHHHHhhhCCCccccccCCCCCcccccccccc-----cccccccccc-ccccCCcc--ccceeeeccCCcceEEEEEe
Q psy3053 518 HALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLL-----KHSTILSDVS-NSWCDKSI--LEPLHFCHSHKEAITAVAIC 589 (917)
Q Consensus 518 ~a~e~~i~~fGQ~P~qLF~~pHP~r~~~~~~~~~-----~~~~~f~d~~-~~w~~~~~--l~~~~~l~~H~~~Vtsv~fS 589 (917)
+++-.-+.+.-| |..+|..+.|.+......... ..+..+.|.. .+||.... ....+.+-.|...|+.|.--
T Consensus 300 halg~d~a~~~q-~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~ 378 (1080)
T KOG1408|consen 300 HALGSDTANLSQ-PEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENL 378 (1080)
T ss_pred cccccchhhccc-ccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccc
Confidence 334334444555 777888888777543322111 1122233332 57885543 33345567799999988765
Q ss_pred CC-----------CcEEEEEecCCceEEEeccCCc---eee----------------------------------eeecc
Q psy3053 590 GE-----------GISVASVGRDAMLKIHSLKTGR---QER----------------------------------SAVLS 621 (917)
Q Consensus 590 pd-----------g~~Lasgs~Dg~I~IWd~~t~~---~~~----------------------------------~~~~~ 621 (917)
|- ...++|++.|++|++|+++.+. ..+ +.-..
T Consensus 379 p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~ 458 (1080)
T KOG1408|consen 379 PCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS 458 (1080)
T ss_pred cccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc
Confidence 51 1347899999999999987521 100 00112
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecC---CCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE---KRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp---d~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
...+.+++++|++++||+|..-|+++||++...+....+.+|...|.|+.++. ..++||++|+|.-|.|+|+...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-- 536 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-- 536 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--
Confidence 34688999999999999999999999999999999999999999999999985 3578999999999999998765
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCC--CEEEEEECCCeEEEEECCCCeeeEEec----CCCCCCeEEEEEecCCCEEE
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDN--NQLAVGTEAGELIIWSLENHLMTQQLS----DDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg--~~Lasgs~dG~I~iwDl~~~~~~~~l~----~~h~~~V~~v~fspdg~~L~ 772 (917)
........+|...|+++.|-..| ..+++++.|..|.+-..........+. ......+..++..|..++++
T Consensus 537 ----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 537 ----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred ----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 22344567899999999998877 678888888877643332111111111 12346788999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--e
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--H 845 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s 845 (917)
+++.|+.|+|||+.+|+....+. +++...-+..+|.+ ++++.+.|.++.++|..+|+++.+..||...|+.+ .
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 99999999999999999987765 34667778888876 46778899999999999999999999999999999 5
Q ss_pred ecCCEEEEEeCCCeEEEEECc
Q psy3053 846 FDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 846 ~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
+|.+.|++.+.||.|.||.+.
T Consensus 693 nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccchhheeecCCceEEEEECc
Confidence 588999999999999999875
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=205.35 Aligned_cols=213 Identities=16% Similarity=0.258 Sum_probs=189.2
Q ss_pred CccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 567 KSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 567 ~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
.+.-+.+.+++||...|+.+.++++...+++++.|..|+||.............|..+|+.+..+|.|.++++++.||+.
T Consensus 248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence 34456778899999999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred EEEEeccCeeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 647 VIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
.+.|+++|..+..... ..-.+++.+|+|||..+.+|+.||.|++||+.++ .....+.+|.++|..++|+.+
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-------~~~a~Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-------TNVAKFPGHTGPVKAISFSEN 400 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-------cccccCCCCCCceeEEEeccC
Confidence 9999999998776654 2345899999999999999999999999999876 345567789999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q psy3053 725 NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~ 786 (917)
|-++++++.|+.|++||++..+...++.......+.++.|.+.|.+++.++.|=.|++++-.
T Consensus 401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence 99999999999999999999888887775555689999999999999999887666666533
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=206.32 Aligned_cols=288 Identities=15% Similarity=0.279 Sum_probs=231.2
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccC--CceeeeeeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCee
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t--~~~~~~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.+.|++|.|+|....+++++.||++++|.++. ...++++.....+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 56899999999999999999999999999864 446778888899999999999999 889999999999999998875
Q ss_pred eE--EeccCC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 657 VT--ELAGHE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 657 i~--~l~~H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
.+ ...++. ..+.....++++++|+.++..|.|.+....++ .........+.|..++|+.+++.|++++.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~--------eli~s~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK--------ELITSFKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh--------hhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence 43 334444 35677888999999999999999999987765 45555667889999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~ 813 (917)
+|.|.+||++...+++.+.....-.-++++.+++|.++|+|+..|.|.|||..+...-
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s---------------------- 422 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS---------------------- 422 (514)
T ss_pred CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc----------------------
Confidence 9999999999999998887444445567888899999999999999999996542110
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC--CCeEEEEECcCCeEEEEecCC---CCCEEEEEE
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW--DSCVVIYDVECGRIVTELAGH---EDAISCVAW 886 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~--DG~I~Iwdl~tg~~l~~l~~h---~~~V~slaf 886 (917)
.+.+++..+..-...|+++ ++|++.||.+|. +..+++-.+.+......+... -+.|+|++|
T Consensus 423 ------------~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 423 ------------TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF 490 (514)
T ss_pred ------------CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe
Confidence 1223444444444556666 446677666653 567888888777766665433 356899999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCc
Q psy3053 887 DEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl~~ 909 (917)
||.|.+||.|..+|.|.+|.+..
T Consensus 491 SP~sG~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 491 SPNSGYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred cCCCceEEeecCCCceeeEeecc
Confidence 99999999999999999999864
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-21 Score=195.07 Aligned_cols=282 Identities=15% Similarity=0.171 Sum_probs=211.6
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee--eee--eccccceEEEEEeCCCCEEEEEe-cccEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE--RSA--VLSSMTLSSLCILPDNCTMLVGC-WDSCVV 647 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~~--~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~ 647 (917)
+..+++|++.|++++||.||+.|+|++.|++|++|++.+-... +.+ ...-..-+.++|+||-+-+++.. ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568999999999999999999999999999999999764321 111 11223457889999987665554 456799
Q ss_pred EEEecc---CeeeE---------EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 648 IYDVEC---GRIVT---------ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 648 Iwdl~t---g~~i~---------~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
+|.+.. |.... .-..|.-.|-.+-...++.+|+|++.|..|.+|++... .+.........
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq--------~L~~idtnq~~ 230 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ--------LLQSIDTNQSS 230 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc--------eeeeecccccc
Confidence 998753 22111 11236666777777788899999999999999999743 22223333445
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCC---C-----eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLEN---H-----LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~---~-----~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
-...++||+|+++++++-.-.|++|.+-- | ..+..+. +|...|..++|+++...+++.+.||++++||..-
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 56788999999999999988999998632 2 2234455 8999999999999999999999999999999753
Q ss_pred CeEE-------EEe-----ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-cCCCceEEEee--cCCEEE
Q psy3053 788 GMQV-------CNK-----VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLHF--DNCTML 852 (917)
Q Consensus 788 g~~i-------~~~-----~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~h~~~V~sis~--dg~~La 852 (917)
.-.. ... ...+....++.+|++.+++.+....+.++..++++....+. .|...|.++++ +|++++
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEe
Confidence 2111 111 11233457889999999999999999999999998777664 69999999955 889998
Q ss_pred EEeCCCeEEEEE
Q psy3053 853 VGCWDSCVVIYD 864 (917)
Q Consensus 853 sgs~DG~I~Iwd 864 (917)
+++ |..+++..
T Consensus 390 tcG-dr~vrv~~ 400 (420)
T KOG2096|consen 390 TCG-DRYVRVIR 400 (420)
T ss_pred eec-ceeeeeec
Confidence 886 55677765
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=214.70 Aligned_cols=313 Identities=19% Similarity=0.248 Sum_probs=237.6
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCC--EEEEEecccEEEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC--TMLVGCWDSCVVIYD 650 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~--~Lasgs~Dg~I~Iwd 650 (917)
-..++||++.|.||...|.|.+|++|+.||+|+||.+.+|.+++.+.... .|.|++|+|.+. .||++-. +.+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~-~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVG-ECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEec-CceEEeC
Confidence 45689999999999999999999999999999999999999999887654 799999999765 4444443 3366666
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEE----ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISG----SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sg----s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
..-|..+..-. ....|+++ ..|+.+..|.-....... ..+.....|...|..+.|+..|.
T Consensus 471 p~~G~~~e~~~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~---~~v~~~I~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 471 PIFGDRLEVGP-------------TKELLASAPNESEPDAAVVTWSRASLDELE---KGVCIVIKHPKSIRQVTWHRKGD 534 (733)
T ss_pred ccccchhhhcc-------------hhhhhhcCCCccCCcccceeechhhhhhhc---cceEEEEecCCccceeeeecCCc
Confidence 55442211110 11122222 346678888755331111 12445678899999999999999
Q ss_pred EEEEEECC---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CCceEE
Q psy3053 727 QLAVGTEA---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF-EEKLLC 802 (917)
Q Consensus 727 ~Lasgs~d---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-~~~i~~ 802 (917)
+|++...+ ..|.|+++.......-+. ...+.|.++.|+|...++++++. ..|++||+..+..+..... ...+..
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISS 612 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeee
Confidence 99987654 468899998776655554 45788999999999888888775 4799999987655544333 334778
Q ss_pred EEEeCCC-EEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEEeecCC--EEEEEeCCCeEEEEECc------CC---e
Q psy3053 803 LSWAGEE-KVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHFDNC--TMLVGCWDSCVVIYDVE------CG---R 869 (917)
Q Consensus 803 l~~s~~~-~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~dg~--~Lasgs~DG~I~Iwdl~------tg---~ 869 (917)
++.++.| .+++|+.++.+..+|+.-. ++.+++..|...++++++.++ ++++|+.||++.|+.-. .. -
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 8888743 7999999999999999754 678888999999999977665 58999999999998521 11 2
Q ss_pred EEEEecCCCCC----EEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3053 870 IVTELAGHEDA----ISCVAWDEKRKRLISGNLVGAPKLY 905 (917)
Q Consensus 870 ~l~~l~~h~~~----V~slafSpdg~~LaSgs~DG~V~IW 905 (917)
++..+.+|... |..+.|+|...+|+|+|.||+|++|
T Consensus 693 PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 56778888765 9999999999999999999999998
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=190.61 Aligned_cols=233 Identities=16% Similarity=0.248 Sum_probs=199.0
Q ss_pred eeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCC
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~ 696 (917)
.+.+|..+++.+.+..+|.+|.+++.|.+..+|-..+|+.+.++.||+++|+|+..+-+.+.++||+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEECC-------CCeeeEEecCCCCCCeEEEEE
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWSLE-------NHLMTQQLSDDINASVNGVLF 764 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwDl~-------~~~~~~~l~~~h~~~V~~v~f 764 (917)
..........+|..+.|+++|++++..+.+ +.|.++|++ ..++...+. .+...++.+.|
T Consensus 85 --------k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~W 155 (327)
T KOG0643|consen 85 --------KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALW 155 (327)
T ss_pred --------cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeee
Confidence 455667788999999999999988887654 679999988 344455555 56688888888
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE
Q psy3053 765 SEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL 844 (917)
Q Consensus 765 spdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si 844 (917)
+|-+..|++|..||.|.+||+++|+.. +.....|...|+.+
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~---------------------------------------v~s~~~h~~~Ind~ 196 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKEL---------------------------------------VDSDEEHSSKINDL 196 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCcee---------------------------------------eechhhhccccccc
Confidence 888888888888888888888876433 22334567777777
Q ss_pred --eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 845 --HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 845 --s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~ 898 (917)
++|..++++|+.|.+-++||..+...++++. -..||++.+++|-...++.||.
T Consensus 197 q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 197 QFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred cccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCC
Confidence 7799999999999999999999999999987 4679999999998777776653
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=215.94 Aligned_cols=277 Identities=17% Similarity=0.211 Sum_probs=215.9
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC-ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG-RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~-~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
.+|++.-+.|+|.|+|.+|++++.||.|++|+..+. +...++..++..|.+++. ++..+++|+.+++|.+|...++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 478999999999999999999999999999998765 455555556666776654 55699999999999999999988
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
.-..+...+-++++++++.+|+++|.||.|-.|++-++.+. .......+|.++|.++.++|.+++||+.+.||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-------s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-------SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-------chheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 77777777889999999999999999999999999998776 34556789999999999999999999999999
Q ss_pred eEEEEECCCCeeeEEecCC-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC
Q psy3053 736 ELIIWSLENHLMTQQLSDD-------INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~-------h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~ 808 (917)
.|++||+.++.....+..- ....+..++|+|+|..+++.+.|+.|.+|+..+..........
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~----------- 229 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK----------- 229 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-----------
Confidence 9999999998776666421 1345677999999889999999999999998776544322110
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEE--EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS--LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~s--is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
.+...+.+ .+|.|.|||+++.||.|.|||+++-.. ......|.+++|
T Consensus 230 ---------------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw 278 (933)
T KOG1274|consen 230 ---------------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAW 278 (933)
T ss_pred ---------------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEec
Confidence 11121333 366788888888888888888876221 222456888888
Q ss_pred cCCCCEEEEEeCCCcEEE
Q psy3053 887 DEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~I 904 (917)
.|++..+-.....|...+
T Consensus 279 ~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 279 KPNANAITLITALGTLGV 296 (933)
T ss_pred CCCCCeeEEEeecccccc
Confidence 887766554444444333
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=205.20 Aligned_cols=251 Identities=16% Similarity=0.244 Sum_probs=193.6
Q ss_pred eccccceEEEEEeCCC-CEEEEEecccEEEEEEeccCe----------eeEEeccCCCceeEEEecCC-CCEEEEEECCC
Q psy3053 619 VLSSMTLSSLCILPDN-CTMLVGCWDSCVVIYDVECGR----------IVTELAGHEDAISCVAWDEK-RKRLISGSWDC 686 (917)
Q Consensus 619 ~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwdl~tg~----------~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~Dg 686 (917)
-.|.+.|..+...|.. ..+|+++..+.|.|||..... +-..+.||.+.-.+++|++. .-.|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3477788888888865 567777889999999986421 12278899998889999884 45899999999
Q ss_pred eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCC--CeeeEEecCCCCCCeEEEE
Q psy3053 687 TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLEN--HLMTQQLSDDINASVNGVL 763 (917)
Q Consensus 687 tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~--~~~~~~l~~~h~~~V~~v~ 763 (917)
+|++||+.................+|.+.|..++|++- ..++++++.|+.+.|||+++ .+...... +|.+.|+|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEE
Confidence 99999998764433333455567899999999999994 57889999999999999995 33444444 8999999999
Q ss_pred Eec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceE
Q psy3053 764 FSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL 842 (917)
Q Consensus 764 fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~ 842 (917)
|+| ++..||+|+.|++|.+||+++-. +++.++.+|...|.
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~---------------------------------------~~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLN---------------------------------------KPLHTFEGHEDEVF 320 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcc---------------------------------------cCceeccCCCcceE
Confidence 999 56678888889999999987542 23455666777777
Q ss_pred EEee---cCCEEEEEeCCCeEEEEECcC--------------CeEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEE
Q psy3053 843 SLHF---DNCTMLVGCWDSCVVIYDVEC--------------GRIVTELAGHEDAISCVAWDEKRKR-LISGNLVGAPKL 904 (917)
Q Consensus 843 sis~---dg~~Lasgs~DG~I~Iwdl~t--------------g~~l~~l~~h~~~V~slafSpdg~~-LaSgs~DG~V~I 904 (917)
++.+ ....||+++.|+.+.|||+.. .+++..-.||.+.|..+.|+|...+ ++|.+.|+.+.|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 7733 345577777788888887742 1345667899999999999998765 668899999999
Q ss_pred EecCc
Q psy3053 905 YATEF 909 (917)
Q Consensus 905 Wdl~~ 909 (917)
|+...
T Consensus 401 W~~s~ 405 (422)
T KOG0264|consen 401 WQMAE 405 (422)
T ss_pred eeccc
Confidence 99863
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=189.77 Aligned_cols=290 Identities=16% Similarity=0.282 Sum_probs=221.2
Q ss_pred eccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCce---------------eeeeeccccceEEEEEeC-CCCEEE
Q psy3053 576 CHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQ---------------ERSAVLSSMTLSSLCILP-DNCTML 638 (917)
Q Consensus 576 l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~---------------~~~~~~~~~~V~sl~~sp-d~~~La 638 (917)
...|.+.|.++.+.+ .|+++++|+.||.|.+||++.... ...-.+|...|.++.|-| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 367899999999988 589999999999999999975431 111235777899999998 556888
Q ss_pred EEecccEEEEEEeccCeeeEEeccCCCceeEEEecC---CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE---KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp---d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
+++.|.++++||..+.+....+. -.+.|.+-+++| ...++|+|..|-.|++-|+.++ .....+.+|.+.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-------s~sH~LsGHr~~ 190 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-------SFSHTLSGHRDG 190 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-------cceeeeccccCc
Confidence 89999999999999988776665 556788888877 3457888899999999999887 345567899999
Q ss_pred eEEEEEeCCCC-EEEEEECCCeEEEEECCCC-eeeEE-------------ecCCCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 716 IKCLAISKDNN-QLAVGTEAGELIIWSLENH-LMTQQ-------------LSDDINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 716 V~~l~~spdg~-~Lasgs~dG~I~iwDl~~~-~~~~~-------------l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
|.++.|+|... .|++|+.||.|++||++.. .+... ....|.+.|.+++|+.+|.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 99999999876 4678999999999999854 11111 123577899999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC-ceEEEeecCCEEEEEeCCCe
Q psy3053 781 NVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD-AVLSLHFDNCTMLVGCWDSC 859 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-~V~sis~dg~~Lasgs~DG~ 859 (917)
++|+..+|....... ++ ....-..|-+ .+. +.+...++---.++.
T Consensus 271 r~wn~~~G~ntl~~~--g~------------------------------~~~n~~~~~~~~~~--~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 271 RVWNMESGRNTLREF--GP------------------------------IIHNQTTSFAVHIQ--SMDSDVFVLFPNDGS 316 (397)
T ss_pred EEeecccCccccccc--cc------------------------------ccccccccceEEEe--ecccceEEEEecCCe
Confidence 999998875431100 00 0000000000 011 222233333334578
Q ss_pred EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 860 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+.++++-.|..+..+.+|-..|.+.++-|+-+...+|+.|+.+..|-.
T Consensus 317 lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 317 LALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999889999999999999999999999999986
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=193.05 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=218.7
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+..|..+|++++||+||+.|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6789999999999999999999999999999889999999999999999999999999999999999999999888876
Q ss_pred CCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 663 HEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 663 H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
..++|+.+.|+|... ..++.-.+..-.+-++..+....-+. ...........+..|.+.|+++++|...|.+.++|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~---d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK---DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC---CCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 678999999999543 33333334434455544321100000 00011122234456889999999999999999999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
..+.+++..++......|..+.++..|+.++.-+.|+.|+.|+++.- ..-+.+|.+.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di-----------------------~~~~r~~e~e 238 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI-----------------------DDEGRDGEVE 238 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh-----------------------cccCccCCcC
Confidence 99999988887444478999999999999999999999999997521 1111111111
Q ss_pred EEECCCCEEEEEEe----cCCCceEEEeecCCEEEEEeC-CCeEEEEECcCCeEEEEecCCC-CCEEEEEEcCCCCEEEE
Q psy3053 822 LVDLIQVQLLKQVR----AHKDAVLSLHFDNCTMLVGCW-DSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLIS 895 (917)
Q Consensus 822 vwdl~~~~~i~~l~----~h~~~V~sis~dg~~Lasgs~-DG~I~Iwdl~tg~~l~~l~~h~-~~V~slafSpdg~~LaS 895 (917)
+.+.+. .-.-.-.|.+-+|.++++|+. -..++||.-..|.+++.+.|.. .....+.|+|-...+++
T Consensus 239 --------~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 239 --------PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred --------hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence 000000 001112344557888777764 3579999999999999999877 56788999999888888
Q ss_pred EeCCCcEEEEecCc
Q psy3053 896 GNLVGAPKLYATEF 909 (917)
Q Consensus 896 gs~DG~V~IWdl~~ 909 (917)
- ..|.|+||....
T Consensus 311 i-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 311 I-ASGVVYIWAVVQ 323 (405)
T ss_pred c-cCCceEEEEeec
Confidence 7 789999999754
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=205.95 Aligned_cols=278 Identities=20% Similarity=0.224 Sum_probs=230.3
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC---ceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG---RQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~---~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
-.|.+-|.++++|...+.++||+. |.|+|||+... ..+..+. ....-+.+|.+.|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 368899999999999999999875 78999998642 1222222 23566899999999999999999999999999
Q ss_pred ccCee--eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 652 ECGRI--VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 652 ~tg~~--i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
..... ...+....-...+++.+||.+..+++..||.|.|||+... ..+..+.+|.+.+.||.++++|..|.
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-------~~VrqfqGhtDGascIdis~dGtklW 567 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASCIDISKDGTKLW 567 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-------eeeecccCCCCCceeEEecCCCceee
Confidence 86543 3344444456778999999999999999999999999875 34556789999999999999999999
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE 809 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~ 809 (917)
+|+-|.+|+.||++.++.+.+.. ....|.++..+|.+.++++|-.++.+.+......+....-.+++-|.++.|..-|
T Consensus 568 TGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence 99999999999999998776654 6688999999999999999999999999888766666666678889999998755
Q ss_pred -EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 810 -KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 810 -~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
.+++.+.|+-+..|...-|..+...+. ...|++. +.|.++|++|+.|..-.||.+
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 577888999999999998887776653 3455554 889999999999988888765
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=207.78 Aligned_cols=287 Identities=16% Similarity=0.213 Sum_probs=207.7
Q ss_pred EEEeCC---CcEEEEEecCCceEEEeccCCc------eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 586 VAICGE---GISVASVGRDAMLKIHSLKTGR------QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 586 v~fSpd---g~~Lasgs~Dg~I~IWd~~t~~------~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
..|++. ...|+.+..||.|.++|..... .++....|...|..+.|.|....|++++.|.++++||++++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 445442 3578999999999999986432 2355667999999999999778999999999999999999998
Q ss_pred eEE--eccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCC------------C----ccCCcc----eeeeccCC
Q psy3053 657 VTE--LAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWS------------H----MKPSKS----LVSQLDLD 713 (917)
Q Consensus 657 i~~--l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~------------~----~~~~~~----~~~~~~h~ 713 (917)
+.. +.||.+.|.++||.+. ...+++|++||.|.|||++.... . ..+... ......+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 877 8899999999999984 56789999999999999865420 0 001111 11122344
Q ss_pred CceEE---EEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEecC-------CC---CCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 714 NRIKC---LAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLSD-------DI---NASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 714 ~~V~~---l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~-------~h---~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
..|.+ +.+..|...||+++. |+.|++||++.......... .+ ...+.++.....|.+|.+.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44555 556678888888877 99999999997654433221 11 234556666666777777777888
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC---Cce-EEEeecCCEEEEEe
Q psy3053 780 LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK---DAV-LSLHFDNCTMLVGC 855 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~---~~V-~sis~dg~~Lasgs 855 (917)
|+.|++.+-..- ++..+.++. -.+ .+++||+.++++|+
T Consensus 295 Iy~ynm~s~s~s--------------------------------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 295 IYFYNMRSLSIS--------------------------------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred EEEEeccccCcC--------------------------------------chhhccCcccceeeeeeecCCCCceEeccC
Confidence 888877543211 111111111 112 23489999999999
Q ss_pred CCCeEEEEECcCCe-EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcc
Q psy3053 856 WDSCVVIYDVECGR-IVTELAGHEDAISCVAWDEKR-KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~-~l~~l~~h~~~V~slafSpdg-~~LaSgs~DG~V~IWdl~~~ 910 (917)
.|+..++|.+.+.+ ....+.||.-.|++++|.|.. .-++|+++|..+++|++...
T Consensus 337 sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 SDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999998765 456678999999999998843 35777799999999999654
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=188.85 Aligned_cols=257 Identities=18% Similarity=0.222 Sum_probs=196.9
Q ss_pred eccccceEEEEEeCCCCEEEEEecccEEEEEEeccC---eeeEEeccCCCceeEEEecC--CCCEEEEEECCCeEEEEeC
Q psy3053 619 VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDE--KRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 619 ~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg---~~i~~l~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl 693 (917)
..|...|.++...--|+.||+++.|++|+|+.++.+ +.+.++.||.++|+.++|.. -|..||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 356677777777778999999999999999999864 56889999999999999965 7899999999999999997
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCCeEEEEECCCC--eeeEEecCCCCCCeEEEEEecC--
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENH--LMTQQLSDDINASVNGVLFSED-- 767 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG~I~iwDl~~~--~~~~~l~~~h~~~V~~v~fspd-- 767 (917)
..+. .........|...|++++|.|. |-.|++|+.||.|.+.+.++. -....+...|.-.|++++|.|.
T Consensus 88 ~~g~-----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 88 ENGR-----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred CCCc-----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 7651 2233335678999999999985 578999999999999987654 3334444589999999999995
Q ss_pred -CCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE--EEEEEecCCCceEEE
Q psy3053 768 -GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ--LLKQVRAHKDAVLSL 844 (917)
Q Consensus 768 -g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~h~~~V~si 844 (917)
|..+-.+..+ +-.++++|+.|..|.+|+..++. .-.++.+|.+.|..+
T Consensus 163 ~g~~~~~~~~~-----------------------------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 163 PGSLVDQGPAA-----------------------------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV 213 (299)
T ss_pred CccccccCccc-----------------------------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence 3221111100 11267788888888888777653 334578899999888
Q ss_pred ee------cCCEEEEEeCCCeEEEEECcCC--eE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 845 HF------DNCTMLVGCWDSCVVIYDVECG--RI-VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 845 s~------dg~~Lasgs~DG~I~Iwdl~tg--~~-l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++ -..+||+++.||+|.||..+.. .. ...+......+..+.||..|..|+.++.|+.|.+|.-+.
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 43 2357999999999999976521 11 222333567899999999999999999999999998653
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=201.25 Aligned_cols=220 Identities=17% Similarity=0.203 Sum_probs=193.3
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-----
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC----- 653 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t----- 653 (917)
-.++|.|++-+|+|.+|+.|+..|.|.+|.+.+|..+..+..|-.+|+|+.|+.||.++++|+.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred ----CeeeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 654 ----GRIVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 654 ----g~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
-+....+..|+-+|+++...+. ..+|+|+|.|.++++||+..+ .+......+..+.+++++|.++.
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--------~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--------VLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--------eeeEEEecCCcceeEEEcccccE
Confidence 3567888999999999998764 468999999999999999877 55556677889999999999999
Q ss_pred EEEEECCCeEEEEECCCCe----------------eeEEecCCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 728 LAVGTEAGELIIWSLENHL----------------MTQQLSDDINA--SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~----------------~~~~l~~~h~~--~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
+.+|+.+|.|.+.++.... ....+. +|.+ .|+|++++-||..|++|+.||.++|||+.+.+
T Consensus 232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEecCCcceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 9999999999988775432 223333 5666 99999999999999999999999999999999
Q ss_pred EEEEee-cCCceEEEEEeC
Q psy3053 790 QVCNKV-FEEKLLCLSWAG 807 (917)
Q Consensus 790 ~i~~~~-~~~~i~~l~~s~ 807 (917)
+++... ..++|+.+.+.+
T Consensus 311 ~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 311 CIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred HHHHHhhhccccceeEeec
Confidence 988877 778888887754
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=184.94 Aligned_cols=244 Identities=20% Similarity=0.331 Sum_probs=190.0
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC--CCCEEEEEECCCeEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK--DNNQLAVGTEAGELI 738 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasgs~dG~I~ 738 (917)
.+|.+-|.++.|.+.|+.+||||.|++|+|||.+...... ........|++.|..+.|.+ -|+.+|+++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce---EEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 4689999999999999999999999999999975543222 23444567999999999976 379999999999999
Q ss_pred EEECCC---------CeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEE------ee------
Q psy3053 739 IWSLEN---------HLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCN------KV------ 795 (917)
Q Consensus 739 iwDl~~---------~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~------~~------ 795 (917)
||.-.. .....++. ...+.|+++.|.| -|-.+++++.||.++||+...-..+.. +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 997521 11223333 5678999999999 478899999999999999765433322 22
Q ss_pred --cCCceEEEEEeCC----CEEEEEeCC-----CeEEEEECCCC----EEEEEEecCCCceEEEeec------CCEEEEE
Q psy3053 796 --FEEKLLCLSWAGE----EKVILGGAL-----GMVYLVDLIQV----QLLKQVRAHKDAVLSLHFD------NCTMLVG 854 (917)
Q Consensus 796 --~~~~i~~l~~s~~----~~lv~gs~d-----G~I~vwdl~~~----~~i~~l~~h~~~V~sis~d------g~~Lasg 854 (917)
+..+..|+.|++. ..+++|+.+ +.+.+|....+ ..+.++.+|..+|+.+++. -..||++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 3456789999863 246666655 47888876543 3566778999999999652 3469999
Q ss_pred eCCCeEEEEECcCC--------------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 855 CWDSCVVIYDVECG--------------------RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 855 s~DG~I~Iwdl~tg--------------------~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.|| |+||++... +.+..+.+|.+.|+.+.|.-.|..|++.|.||+||+|..+.
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999 999998631 23556788999999999999999999999999999999864
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=211.88 Aligned_cols=280 Identities=15% Similarity=0.179 Sum_probs=214.4
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCcee----eeeecc---ccceEEEEEeC-CCCEEEEEecccEEEEEEec
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE----RSAVLS---SMTLSSLCILP-DNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~~~~~---~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~ 652 (917)
....+|...++-..|+.++. ..++|+.+...... ...... ...+..+.|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34566777788888887764 46777776543211 111111 12234456664 56799999999999999998
Q ss_pred c---CeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCE
Q psy3053 653 C---GRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQ 727 (917)
Q Consensus 653 t---g~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 727 (917)
. .+.+..+..|...|+++.|++ ..++|+|||.||+|++||++... ......+....|..+.|+| .+..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-------S~~t~~~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-------SKSTFRSNSESIRDVKFSPGYGNK 191 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-------ccccccccchhhhceeeccCCCce
Confidence 6 566778899999999999987 45789999999999999998762 3333455678899999999 5689
Q ss_pred EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCceEEEEE
Q psy3053 728 LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNKVFEEKLLCLSW 805 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~~~~~~i~~l~~ 805 (917)
++++.+.|.+.+||++...........|.++|.++.|+|++.+||+||.|+.|+|||..++. ....+....++.++.|
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW 271 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence 99999999999999997654333333899999999999999999999999999999998654 4456667788999999
Q ss_pred eCCCE--EEEEe--CCCeEEEEECCCC-EEEEEEecCCCceEEEeecC---CEEEEEeCCCeEEEEECcCC
Q psy3053 806 AGEEK--VILGG--ALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHFDN---CTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 806 s~~~~--lv~gs--~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~dg---~~Lasgs~DG~I~Iwdl~tg 868 (917)
-|... +++++ .|-.|+|||++.. -+..++..|...++.+.|++ ..+.+++.||+|..-.++++
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 98643 44433 3678999999765 46678889999999998754 56888999998876555443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-17 Score=184.27 Aligned_cols=327 Identities=25% Similarity=0.424 Sum_probs=257.4
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc-eeeeeeccc-cceEEEEE-eCCCC-EEEEEec-ccEEEEE
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR-QERSAVLSS-MTLSSLCI-LPDNC-TMLVGCW-DSCVVIY 649 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~~~~~~-~~V~sl~~-spd~~-~Lasgs~-Dg~I~Iw 649 (917)
....|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ..+..+.+ .+++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998876 555565533 36666666 77777 5555444 9999999
Q ss_pred Eecc-CeeeEEeccCCCceeEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC-
Q psy3053 650 DVEC-GRIVTELAGHEDAISCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN- 726 (917)
Q Consensus 650 dl~t-g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 726 (917)
+... ......+.+|...|.+++|+|++..+++++. |+.+++|+.... .......+|...+.+++++|++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-------KPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-------ceEEeeccCCCceEEEEEcCCcce
Confidence 9998 7888889999999999999999999999886 999999998763 23444555899999999999998
Q ss_pred EEEEEECCCeEEEEECCCCeeeE-EecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE-EEEe-ecCCceEEE
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQ-QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ-VCNK-VFEEKLLCL 803 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~-i~~~-~~~~~i~~l 803 (917)
.+++++.|+.+.+||...+.... .+. .|.... ...|++++..+++++.|+.+++|+...... .... .+...+.++
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE
Confidence 55555999999999998777777 454 666664 348999998999999999999999986654 3333 456789999
Q ss_pred EEeC-CCEEEEEeCCCeEEEEECCCCEEEEEEe--cCCCceEEEeec--CCEEEEE-eCCCeEEEEECcCCeEEEEecCC
Q psy3053 804 SWAG-EEKVILGGALGMVYLVDLIQVQLLKQVR--AHKDAVLSLHFD--NCTMLVG-CWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 804 ~~s~-~~~lv~gs~dG~I~vwdl~~~~~i~~l~--~h~~~V~sis~d--g~~Lasg-s~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.+.| ...+++++.++.+.+|+..+........ .|...+..+.+. +..++.+ ..|+.+.+|+............+
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 9998 4467778888889999999888776665 787777777652 2455555 67899999999887733333332
Q ss_pred CCCEEEEEEcCCCCEEEE-EeCCCcEEEEecCcceE
Q psy3053 878 EDAISCVAWDEKRKRLIS-GNLVGAPKLYATEFYLL 912 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaS-gs~DG~V~IWdl~~~ll 912 (917)
. .+..+.+++ ....++ +..++.+.+|+......
T Consensus 371 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 371 S-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred c-eEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 2 288999998 544444 68999999999986543
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-20 Score=196.69 Aligned_cols=259 Identities=20% Similarity=0.233 Sum_probs=197.4
Q ss_pred eccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCc----------eeeeeeccccceEEEEEeCCC-CEEEEEecc
Q psy3053 576 CHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGR----------QERSAVLSSMTLSSLCILPDN-CTMLVGCWD 643 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~----------~~~~~~~~~~~V~sl~~spd~-~~Lasgs~D 643 (917)
.-.|.+.|..+..-|.. ..+|+.+..+.+.|||..... ....+.+|...-.+++|++.. -.+++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999976 566777889999999986422 122677888777889999854 489999999
Q ss_pred cEEEEEEeccCe-------eeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 644 SCVVIYDVECGR-------IVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 644 g~I~Iwdl~tg~-------~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
++|.+||+.... ....+.+|.+.|..++|++ +...+++++.|+.+.|||+++. ..........|.++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-----~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-----TSKPSHSVKAHSAE 274 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-----CCCCcccccccCCc
Confidence 999999997532 3466889999999999998 4568899999999999999863 12233445689999
Q ss_pred eEEEEEeC-CCCEEEEEECCCeEEEEECCCCe-eeEEecCCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 716 IKCLAISK-DNNQLAVGTEAGELIIWSLENHL-MTQQLSDDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 716 V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
|.|++|+| ++..||+|+.|++|.+||+++.. .+..+. +|...|.+|.|||+ ...|++++.|+.+.+||+..-....
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999999 55788999999999999999864 455555 89999999999995 5678899999999999986421110
Q ss_pred EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeec---CCEEEEEeCCCeEEEEECc
Q psy3053 793 NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFD---NCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~d---g~~Lasgs~DG~I~Iwdl~ 866 (917)
. ++ -..+| ..+++..-.||...|..++++ .-.|++.+.|+.+.||+..
T Consensus 354 ~-------------~e-----da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 S-------------PE-----DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred C-------------hh-----hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0 00 00000 112344456788888888664 3468889999999999875
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-21 Score=215.71 Aligned_cols=253 Identities=22% Similarity=0.338 Sum_probs=209.6
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEe
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 672 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~ 672 (917)
.++..+..+-.+++|+... +..|...+.++..-..++.+++|++|..+-+|.+.....+..+.+|..+|.++.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3445555666778888643 3456777888877777889999999999999998877777789999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec
Q psy3053 673 DEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 673 spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~ 752 (917)
+++...|++|+.+|+|++||+..+ ..+..+.+|...+.+++|+|-+.+.+.|+.|+.+.+||.+...+...+.
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeA-------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEA-------KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred CcchhhhcccccCCceeeeehhhh-------hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 999999999999999999999876 3455678999999999999999999999999999999999888888888
Q ss_pred CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE
Q psy3053 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 753 ~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
+|...|..+.|+|+|++++++++|.++++||...|+.. .
T Consensus 152 -s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~----------------------------------------~ 190 (825)
T KOG0267|consen 152 -SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS----------------------------------------K 190 (825)
T ss_pred -CCcceeEEEeecCCCceeeccCCcceeeeecccccccc----------------------------------------c
Confidence 59999999999999999999999888888887766544 4
Q ss_pred EEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q psy3053 833 QVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV 899 (917)
Q Consensus 833 ~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D 899 (917)
.+.+|.+.+.++ +|..-.+++|+.|++|++||+++-+.+.........|.+.+|+|+++.+++|..+
T Consensus 191 ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 455555555555 3445567788888888888888888888777777888888888888888877654
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=183.97 Aligned_cols=247 Identities=17% Similarity=0.204 Sum_probs=195.6
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEE
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iw 649 (917)
.-..|++.|..+...--|++|||++.|++|+|+...+.. .+..+.+|.++|..++|.. -|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 346799999999999999999999999999999997643 5678899999999999975 79999999999999999
Q ss_pred EeccCee--eEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-
Q psy3053 650 DVECGRI--VTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD- 724 (917)
Q Consensus 650 dl~tg~~--i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 724 (917)
.-++|+- ......|...|++++|.|. |-.|+.|+.||.|.|.+.+.... .........|.-.|++++|.|.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~----w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG----WTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC----ccchhhhhccccccceeeecCcC
Confidence 9988843 3455679999999999885 56899999999999999876511 1122234568888999999985
Q ss_pred --C-----------CEEEEEECCCeEEEEECCCCe--eeEEecCCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEEC
Q psy3053 725 --N-----------NQLAVGTEAGELIIWSLENHL--MTQQLSDDINASVNGVLFSEDG----CRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 725 --g-----------~~Lasgs~dG~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspdg----~~L~s~s~Dg~I~iwDl 785 (917)
| +.|++|+.|..|+||+..+++ ....+. +|.+-|+.++|.|.- ..+++|+.||++.||..
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 4 569999999999999998763 233344 899999999999953 47999999999999987
Q ss_pred CCCeE----EEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 786 TTGMQ----VCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 786 ~tg~~----i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
..... .....++..+..++|+..| .|++++.|+.|.+|.-.
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 53211 1122355667788887544 45667777888888643
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-19 Score=181.66 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=208.9
Q ss_pred eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee-----eEEeccCCCceeEEEecCCCCEEE-EEECCCeEE
Q psy3053 616 RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI-----VTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVR 689 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~-----i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~ 689 (917)
..+++|...|++++|+.||+.||+++.|++|++|+++.-.. ++.- -.-+-.+.++|+||-+-++ ++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35678999999999999999999999999999999976321 1110 1123467889999876554 455566899
Q ss_pred EEeCCCCCCCccCC-----cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEE
Q psy3053 690 VWNTGASWSHMKPS-----KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLF 764 (917)
Q Consensus 690 vWdl~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~f 764 (917)
+|.+........+. ........|...+..+-....+.+|++++.|..|.+|+++ |+.+..+. .....-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceee
Confidence 99875442111111 1111223456667777777788999999999999999998 88888776 45566678899
Q ss_pred ecCCCEEEEEeCCCeEEEEECC---CCeE------EEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCC-------
Q psy3053 765 SEDGCRVLSCGNNCMLNVYDLT---TGMQ------VCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQ------- 827 (917)
Q Consensus 765 spdg~~L~s~s~Dg~I~iwDl~---tg~~------i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~------- 827 (917)
||+|+++++++-.-.|++|.+- .|.. .....|.+.+..++|+++. ++++.+.||++++||..-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999998889999863 2321 1224467789999999764 588999999999999852
Q ss_pred CEEEEEEe-----cCCCc-eEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 828 VQLLKQVR-----AHKDA-VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 828 ~~~i~~l~-----~h~~~-V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~-~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
.+.+++.. ....+ -.+++|+|+.||.+.. ..++++..++|+...++. .|...|++++|+++|++++|+|+ .
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-R 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-e
Confidence 12222221 11222 2455999998887654 469999999988777664 58999999999999999999874 4
Q ss_pred cEEEEe
Q psy3053 901 APKLYA 906 (917)
Q Consensus 901 ~V~IWd 906 (917)
.+++..
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 666655
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=196.47 Aligned_cols=254 Identities=17% Similarity=0.221 Sum_probs=194.0
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
.....+.+|+..|+++++.|.|..++|||.|-+|++||+............+. ......|.+++|++.|..|++.+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC--cccccccceeeecCCCCeEEEEecC
Confidence 34456788999999999999999999999999999999987654443322222 2345679999999999999999989
Q ss_pred CeEEEEECCCCeeeEEec-----------CCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeE-EEEeec-----
Q psy3053 735 GELIIWSLENHLMTQQLS-----------DDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQ-VCNKVF----- 796 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~-----------~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~-i~~~~~----- 796 (917)
...+++|-...+...... .+|...+++.+|+|+. ..+++++.||++++||+...+. ...+.+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 999999977655444332 3688899999999964 5789999999999999976432 222221
Q ss_pred -CCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEE---EEEEecCCC--ceEEE--eecCCEEEEEeCCCeEEEEECcC
Q psy3053 797 -EEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQL---LKQVRAHKD--AVLSL--HFDNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 797 -~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~---i~~l~~h~~--~V~si--s~dg~~Lasgs~DG~I~Iwdl~t 867 (917)
.-.++.++|++++. +++|+.||.|.+|+..+... ...-.+|.. .|+|+ ++||++|++-+.|+++++||++.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 23478899998876 66788999999999865432 223346766 89999 66999999999999999999986
Q ss_pred Ce-EEEEecCC--CCCEEEEEEcCCCCEEEEEe------CCCcEEEEecCcc
Q psy3053 868 GR-IVTELAGH--EDAISCVAWDEKRKRLISGN------LVGAPKLYATEFY 910 (917)
Q Consensus 868 g~-~l~~l~~h--~~~V~slafSpdg~~LaSgs------~DG~V~IWdl~~~ 910 (917)
.+ ++....+- .-+-+.++|||+.+.|+||+ ..|.+.++|.-+.
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce
Confidence 54 55554443 23457899999999999986 4577888887644
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-17 Score=181.75 Aligned_cols=337 Identities=25% Similarity=0.395 Sum_probs=262.1
Q ss_pred ccccCCccccceeeeccCC-cceEEEEE-eCCCc-EEEEEec-CCceEEEeccC-CceeeeeeccccceEEEEEeCCCCE
Q psy3053 562 NSWCDKSILEPLHFCHSHK-EAITAVAI-CGEGI-SVASVGR-DAMLKIHSLKT-GRQERSAVLSSMTLSSLCILPDNCT 636 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~-~~Vtsv~f-Spdg~-~Lasgs~-Dg~I~IWd~~t-~~~~~~~~~~~~~V~sl~~spd~~~ 636 (917)
.+|+..........+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|.+++++|++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 169 (466)
T COG2319 90 KLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL 169 (466)
T ss_pred EEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCE
Confidence 4566554433455566644 37777777 78887 5555444 99999999988 7788888999999999999999998
Q ss_pred EEEEec-ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCccee-eeccCC
Q psy3053 637 MLVGCW-DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLV-SQLDLD 713 (917)
Q Consensus 637 Lasgs~-Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~-~~~~h~ 713 (917)
+++++. |+.+++|++..++.+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+ .... ....|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-------~~~~~~~~~~~ 242 (466)
T COG2319 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-------KLLRSTLSGHS 242 (466)
T ss_pred EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-------cEEeeecCCCC
Confidence 888885 99999999999999999999999999999999988 5556699999999987633 1222 345566
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCee-eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM-TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
... ...|++++..+++++.|+.+++|++..... .... ..|...+.++.|+|++..+++++.|+.+.+||..+.....
T Consensus 243 ~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 243 DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 654 338999998999999999999999987664 4444 4678999999999988899889999899999998887665
Q ss_pred Eee---cCCceEEEEEeCC-CEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEE-EeCCCeEEEEE
Q psy3053 793 NKV---FEEKLLCLSWAGE-EKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLV-GCWDSCVVIYD 864 (917)
Q Consensus 793 ~~~---~~~~i~~l~~s~~-~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Las-gs~DG~I~Iwd 864 (917)
... +...+..+.+.++ ..++.+ ..++.+.+|+............... +..+ .++ ..++. +..++.+.+|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPD-GRVVSSGSTDGTVRLWD 398 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCC-CCEEEEecCCCceEEEe
Confidence 543 4445888888322 245555 5778999999988873333333322 4555 333 33444 68899999999
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
............+...+....+++++..+++++.++.+++|+...
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 998888877765547899999999999999999999999999876
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-21 Score=213.07 Aligned_cols=240 Identities=18% Similarity=0.251 Sum_probs=215.2
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
+.+..|...|.++..-..++.+++|+.|..+-+|.+.....+.++.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 34567899999999877889999999999999999987777888999999999999999999999999999999999999
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
++.++++.||...+..+.|+|-+.+.++|+.|+.+++||.+.. .+.....+|...|.++.|+|+|+++++|++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-------Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e 174 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-------GCSHTYKSHTRVVDVLRLSPDGRWVASGGE 174 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-------CceeeecCCcceeEEEeecCCCceeeccCC
Confidence 9999999999999999999999999999999999999999754 255556678889999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv 812 (917)
|.++++||+..|+....+. .|.+.+..+.|+|..-.+++|+.|+++++||+++-+.+.... ....+.|.+|++++..+
T Consensus 175 d~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred cceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 9999999999999999998 899999999999999999999999999999999887776544 35679999999998877
Q ss_pred EEeCCCeEE
Q psy3053 813 LGGALGMVY 821 (917)
Q Consensus 813 ~gs~dG~I~ 821 (917)
..+..-.+.
T Consensus 254 ~~G~q~sl~ 262 (825)
T KOG0267|consen 254 LSGEQISLS 262 (825)
T ss_pred ecCchhhhh
Confidence 666554444
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=189.62 Aligned_cols=298 Identities=15% Similarity=0.167 Sum_probs=225.1
Q ss_pred EeccCCceeeeeeccccceEEEEEeCCC--CEEEEEecccEEEEEEeccC----eeeEEeccCCCceeEEEecC-CCCEE
Q psy3053 607 HSLKTGRQERSAVLSSMTLSSLCILPDN--CTMLVGCWDSCVVIYDVECG----RIVTELAGHEDAISCVAWDE-KRKRL 679 (917)
Q Consensus 607 Wd~~t~~~~~~~~~~~~~V~sl~~spd~--~~Lasgs~Dg~I~Iwdl~tg----~~i~~l~~H~~~Vt~l~~sp-d~~~L 679 (917)
.++.+-........+...|++++|+|.. +++|+|..-|.|-+||+.+. .-+..+..|..+|+++.|+| +...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444445556667788899999999964 58899999999999999532 23456778999999999999 45789
Q ss_pred EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe
Q psy3053 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759 (917)
Q Consensus 680 ~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V 759 (917)
++.|.||+|++-|++... ...+...........++.++.+...++.|+.=|...+||++++........-|...|
T Consensus 251 ~ssSyDGtiR~~D~~~~i-----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNI-----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeccCceeeeeeecchh-----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 999999999999998762 112222223445677888999888888988888999999998766333333677899
Q ss_pred EEEEEecC-CCEEEEEeCCCeEEEEECCCCe-----EEEEeecCCceEEEEEeCC-CEEEEEeCCCeEEEEECC----CC
Q psy3053 760 NGVLFSED-GCRVLSCGNNCMLNVYDLTTGM-----QVCNKVFEEKLLCLSWAGE-EKVILGGALGMVYLVDLI----QV 828 (917)
Q Consensus 760 ~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~-----~i~~~~~~~~i~~l~~s~~-~~lv~gs~dG~I~vwdl~----~~ 828 (917)
++++++|. ..++++++.|++.+|||++.-. .+....|...|.+..|+|. +.+++.+.|..|++||.. ..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 99999994 5578999999999999997532 2566778888999999974 569999999999999984 33
Q ss_pred EEEEEEec------CCCceEEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC-CEEEE-EEcCCCCEEEE-EeC
Q psy3053 829 QLLKQVRA------HKDAVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED-AISCV-AWDEKRKRLIS-GNL 898 (917)
Q Consensus 829 ~~i~~l~~------h~~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~-~V~sl-afSpdg~~LaS-gs~ 898 (917)
.+..++.. |-.+..++ .|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++ ++.
T Consensus 406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 34444431 11222232 67888999999989999999999998888654333 56554 89998885555 457
Q ss_pred CCcEEEEecCc
Q psy3053 899 VGAPKLYATEF 909 (917)
Q Consensus 899 DG~V~IWdl~~ 909 (917)
.|.|+||.-+.
T Consensus 486 ~Gki~vft~k~ 496 (498)
T KOG4328|consen 486 SGKIYVFTNKK 496 (498)
T ss_pred cceEEEEecCC
Confidence 78999997654
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=201.14 Aligned_cols=248 Identities=16% Similarity=0.185 Sum_probs=199.3
Q ss_pred ccccceEEEEEeCCCCEEEEEecccEEEEEEeccC-eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 620 LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 620 ~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
.|..+.+.++|.|+|..|++++.||.|++|+..+. .....+..+...|.+++... ++|++|+.+++|.+|....+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~- 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGE- 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCC-
Confidence 57777899999999999999999999999998765 44444544778888888754 699999999999999987762
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
.-.......-++.+++++.+|+++|.|+.|-.|++.++........+. +|.++|.++.|+|++.+||+.+.||
T Consensus 88 ------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 88 ------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred ------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCc
Confidence 111123345689999999999999999999999999999998888888 9999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCce--EEEeecCCEEEEEeC
Q psy3053 779 MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAV--LSLHFDNCTMLVGCW 856 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V--~sis~dg~~Lasgs~ 856 (917)
.|++||+.++.....+..-.+.. +... ...+ .+.+|+|..++..+.
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n----------------------~~~~----------s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDN----------------------EFIL----------SRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred eEEEEEcccchhhhhcccCCccc----------------------cccc----------cceeeeeeecCCCCeEEeecc
Confidence 99999998876543322111000 0000 1111 223678888899999
Q ss_pred CCeEEEEECcCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 857 DSCVVIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 857 DG~I~Iwdl~tg~~l~~l~~--h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
|+.|++|+..++.....+.. +...+..++|||.|+|||+++.||.|.|||+++
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999988877753 445599999999999999999999999999984
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=194.94 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=123.9
Q ss_pred ceeeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccCCceee------eeeccccceEEEEEeCCCCEEEEEeccc
Q psy3053 572 PLHFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKTGRQER------SAVLSSMTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~------~~~~~~~~V~sl~~spd~~~Lasgs~Dg 644 (917)
-+..+.+|.+.|+.+.|+|- ..+|||||.|..|+||.+..|.... .+.+.+..|.++.|+|...-|...+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 45668899999999999994 4588999999999999997443221 1223345678999999877777777889
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC-ceEEEEEeC
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN-RIKCLAISK 723 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~-~V~~l~~sp 723 (917)
+++|||+.+++.+..+.+|.+.|.++.|+.||..|++++.|..|+|+|.+.... ......+|.+ .-..+.|.-
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~------piQ~te~H~~~rdsRv~w~G 224 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME------PIQTTEGHGGMRDSRVLWAG 224 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC------ccccccccccchhheeeecc
Confidence 999999999999999999999999999999999999999999999999876521 1222233432 223455554
Q ss_pred CCCEEEEEECC----CeEEEEECC
Q psy3053 724 DNNQLAVGTEA----GELIIWSLE 743 (917)
Q Consensus 724 dg~~Lasgs~d----G~I~iwDl~ 743 (917)
+-..|++.+-+ ..|++||.+
T Consensus 225 n~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 225 NWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred chhhhhhcccchhhheeeeeeecc
Confidence 43345444332 457777765
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=185.38 Aligned_cols=270 Identities=18% Similarity=0.259 Sum_probs=209.2
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
..+|++...|+|++||..+|+.+..+++|...++.++|.. ....+.+|+.||+|++||++...... ........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----RISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----heeccCCC
Confidence 5788999999999999999999999999999999999976 46789999999999999998763211 11111112
Q ss_pred CCceEEEEEeCCCCEEEEEEC----CCeEEEEECCCCee-eEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC
Q psy3053 713 DNRIKCLAISKDNNQLAVGTE----AGELIIWSLENHLM-TQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~----dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~ 786 (917)
..+..|++.+-.++.+++|+. +..|.+||++..+. +..+...|...|+++.|+| +.+.|++|+.||.+.++|+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 357788888878889998864 67799999998876 7778778999999999999 57799999999999999996
Q ss_pred CCe----EEEEeecCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEEecC-------------CCceEEEee-
Q psy3053 787 TGM----QVCNKVFEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQVRAH-------------KDAVLSLHF- 846 (917)
Q Consensus 787 tg~----~i~~~~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~h-------------~~~V~sis~- 846 (917)
... ....+.+.+.|.++.|.+++ ++.+-+..+...+|++..+.....+... ..-|.+.++
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 542 23455677889999999887 7999999999999999988755444321 112333344
Q ss_pred cCCEEEEEeC-CCeEEEEEC---cC---CeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 847 DNCTMLVGCW-DSCVVIYDV---EC---GRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 847 dg~~Lasgs~-DG~I~Iwdl---~t---g~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++...+.++. -|...++-+ .+ ++.+..+.+ |..-|.++.|...+.++.|||.||.+.+|..+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 4555555554 455555533 33 334556666 66778999999999999999999999999964
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=186.97 Aligned_cols=290 Identities=15% Similarity=0.136 Sum_probs=218.7
Q ss_pred cceeeeccCCcceEEEEEeCCC--cEEEEEecCCceEEEeccCC----ceeeeeeccccceEEEEEeCC-CCEEEEEecc
Q psy3053 571 EPLHFCHSHKEAITAVAICGEG--ISVASVGRDAMLKIHSLKTG----RQERSAVLSSMTLSSLCILPD-NCTMLVGCWD 643 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg--~~Lasgs~Dg~I~IWd~~t~----~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~D 643 (917)
.+....+.|.++|++++|+|.. +.+|+|+..|.|-+||+.+. ..+..+..|..+|+++.|+|. ...+.+.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 4456678899999999999975 58899999999999999532 234556778999999999995 4689999999
Q ss_pred cEEEEEEeccCeeeEEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 644 SCVVIYDVECGRIVTELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
|+|++-|++++.....+. .-......+.|+.+...++.|..=|...+||.++... ......-|...|.++++
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s------~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS------EYENLRLHKKKITSVAL 330 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc------cchhhhhhhcccceeec
Confidence 999999998764433333 2455677888888888888888888999999988732 22234456779999999
Q ss_pred eCCC-CEEEEEECCCeEEEEECCCCeeeE---EecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC----CCeEEEE
Q psy3053 722 SKDN-NQLAVGTEAGELIIWSLENHLMTQ---QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT----TGMQVCN 793 (917)
Q Consensus 722 spdg-~~Lasgs~dG~I~iwDl~~~~~~~---~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~----tg~~i~~ 793 (917)
+|-. .++|+++.|++.+|||++.-.... .....|...|.++.|||.|..|++.+.|..|+|||.. .-.+...
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9965 678999999999999998643222 1122689999999999988889999999999999983 3344455
Q ss_pred eecCCc------eEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCC-ceEEE---eecCCEEEE-EeCCCeEE
Q psy3053 794 KVFEEK------LLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKD-AVLSL---HFDNCTMLV-GCWDSCVV 861 (917)
Q Consensus 794 ~~~~~~------i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-~V~si---s~dg~~Las-gs~DG~I~ 861 (917)
+.|... ..-..|+|+. .+++|..-..|-++|...++.+..+..... .|.++ +|-+..+++ |+..|.|+
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 555432 3346788764 466777778899999999998877654333 55555 676664555 45678899
Q ss_pred EEECc
Q psy3053 862 IYDVE 866 (917)
Q Consensus 862 Iwdl~ 866 (917)
||--+
T Consensus 491 vft~k 495 (498)
T KOG4328|consen 491 VFTNK 495 (498)
T ss_pred EEecC
Confidence 88654
|
|
| >cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-20 Score=164.04 Aligned_cols=92 Identities=27% Similarity=0.480 Sum_probs=82.2
Q ss_pred cceEEEEEEEEEeeeeEeceEEEEecCeEEEEeC------CCCCCceEE--------EEeccccceeeeccccCcceEEE
Q psy3053 156 EKVILETFGNKITPLVVNPGRIVLSSTNLYFQPF------NNIEPHKLL--------KVRLAGIKRIIRRRFLLQQVGIE 221 (917)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~------~~~~~~~~~--------~~~~~~i~~~~~r~~~~~~~~~e 221 (917)
|+++++++|++|+|++++||+|.||+.+|||++. +++++ ++. +|++++|++|++|||+||++|||
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~-~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alE 79 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDD-EVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALE 79 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCc-cceeccccccceeeHHHHHHHHHHhhhcccceEE
Confidence 6899999999999999999999999999999983 44432 444 89999999999999999999999
Q ss_pred EEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 222 IYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 222 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
||+.++ +++||+|.++...++++..+.
T Consensus 80 iF~~d~---~~~f~~F~~~~~~k~vv~~lp 106 (108)
T cd01201 80 LFLASR---TSIFFAFPDQNAVKKVVYALP 106 (108)
T ss_pred EEEeCC---ceEEEEeCcHHHHHHHHhhcC
Confidence 999998 899999999888888877664
|
Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides. |
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=175.15 Aligned_cols=277 Identities=14% Similarity=0.188 Sum_probs=199.0
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC----ceeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG----RQERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iwd 650 (917)
.+|++-|.++.|.+-|+++|||+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 579999999999999999999999999999996433 34566788999999999975 489999999999999997
Q ss_pred ecc------C---eeeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCC--ccCCcce----eeeccCC
Q psy3053 651 VEC------G---RIVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSH--MKPSKSL----VSQLDLD 713 (917)
Q Consensus 651 l~t------g---~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~--~~~~~~~----~~~~~h~ 713 (917)
-.. + ....++....+.|+.++|.|. |-.+|+++.||+++||+.-..... .....++ .....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 621 1 234566677889999999984 678999999999999986543110 0000000 0112356
Q ss_pred CceEEEEEeCC---CCEEEEEECC-----CeEEEEECCCCe----eeEEecCCCCCCeEEEEEecC----CCEEEEEeCC
Q psy3053 714 NRIKCLAISKD---NNQLAVGTEA-----GELIIWSLENHL----MTQQLSDDINASVNGVLFSED----GCRVLSCGNN 777 (917)
Q Consensus 714 ~~V~~l~~spd---g~~Lasgs~d-----G~I~iwDl~~~~----~~~~l~~~h~~~V~~v~fspd----g~~L~s~s~D 777 (917)
.+..|+.|+|. ...||+|+.+ +.+.||....+. .+.++. +|..+|++++|.|+ -..||+++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeecC
Confidence 67889999984 4678888876 578888765432 344455 89999999999995 3478999999
Q ss_pred CeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEe
Q psy3053 778 CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGC 855 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs 855 (917)
| |+||.+....... . .+ .+.+++.-+.+ .-+.+..+.+|.+.|..+.+ .|..|++.|
T Consensus 249 g-v~I~~v~~~~s~i---~----------~e-e~~~~~~~~~l------~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAI---E----------EE-EVLAPDLMTDL------PVEKVSELDDHNGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred c-EEEEEEeeccchh---h----------hh-cccCCCCcccc------ceEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence 9 9999986421100 0 00 11111111111 12456677889999999977 699999999
Q ss_pred CCCeEEEEECc---CCeEEEEec
Q psy3053 856 WDSCVVIYDVE---CGRIVTELA 875 (917)
Q Consensus 856 ~DG~I~Iwdl~---tg~~l~~l~ 875 (917)
.||.|++|... ..++...+.
T Consensus 308 dDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 308 DDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred CCceeeehhhhhhhhheeeeEEe
Confidence 99999999753 233444444
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=179.67 Aligned_cols=274 Identities=18% Similarity=0.267 Sum_probs=206.8
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCC----c--------eeeeee-ccccceEEEEEe-------CCCCEEEEEecc
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTG----R--------QERSAV-LSSMTLSSLCIL-------PDNCTMLVGCWD 643 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~--------~~~~~~-~~~~~V~sl~~s-------pd~~~Lasgs~D 643 (917)
..+.|||||..|++-+.|..+.+|++... . ...++. .....|...+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 35789999999999999999999998521 0 011111 123457777775 677899999999
Q ss_pred cEEEEEEeccCeeeEEecc--CCCc---eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcce-eeeccCCCceE
Q psy3053 644 SCVVIYDVECGRIVTELAG--HEDA---ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL-VSQLDLDNRIK 717 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~--H~~~---Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~-~~~~~h~~~V~ 717 (917)
.-|++||.-+|+....+.+ |.+. ..+++|+|||..|+.| ...+|+++|+............. ....+..+-+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999998877764 5444 4589999999999876 47799999994432211111111 11345577899
Q ss_pred EEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeEEEEee
Q psy3053 718 CLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 718 ~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~~i~~~~ 795 (917)
|++++|-. +.+++|+...++-|+.-..+.++..+. +|.+.|+.+.|.++|+.|.+|+. |..|..||++.-..
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----- 285 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----- 285 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-----
Confidence 99999954 599999999999999988888888887 99999999999999999999875 56788888764321
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC----c-eEEEeecCCEEEEEeCCCeEEEEECcC-Ce
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD----A-VLSLHFDNCTMLVGCWDSCVVIYDVEC-GR 869 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~----~-V~sis~dg~~Lasgs~DG~I~Iwdl~t-g~ 869 (917)
++..+..|.+ . ...+.+++++|++|+.||.|++||+++ |.
T Consensus 286 ----------------------------------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 286 ----------------------------------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ----------------------------------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 1122222221 1 123477899999999999999999988 77
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 870 IVTELAGHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 870 ~l~~l~~h~~~V~slafSpdg~~LaSgs~ 898 (917)
.+..+..|+..|+.++++|--.++||++.
T Consensus 332 ~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 332 EVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cccccccccccccceecCcccceeeeccC
Confidence 78888889999999999998888887764
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=175.09 Aligned_cols=255 Identities=19% Similarity=0.238 Sum_probs=189.8
Q ss_pred eccccceEEEEEeC-CCCEEEEEecccEEEEEEeccCe----------eeE-----EeccCCCceeEEEecC-CCCEEEE
Q psy3053 619 VLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECGR----------IVT-----ELAGHEDAISCVAWDE-KRKRLIS 681 (917)
Q Consensus 619 ~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg~----------~i~-----~l~~H~~~Vt~l~~sp-d~~~L~S 681 (917)
..|.+.|.++.+.+ .|+++++|+.||.|.+||+++.. .+. .-.+|.-.|+.+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34678888888877 68999999999999999997542 111 1236888999999998 6678889
Q ss_pred EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCC
Q psy3053 682 GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758 (917)
Q Consensus 682 gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~ 758 (917)
+|.|.+++|||..+. +....+..++.|.+-+++|- ..++|+|..+-.|++.|+.+|...+.+. +|.+.
T Consensus 120 sSFDhtlKVWDtnTl--------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~ 190 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL--------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDG 190 (397)
T ss_pred ccccceEEEeecccc--------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCc
Confidence 999999999999876 44445667788888888883 4688899999999999999999999998 99999
Q ss_pred eEEEEEecCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE---EEEE
Q psy3053 759 VNGVLFSEDGCR-VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL---LKQV 834 (917)
Q Consensus 759 V~~v~fspdg~~-L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~---i~~l 834 (917)
|.++.|+|...+ |++|+.||.|++||++.. .|..++.|..+++. ++.-
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRra----------------------------sgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRA----------------------------SGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecc----------------------------cceeEEeecccCccCcccccc
Confidence 999999997765 678899999999999743 23344444444332 2234
Q ss_pred ecCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEE-e----------------cCCCCCEEEEEEcCCCCEEEE
Q psy3053 835 RAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTE-L----------------AGHEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 835 ~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~-l----------------~~h~~~V~slafSpdg~~LaS 895 (917)
.+|.+.+..+++ ++.++++.+.|..+++|+..+|+.... + .+|.+.+.-+-.. ++-.|.+
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~ 321 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLN 321 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEE
Confidence 568889988855 899999999999999999887753211 0 1122222211111 3335566
Q ss_pred EeCCCcEEEEecCcce
Q psy3053 896 GNLVGAPKLYATEFYL 911 (917)
Q Consensus 896 gs~DG~V~IWdl~~~l 911 (917)
......|+.|+...+.
T Consensus 322 ~~sgs~ir~l~~h~k~ 337 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLKR 337 (397)
T ss_pred ccCceEEEeeecccce
Confidence 6677788888887543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-19 Score=193.58 Aligned_cols=275 Identities=17% Similarity=0.294 Sum_probs=216.5
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
.|..++|.|||..++.+. +..+.+||...|...+++++|.+.|.|++|+.||+.++||+.|..|.+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-------- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-------- 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc--------
Confidence 788999999999888765 45689999999999999999999999999999999999999999999998532
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
+-.....|.+.|.|+.|+|-...+++++-. ..-+|+......... .....+.+++|..||++++.|-.+|+|.+-
T Consensus 85 -EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 85 -EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred -cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 223356899999999999999999887654 467888765433222 245688999999999999999999999998
Q ss_pred ECCCCeEEEEee----cCCceEEEEEeCC------CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 784 DLTTGMQVCNKV----FEEKLLCLSWAGE------EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 784 Dl~tg~~i~~~~----~~~~i~~l~~s~~------~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
+- +|+....+. ..++|.+++|+|. ..+.+..-..++.++.+. |+.+..-+.-.-...|+ -++|.++
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence 64 343333332 3567999999864 245566666677777663 34333222222233455 5699999
Q ss_pred EEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEEE
Q psy3053 852 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~L 915 (917)
..|+.|+.+.+|. +.|-.+.++......|++++..|++++++.|+.||+|..|++-...+|.+
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~l 300 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGL 300 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhh
Confidence 9999999999996 45888888877888999999999999999999999999999876655543
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-19 Score=181.36 Aligned_cols=314 Identities=14% Similarity=0.153 Sum_probs=217.3
Q ss_pred eeccCCcceEEEEEeC----CCcEEEEEecCCceEEEeccCCc---eeeeee--ccccceEEEEEeCC----CCEEEEEe
Q psy3053 575 FCHSHKEAITAVAICG----EGISVASVGRDAMLKIHSLKTGR---QERSAV--LSSMTLSSLCILPD----NCTMLVGC 641 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSp----dg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~--~~~~~V~sl~~spd----~~~Lasgs 641 (917)
....|+.+|.+++|.+ +...+++......+.+|.....- .+++.. .+......|+|+-| +.++|+|+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3467899999999985 22334444445677888765432 222222 24556777888754 45899999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
.-|.|+|.|+.++++...+.+|..+|+.+.++|+ .+++++||.|.+|++|++.+.... .......+|.+.|.+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv----~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV----AVFGGVEGHRDEVLSVD 188 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE----EEecccccccCcEEEEE
Confidence 9999999999999999999999999999999996 478999999999999999886211 11112457999999999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i 800 (917)
|+++|..+++++.|.++.+|++...+....++ .+..|+|++...-.-. -...+.+.. ..-.|...|
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfpt--~~~~fp~fs-----t~diHrnyV 254 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFPT--PKTHFPDFS-----TTDIHRNYV 254 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCCc--ccccccccc-----ccccccchH
Confidence 99999999999999999999998654433333 1134555443211000 011122211 111244556
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCC-CE-------------EEEEEecCCCceEEE----eecCCEEEEEeCCCeEEE
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQ-VQ-------------LLKQVRAHKDAVLSL----HFDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~-~~-------------~i~~l~~h~~~V~si----s~dg~~Lasgs~DG~I~I 862 (917)
.|+.|-++ .+++-+.++.|..|.... .+ .+.++.-....+.-+ .+-++.||.|...|.|.+
T Consensus 255 DCvrw~gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 255 DCVRWFGD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHHHhh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 67777775 777777777888887621 11 222333333344444 345788999999999999
Q ss_pred EECcCCeEE--EEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 863 YDVECGRIV--TELA--GHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 863 wdl~tg~~l--~~l~--~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
||++...+. .++. .....|...+||.||..|+...+||+|.-||.
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999877652 1222 12457999999999999999999999999985
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=189.32 Aligned_cols=233 Identities=17% Similarity=0.279 Sum_probs=184.6
Q ss_pred CCcEEEEEecCCceEEEeccC----------C-----------ceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEE
Q psy3053 591 EGISVASVGRDAMLKIHSLKT----------G-----------RQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVI 648 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t----------~-----------~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~I 648 (917)
.|+++|.|+.|..|.|||+.- | +.-....+|..+|.+++|... .+.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 368999999999999999752 1 001123357777888888765 468999999999999
Q ss_pred EEeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-C
Q psy3053 649 YDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-N 726 (917)
Q Consensus 649 wdl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~ 726 (917)
||+.+|++..++..|.+.|.++.|+| ....|++||.|++|.+.|++.. ..........+.|-.++|.|.. .
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-------~~s~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-------SNSGKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-------cccCceEEeccceEEEEecCCCce
Confidence 99999999999999999999999998 4678999999999999999853 1222334567889999999965 6
Q ss_pred EEEEEECCCeEEEEECCCC-eeeEEecCCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceE
Q psy3053 727 QLAVGTEAGELIIWSLENH-LMTQQLSDDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLL 801 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~-~~~~~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~ 801 (917)
.+++++.||+++-+|+++. +++.++. .|.++|.++++++. ...+++++.|+.+++|++..........+ -+...
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~ 422 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH 422 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccccccee
Confidence 7788899999999999976 8888888 99999999999984 45788999999999999865443222222 13366
Q ss_pred EEEEeCC--CEEEEEeCCCeEEEEECCCCEEE
Q psy3053 802 CLSWAGE--EKVILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 802 ~l~~s~~--~~lv~gs~dG~I~vwdl~~~~~i 831 (917)
|++..++ ..+++|+..+.+++||+.+...+
T Consensus 423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecccCCCcceEEEecCccceEEEeecccChhH
Confidence 6777664 56888888889999998776544
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-19 Score=200.77 Aligned_cols=238 Identities=12% Similarity=0.169 Sum_probs=191.6
Q ss_pred EEEEEeC-CCcEEEEEecCCceEEEeccC---CceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccCeeeE
Q psy3053 584 TAVAICG-EGISVASVGRDAMLKIHSLKT---GRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 584 tsv~fSp-dg~~Lasgs~Dg~I~IWd~~t---~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
..|.|.. +.++|||++..|.|.+||+.. .+++..+..|...+.++.|++. ..+|++|+.||+|++||++..+...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3455653 457999999999999999976 5566778889999999999985 5689999999999999999999999
Q ss_pred EeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 659 ELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
++.+....|..++|+| .+..++++...|.+++||++.. .........|.++|.|+.|+|++.+||+|+.|+.|
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCc------hhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 9999999999999998 5778999999999999999764 34555677899999999999999999999999999
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEecCCCE-EEEEe--CCCeEEEEECCCCeEE-E-EeecCCceEEEEEeC--CCE
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSEDGCR-VLSCG--NNCMLNVYDLTTGMQV-C-NKVFEEKLLCLSWAG--EEK 810 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~-L~s~s--~Dg~I~iwDl~tg~~i-~-~~~~~~~i~~l~~s~--~~~ 810 (917)
+|||+.+++.-.........+|..|+|-|+..+ |++++ .|-.|+|||++..-.- . ...|...++.++|.. ...
T Consensus 245 kiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRIN 324 (839)
T ss_pred EEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCcee
Confidence 999998765443333235678999999997654 55554 4778999999765322 2 234666788899976 335
Q ss_pred EEEEeCCCeEEEEECCC
Q psy3053 811 VILGGALGMVYLVDLIQ 827 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~ 827 (917)
+.+++.||.|..-..++
T Consensus 325 l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 325 LWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eEeecCccHHHHhhhhc
Confidence 77888888776554443
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=178.76 Aligned_cols=206 Identities=18% Similarity=0.290 Sum_probs=169.7
Q ss_pred eccCCcceEEEEEeCCCc--EEEEEecCCceEEEeccC----------------CceeeeeeccccceEEEEEeCC-CCE
Q psy3053 576 CHSHKEAITAVAICGEGI--SVASVGRDAMLKIHSLKT----------------GRQERSAVLSSMTLSSLCILPD-NCT 636 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~--~Lasgs~Dg~I~IWd~~t----------------~~~~~~~~~~~~~V~sl~~spd-~~~ 636 (917)
.-+|.+.|..+..++-|+ +.++-+..|.|.||++.. .+.+.++.+|...-..++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 357888888888888664 556667889999999742 2456677788888899999993 335
Q ss_pred EEEEecccEEEEEEeccCeee---EEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 637 MLVGCWDSCVVIYDVECGRIV---TELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg~~i---~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
+++|..-+.|++|...+|.-. ..+.+|+..|-.++|||. ...++|||.||+|+|||++.+ +.........|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~-----~~~~~~~~kAh 301 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG-----PKKAAVSTKAH 301 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC-----CccceeEeecc
Confidence 888888899999999887542 346789999999999995 568999999999999999886 22334445789
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCC---CeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCC
Q psy3053 713 DNRIKCLAISKDNNQLAVGTEAGELIIWSLEN---HLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~---~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~t 787 (917)
.+.|..++|+....+||+|+.||++.|||+++ ++++..+. .|..+|+++.|+| +...+++++.|..|.+||+..
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999999988999999999999999985 45677777 8999999999999 456788899999999999853
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=184.07 Aligned_cols=262 Identities=16% Similarity=0.251 Sum_probs=208.2
Q ss_pred ceEEEEEeCCCcE-EEEEecCCceEEEeccCC--ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 582 AITAVAICGEGIS-VASVGRDAMLKIHSLKTG--RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 582 ~Vtsv~fSpdg~~-Lasgs~Dg~I~IWd~~t~--~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
.|.++.|+....+ +++.+.|..|++|.-... +....-......-.|++......++++|+..+.|+|||+....+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 4889999887742 334456888999975432 1222111222233455545556899999999999999999888888
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC-EEEEEECCCeE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN-QLAVGTEAGEL 737 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs~dG~I 737 (917)
.+++|.+.|+++.+.....+||+++..|.|.|..+.++.. ...-..+....|.-+.+++..+ +|.+++.+|.|
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc------ccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 9999999999999999999999999999999999887621 1111122345567899999765 56678999999
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEe
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGG 815 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs 815 (917)
.+||+....+.......|..+...++|+| +..++++.+.|..|.+||.........+....+...+++.++|. +++|.
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 99999998888888778999999999999 55678899999999999999888888888999999999999886 55677
Q ss_pred CCCeEEEEECCCC-EEEEEEecCCCceEEEeecCC
Q psy3053 816 ALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHFDNC 849 (917)
Q Consensus 816 ~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~dg~ 849 (917)
..|.|..||++.. .++..+..|...|++++|...
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 8899999999865 578888999999999977543
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=179.10 Aligned_cols=279 Identities=15% Similarity=0.234 Sum_probs=204.9
Q ss_pred EEEEeCCCCEEEEEeccc-----EEEEEEeccCeeeEEeccCC----CceeEEEecC-------CCCEEEEEECCCeEEE
Q psy3053 627 SLCILPDNCTMLVGCWDS-----CVVIYDVECGRIVTELAGHE----DAISCVAWDE-------KRKRLISGSWDCTVRV 690 (917)
Q Consensus 627 sl~~spd~~~Lasgs~Dg-----~I~Iwdl~tg~~i~~l~~H~----~~Vt~l~~sp-------d~~~L~Sgs~DgtI~v 690 (917)
.+.+-|++++|++|-.+. .|+||+-.... -+..|. ..-.|++|.. .|+++|.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 445667777887775432 24555433211 111122 2235666642 3689999999999999
Q ss_pred EeCCCCCCCcc--------------CCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCC
Q psy3053 691 WNTGASWSHMK--------------PSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDI 755 (917)
Q Consensus 691 Wdl~~~~~~~~--------------~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h 755 (917)
||+.-...... ..+......+|.+.|..++|+..- +.||+|+.|.+|++||+.++++...+. .|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hc
Confidence 99754321000 001111234688888899998754 688999999999999999999999998 89
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCceEEEEEeCC--CEEEEEeCCCeEEEEECCCC-EE
Q psy3053 756 NASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEKLLCLSWAGE--EKVILGGALGMVYLVDLIQV-QL 830 (917)
Q Consensus 756 ~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~~~~~i~~l~~s~~--~~lv~gs~dG~I~vwdl~~~-~~ 830 (917)
.+.|.++.|+| ....|++|+.|+++.+.|++. +..-......+.+-.++|++. ..+++++.||.|+-+|+++. ++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 99999999999 577899999999999999984 233345667888999999864 46889999999999999876 89
Q ss_pred EEEEecCCCceEEEee---cCCEEEEEeCCCeEEEEECcCCeE--EEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q psy3053 831 LKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVECGRI--VTELAGHEDAISCVAWDEKRK-RLISGNLVGAPKL 904 (917)
Q Consensus 831 i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~tg~~--l~~l~~h~~~V~slafSpdg~-~LaSgs~DG~V~I 904 (917)
+.++.+|.+.|.+++. ...++++++.|+.|++|++..... +..-.-.-+...|.++.|+-. .+|.||..+.++|
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 9999999999999966 456799999999999999864433 222111123466777777654 5777888889999
Q ss_pred EecCc
Q psy3053 905 YATEF 909 (917)
Q Consensus 905 Wdl~~ 909 (917)
||+-.
T Consensus 446 wd~~~ 450 (463)
T KOG0270|consen 446 WDIFT 450 (463)
T ss_pred eeccc
Confidence 99864
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=181.39 Aligned_cols=285 Identities=13% Similarity=0.138 Sum_probs=214.3
Q ss_pred EecCCceEEEeccCCceeeeeec--cccceEEEEEeCCCCEEEE--EecccEEEEEEeccC--eeeEEeccCCCceeEEE
Q psy3053 598 VGRDAMLKIHSLKTGRQERSAVL--SSMTLSSLCILPDNCTMLV--GCWDSCVVIYDVECG--RIVTELAGHEDAISCVA 671 (917)
Q Consensus 598 gs~Dg~I~IWd~~t~~~~~~~~~--~~~~V~sl~~spd~~~Las--gs~Dg~I~Iwdl~tg--~~i~~l~~H~~~Vt~l~ 671 (917)
++....+++||.........+.. ....+.+++|..... |++ .+.|..+++|.-... +....-....+.-.|++
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 34445789999876544333322 233488899987664 444 355788999975422 22222122223455666
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe
Q psy3053 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL 751 (917)
Q Consensus 672 ~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l 751 (917)
......++++|+..++|+|||+... .......+|.+.|+++.++-...+||+++..|.|.+..+.++.....+
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 6556689999999999999999754 233446789999999999999999999999999999999999888888
Q ss_pred cCCCCCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCeEEEE--eecCCceEEEEEeCCC--EEEEEeCCCeEEEEECC
Q psy3053 752 SDDINASVNGVLFSEDGCR-VLSCGNNCMLNVYDLTTGMQVCN--KVFEEKLLCLSWAGEE--KVILGGALGMVYLVDLI 826 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~-L~s~s~Dg~I~iwDl~tg~~i~~--~~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~ 826 (917)
..+....|.-+.|+|..+. |.+++.+|.|.+||+....++.. ..|..+...++++|.+ .+++.+.|..|.+||..
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 7555677889999997665 55788899999999987766654 3466777778887643 57788999999999999
Q ss_pred CCEEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECcC-CeEEEEecCCCCCEEEEEEcCCC
Q psy3053 827 QVQLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 827 ~~~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~t-g~~l~~l~~h~~~V~slafSpdg 890 (917)
..+....+.. |.-...++.++|.+|++|...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 8777666642 3333344477999999999999999999975 45788999999999999998764
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=175.11 Aligned_cols=306 Identities=17% Similarity=0.197 Sum_probs=209.7
Q ss_pred CcceEEEEEeCCCc-EEEEEecCCceEEEeccCCce---------eeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 580 KEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQ---------ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~---------~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
..+|.++.|.+++. .++||+.|..|++|.+..+.. +..+..|..+|+++.|+|+|..+|+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45788999998876 999999999999999864322 34567799999999999999999999999999999
Q ss_pred Eec--------c--------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 650 DVE--------C--------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 650 dl~--------t--------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
... + ......+.+|.+.|..++|+|++.++++|+.|.++++||+..+ .......+|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-------~l~~~~~dh~ 165 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-------QLLAILDDHE 165 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-------eeEeeccccc
Confidence 876 2 1234567789999999999999999999999999999999887 3445567899
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec---------CC---------CC----CCeEEEEEecCCCEE
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS---------DD---------IN----ASVNGVLFSEDGCRV 771 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~---------~~---------h~----~~V~~v~fspdg~~L 771 (917)
..+..++|.|-++++++-+.|...+.+++...+.+.... .. |. .-...++|+|+|..+
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 999999999999999998888877777665443322221 00 11 123457788888888
Q ss_pred EEEeC----CCe-----EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceE
Q psy3053 772 LSCGN----NCM-----LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL 842 (917)
Q Consensus 772 ~s~s~----Dg~-----I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~ 842 (917)
++.+. ++. .++++-. ....++.++-.-..-.+++.+.- ..+ ++..-...-.
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk--------~l~rP~~~lp~~~k~~lavr~~p---Vy~---------elrp~~~~~~ 305 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRK--------DLKRPAARLPSPKKPALAVRFSP---VYY---------ELRPLSSEKF 305 (434)
T ss_pred EcccceeeeCCceeeceeEeeccc--------cccCceeecCCCCcceEEEEeee---eEE---------Eecccccccc
Confidence 87532 111 1111111 00011111100011111111110 011 1111100000
Q ss_pred EE-eecCCEEEEEeCCCeEEEEECcCCeEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEE
Q psy3053 843 SL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLY 913 (917)
Q Consensus 843 si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~-~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~ 913 (917)
-+ -|-+-.+|.++. ..|.+||.++..++.... -|-.+|+.++|++||..|+..|.||...+-.++...+.
T Consensus 306 ~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 306 LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 11 223444555655 469999999988877664 48889999999999999999999999988888766544
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=206.87 Aligned_cols=283 Identities=16% Similarity=0.256 Sum_probs=217.2
Q ss_pred EEEEeCCCC-EEEEE----------ecccEEEEEEecc--Ce----eeEEeccCCCceeEEEecCCCCE----EEEEECC
Q psy3053 627 SLCILPDNC-TMLVG----------CWDSCVVIYDVEC--GR----IVTELAGHEDAISCVAWDEKRKR----LISGSWD 685 (917)
Q Consensus 627 sl~~spd~~-~Lasg----------s~Dg~I~Iwdl~t--g~----~i~~l~~H~~~Vt~l~~spd~~~----L~Sgs~D 685 (917)
..+|+|++. ++|+| +.+.++-||.++. .. .+..+. -...-..++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888775 44444 3345566665542 22 222222 3346788999886665 8899999
Q ss_pred CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC-EEEEEECCCeEEEEECCCCeeeEEe-cCCCCCCeEEEE
Q psy3053 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN-QLAVGTEAGELIIWSLENHLMTQQL-SDDINASVNGVL 763 (917)
Q Consensus 686 gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l-~~~h~~~V~~v~ 763 (917)
|.|.+||...-. .......+.....|.+.|..+.|++... ++|+|+.||.|.|||+.+.+..... .....+.|.+++
T Consensus 90 G~I~ly~p~~~~-~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 90 GNIVLYDPASII-ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CceEEecchhhc-cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999986530 1111223445668999999999999765 9999999999999999886554444 223567899999
Q ss_pred EecC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCc---eEEEEEeCCC--EEEEEeCC---CeEEEEECCCC-EEEEE
Q psy3053 764 FSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK---LLCLSWAGEE--KVILGGAL---GMVYLVDLIQV-QLLKQ 833 (917)
Q Consensus 764 fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~---i~~l~~s~~~--~lv~gs~d---G~I~vwdl~~~-~~i~~ 833 (917)
|+.. ...|++++.+|.+.|||++..+.+..+..... +..++|+|++ .+++++.| -.|.+||++.. .+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9984 45678888899999999998877766554433 7789999874 46666655 47999999864 57788
Q ss_pred EecCCCceEEEee---cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCc
Q psy3053 834 VRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 834 l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~-~LaSgs~DG~V~IWdl~~ 909 (917)
+.+|...|.+++| |..++++++.|+.|.+|+.++++.+..+....+.+..+.|+|... .++.++-||.|.|+.+.+
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 8999999999977 668999999999999999999999999998889999999999766 778889999999999976
Q ss_pred ce
Q psy3053 910 YL 911 (917)
Q Consensus 910 ~l 911 (917)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 53
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-18 Score=187.13 Aligned_cols=255 Identities=15% Similarity=0.200 Sum_probs=189.6
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee--eeccccceEEEEEeCCC-CEEEEEecccEEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS--AVLSSMTLSSLCILPDN-CTMLVGCWDSCVVIYD 650 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~--~~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwd 650 (917)
.....|.+.|..+.|.|....|++++.|.++++||+++++.... ..+|...|.++||.|++ ..+++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 45678999999999999767899999999999999999888766 88999999999999965 5788899999999999
Q ss_pred eccCee---------------------------eEEeccCCCceeE---EEecCCCCEEEEEEC-CCeEEEEeCCCCCCC
Q psy3053 651 VECGRI---------------------------VTELAGHEDAISC---VAWDEKRKRLISGSW-DCTVRVWNTGASWSH 699 (917)
Q Consensus 651 l~tg~~---------------------------i~~l~~H~~~Vt~---l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~ 699 (917)
+..... +....+|...|.+ +.+..|...||++|. |+.|+|||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 864220 1111234444554 555568889999988 999999999887533
Q ss_pred ccCCcc-eeeeccC---CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee--eEEecCCCCC-CeEEEEEecCCCEEE
Q psy3053 700 MKPSKS-LVSQLDL---DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM--TQQLSDDINA-SVNGVLFSEDGCRVL 772 (917)
Q Consensus 700 ~~~~~~-~~~~~~h---~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~-~V~~v~fspdg~~L~ 772 (917)
...... ......+ .-.++++.....|.++.+.+.|+.|+.|++.+... +..+.+.... .-..-..+|++.+++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 322111 1111122 34578888888899999999999999999986432 2222211111 112234689999999
Q ss_pred EEeCCCeEEEEECCCCeEE--EEeecCCceEEEEEeCC--CEEEEEeCCCeEEEEECCCC
Q psy3053 773 SCGNNCMLNVYDLTTGMQV--CNKVFEEKLLCLSWAGE--EKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i--~~~~~~~~i~~l~~s~~--~~lv~gs~dG~I~vwdl~~~ 828 (917)
+|+.|...++|.+.+.+.- ....+...+++++|.+. ..+++++.|..+++|++.++
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999998776433 23445667899999764 46888999999999999654
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-18 Score=170.95 Aligned_cols=294 Identities=15% Similarity=0.190 Sum_probs=198.3
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-ccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-LSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
.|...+++|.+.|+++.|..++. |.+|..-|.|++|++.+.+....+. .+...|+.+...|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 46778889999999999999886 8899999999999999988888787 56778888888887 577888999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC-eEEEEeCCCCCC------CccCCc--ceeeeccCCCceEEEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC-TVRVWNTGASWS------HMKPSK--SLVSQLDLDNRIKCLA 720 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg-tI~vWdl~~~~~------~~~~~~--~~~~~~~h~~~V~~l~ 720 (917)
++..+..+. -|.-.+.++.|++. -+...+... ..-.++-+.... ...... ......+..+.+.|..
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrf--Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRF--SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred EccCcceEE---Eeeeeccccccccc--eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 998765443 24445556666541 122211111 111111111100 000000 0001123345677776
Q ss_pred EeCC-C--CEEEEEECCCeEEEEECCCCeeeEEec---------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 721 ISKD-N--NQLAVGTEAGELIIWSLENHLMTQQLS---------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 721 ~spd-g--~~Lasgs~dG~I~iwDl~~~~~~~~l~---------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
+..+ + -++++|.++|.+.+||+.++..+..+. ..|..+|.++.+.+....=++++.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 5442 2 356788899999999999985444333 146667777777654444445555555555554321
Q ss_pred eEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE--EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECc
Q psy3053 789 MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ--LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 789 ~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
. .... ...+++.....-..|.+|++.+|+++.||.|+||+.+
T Consensus 238 ~------------------------------------gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 238 T------------------------------------GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred c------------------------------------CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 0 0000 0112222222234568899999999999999999999
Q ss_pred CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 867 CGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 867 tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+.+++..++-|++.|.+++|+|+...+|+++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999986
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=177.48 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=199.7
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC-EEEEEECCCeEEEEEC
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN-QLAVGTEAGELIIWSL 742 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs~dG~I~iwDl 742 (917)
.+.|+++.|+|....|++|+.||++++|.++.... ..+....-...+|.+.+|.|+|. .+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 46899999999999999999999999999876521 23333344567899999999998 8899999999999999
Q ss_pred CCCeeeEEecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCe
Q psy3053 743 ENHLMTQQLSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGM 819 (917)
Q Consensus 743 ~~~~~~~~l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~ 819 (917)
.+.+....-.. .....+....+++++++|+..|..|.|.+....+++.+..+..++.+..++|+.++. +++.+.+|.
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCce
Confidence 98765443321 123467788899999999999999999999999999999999999999999986654 778888999
Q ss_pred EEEEECCCCEEEEEEecC---CCceEEEeecCCEEEEEeCCCeEEEEECc------CCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 820 VYLVDLIQVQLLKQVRAH---KDAVLSLHFDNCTMLVGCWDSCVVIYDVE------CGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h---~~~V~sis~dg~~Lasgs~DG~I~Iwdl~------tg~~l~~l~~h~~~V~slafSpdg 890 (917)
|++||++...+++.+... .+.-.|++.+|.++|+|+..|.|.|||.. +.+++..+..-...|++++|++|+
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 999999999999888632 23445668899999999999999999964 345677777777899999999999
Q ss_pred CEEEEEe--CCCcEEEEecCcce
Q psy3053 891 KRLISGN--LVGAPKLYATEFYL 911 (917)
Q Consensus 891 ~~LaSgs--~DG~V~IWdl~~~l 911 (917)
+.||.+| .+..+++-.+....
T Consensus 448 qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred hhhhhhhhccccceEEEecccee
Confidence 9988765 56678777665543
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-19 Score=200.70 Aligned_cols=285 Identities=17% Similarity=0.237 Sum_probs=222.3
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+.+..+.+|..+|.|+.|...|.++++|+.|..++||+.+++.++.+..+|.+.++.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.++.++..+.||+++|++++|+|-. +.+.||++++||.+-......+. . ........+.++.+...+..+++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~pr-p--~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPR-P--LKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCC-C--CCcccccceeeeecccccccccc
Confidence 99999999999999999999999943 77899999999987221111111 1 11223355677777777888888
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
|+.|+.-..|.... ++|...+-.+++.+.|-. ..
T Consensus 334 gs~d~ea~n~e~~~-----------------l~~~~~~lif~t~ssd~~-----------------------------~~ 367 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQ-----------------LAWRSNLLIFVTRSSDLS-----------------------------SI 367 (1113)
T ss_pred ccCCcccccchhhH-----------------hhhhccceEEEecccccc-----------------------------cc
Confidence 88887666554321 222222222222222110 14
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS 887 (917)
.+++-.+-.+.+|++.+|...+.+.+|...+..+ +| +.+...+++.||+..|||+-.|.+++........+...+||
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFS 447 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFS 447 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccC
Confidence 4455556678888888888888888888887777 44 77888899999999999999998877664445667778999
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q psy3053 888 EKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~ 908 (917)
+||..++....-|.+.|....
T Consensus 448 qdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 448 QDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred CCCceEecCCCCCceEEeccC
Confidence 999999988888999888764
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-16 Score=178.55 Aligned_cols=326 Identities=16% Similarity=0.206 Sum_probs=232.9
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCC---CEEEEEecccEEEEEEecc
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN---CTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~---~~Lasgs~Dg~I~Iwdl~t 653 (917)
.|-...-..-.||+|++.++... +..|.||...+|.++..+..|..++.++.+.|.. .++.+++.||.|++||...
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 33333333456899998877654 6789999999999999999999999999998754 4677899999999999876
Q ss_pred CeeeEEec------------------------------------------------------------------------
Q psy3053 654 GRIVTELA------------------------------------------------------------------------ 661 (917)
Q Consensus 654 g~~i~~l~------------------------------------------------------------------------ 661 (917)
+.+++++.
T Consensus 92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 64433211
Q ss_pred -------------------------------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec
Q psy3053 662 -------------------------------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL 710 (917)
Q Consensus 662 -------------------------------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~ 710 (917)
.|.-.++|.++||+++++|+|..||.|.+|.--.. ...........
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---~~~~~t~t~lH 248 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---SDDSETCTLLH 248 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc---ccccccceEEE
Confidence 25556789999999999999999999999974331 01122333455
Q ss_pred cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
-|..+|.+++|+++|.+|.+|+..|.+.+|.+.+++ +++.+...++|..+.+|||+...+....|+.|.+....+...
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 688899999999999999999999999999999988 455546789999999999999999999999999987754332
Q ss_pred EEEeec------------CCceEEEEEeC-CCEEEEEeCCCeEEEEECCCCEEEEEE-----------------------
Q psy3053 791 VCNKVF------------EEKLLCLSWAG-EEKVILGGALGMVYLVDLIQVQLLKQV----------------------- 834 (917)
Q Consensus 791 i~~~~~------------~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~~i~~l----------------------- 834 (917)
...+.. .+-.+.++.+| .+.++..+..|.|.+||+.+.+.+..+
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 222111 11134455555 345556666666666666442221111
Q ss_pred ---------------------------------------------ecCCCceE--EE-ee-cCCEEEEEeCCCeEEEEEC
Q psy3053 835 ---------------------------------------------RAHKDAVL--SL-HF-DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 835 ---------------------------------------------~~h~~~V~--si-s~-dg~~Lasgs~DG~I~Iwdl 865 (917)
..|...+. ++ .+ .....++++.||.+++|-+
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence 12332222 22 11 2237889999999999987
Q ss_pred cCC----------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 866 ECG----------RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 866 ~tg----------~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
... .+...-.-|..++++++|+.|| .+++.+.|++|.+||...
T Consensus 487 ~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 487 TDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ecccccCcCccceEEeeeeccccCcccchhhcCCC-cEEEEecCCEEEEecCCC
Confidence 322 1222222378899999999999 555567788999999876
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-17 Score=180.04 Aligned_cols=269 Identities=19% Similarity=0.300 Sum_probs=213.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
.|..++|-|||..|+.+. +..+.+||..+|...+++++|...|.+++|+.||+.+|+|+.|..|.+|+-.-...++ .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 799999999999887765 4578999999999999999999999999999999999999999999999865322211 2
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
.|.+.|.|+.|+|-...|+|++-. ..-+|..... ..........+.+++|..||++++.|-.+|+|.+-+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK---------~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK---------SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhh---------hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 599999999999999999998854 4567876543 112233456789999999999999999999999986
Q ss_pred CCCCeeeE-EecCCCCCCeEEEEEecCC-----CEEEEEeCCCeEEEEECCCCeEEE-EeecCCceEEEEEeCCC-EEEE
Q psy3053 742 LENHLMTQ-QLSDDINASVNGVLFSEDG-----CRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKLLCLSWAGEE-KVIL 813 (917)
Q Consensus 742 l~~~~~~~-~l~~~h~~~V~~v~fspdg-----~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i~~l~~s~~~-~lv~ 813 (917)
-....... ...++.+.+|.+++|+|.. ..+++.....++..+.+. |+.+. .....-...|+++-++| +++.
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 54332222 2233567899999999953 467888888888888875 44443 45556667788877654 6789
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
|+.++.+.+|.. .|-.+.++......|+++ .|++++++.|+.||+|-.|++
T Consensus 240 GGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 999999999864 566666666677788887 789999999999999999875
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=168.08 Aligned_cols=313 Identities=16% Similarity=0.131 Sum_probs=221.5
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC------Cceeeeeec-cccceEEEEEeCCCCEEEEEecccEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT------GRQERSAVL-SSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t------~~~~~~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
.-+.+|.+.|.++.||.++++|++|+.|..+++|+++. .+++..... |...|.|++|...++.+.+|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34678999999999999999999999999999999863 233333332 44789999999999999999999999
Q ss_pred EEEEeccCeeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 647 VIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
...|+++.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+.... ...+............+.|+|.
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~----~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN----PISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC----CCceeeecCCCccceeeeecCC
Confidence 9999999887776642 235899999999999999999999999999977521 1223333445667788999996
Q ss_pred C-CEEEEEECCCeEEEEECCCCeee-EEec--CC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE-EEEeec
Q psy3053 725 N-NQLAVGTEAGELIIWSLENHLMT-QQLS--DD---INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ-VCNKVF 796 (917)
Q Consensus 725 g-~~Lasgs~dG~I~iwDl~~~~~~-~~l~--~~---h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~-i~~~~~ 796 (917)
. .+|++++..|-+.+||.+..... .+.. .+ ......++.|+|+|..+++.-....-.+||+.+..+ +....+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 5 67788888899999998864321 1111 01 122346788999999998877766677788766432 333332
Q ss_pred CC-------ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 797 EE-------KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 797 ~~-------~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
.. .+.+++|.++..+++|+.+-.|++|.+..... ....+.|-.+..-+ -..|.| .+
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d-------s~G~~~IG~~~~~~-----~~~~~i-----~~ 348 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND-------SYGFTQIGHDEEEM-----PSEIFI-----EK 348 (609)
T ss_pred CCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc-------ccCccccCcchhhC-----chhhee-----cc
Confidence 21 24556666665677777777777776643211 11111110000000 000111 23
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 870 IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 870 ~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
.+..++||...+..+.|+|...+|++.|....+++|.-
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 35568899999999999999999999999999999974
|
|
| >PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=158.22 Aligned_cols=91 Identities=32% Similarity=0.615 Sum_probs=76.8
Q ss_pred ceEEEEEEEEEeeeeEeceEEEEecCeEEEEeC--------------CCCCCceEEEEeccccceeeeccccCcceEEEE
Q psy3053 157 KVILETFGNKITPLVVNPGRIVLSSTNLYFQPF--------------NNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEI 222 (917)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~--------------~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~ 222 (917)
+|.++.+|++|+|+...+|.|.||+++|||++. ...+..+..+|++++|++|++|||+||++||||
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEi 80 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEI 80 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEE
Confidence 467899999999999999999999999999986 223456788999999999999999999999999
Q ss_pred EEecCCCceeEEEecCChhhHHHHHHHH
Q psy3053 223 YFKDLEPVKYLYLTLKTQGARDTLYNAL 250 (917)
Q Consensus 223 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 250 (917)
|+.+| +++||+|.++++|++++++|
T Consensus 81 F~~dg---~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 81 FFSDG---RSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EETTS----EEEEE-SSHHHHHHHHCCS
T ss_pred EEcCC---cEEEEEcCCHHHHHHHHHhh
Confidence 99998 89999999999999999765
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=167.41 Aligned_cols=246 Identities=19% Similarity=0.255 Sum_probs=187.5
Q ss_pred EeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCC---------CCccCCcceeeeccCCCceEEEEEeCCC-C
Q psy3053 659 ELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASW---------SHMKPSKSLVSQLDLDNRIKCLAISKDN-N 726 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~---------~~~~~~~~~~~~~~h~~~V~~l~~spdg-~ 726 (917)
...+|.+.+..+.-++- ..+.++-+..|.|.||++...- .......++....+|...=..++|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34467788887777664 4566677788999999986432 1112334566677888889999999933 4
Q ss_pred EEEEEECCCeEEEEECCCCeeeE---EecCCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCC---eEEEEeecCCc
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQ---QLSDDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTG---MQVCNKVFEEK 799 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~---~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg---~~i~~~~~~~~ 799 (917)
.+++|..-+.|++|...++.-.. .+. +|...|..++|||. ...+++|+.||+|+|||++.+ ..+....+.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 58888888999999988864322 222 68999999999994 568999999999999999998 56677888999
Q ss_pred eEEEEEeCCC-EEEEEeCCCeEEEEECCC---CEEEEEEecCCCceEEEee---cCCEEEEEeCCCeEEEEECcCCeE--
Q psy3053 800 LLCLSWAGEE-KVILGGALGMVYLVDLIQ---VQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVECGRI-- 870 (917)
Q Consensus 800 i~~l~~s~~~-~lv~gs~dG~I~vwdl~~---~~~i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~tg~~-- 870 (917)
|+.++|+... .+++|+.+|++.+||+++ ++++..++-|..+|+++.| +...|++++.|..|.+||+....-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 9999999654 588899999999999986 5688999999999999966 477899999999999999852211
Q ss_pred ---------E-----EEecCC--CCCEEEEEEcCCC-CEEEEEeCCCcEEEEe
Q psy3053 871 ---------V-----TELAGH--EDAISCVAWDEKR-KRLISGNLVGAPKLYA 906 (917)
Q Consensus 871 ---------l-----~~l~~h--~~~V~slafSpdg-~~LaSgs~DG~V~IWd 906 (917)
+ +.+--| ...|..+.|++.- .+|++.+.|| +.||.
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 0 111123 3468889999853 5788888888 44553
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-17 Score=175.33 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=166.7
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-ccccceEEEEEeC--CCCEEEEEecccEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-LSSMTLSSLCILP--DNCTMLVGCWDSCV 646 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-~~~~~V~sl~~sp--d~~~Lasgs~Dg~I 646 (917)
+.....+.||++.|.|++|+.+|.+|++||.|-.+.|||.-..+.+..+. +|...|.++.|.| +++.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 44557789999999999999999999999999999999998888777764 6889999999998 46789999999999
Q ss_pred EEEEeccC----------eeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCcc---CCcceeeeccC
Q psy3053 647 VIYDVECG----------RIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMK---PSKSLVSQLDL 712 (917)
Q Consensus 647 ~Iwdl~tg----------~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~---~~~~~~~~~~h 712 (917)
+++|+... .....+..|.+.|..++-.|++ +.+.+++.||+++-+|++....... ....+......
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999852 2344566799999999999988 7899999999999999987421110 00111111222
Q ss_pred CCceEEEEEeCCC-CEEEEEECCCeEEEEECCCC------------------eeeEEecCCCC-----------CCeEEE
Q psy3053 713 DNRIKCLAISKDN-NQLAVGTEAGELIIWSLENH------------------LMTQQLSDDIN-----------ASVNGV 762 (917)
Q Consensus 713 ~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~------------------~~~~~l~~~h~-----------~~V~~v 762 (917)
--...|++++|.. .+|++|+.|-..++||.+.. .++..+..+|. ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 2457899999964 78899999999999994311 12333332222 125668
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 763 LFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 763 ~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
+|+|+|.-|++.-....|+++|+..++
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 899999988887777789999986543
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-17 Score=177.55 Aligned_cols=268 Identities=16% Similarity=0.182 Sum_probs=200.8
Q ss_pred eeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC--EEEEEECCCeEEEEeCC
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK--RLISGSWDCTVRVWNTG 694 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~--~L~Sgs~DgtI~vWdl~ 694 (917)
.+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|+++.++. ..+.|.|++|+|.+. .||++ .+..+.+-+..
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~ 472 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPI 472 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceEEeCcc
Confidence 356788999999999999999999999999999999999999886 556899999999765 34444 34446666543
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE----ECCCeEEEEECCCCee----eEEecCCCCCCeEEEEEec
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG----TEAGELIIWSLENHLM----TQQLSDDINASVNGVLFSE 766 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg----s~dG~I~iwDl~~~~~----~~~l~~~h~~~V~~v~fsp 766 (917)
-+..... -+....++++ ..++.+..|.-..... +.... .|...|..+.|+.
T Consensus 473 ~G~~~e~--------------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 473 FGDRLEV--------------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHR 531 (733)
T ss_pred ccchhhh--------------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeec
Confidence 3310000 0000111111 2244566675442111 12222 5889999999999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCeEEEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceE
Q psy3053 767 DGCRVLSCGNN---CMLNVYDLTTGMQVCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL 842 (917)
Q Consensus 767 dg~~L~s~s~D---g~I~iwDl~tg~~i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~ 842 (917)
.|.+|++...+ ..|.|+++........+ ...+.+.++.|+|....+..+....|++||+.....++.+......|.
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS 611 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWIS 611 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeee
Confidence 99999988654 46889998766555444 346779999999977666667778999999998877777766666666
Q ss_pred EE--eecCCEEEEEeCCCeEEEEECcCC-eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 843 SL--HFDNCTMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 843 si--s~dg~~Lasgs~DG~I~Iwdl~tg-~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
++ ++.|..|+.|+.|+.+..+|++-. ++.+++.-|...|++++|++.-.++++|+.||++.|+--
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 66 778999999999999999999754 577888889999999999999999999999999998853
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-17 Score=192.25 Aligned_cols=279 Identities=18% Similarity=0.284 Sum_probs=209.1
Q ss_pred EEEEeCCCc-EEEEE----------ecCCceEEEeccC--Cc----eeeeeeccccceEEEEEeCCCCE----EEEEecc
Q psy3053 585 AVAICGEGI-SVASV----------GRDAMLKIHSLKT--GR----QERSAVLSSMTLSSLCILPDNCT----MLVGCWD 643 (917)
Q Consensus 585 sv~fSpdg~-~Lasg----------s~Dg~I~IWd~~t--~~----~~~~~~~~~~~V~sl~~spd~~~----Lasgs~D 643 (917)
.++|||++. ++++| +.+.++-+|.+.- .. ...++. .......++|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467788775 44433 3455666776542 22 122221 3445778999987665 8889999
Q ss_pred cEEEEEEecc---C---eeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce
Q psy3053 644 SCVVIYDVEC---G---RIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI 716 (917)
Q Consensus 644 g~I~Iwdl~t---g---~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V 716 (917)
|.|.+||... + ..+.+...|++.|..+.|++.. +.||+|+.||.|.|||+.......... .....+.|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-----~~~~~~eI 164 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-----SQAPPSEI 164 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-----CCCCcccc
Confidence 9999999865 2 3356677899999999999964 599999999999999998753222211 23356789
Q ss_pred EEEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecCCCC-CCeEEEEEecCC-CEEEEEeCCC---eEEEEECCCCe-
Q psy3053 717 KCLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSDDIN-ASVNGVLFSEDG-CRVLSCGNNC---MLNVYDLTTGM- 789 (917)
Q Consensus 717 ~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~-~~V~~v~fspdg-~~L~s~s~Dg---~I~iwDl~tg~- 789 (917)
.+++|+.. ...|++|+.+|.+.|||++..+.+..+..... ..+..++|+|++ ..+++++.|. .|.+||++...
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 99999985 46788899999999999999888777763222 457899999975 4566666553 69999987542
Q ss_pred EEEEe-ecCCceEEEEEeCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee---cCCEEEEEeCCCeEEEE
Q psy3053 790 QVCNK-VFEEKLLCLSWAGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 790 ~i~~~-~~~~~i~~l~~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iw 863 (917)
.+... .|...|.+++|.+. ..+++++.|+.|.+|+..+++.+..+......+..++| +...+++++-||.|.|+
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 33333 57778999999864 36889999999999999999999999988889999977 45579999999999999
Q ss_pred ECcCCe
Q psy3053 864 DVECGR 869 (917)
Q Consensus 864 dl~tg~ 869 (917)
.+..+.
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987554
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-15 Score=147.09 Aligned_cols=280 Identities=15% Similarity=0.170 Sum_probs=207.3
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEecc---------C-eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVEC---------G-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t---------g-~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
.|.+-+++|.++++++|..+|.|.+..+.+ | ..+...++|.++|..++|+. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 455667999999999999999999999864 1 23445589999999999984 6777776 699999987
Q ss_pred CCCCCCc--cCC----cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC
Q psy3053 694 GASWSHM--KPS----KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED 767 (917)
Q Consensus 694 ~~~~~~~--~~~----~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd 767 (917)
+...... +.. .+.......-..|+++.+.|..+-++.++.|+.++-||+++|+..+.+. +|.+.|.+++--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeeccc
Confidence 5542110 000 0011111123468899999988778777899999999999999999999 99999999998666
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecC-----------CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec
Q psy3053 768 GCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-----------EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 768 g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-----------~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~ 836 (917)
...+++|++||++++||.++++.+..+... .-|.|++.+.+ .+++ +....+.+|.++..++...+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvC-GgGp~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVC-GGGPKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEe-cCCCceeEEeccCCCceEEEe-
Confidence 668999999999999999999988766532 22555555554 5554 455689999999988877765
Q ss_pred CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcce
Q psy3053 837 HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR-KRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 837 h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg-~~LaSgs~DG~V~IWdl~~~l 911 (917)
-.+.+..+.++...+++++..+.|.-|.+. |..-......+...++..|+... ++|-.+|....+.|+.--+++
T Consensus 245 ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~~~~~~ 319 (325)
T KOG0649|consen 245 IPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILKDFRFL 319 (325)
T ss_pred cccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeeecccch
Confidence 345677778888999999988899999875 66666666656667777776544 344456777777776543333
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=180.65 Aligned_cols=336 Identities=16% Similarity=0.174 Sum_probs=222.9
Q ss_pred ccCCccccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCC-------ceeeeeeccccceEEEEEeCCCC
Q psy3053 564 WCDKSILEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 564 w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~-------~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
|+.. ...+..+..|+..|..++.+++. .+++|||.||+|++|+...- +...++...+..+.++...+.+.
T Consensus 1034 W~p~--G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR--GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCcc--ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 5543 34677888999999999988765 99999999999999998531 11223333567788999999999
Q ss_pred EEEEEecccEEEEEEeccC--e-----eeEEeccCC-Cc-eeEEEecC-CCC-EEEEEECCCeEEEEeCCCCCCCccCCc
Q psy3053 636 TMLVGCWDSCVVIYDVECG--R-----IVTELAGHE-DA-ISCVAWDE-KRK-RLISGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg--~-----~i~~l~~H~-~~-Vt~l~~sp-d~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
.+|+|+.||.|++.+++.. + +......+. +. |..-++.. .+. .|+.+..-+.|..||++.......
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--- 1188 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--- 1188 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh---
Confidence 9999999999999998752 1 111222222 23 33344433 233 788888889999999877521111
Q ss_pred ceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC---CCEEEEEe--CCCe
Q psy3053 705 SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED---GCRVLSCG--NNCM 779 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd---g~~L~s~s--~Dg~ 779 (917)
.......+.|++++.+|.++++++|+..|.+.+||++-+.++.....++..++..+..+|- ....++++ ..+.
T Consensus 1189 --lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1189 --LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred --hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 1122345779999999999999999999999999999999998888778889999888873 24555544 4678
Q ss_pred EEEEECCCCeEEEEeecC---------------------CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEE-EEEecC
Q psy3053 780 LNVYDLTTGMQVCNKVFE---------------------EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLL-KQVRAH 837 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~~~---------------------~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i-~~l~~h 837 (917)
|.+|++.+|.....+-.. ..+.|.-..+++.+++|+.|+.|+.||....... ....+.
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~ 1346 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGP 1346 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCc
Confidence 999999988554333211 1133444456778999999999999999765543 222222
Q ss_pred CCceEEEee-cCCEEEEEeCCCeEE-EEECc-----CCeEEEE--------ecCCCCCEEEEEEcCC-CCEEEEEeCCCc
Q psy3053 838 KDAVLSLHF-DNCTMLVGCWDSCVV-IYDVE-----CGRIVTE--------LAGHEDAISCVAWDEK-RKRLISGNLVGA 901 (917)
Q Consensus 838 ~~~V~sis~-dg~~Lasgs~DG~I~-Iwdl~-----tg~~l~~--------l~~h~~~V~slafSpd-g~~LaSgs~DG~ 901 (917)
.......+. .+..++.|+.--... +.... .+..... -..|.++|+++++... ..+|++++.||.
T Consensus 1347 s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~ 1426 (1431)
T KOG1240|consen 1347 STSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGV 1426 (1431)
T ss_pred cccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCe
Confidence 222221111 112222222210000 00000 0111111 1247889999988653 468999999999
Q ss_pred EEEEe
Q psy3053 902 PKLYA 906 (917)
Q Consensus 902 V~IWd 906 (917)
|+||.
T Consensus 1427 IkiWk 1431 (1431)
T KOG1240|consen 1427 IKIWK 1431 (1431)
T ss_pred eeecC
Confidence 99994
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-14 Score=159.34 Aligned_cols=275 Identities=15% Similarity=0.167 Sum_probs=177.5
Q ss_pred EEEecCCceEEEeccC-Cc--eeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEec-cCee--eEEeccCCCcee
Q psy3053 596 ASVGRDAMLKIHSLKT-GR--QERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVE-CGRI--VTELAGHEDAIS 668 (917)
Q Consensus 596 asgs~Dg~I~IWd~~t-~~--~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~-tg~~--i~~l~~H~~~Vt 668 (917)
++...++.|.+|++.+ ++ .++.+.. ......++++|++++|++++ .++.|.+|+++ +++. ..... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 33 3344432 34567889999999987765 47889999997 3433 22222 334567
Q ss_pred EEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCe
Q psy3053 669 CVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLENHL 746 (917)
Q Consensus 669 ~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~ 746 (917)
.++++|+++++++++. ++.|.+|++.+..... .......+.....+++++|+++++++++ .++.|.+||+.+..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~----~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPV----APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC----CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 8999999999988774 8899999986431111 1111122334567789999998886554 56999999997633
Q ss_pred eeEE-----ecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCC--CeEEEEeecCCceEEEEEeCCCEEEEEeCCC
Q psy3053 747 MTQQ-----LSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTT--GMQVCNKVFEEKLLCLSWAGEEKVILGGALG 818 (917)
Q Consensus 747 ~~~~-----l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~t--g~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG 818 (917)
.+.. ...........++|+|+|++++++.. ++.|.+|++.. ++.... ..+...|.
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~-------~~~~~~p~---------- 222 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV-------QTLDMMPA---------- 222 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE-------EEEecCCC----------
Confidence 2211 11122345678999999999988876 89999999863 221100 00000000
Q ss_pred eEEEEECCCCEEEEEEecCC-CceEEEeecCCEEEEEeC-CCeEEEEECcCCe----EEEEecCCCCCEEEEEEcCCCCE
Q psy3053 819 MVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNCTMLVGCW-DSCVVIYDVECGR----IVTELAGHEDAISCVAWDEKRKR 892 (917)
Q Consensus 819 ~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~~Lasgs~-DG~I~Iwdl~tg~----~l~~l~~h~~~V~slafSpdg~~ 892 (917)
...+.. ..-..++|++++++++.. ++.|.+|++.... .+...... .....++++|+|++
T Consensus 223 --------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~ 287 (330)
T PRK11028 223 --------------DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKY 287 (330)
T ss_pred --------------cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCE
Confidence 000000 111334789999888854 7899999986433 22222221 23457899999999
Q ss_pred EEEEeC-CCcEEEEecC
Q psy3053 893 LISGNL-VGAPKLYATE 908 (917)
Q Consensus 893 LaSgs~-DG~V~IWdl~ 908 (917)
|++++. +++|.+|+++
T Consensus 288 l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 288 LIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEccCCcEEEEEEc
Confidence 998775 8999999985
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=156.41 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=161.9
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
...+.. ..|+.|++.|.++|+|+.||.|.|||+.+...-+.+. +|-.+|++++||+||+.|++++.|..+.+||+..|
T Consensus 20 tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 20 TLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred eccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 334444 7899999999999999999999999999988766666 89999999999999999999999999999999999
Q ss_pred eEEEEeecCCceEEEEEeCC--CEEEEEeCCCeEEEEECCCCEEEEEEe---cCCCceEE---EeecCCEEEEEeCCCeE
Q psy3053 789 MQVCNKVFEEKLLCLSWAGE--EKVILGGALGMVYLVDLIQVQLLKQVR---AHKDAVLS---LHFDNCTMLVGCWDSCV 860 (917)
Q Consensus 789 ~~i~~~~~~~~i~~l~~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~---~h~~~V~s---is~dg~~Lasgs~DG~I 860 (917)
.++..+.++++|..+.|.|. +..++.-.+..-.+.++..++...--. +....+.+ ....|+++++|...|.+
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 99999999999999999874 345555555555555555432111101 11111111 24579999999999999
Q ss_pred EEEECcCCeEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 861 VIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~-~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.++|..+.+++..++-.+ ..|.++.++..|+.|+.-+.|..||.++++
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 999999999998887666 789999999999999999999999999986
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=175.22 Aligned_cols=251 Identities=18% Similarity=0.286 Sum_probs=188.4
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC-CCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW-SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~-~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
++..|.+.|++++|++....|++|+.||++++|++.... .......++....+|.++|.|+++.+++..+.+|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 566799999999999999999999999999999994321 1223345667788999999999999999999999999999
Q ss_pred EEEECCCC---------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCceEEEEE
Q psy3053 738 IIWSLENH---------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV---FEEKLLCLSW 805 (917)
Q Consensus 738 ~iwDl~~~---------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~---~~~~i~~l~~ 805 (917)
+.|++... ..+.....+|.+.|+.+++|+....|++++.||+++.|+.....+ +.+. -.+...++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 99965421 122222238999999999999999999999999999999876665 2221 2223444444
Q ss_pred eCCC--EEEEEeCCCeEEEEECCCCEEEEEEecCC-------CceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 806 AGEE--KVILGGALGMVYLVDLIQVQLLKQVRAHK-------DAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 806 s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-------~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
.... ..++...-+.-.+.+...+..+..+.... ..+.-+ .+.+...+++..|+.|+++|..++.++...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 3321 22233333333344444444333332211 122222 557788999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 875 AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 875 ~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
..|...++++++.|+|.+|++|+.||.+++|+++..
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 999999999999999999999999999999999644
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-15 Score=170.02 Aligned_cols=271 Identities=17% Similarity=0.165 Sum_probs=187.9
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccCee--eE----EeccCCCceeEEEec
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECGRI--VT----ELAGHEDAISCVAWD 673 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg~~--i~----~l~~H~~~Vt~l~~s 673 (917)
++.+.+|++...............|.+++|+|. ..++|.|+.+|.|.+||+..+.. .. ....|.++|+.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 357899999887555555556778999999994 56788888999999999987654 22 233589999999996
Q ss_pred CCC--CEEEEEECCCeEEEEeCCCCCCCccCC-----cceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCCC
Q psy3053 674 EKR--KRLISGSWDCTVRVWNTGASWSHMKPS-----KSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 674 pd~--~~L~Sgs~DgtI~vWdl~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~ 745 (917)
.+. .-++++|.||.|+.|+++.-....... ............+++++|.+. -..+++|+.+|.|..-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 643 459999999999999876542111100 000111233456889999884 578999999999987443332
Q ss_pred eeeE-------EecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCeEEEEeec-CCceEEEEEeCCCEEEEEeC
Q psy3053 746 LMTQ-------QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT-TGMQVCNKVF-EEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 746 ~~~~-------~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~-tg~~i~~~~~-~~~i~~l~~s~~~~lv~gs~ 816 (917)
+.-. .....|.++|.++.++|=+..++.++.|.++++|... ...++..... ...+++++|+|-
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt-------- 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT-------- 452 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc--------
Confidence 2111 1122688999999999976665555559999999865 3333322222 222555555543
Q ss_pred CCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcC--CeEEEEecCCCCCEEEEEEcCCCCEEE
Q psy3053 817 LGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVEC--GRIVTELAGHEDAISCVAWDEKRKRLI 894 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~t--g~~l~~l~~h~~~V~slafSpdg~~La 894 (917)
....++++..||.+.+||+.. ..++.....+....+.+.|++.|+.|+
T Consensus 453 ------------------------------rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 453 ------------------------------RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLA 502 (555)
T ss_pred ------------------------------CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEE
Confidence 233477777888888888753 344555555566778889999999999
Q ss_pred EEeCCCcEEEEecCc
Q psy3053 895 SGNLVGAPKLYATEF 909 (917)
Q Consensus 895 Sgs~DG~V~IWdl~~ 909 (917)
.|+..|++.+|++..
T Consensus 503 vGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 503 VGDANGTTHILKLSE 517 (555)
T ss_pred EecCCCcEEEEEcCc
Confidence 999999999999964
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-15 Score=150.55 Aligned_cols=270 Identities=17% Similarity=0.247 Sum_probs=198.6
Q ss_pred ccEEEEEEeccCee---eEEeccCCCceeEEEecCCC-CEEEEEECC-------CeEEEEeCCCCCCCc--cCCcceeee
Q psy3053 643 DSCVVIYDVECGRI---VTELAGHEDAISCVAWDEKR-KRLISGSWD-------CTVRVWNTGASWSHM--KPSKSLVSQ 709 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~---i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~D-------gtI~vWdl~~~~~~~--~~~~~~~~~ 709 (917)
|+.|.+.+++.+.. ...+..|.+.|+.++-+|-. ..|+|+..+ ..+.||.+....... .+...+..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 78888888775432 24566788999999999954 455555442 257799986653221 111111111
Q ss_pred -ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee-eEEec----CCCCCCeEEEEEec--CCCEEEEEeCCCeEE
Q psy3053 710 -LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM-TQQLS----DDINASVNGVLFSE--DGCRVLSCGNNCMLN 781 (917)
Q Consensus 710 -~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~-~~~l~----~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~ 781 (917)
..+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. ..+....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 13456899999999999888866 78899999987765 33332 13455678889999 77777765 488999
Q ss_pred EEECCCCeEEEEee--cCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEEee---cCCEEEE
Q psy3053 782 VYDLTTGMQVCNKV--FEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHF---DNCTMLV 853 (917)
Q Consensus 782 iwDl~tg~~i~~~~--~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~---dg~~Las 853 (917)
.||+++......+. |...+..+.++|+. .+++++.||.|++||.+.. .++.++.+|...|.++.+ ..++|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999877665543 56678999999864 4788999999999999865 578999999999999955 5678999
Q ss_pred EeCCCeEEEEECcCC-----------------------------eEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEE
Q psy3053 854 GCWDSCVVIYDVECG-----------------------------RIVTELAGHEDAISCVAWDEKRK-RLISGNLVGAPK 903 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg-----------------------------~~l~~l~~h~~~V~slafSpdg~-~LaSgs~DG~V~ 903 (917)
|+.|..|.+|...+- ..+.++..|.+.|.+++||.-.. .+|+-+.||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 999999999954211 12446677999999999987555 567789999999
Q ss_pred EEecCcceEEE
Q psy3053 904 LYATEFYLLYV 914 (917)
Q Consensus 904 IWdl~~~ll~~ 914 (917)
|=++..++.+.
T Consensus 357 Is~V~r~~ky~ 367 (370)
T KOG1007|consen 357 ISSVPRFLKYR 367 (370)
T ss_pred eecCChhhhhh
Confidence 98887665554
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=154.38 Aligned_cols=242 Identities=17% Similarity=0.223 Sum_probs=184.7
Q ss_pred eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc------CCcceeeeccCCCceEEEEEe-------CCCCEEEEEEC
Q psy3053 667 ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------PSKSLVSQLDLDNRIKCLAIS-------KDNNQLAVGTE 733 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------~~~~~~~~~~h~~~V~~l~~s-------pdg~~Lasgs~ 733 (917)
...+.|+|||..|++-+.|..+.+|++....-... ..............|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45678999999999999999999999854321111 111222233445667777775 57789999999
Q ss_pred CCeEEEEECCCCeeeEEecC-CCC---CCeEEEEEecCCCEEEEEeCCCeEEEEEC-CCCeEE---EEe-----ecCCce
Q psy3053 734 AGELIIWSLENHLMTQQLSD-DIN---ASVNGVLFSEDGCRVLSCGNNCMLNVYDL-TTGMQV---CNK-----VFEEKL 800 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~-~h~---~~V~~v~fspdg~~L~s~s~Dg~I~iwDl-~tg~~i---~~~-----~~~~~i 800 (917)
+..|++||.-+|+....+.. .|. ....+++|+|||..|++|. .++|+++|+ +.|... .++ ...+-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988776652 122 2456899999999988765 678999999 555322 112 224568
Q ss_pred EEEEEeCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC-CCeEEEEECcC-CeEEEEe
Q psy3053 801 LCLSWAGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW-DSCVVIYDVEC-GRIVTEL 874 (917)
Q Consensus 801 ~~l~~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~-DG~I~Iwdl~t-g~~l~~l 874 (917)
.|++++|. +.+++|+....+-++.-..+.++..+-+|.+.|+.+ .++|+.|.+|.. |-.|..||++. +.++..+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 89999974 358889999999999999999999999999999998 559999999875 77899999975 4567777
Q ss_pred cCCCC-CEEE--EEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 875 AGHED-AISC--VAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 875 ~~h~~-~V~s--lafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
..|.+ .-.. ....|++++|++|+.||.|++||++.
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 77755 2223 45578999999999999999999986
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-15 Score=156.71 Aligned_cols=266 Identities=13% Similarity=0.167 Sum_probs=193.9
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEEEeccCeeeE--EeccCC-Cce
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIYDVECGRIVT--ELAGHE-DAI 667 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iwdl~tg~~i~--~l~~H~-~~V 667 (917)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||+++..... ...+|. .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999877 45688999999999999998765443 344555 466
Q ss_pred eEEEecCCCCEEEEEE----CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEEC
Q psy3053 668 SCVAWDEKRKRLISGS----WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs----~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl 742 (917)
.|++..-.++.+++|+ .|..|.+||++..... .......|.+.|+++.|+|. .++|++|+.||-|.++|+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch-----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 7777766777888775 4678999999876221 11223568999999999995 589999999999999999
Q ss_pred CCCee----eEEecCCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeEEEEeecC--------------CceEEE
Q psy3053 743 ENHLM----TQQLSDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFE--------------EKLLCL 803 (917)
Q Consensus 743 ~~~~~----~~~l~~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--------------~~i~~l 803 (917)
..... +..+ .+...|.++.|..++ +.|.+-+..++..+|+++.+........+ .-|.+.
T Consensus 196 ~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 196 KKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred CCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 76522 2223 367789999999876 45888888999999999988754333221 112333
Q ss_pred EEeCCCEEEEEeC-CCeEEEEECC---C---CEEEEEEec-CCCceEEEee--cCCEEEEEeCCCeEEEEEC
Q psy3053 804 SWAGEEKVILGGA-LGMVYLVDLI---Q---VQLLKQVRA-HKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 804 ~~s~~~~lv~gs~-dG~I~vwdl~---~---~~~i~~l~~-h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl 865 (917)
.....+..++++. .|...++-+. + ++.+..+.+ |...|.++.+ .+..+.+|++||.+.+|..
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 2333334444433 5555555433 2 234555555 5666677744 5778999999999999985
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=154.23 Aligned_cols=240 Identities=20% Similarity=0.236 Sum_probs=185.8
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
..++.-.++|+|.+|++|+..+|.+.....|.||.....+ ..+++..|...|+.++|+|..+.|++++.|..-++|.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 3444456899999999999999999999999999987654 5678888999999999999999999999999999999
Q ss_pred e-ccC--eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 651 V-ECG--RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 651 l-~tg--~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
. +.+ +..-.+..|..+++++.|+|.++.+|+||....|.||-.+....-. ........+.+.|++++|+|++-+
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW---VsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW---VSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee---hhhhhCCccccceeeeeccCCcce
Confidence 8 444 3455566799999999999999999999999999999876542110 011123456788999999999999
Q ss_pred EEEEECCCeEEEEECCC------------------CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 728 LAVGTEAGELIIWSLEN------------------HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~------------------~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
+++|+.|+.++++..-- |++..+.. ...+.+..+.|+|+|..|+-.+.|+++.+-|.....
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999986421 12222222 356789999999999999999999999999987664
Q ss_pred E-EEE-eecCCceEEEEEeCCCEEEEEeCC
Q psy3053 790 Q-VCN-KVFEEKLLCLSWAGEEKVILGGAL 817 (917)
Q Consensus 790 ~-i~~-~~~~~~i~~l~~s~~~~lv~gs~d 817 (917)
. +.. ....-+..++.|-.+..+++++.+
T Consensus 240 ~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred hhccchhhccCCceeeEeecCCceeecCCC
Confidence 2 222 222345666666655556555555
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=156.45 Aligned_cols=246 Identities=13% Similarity=0.157 Sum_probs=176.4
Q ss_pred cCCcceEEEEEeCCC----cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCC-CEEEEEecccEEEEEEec
Q psy3053 578 SHKEAITAVAICGEG----ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN-CTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg----~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwdl~ 652 (917)
.|.+.-..++|+-+. .++|+||.-|.|+|.|+.+++....+.+|+..|..+.+.|+. +++++||.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 367777788887653 478999999999999999999999999999999999999975 688999999999999999
Q ss_pred cCeeeEEec---cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC--C------------Ccc-------CCcceee
Q psy3053 653 CGRIVTELA---GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW--S------------HMK-------PSKSLVS 708 (917)
Q Consensus 653 tg~~i~~l~---~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~--~------------~~~-------~~~~~~~ 708 (917)
+..++..+. ||.+.|.++.|+.+|.+|++++.|.++++|++.... . ... .......
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999988875 699999999999999999999999999999987431 0 000 0001112
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC-CCeeeEEecC------------CCCCCeEEEE--EecCCCEEEE
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE-NHLMTQQLSD------------DINASVNGVL--FSEDGCRVLS 773 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~-~~~~~~~l~~------------~h~~~V~~v~--fspdg~~L~s 773 (917)
..-|...|.|+.|- |+++++-+-++.|..|... -++.+..... -....|.-+. |.|-++.||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 23466677777776 6789998889999999872 1221111110 1233444444 4566788999
Q ss_pred EeCCCeEEEEECCCCeEEEE--ee---cCCceEEEEEeCCCE-EEEEeCCCeEEEEEC
Q psy3053 774 CGNNCMLNVYDLTTGMQVCN--KV---FEEKLLCLSWAGEEK-VILGGALGMVYLVDL 825 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~--~~---~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl 825 (917)
|...|.+.+||++...+... .. ....|...+++.++. +++.+.++.|.-||.
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 99999999999987654211 11 123345555554332 444555566655553
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-16 Score=168.91 Aligned_cols=261 Identities=16% Similarity=0.190 Sum_probs=193.3
Q ss_pred eeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc--------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeE
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC--------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTV 688 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t--------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI 688 (917)
++..|...+.++++.|....|++++.||.+.+|++.. -+.+.++.+|.++|.|++..+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4455778889999999999999999999999999932 25678899999999999999999999999999999
Q ss_pred EEEeCCCCCCC---ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEE
Q psy3053 689 RVWNTGASWSH---MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLF 764 (917)
Q Consensus 689 ~vWdl~~~~~~---~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~f 764 (917)
+.|++...... ..+........+|.+.|+.+++|+....|++++.||+++.|+...... .++.. ...+...++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 99987633211 112223345679999999999999999999999999999999877665 33321 11223334444
Q ss_pred ecCC-CEEEEEeCCCeEEEEECCCCeEEEEeecC--------CceEEEEEeCC-CEEEEEeCCCeEEEEECCCCEEEEEE
Q psy3053 765 SEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFE--------EKLLCLSWAGE-EKVILGGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 765 spdg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--------~~i~~l~~s~~-~~lv~gs~dG~I~vwdl~~~~~i~~l 834 (917)
-... ...++...-+.-.+.+...+..+..+... ..+.-+.+.+. +..+++..++.|+++|..+++++...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 3322 22223222333334444444333322211 23455555553 46778889999999999999999999
Q ss_pred ecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC
Q psy3053 835 RAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 835 ~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
..|...++++ .++|-+|++|+.||++++|.+....++.....|.
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9999999998 6689999999999999999998888877776664
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=157.62 Aligned_cols=209 Identities=18% Similarity=0.238 Sum_probs=168.2
Q ss_pred EeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCe
Q psy3053 659 ELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGE 736 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~ 736 (917)
.+.||+++|..++|+| +.+.|||||.|.+|+||++..+............+.+|...|-.++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999 66789999999999999998776555555667788899999999999996 478899999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCC-ceEEEEEeCCCEEEEE
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-VFEE-KLLCLSWAGEEKVILG 814 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~-~i~~l~~s~~~~lv~g 814 (917)
|.+|++.+|+.+..+. |...|.++.|+.||.++++++.|..|+|||.++++.+... .|.+ ....+.|-+++.+++.
T Consensus 156 v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999888876 9999999999999999999999999999999999988775 3433 3445556666667665
Q ss_pred e----CCCeEEEEECCCCE---EEEEEecCCCceEEE-eecCCEEEE-EeCCCeEEEEECcCCe
Q psy3053 815 G----ALGMVYLVDLIQVQ---LLKQVRAHKDAVLSL-HFDNCTMLV-GCWDSCVVIYDVECGR 869 (917)
Q Consensus 815 s----~dG~I~vwdl~~~~---~i~~l~~h~~~V~si-s~dg~~Las-gs~DG~I~Iwdl~tg~ 869 (917)
+ ++..+-+||..+.. ...++....+...-+ .+|.+.+.. |-.|+.|+.|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5 35689999887654 334444444444444 667777654 5579999999987665
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-14 Score=140.55 Aligned_cols=267 Identities=13% Similarity=0.128 Sum_probs=197.4
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccC---------C-ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKT---------G-RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t---------~-~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
.|.+-+++|.++++++|+.+|.|.+..+.+ + ..+...+.|.+++..++|. +..|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 466778999999999999999999998753 1 2234457899999999998 44666665 599999987
Q ss_pred ccCee------eE--EeccCC-----CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 652 ECGRI------VT--ELAGHE-----DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 652 ~tg~~------i~--~l~~H~-----~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
..... .. ...-|. -.|+++-..|..+-+++++.|+.+.-||++++ .......+|.+.+.+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-------~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-------RIQREYRGHTDYVHS 161 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-------EEEEEEcCCcceeee
Confidence 53211 11 111233 35889999998888888889999999999988 344557899999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC---------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD---------INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~---------h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
+.--.....+++|++||++++||+++++.+..+... ....|-+++.+ ..++++|+ ...+.+|.+++.+
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCC
Confidence 998777778999999999999999999988877521 12235555544 44777665 4579999999999
Q ss_pred EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeec---CCEEEEEeCCCeEEEE
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFD---NCTMLVGCWDSCVVIY 863 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~d---g~~Lasgs~DG~I~Iw 863 (917)
+.+.+..+.++..+.|..+ .+++++....|.-|.+. |..-..++......++.+++ -+++-.++....+.|+
T Consensus 239 ~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 239 STCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ceEEEecccceeEeeeecc-eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 9999999999999999988 88888888889988873 44444444444444444432 2345555566666655
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=169.57 Aligned_cols=284 Identities=18% Similarity=0.224 Sum_probs=205.5
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccC---CCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCC-C
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH---EDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASW-S 698 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H---~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~-~ 698 (917)
-..+.++|-...++++...-.|++||.+.++....+..+ ...|+.+.+-. |...+++|+.||.|+||+--... .
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 456778888888999988889999999999987777644 35688888854 55789999999999999743321 0
Q ss_pred Ccc---CCcceee-eccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEE
Q psy3053 699 HMK---PSKSLVS-QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLS 773 (917)
Q Consensus 699 ~~~---~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s 773 (917)
..+ ....+.. ..+..+.-.-++|.....+|++++.-..|+|||+.....+..+..+....|+++.-+. .|+.+++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE
Confidence 000 0000000 0111122245678777777777777889999999999888888766677788776554 5799999
Q ss_pred EeCCCeEEEEECCCCeE---EE-EeecCCc--eEEEEEeC--CCEEEEEeCCCeEEEEECCCCEEE--EEEecCC--C-c
Q psy3053 774 CGNNCMLNVYDLTTGMQ---VC-NKVFEEK--LLCLSWAG--EEKVILGGALGMVYLVDLIQVQLL--KQVRAHK--D-A 840 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~---i~-~~~~~~~--i~~l~~s~--~~~lv~gs~dG~I~vwdl~~~~~i--~~l~~h~--~-~ 840 (917)
|..||.|++||.+.... +. ...|... |..+.+.+ .+.+++|+.+|.|++||++..... -++..|. + .
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 99999999999876543 22 2334444 77777765 446999999999999999874221 2222232 3 4
Q ss_pred eEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCC-------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 841 VLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH-------EDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 841 V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h-------~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+++ +.+...+|+|+. +.|+||++. |+.+..++.+ .+.+.+++|+|..-.||+|+.|.+|.||..+..
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6776 668889999998 999999986 5544444322 356899999999999999999999999987654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-13 Score=152.80 Aligned_cols=322 Identities=14% Similarity=0.089 Sum_probs=208.4
Q ss_pred cEE-EEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEE
Q psy3053 593 ISV-ASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671 (917)
Q Consensus 593 ~~L-asgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~ 671 (917)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.++||++++.+++.||.|.++|+.+++.+.++.... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 344 445568999999999999999888765444557789999999999999999999999999999887544 467899
Q ss_pred ecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeE
Q psy3053 672 WDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQ 749 (917)
Q Consensus 672 ~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~ 749 (917)
+++||++++++. .++.+.++|..+....................+..+..++....++..-. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998776 68999999987752110000000000113456778888888886666555 4889888987765443
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeEEEEeecC-----CceEEEE-------E--eCCC-EEEE
Q psy3053 750 QLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTGMQVCNKVFE-----EKLLCLS-------W--AGEE-KVIL 813 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg~~i~~~~~~-----~~i~~l~-------~--s~~~-~lv~ 813 (917)
.-............|+|++++++++ ..++.+.++|..+++.+...... .+...+- | ...+ ..++
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2221345677889999999987665 45778999999999887655432 2222221 2 1111 1223
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEE----eCCCeEEEEECcCCeEEEEecCCC-CCEEEEEEc
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVG----CWDSCVVIYDVECGRIVTELAGHE-DAISCVAWD 887 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasg----s~DG~I~Iwdl~tg~~l~~l~~h~-~~V~slafS 887 (917)
.-..+.+.+||..+.+.++++....+++.-. +|+++++.+. ...++|.++|.++.+.+..+.... ..+..+.|+
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred cccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 3333456678889999999998776664433 8999999988 445899999999998888875332 358999999
Q ss_pred CCCCEEEEEeCC--CcEEEEecCcc-eEEEE
Q psy3053 888 EKRKRLISGNLV--GAPKLYATEFY-LLYVL 915 (917)
Q Consensus 888 pdg~~LaSgs~D--G~V~IWdl~~~-ll~~L 915 (917)
+||+.+..+..+ |.|.|+|..+. ++..+
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 999987765443 46999999865 44444
|
... |
| >KOG1787|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-17 Score=200.80 Aligned_cols=239 Identities=15% Similarity=0.012 Sum_probs=215.1
Q ss_pred HHHHHHHHcCCCChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCC-ccccCCHhHHHHHHHH
Q psy3053 264 EIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSK-PIGALNPTRLERLKER 342 (917)
Q Consensus 264 ~~~~~~w~~~~isnf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlsk-p~g~~~~~r~~~~~~~ 342 (917)
.....+|+...++++.||+++|+++||++|+.+|||.|||...++-+...|+..+..|||.++ |+||++++++..+...
T Consensus 852 ~~~v~r~~~~~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~~~ar~~~~l~~~~~~ 931 (1126)
T KOG1787|consen 852 NQFVARRLRDDISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVTCGARLEQYLAALQYP 931 (1126)
T ss_pred cceehhhcccchhheeeeeecceEEEeccCccccccCccccccceEeeehhhhccccccccceeeeeecccccccccccc
Confidence 356789999999999999999999999999999999999999999999999999999999999 9999999999999887
Q ss_pred HccCC---CCCcccCCCCCChhhHhhhhcccCchh--HHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccCC
Q psy3053 343 YNEMP---HPKFLYGSHYSTPGFVLFYLVRKFPQY--MLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDT 417 (917)
Q Consensus 343 ~~~~~---~~~~~y~~~ys~~~~v~~~l~r~~p~~--~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~~ 417 (917)
+.... .+.++|| |||+.|-+.+|+-|.+|+. .+.+++|+||+.+++|..+...|+...+.+..+++|.|.-.+.
T Consensus 932 ~s~s~D~tI~~~~~s-~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~~~~~~~~i~~~~gl~l~~~~~ 1010 (1126)
T KOG1787|consen 932 VSSSEDGTIPLLYWS-HISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISGAKGGLCLIHLVGGLLLRLLEH 1010 (1126)
T ss_pred cccCCCcceeeeeec-cccccccccccccccCccchheecccceeeeecchhhhhhhhhcccccceeeeecchhhhcccC
Confidence 77654 4789999 9999999999999999974 5689999999999999999999999999999999999999965
Q ss_pred CCCcccccccCCCCCccccCCceeCCeecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCcc
Q psy3053 418 EQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLF 497 (917)
Q Consensus 418 ~~~~~fl~n~~~~~~g~~~~~~~~~dv~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~f 497 (917)
|+++.+..-..++.+.+......+..|.|+.++-. .+|.+.|.-+.+.||+|++| +..+++..
T Consensus 1011 ---~~~~~~~~~~s~s~t~~~l~l~~~~~~v~~t~~~~-------~~~~~~I~v~~~~~~~l~~~-------~~~~~~~~ 1073 (1126)
T KOG1787|consen 1011 ---PINLSILGLISLSETINCLELYEPGRFVNYTKNGK-------DDEQRHIEVGSEDEILLTGG-------WQMANLEK 1073 (1126)
T ss_pred ---ccceechhhhhhcccccchhhccccccceeccccc-------cccccceEeecccchhhcch-------hhhccccc
Confidence 58999998899999999999999999999988665 89999999999999999999 56788888
Q ss_pred ceeeeccccccCcccChHHHHHH
Q psy3053 498 YYLCYEGSVNLDMVQDWNQRHAL 520 (917)
Q Consensus 498 ~~l~yeg~v~~~~i~d~~~r~a~ 520 (917)
....+.....+..+..+..+..+
T Consensus 1074 ~~i~~~~~~~i~~~s~~~sq~~~ 1096 (1126)
T KOG1787|consen 1074 LYIYFGNGAGIPAISLTFSQRLL 1096 (1126)
T ss_pred eEEEecCCCCccccccccchhhh
Confidence 88888777777776665544433
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=153.38 Aligned_cols=205 Identities=15% Similarity=0.229 Sum_probs=162.8
Q ss_pred eeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEeccC-------eeeEEeccCCCceeEEEecCC-CCEEEEEECCC
Q psy3053 616 RSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECG-------RIVTELAGHEDAISCVAWDEK-RKRLISGSWDC 686 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg-------~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~Dg 686 (917)
-.+.+|.++|..++|+| ++..||+||.|.+|.||.+..+ +.+..+.||...|-.++|+|. .+.|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34568999999999999 5678999999999999998754 446788999999999999994 57899999999
Q ss_pred eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC-CCeEEEEEe
Q psy3053 687 TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN-ASVNGVLFS 765 (917)
Q Consensus 687 tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~-~~V~~v~fs 765 (917)
+|.+|++.++ .......|.+.|.+++|+.+|.++++++.|..|+|||.++++.+..-. +|. ..-..+.|-
T Consensus 155 ~v~iWnv~tg--------eali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl 225 (472)
T KOG0303|consen 155 TVSIWNVGTG--------EALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFL 225 (472)
T ss_pred eEEEEeccCC--------ceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEe
Confidence 9999999988 223334599999999999999999999999999999999999998875 444 455667788
Q ss_pred cCCCEEEEEe---CCCeEEEEECCCCe---EEEEeecCCceEEEEEeCCCE--EEEEeCCCeEEEEECCCCE
Q psy3053 766 EDGCRVLSCG---NNCMLNVYDLTTGM---QVCNKVFEEKLLCLSWAGEEK--VILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 766 pdg~~L~s~s---~Dg~I~iwDl~tg~---~i~~~~~~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~~~~ 829 (917)
.+|..+.+|- .+..+.+||..+-+ ....+.....|.---++++.. +++|-.|+.|+.|.+.+..
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 8888444442 46789999876532 233444455566556666543 5688899999999987654
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=162.38 Aligned_cols=307 Identities=17% Similarity=0.216 Sum_probs=225.9
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeC--CCCEEEEEecccEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILP--DNCTMLVGCWDSCV 646 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I 646 (917)
+.....|..|.+.|..|.|...|..+++||.|..|.+||+..+.....+ .+|...|....|.| +...+++++.||.+
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445678899999999999999999999999999999999988776554 46777777777877 45689999999999
Q ss_pred EEEEecc-Cee--eEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC---ceEEE
Q psy3053 647 VIYDVEC-GRI--VTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN---RIKCL 719 (917)
Q Consensus 647 ~Iwdl~t-g~~--i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~---~V~~l 719 (917)
++=.+.. +.+ ...+..|.++|..++.-|+. ..+.|++.|+.+.-.|++..... ........+.. ....+
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa----~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA----EKFVCREADEKERVGLYTI 287 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc----ceeeeeccCCccceeeeeE
Confidence 9987654 332 34566799999999998864 56889999999999999876321 11112222222 56788
Q ss_pred EEeCCCC-EEEEEECCCeEEEEECCCCee------eEEecC-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 720 AISKDNN-QLAVGTEAGELIIWSLENHLM------TQQLSD-----DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 720 ~~spdg~-~Lasgs~dG~I~iwDl~~~~~------~~~l~~-----~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
+.+|... .+++|+.|-.+++||.+.-.. +..+.+ .....|++++|+.++.-++++-.|-.|+++.-..
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 8898664 899999999999999875322 122221 2235688999998887777777787888884322
Q ss_pred CeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC--ceEEEe---ecCCEEEEEeCCCeEEE
Q psy3053 788 GMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD--AVLSLH---FDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 788 g~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~--~V~sis---~dg~~Lasgs~DG~I~I 862 (917)
+.- ..++. .++ +..-..+.++||.. .|..+. |...++++|+.-|.|.|
T Consensus 368 ~~G------~~p~~---~s~------------------~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 368 GDG------SEPDP---SSP------------------REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred ccC------CCCCC---Ccc------------------hhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 110 00000 000 00011122567754 355554 45689999999999999
Q ss_pred EECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 863 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 863 wdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
|+-.+++.+.-+.+....|.|+.=+|--..|||+|-|..|+||.-
T Consensus 421 W~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 999999999988887779999999999999999999999999987
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=158.28 Aligned_cols=200 Identities=20% Similarity=0.201 Sum_probs=162.1
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc-
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG- 662 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~- 662 (917)
.+++|+.+|..+++|+.||++|||++.+...+.....|...|.++.|+|||+.|++-+.| ..+||++++|..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888887888899999999999999999999999 899999999977665542
Q ss_pred -CCCceeEEEecCCC---CE--EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 663 -HEDAISCVAWDEKR---KR--LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 663 -H~~~Vt~l~~spd~---~~--L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
-......+.|+.++ .+ .+....-+.|+.|++...... ..............|++++++++|++++.|+.||.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 23346677887766 22 333344567777776543211 11122222334557999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~ 786 (917)
|.+++..+.+.++..+..|...|+.+.|+||.+.+++.+.|....+..+.
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999999999988999999999999999999999988888877654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=157.00 Aligned_cols=262 Identities=14% Similarity=0.212 Sum_probs=187.7
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceE-EEEEe-------CCCCEEEEEecccEEEEE
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLS-SLCIL-------PDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~-sl~~s-------pd~~~Lasgs~Dg~I~Iw 649 (917)
.|...|.|+.|+.+...+.+++.+..+.-|++.+. ....+.....-+. .+..- .....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46667778999988776666655444444554332 2222221111111 11111 123578888999999888
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
+- .++....+.+|.++|.|-.|+|+|.-|+|++.||.|++|.-... ..........+|.|++|.|+.+.++
T Consensus 91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--------LRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--------LRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--------HHHHHhhcCceeEEEEECCCCCceE
Confidence 74 47778888999999999999999999999999999999986443 1112334567899999999987666
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE 809 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~ 809 (917)
.+ ..|.+.+=.+.....+-... .|.+-|.++.|++....+++|++|-..++||...........++.+|++++|+|+.
T Consensus 162 ~c-~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 162 FC-QGGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred Ee-cCCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecccc
Confidence 53 45677777776665566666 89999999999999999999999999999998765555666788899999999994
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEE
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iw 863 (917)
.+++++ -.++++= ....+.|..+ ++||..+++|+..|.+.+-
T Consensus 240 ~~~v~S-~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 DYLLWS-YNTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeee-eeeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 444444 3344421 2245666666 5699999999999987654
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=146.62 Aligned_cols=273 Identities=16% Similarity=0.166 Sum_probs=187.9
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecC--------CceEEEeccCCc---------eeeeee-ccccceEEEEEeCCCC
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRD--------AMLKIHSLKTGR---------QERSAV-LSSMTLSSLCILPDNC 635 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~D--------g~I~IWd~~t~~---------~~~~~~-~~~~~V~sl~~spd~~ 635 (917)
..+..|.+.|..++-+|-...|++.... ....||.+.... ++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4567789999999999976555443321 246799886422 223333 2445789999999999
Q ss_pred EEEEEecccEEEEEEeccCee-eEEec-----cCCCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCccee
Q psy3053 636 TMLVGCWDSCVVIYDVECGRI-VTELA-----GHEDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~-i~~l~-----~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
.+++-. |..|.+|+++.+.. +..+. +|....++-+|+| +++.+++.+ |+++..||+++.. ....
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~------~~~s 208 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK------KNNS 208 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchh------hhcc
Confidence 988876 88999999998765 33332 3566788899998 777887765 8999999998762 1222
Q ss_pred eeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCe-eeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEE
Q psy3053 708 SQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHL-MTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 708 ~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwD 784 (917)
....|...|..+.|+|+. .+|++|+.||.|++||.+..+ ++..+. +|...|.++.|+| ..+++++++.|..|.+|.
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 345688889999999986 467889999999999998754 455555 8999999999999 456888999999999987
Q ss_pred CCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee---cCCEEEEEeCCCeEE
Q psy3053 785 LTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVV 861 (917)
Q Consensus 785 l~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~ 861 (917)
..+-.....+......... + +.+..=++ ..-....+.++..|.+.|.++.| |.=.+|+-+.||.+.
T Consensus 288 a~svSSE~qi~~~~dese~---e-------~~dseer~-kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESES---E-------DEDSEERV-KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred ccccccccccccccccccC---c-------chhhHHhc-ccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 6432111111111000000 0 00000000 01112245667789999999966 566789999999998
Q ss_pred EEECc
Q psy3053 862 IYDVE 866 (917)
Q Consensus 862 Iwdl~ 866 (917)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 86654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=155.61 Aligned_cols=185 Identities=16% Similarity=0.276 Sum_probs=151.3
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
....+|.++|.|-.|+|||.-|+|+|.||.|++|+ .+|....++.....+|.|++|.|+.+.++.+. .+.+.|=.+.-
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~ 175 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAA 175 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccc
Confidence 45688999999999999999999999999999998 45655555566678899999999887665543 35566666666
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
...+-..++|.+-|.++.|++.++.+++|+.|...++||-... .+.....|+.+|++++|+|+ ..++.|+.
T Consensus 176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--------~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--------NLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--------ccccCChhccceeeeeeccc-cceeeeee
Confidence 6667778899999999999999999999999999999997543 45556678999999999999 66666664
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
+ +++ +..+..+.|..++||+||..+++|+..|.+.+
T Consensus 247 n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 247 N-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred e-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 3 222 44456789999999999999999998887654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=138.68 Aligned_cols=314 Identities=12% Similarity=0.131 Sum_probs=207.8
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc--cEEEEEEeccCeee
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--SCVVIYDVECGRIV 657 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--g~I~Iwdl~tg~~i 657 (917)
...+..+.|..++..|..|+.||. ++++.+...........+..|.-+.|+ ..++|..+.+ ..+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 345667779999988999998885 778776544432222233334444454 3466655544 35899999888777
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE--ECCC
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG--TEAG 735 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg--s~dG 735 (917)
..+. ....|.++.+.. ++|+++-.+. |.|||+.+.. ....+.....+...+.++++++++.++|.- ...|
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~Mk----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMK----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccce----eehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 7765 456789999875 6777766554 9999998762 111222222445557777777777788864 3469
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCeEEEEeecC---CceEEEEEeCCCEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM-LNVYDLTTGMQVCNKVFE---EKLLCLSWAGEEKV 811 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~-I~iwDl~tg~~i~~~~~~---~~i~~l~~s~~~~l 811 (917)
.|.+||+.+-+.+..+. .|.+++.+++|+++|.+||++++.|+ |||+.+.+|+.+.++.-+ ..|.+++|++++.+
T Consensus 154 dV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred eEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 99999999999999998 99999999999999999999999987 799999999999887654 45888999987765
Q ss_pred E-EEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC---CCeEEEEECcCCeEEEEecCCC-CCEEEEEE
Q psy3053 812 I-LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW---DSCVVIYDVECGRIVTELAGHE-DAISCVAW 886 (917)
Q Consensus 812 v-~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~---DG~I~Iwdl~tg~~l~~l~~h~-~~V~slaf 886 (917)
+ +.+..++|++|.+.... ......+-....+.+...-.... .+.-.+||....-....+.... ..+..+.-
T Consensus 233 L~~sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~ 308 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVS----NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS 308 (391)
T ss_pred EEEecCCCeEEEEEecccc----cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence 5 55667999999986544 11111111111111111111100 1112235554333333333221 13344443
Q ss_pred cCCCCEEEEEeCCCcEEEEecCc
Q psy3053 887 DEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl~~ 909 (917)
.+...++..++.||.+..+.++.
T Consensus 309 ~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 309 IQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cCCCCEEEEEEcCCeEEEEEcCC
Confidence 45788999999999999999974
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-14 Score=162.89 Aligned_cols=234 Identities=15% Similarity=0.121 Sum_probs=163.4
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---CeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
+..|++||.+... .+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.++.. ..+ ....+...++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-----~~l---~~~~g~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-----KVV---ASFRGHNGAP 253 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-----EEE---ecCCCccCce
Confidence 4789999987554 56677788899999999999999988754 3799999976521 111 1122234468
Q ss_pred EEeCCCCEEEEEE-CCCeEE--EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC-eEEEEe
Q psy3053 720 AISKDNNQLAVGT-EAGELI--IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTG-MQVCNK 794 (917)
Q Consensus 720 ~~spdg~~Lasgs-~dG~I~--iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg-~~i~~~ 794 (917)
+|+|||+.|+.++ .+|.+. +||+.++.. ..+. .+...+....|+|||+.++.++ .+|...+|++... ......
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999999888764 677655 457766654 3444 4566788899999999877665 5677888876432 112222
Q ss_pred ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEEC--cCCeEEE
Q psy3053 795 VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDV--ECGRIVT 872 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl--~tg~~l~ 872 (917)
.... .+..|+|++..++......+.+||+.+++.......+...-.+++|+|++|+.++.+|.+.+|++ .+|+...
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 2222 45678887764433333557779998887543323333333456899999999999998888875 3688888
Q ss_pred EecCCCCCEEEEEEcCC
Q psy3053 873 ELAGHEDAISCVAWDEK 889 (917)
Q Consensus 873 ~l~~h~~~V~slafSpd 889 (917)
.+.+|.+.+...+|||-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 89889988999999984
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=148.15 Aligned_cols=191 Identities=21% Similarity=0.265 Sum_probs=147.5
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 717 KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
.+++++.+|..+++|+.||++++|+..+...+.... .|...|.++.|+|||+.|++.+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999999999999999999999977766666555 788999999999999999999999 899999999977665542
Q ss_pred ---CCceEEEEEeCCC-----EEEEEe-CCCeEEEEECCCCEE-----EEEEecCCCceEEE--eecCCEEEEEeCCCeE
Q psy3053 797 ---EEKLLCLSWAGEE-----KVILGG-ALGMVYLVDLIQVQL-----LKQVRAHKDAVLSL--HFDNCTMLVGCWDSCV 860 (917)
Q Consensus 797 ---~~~i~~l~~s~~~-----~lv~gs-~dG~I~vwdl~~~~~-----i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I 860 (917)
+.....+.|..++ ++++.. ..+.|..|++...+. .++.......|+++ +.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 2234445555433 223222 235666666543221 11111223355555 8899999999999999
Q ss_pred EEEECcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 861 VIYDVECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
-|++..+.+.+.-. +.|...|+.+.|+||.+++++.+.|....|..+..
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999988887765 56999999999999999999999999999888764
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-13 Score=156.41 Aligned_cols=331 Identities=11% Similarity=0.093 Sum_probs=225.2
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC----CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT----GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t----~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
..|...++|.++||+++++|+|..||.|.+|.--. ....+.+.-|...|.+++|+++|.+|.+|++.|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45777799999999999999999999999997432 23355677788999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc--CC-cc-eeeeccCCCceEEEEEeCCCCEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK--PS-KS-LVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~--~~-~~-~~~~~~h~~~V~~l~~spdg~~L 728 (917)
+++ .+-++.-.++|..+.++||+...+....|..|.+-...+...... .. .. ........+-.+.++++|..+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 666777889999999999999999999999999998755421100 00 00 00012234557788999987888
Q ss_pred EEEECCCeEEEEECCCCeeeEEecC----CC------CCCeEEEEEecCCCEEEEEe--------CCC--eEEEEECCCC
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSD----DI------NASVNGVLFSEDGCRVLSCG--------NNC--MLNVYDLTTG 788 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~----~h------~~~V~~v~fspdg~~L~s~s--------~Dg--~I~iwDl~tg 788 (917)
+-.+..|.|.+||+-+.+.+..+.. .+ ...++.++.+..|.++++.- .|| .++.|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 8889999999999988776655531 11 23567778888899988874 233 4677865443
Q ss_pred eEE----EEe--ecCCceEEEEEe--CCC-EEEEEeCCCeEEEEECCCCE----------EEEEEecCCCceEEE--eec
Q psy3053 789 MQV----CNK--VFEEKLLCLSWA--GEE-KVILGGALGMVYLVDLIQVQ----------LLKQVRAHKDAVLSL--HFD 847 (917)
Q Consensus 789 ~~i----~~~--~~~~~i~~l~~s--~~~-~lv~gs~dG~I~vwdl~~~~----------~i~~l~~h~~~V~si--s~d 847 (917)
... ..+ +|+......++. ... ..++++.+|.+++|-+...+ +...-.-|..++++. +-|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 222 222 233333333332 332 78899999999999884321 111111256666666 446
Q ss_pred CCEEEEEeCCCeEEEEECcCC-eEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCc
Q psy3053 848 NCTMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEK--RKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg-~~l~~l~~h~~~V~slafSpd--g~~LaSgs~DG~V~IWdl~~ 909 (917)
|. +++.+.|++|.+||..+. ........-..++..+.+... ....+.....+.+.+|++-.
T Consensus 521 Gs-lla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~ 584 (792)
T KOG1963|consen 521 GS-LLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLS 584 (792)
T ss_pred Cc-EEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhh
Confidence 75 555667889999999884 333332222223333333221 11233344566788888754
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-13 Score=138.48 Aligned_cols=303 Identities=14% Similarity=0.129 Sum_probs=208.5
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccC
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGH 663 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H 663 (917)
-++|||+|+++|+++.- .+.|-|.++-+..+.+.. -..|.-+.|..|..+++++ ..|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999865 677778776655443332 3456778899888777665 56889999999998888889888
Q ss_pred CCceeEEEecCCCCE-EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--------
Q psy3053 664 EDAISCVAWDEKRKR-LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-------- 734 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~-L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-------- 734 (917)
.+++.+++|+|||+. |.+...|-.|.+|.+.+.. .....-....+..++|+|+|++.+..+.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQI 162 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccce--------eEEecccccCceeEEECCCCceeeeeecccHHHHHHH
Confidence 999999999999955 5567789999999997752 12222233445778888888877665431
Q ss_pred ----------------------------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q psy3053 735 ----------------------------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 735 ----------------------------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~ 786 (917)
..+.+||.--.-.+... ..+-.+..++|+|.++++++|+.|+.+++.+--
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 12334442211111111 234578899999999999999999988875522
Q ss_pred CCeEEEE------------------------------------------------------------ee----c---CCc
Q psy3053 787 TGMQVCN------------------------------------------------------------KV----F---EEK 799 (917)
Q Consensus 787 tg~~i~~------------------------------------------------------------~~----~---~~~ 799 (917)
+-+.... .. . ...
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 1110000 00 0 012
Q ss_pred eEEEEEeCCCEEEEEeCC---CeEEEEECCCCEEEEEEecCCCceEEEe--ecCCEEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 800 LLCLSWAGEEKVILGGAL---GMVYLVDLIQVQLLKQVRAHKDAVLSLH--FDNCTMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 800 i~~l~~s~~~~lv~gs~d---G~I~vwdl~~~~~i~~l~~h~~~V~sis--~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
+.-++|+++..+++.-.| +.+.+||++..+....+. ...+|.+.. |....++.+.....+++|.......+. .
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-v 398 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-V 398 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-c
Confidence 455788888777777666 579999998876544442 355677774 445557777667779999886544443 3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3053 875 AGHEDAISCVAWDEKRKRLISGNLVGA 901 (917)
Q Consensus 875 ~~h~~~V~slafSpdg~~LaSgs~DG~ 901 (917)
.+..-.|..+.|.-+|..++-.+.|.-
T Consensus 399 P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 399 PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 334467999999999999999998863
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=141.45 Aligned_cols=206 Identities=16% Similarity=0.209 Sum_probs=166.4
Q ss_pred ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe---eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCC
Q psy3053 620 LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR---IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696 (917)
Q Consensus 620 ~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~---~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~ 696 (917)
.-..+|+|.+|++|+..+|++.....|.||...... ..+++..|...|++++|+|.++.|++++.|..-.+|....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345689999999999999999999999999987654 67888999999999999999999999999999999998443
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee---EEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT---QQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~---~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
...........+...++|+.|+|.++.+|+|+....|.+|-.+...-- +.+..++...|.++.|+|++-++++
T Consensus 88 ----~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 ----GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred ----CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 123344556678899999999999999999999999999987654332 2334467889999999999999999
Q ss_pred EeCCCeEEEEECC-----C-------------CeEEEEe-ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCE
Q psy3053 774 CGNNCMLNVYDLT-----T-------------GMQVCNK-VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 774 ~s~Dg~I~iwDl~-----t-------------g~~i~~~-~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~ 829 (917)
|+.|+.++++..- . |+.+.+. ...+-+..+.|+++| .++-.+.|+.+.+-|.....
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999998641 1 1112222 234568899998654 57778999999999987664
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-15 Score=172.24 Aligned_cols=241 Identities=16% Similarity=0.243 Sum_probs=188.6
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+.++.+.+|-.+|.|+.|...|.++++|+.|..++||..+++.+.....||.+.|+.++.+.+...++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34566778999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe----cCCCCCCeEEEEEecCC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL----SDDINASVNGVLFSEDG 768 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l----~~~h~~~V~~v~fspdg 768 (917)
+..+ ..+....+|.+.|++++|+|-. +.+.||++++||.+- ...... ......-+.++.|..++
T Consensus 261 l~~~-------~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 261 LPDG-------APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred cCCC-------chHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccc
Confidence 9876 3455578999999999999965 678899999999871 111111 11223456667777777
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecC
Q psy3053 769 CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDN 848 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg 848 (917)
..+++++.|+.-..|... +++|.....+++.+.. | ..
T Consensus 329 ~~f~Tgs~d~ea~n~e~~---------------~l~~~~~~lif~t~ss------d----------------------~~ 365 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFE---------------QLAWRSNLLIFVTRSS------D----------------------LS 365 (1113)
T ss_pred cccccccCCcccccchhh---------------HhhhhccceEEEeccc------c----------------------cc
Confidence 778888888776666543 1222222222221111 1 01
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecC
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR-LISGNLVGAPKLYATE 908 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~-LaSgs~DG~V~IWdl~ 908 (917)
.+.+++-.+-.+++|++.+|...+.+.+|...+..+.++|-... ..+++.||...|||+-
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 34566667888999999999999999999999999999996554 5589999999999984
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=146.22 Aligned_cols=277 Identities=21% Similarity=0.219 Sum_probs=185.9
Q ss_pred cccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEecc--------C--------CceeeeeeccccceEEEEEeC
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLK--------T--------GRQERSAVLSSMTLSSLCILP 632 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~--------t--------~~~~~~~~~~~~~V~sl~~sp 632 (917)
.++.+..+..|..+|++|.|+|+|..||+|+.+|.|.+|... + ....+.+.+|...+..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 345567789999999999999999999999999999999865 2 112345667889999999999
Q ss_pred CCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC---------
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS--------- 703 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~--------- 703 (917)
++..+++|+.|+++++||+..|.....+.+|...|..++|.|-++++++-|.|...+..++..........
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 99999999999999999999999999999999999999999999999999999866666654331100000
Q ss_pred ---cceeeeccCCC----ceEEEEEeCCCCEEEEEEC----CCeE-----EEEECCCC-eeeEEecCCCCCCeEEEEEec
Q psy3053 704 ---KSLVSQLDLDN----RIKCLAISKDNNQLAVGTE----AGEL-----IIWSLENH-LMTQQLSDDINASVNGVLFSE 766 (917)
Q Consensus 704 ---~~~~~~~~h~~----~V~~l~~spdg~~Lasgs~----dG~I-----~iwDl~~~-~~~~~l~~~h~~~V~~v~fsp 766 (917)
.......-|+. -...++|+|+|.++++.+. +|.+ ++++-... ++...+. ....++..+.++|
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~p 292 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSP 292 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeee
Confidence 00001111222 2345788999998887542 1222 22222111 1111221 2223333333333
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-cCCCceEEEe
Q psy3053 767 DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLH 845 (917)
Q Consensus 767 dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~h~~~V~sis 845 (917)
..|.++.-... +. +-.-|-+.+++......|++||..+..++.... -|-.+++.++
T Consensus 293 --------------Vy~elrp~~~~-------~~--~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDia 349 (434)
T KOG1009|consen 293 --------------VYYELRPLSSE-------KF--LFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIA 349 (434)
T ss_pred --------------eEEEecccccc-------cc--ccccccceEEEEeecceEEEeccccccceEEEeeeeeeeeccee
Confidence 11222110000 00 111234456666677789999999888777664 4888898885
Q ss_pred e--cCCEEEEEeCCCeEEEEECcCCe
Q psy3053 846 F--DNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 846 ~--dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
| ||..++..+.||-..+-.++..+
T Consensus 350 ws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 350 WSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ecCCCcEEEEeccCCceEEEEEcchh
Confidence 5 78899999999977766665443
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-13 Score=157.10 Aligned_cols=281 Identities=16% Similarity=0.198 Sum_probs=195.9
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecc---ccceEEEEEeC--CCCEEEEEecccEEEEEEec-c-
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS---SMTLSSLCILP--DNCTMLVGCWDSCVVIYDVE-C- 653 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~---~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iwdl~-t- 653 (917)
.+-..+.|+|-...++++...-.|++||.+.++....+..+ ...|+.+.+.. |..++++|+.||.|+||+-- +
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34556778888888999988889999999999888776654 34588888764 55689999999999999732 2
Q ss_pred ---CeeeEEecc-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 654 ---GRIVTELAG-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 654 ---g~~i~~l~~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
.+.+..+.+ -.+.=.-+.|-....+|+++|.-..|+|||..... .......+.+..|+++.-+.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~------~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ------VVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce------eEeecccCCCccceeecccc
Confidence 233333322 11112345677766677777778899999987651 11111223455667666544
Q ss_pred -CCCEEEEEECCCeEEEEECCCCee---eEEecCCCCCC--eEEEEEecCCCE-EEEEeCCCeEEEEECCCCeEEEE---
Q psy3053 724 -DNNQLAVGTEAGELIIWSLENHLM---TQQLSDDINAS--VNGVLFSEDGCR-VLSCGNNCMLNVYDLTTGMQVCN--- 793 (917)
Q Consensus 724 -dg~~Lasgs~dG~I~iwDl~~~~~---~~~l~~~h~~~--V~~v~fspdg~~-L~s~s~Dg~I~iwDl~tg~~i~~--- 793 (917)
.|+.+++|..||.|++||.+.... +.... .|... |..+.+.+.|-. |++|+.+|.|++||++.......
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence 469999999999999999986533 33333 66666 999999987655 99999999999999987422211
Q ss_pred ---eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec-------CCCceEEE--eecCCEEEEEeCCCeEE
Q psy3053 794 ---KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA-------HKDAVLSL--HFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 794 ---~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~-------h~~~V~si--s~dg~~Lasgs~DG~I~ 861 (917)
...++..+++..+....++++++.+.|.+|++...+ +..+.. ..+.+.|+ +|..-.+|+|+.|..|.
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCcceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 112445899999987666655555999999986433 222221 23455677 55566789999999999
Q ss_pred EEECcCCe
Q psy3053 862 IYDVECGR 869 (917)
Q Consensus 862 Iwdl~tg~ 869 (917)
||....+.
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99876543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-13 Score=135.15 Aligned_cols=272 Identities=16% Similarity=0.252 Sum_probs=192.0
Q ss_pred cceEEEEEeC--C-CCEEEEEec----ccEEEEEEec--cCeeeEEe-ccCCCceeEEEecCCC-----CEEEEEECCCe
Q psy3053 623 MTLSSLCILP--D-NCTMLVGCW----DSCVVIYDVE--CGRIVTEL-AGHEDAISCVAWDEKR-----KRLISGSWDCT 687 (917)
Q Consensus 623 ~~V~sl~~sp--d-~~~Lasgs~----Dg~I~Iwdl~--tg~~i~~l-~~H~~~Vt~l~~spd~-----~~L~Sgs~Dgt 687 (917)
.++.++.|+. + ..+||.|+. .+.|.|..++ +++.+..- ..|.-+++.+.|.|+. ..|||++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3456677763 2 347888864 4667776654 34433221 3588999999999975 3555543 47
Q ss_pred EEEEeCCCCCCCccCC--cceeeeccCCCceEEEEEeC-CCCEEEEEECCCeEEEEECCCCee---eEEecCCCCCCeEE
Q psy3053 688 VRVWNTGASWSHMKPS--KSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELIIWSLENHLM---TQQLSDDINASVNG 761 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~--~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~~~---~~~l~~~h~~~V~~ 761 (917)
+++|.+.......... ........+..++++..|+. +.+++.+++-|-++.|||++++.. ..++. .|...|..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI-AHDKEV~D 201 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI-AHDKEVYD 201 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE-ecCcceeE
Confidence 9999987532211111 11112345678999999987 568999999999999999998733 33444 89999999
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEECCCCeEE---EEeec-CCceEEEEEeCCC--EEEE-EeCCCeEEEEECCCC-EEEE
Q psy3053 762 VLFSEDG-CRVLSCGNNCMLNVYDLTTGMQV---CNKVF-EEKLLCLSWAGEE--KVIL-GGALGMVYLVDLIQV-QLLK 832 (917)
Q Consensus 762 v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~i---~~~~~-~~~i~~l~~s~~~--~lv~-gs~dG~I~vwdl~~~-~~i~ 832 (917)
++|..++ ..++++|.||.++++|++..+.- ..-.. ..+...++|++.. ++++ +-....|.+.|++.. .++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 9999855 47889999999999999875432 22222 4567788888543 3443 344578999999864 6889
Q ss_pred EEecCCCceEEEee---cCCEEEEEeCCCeEEEEECcCCeE------EEEecCCCCCEEEEEEcC-CCCEEEEEeC
Q psy3053 833 QVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVECGRI------VTELAGHEDAISCVAWDE-KRKRLISGNL 898 (917)
Q Consensus 833 ~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~tg~~------l~~l~~h~~~V~slafSp-dg~~LaSgs~ 898 (917)
++++|.+.|..++| .+..|+++++|..+.+||+.+.-. +-.+. -.+.|..+.|++ .+.+++.+..
T Consensus 282 ~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 282 RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 99999999999966 677899999999999999975322 22222 457899999996 4567766643
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=154.25 Aligned_cols=235 Identities=17% Similarity=0.271 Sum_probs=170.2
Q ss_pred EeCCCcEEEE--EecCCceEEEeccC-Cceeee-e--eccccceEEEEEeC-CCCEEEEEecccEEEEEEeccC------
Q psy3053 588 ICGEGISVAS--VGRDAMLKIHSLKT-GRQERS-A--VLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECG------ 654 (917)
Q Consensus 588 fSpdg~~Las--gs~Dg~I~IWd~~t-~~~~~~-~--~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg------ 654 (917)
|+.+..++|. ++..|.|-|+++.. |+.... + ......|+.+.|.| |...||+++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 3344445543 45678999999864 332211 1 12455689999999 7789999999999999999764
Q ss_pred -eeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 655 -RIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 655 -~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.....+.+|...|+++.|+| ..+.|++++.|.+|++||+.++ .....+.+|.+.|..++|||+|+.+|+.+
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-------~~~~~l~gHtdqIf~~AWSpdGr~~AtVc 739 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-------KLYSRLVGHTDQIFGIAWSPDGRRIATVC 739 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-------hhhheeccCcCceeEEEECCCCcceeeee
Confidence 34567889999999999999 4578999999999999999876 34455789999999999999999999999
Q ss_pred CCCeEEEEECCCCee-eEEecCCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCCC--eEEEEeecCC--ce--E
Q psy3053 733 EAGELIIWSLENHLM-TQQLSDDINASVNGVLFSEDGCRVLSCGNNC----MLNVYDLTTG--MQVCNKVFEE--KL--L 801 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg----~I~iwDl~tg--~~i~~~~~~~--~i--~ 801 (917)
.||+|++|..++++. ++.-.......-..+.|.-+|+++++.+-|. .|.+||..+- ..+.....+. .+ .
T Consensus 740 KDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP 819 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP 819 (1012)
T ss_pred cCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc
Confidence 999999999987643 3333323334556788999999999887664 5888887543 2333222221 11 1
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCE
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~ 829 (917)
....+.+-.+++|-.|..|.+|.+-...
T Consensus 820 ~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 820 HYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred cccCCCceEEEecCCCceEEEEEecCCC
Confidence 1112223346778888999999885543
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=154.82 Aligned_cols=257 Identities=16% Similarity=0.122 Sum_probs=182.7
Q ss_pred CeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
|..+..+..|...|..++.++.. .+++|||.||+|++|+.....................+.+.++...+.++.+|+|+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 77888889999999999987754 99999999999999998765433222233333344678899999999999999999
Q ss_pred CCCeEEEEECCCCe-------eeEEecCCCCCCeEEE-EEec-CCC-EEEEEeCCCeEEEEECCCCeEEEEeec---CCc
Q psy3053 733 EAGELIIWSLENHL-------MTQQLSDDINASVNGV-LFSE-DGC-RVLSCGNNCMLNVYDLTTGMQVCNKVF---EEK 799 (917)
Q Consensus 733 ~dG~I~iwDl~~~~-------~~~~l~~~h~~~V~~v-~fsp-dg~-~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~ 799 (917)
.||.|.+.+++... ..+.......+.+.++ ++.. .+. .++.+..-+.+..||+++......... .+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 99999999987621 1111111223344443 3332 333 677888889999999988766555443 466
Q ss_pred eEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEe-cCCCceEEE--ee---cCCEEEEEe--CCCeEEEEECcCCeE
Q psy3053 800 LLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSL--HF---DNCTMLVGC--WDSCVVIYDVECGRI 870 (917)
Q Consensus 800 i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~-~h~~~V~si--s~---dg~~Lasgs--~DG~I~Iwdl~tg~~ 870 (917)
+++++.++.+ .++.|+..|.+.+||++-+.++..+. ++..++..+ .+ .....++++ ..+.|.+|++.+|.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 9999999754 68889999999999999998888775 344666655 33 234555444 467899999999876
Q ss_pred EEEecCC-------------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 871 VTELAGH-------------------EDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 871 l~~l~~h-------------------~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
...+... .-+....++...+..+.+|+.|+.|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6555432 011122333334568999999999999998654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-11 Score=136.49 Aligned_cols=252 Identities=9% Similarity=0.104 Sum_probs=162.5
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEe-cCCceEEEecc-CCce--eeeeeccccceEEEEEeCCCCEEEEEec-ccE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVG-RDAMLKIHSLK-TGRQ--ERSAVLSSMTLSSLCILPDNCTMLVGCW-DSC 645 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~-t~~~--~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~ 645 (917)
+.+..+. +.+....++++|++++|++++ .++.|.+|++. ++.. ..... .......++++|+++.+++++. ++.
T Consensus 26 ~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 26 TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 3444443 345677899999999887765 58889999986 3332 22222 2234568999999998888764 889
Q ss_pred EEEEEecc-Ce---eeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 646 VVIYDVEC-GR---IVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 646 I~Iwdl~t-g~---~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
|.+|++++ +. .+..+. +.....+++++|+++++++++ .++.|.+||+.+... ...................++
T Consensus 104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-ccccCCCceecCCCCCCceEE
Confidence 99999974 32 223333 234467789999999886555 569999999976321 110000011112234567899
Q ss_pred EeCCCCEEEEEEC-CCeEEEEECCC--Ce--eeEEecC--C---CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCe
Q psy3053 721 ISKDNNQLAVGTE-AGELIIWSLEN--HL--MTQQLSD--D---INASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGM 789 (917)
Q Consensus 721 ~spdg~~Lasgs~-dG~I~iwDl~~--~~--~~~~l~~--~---h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~ 789 (917)
|+|+|+++++++. ++.|.+|++.. ++ .+..+.. . +......+.++|+|++++++.. ++.|.+|++....
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999999988876 89999999973 32 2333321 0 1122346889999999998864 7899999985432
Q ss_pred ----EEEEeecCCceEEEEEeCCCE-EEEEe-CCCeEEEEECC
Q psy3053 790 ----QVCNKVFEEKLLCLSWAGEEK-VILGG-ALGMVYLVDLI 826 (917)
Q Consensus 790 ----~i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~ 826 (917)
.+...........+.+++++. ++++. .++.|.+|++.
T Consensus 262 ~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 222222333455677776654 44444 37788888764
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-13 Score=135.57 Aligned_cols=223 Identities=17% Similarity=0.249 Sum_probs=165.2
Q ss_pred ccCCcceEEEEEeCCC-----cEEEEEecCCceEEEeccCC--cee--ee-----eeccccceEEEEEeC-CCCEEEEEe
Q psy3053 577 HSHKEAITAVAICGEG-----ISVASVGRDAMLKIHSLKTG--RQE--RS-----AVLSSMTLSSLCILP-DNCTMLVGC 641 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg-----~~Lasgs~Dg~I~IWd~~t~--~~~--~~-----~~~~~~~V~sl~~sp-d~~~Lasgs 641 (917)
-.|.-+++.+.|.|+. .+|||++ ..+|+|.+... +.. .. -..+..++++..|.. +-+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3577899999999986 3566554 57999998732 211 11 123456889999986 667899999
Q ss_pred cccEEEEEEeccCe---eeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc-CCCce
Q psy3053 642 WDSCVVIYDVECGR---IVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD-LDNRI 716 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~---~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~~~V 716 (917)
-|-+..|||+++|. ....+-+|...|..++|..++ +.+|++|.||+|+++|++... ...+..... ...+.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-----HSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-----HSTIIYEDPSPSTPL 245 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-----cceEEecCCCCCCcc
Confidence 99999999999873 366778899999999999754 578999999999999998752 111222222 25677
Q ss_pred EEEEEeCCC-CEEEEEEC-CCeEEEEECCCC-eeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCe---
Q psy3053 717 KCLAISKDN-NQLAVGTE-AGELIIWSLENH-LMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGM--- 789 (917)
Q Consensus 717 ~~l~~spdg-~~Lasgs~-dG~I~iwDl~~~-~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~--- 789 (917)
..++|++.. +++|+-.. ...|.+.|++.. .++..+. .|.+.|++++|.| .+..|++||.|..+.+||+..--
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 888998854 66666444 456999999875 4556666 8999999999999 46789999999999999996432
Q ss_pred ---EEEEeecCCceEEEEEeC
Q psy3053 790 ---QVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 790 ---~i~~~~~~~~i~~l~~s~ 807 (917)
++......+.|..+.|++
T Consensus 325 ~~dPilay~a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 325 GEDPILAYTAGGEVNQIQWSS 345 (364)
T ss_pred CCCchhhhhccceeeeeeecc
Confidence 223334567788888874
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-12 Score=132.84 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=174.5
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--CeEEEEE
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA--GELIIWS 741 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d--G~I~iwD 741 (917)
...+..+.|..+...|..|+.|| -++++.+.-. ........+..|.-+-|+. .++|..+.+ ..+++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-------k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-------KCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-------HhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEE
Confidence 34567777988888888999888 4778765431 1111222233444555553 455555444 4589999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC----CceEEEEEeCCCEEEE---E
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE----EKLLCLSWAGEEKVIL---G 814 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~----~~i~~l~~s~~~~lv~---g 814 (917)
.+.+..+..+. ...+|.+|.++.+ .|+++-.+. |+|||+++-+.+.++... ..+.+++.+..+..++ .
T Consensus 75 ~Kk~~~ICe~~--fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 75 FKKKTTICEIF--FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred cccCceEEEEe--cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 98888777775 5678888888654 666666554 999999999888776543 3355566665444333 3
Q ss_pred eCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCe-EEEEECcCCeEEEEecCCC--CCEEEEEEcCC
Q psy3053 815 GALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSC-VVIYDVECGRIVTELAGHE--DAISCVAWDEK 889 (917)
Q Consensus 815 s~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~-I~Iwdl~tg~~l~~l~~h~--~~V~slafSpd 889 (917)
...|.|.+||..+.+.+..+..|.+.+.|+ +++|.+||++++.|+ |||+.+.+|+.+.++.... ..|.+++|+|+
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 346999999999999999999999999999 669999999999997 6999999999999997544 45889999999
Q ss_pred CCEEEEEeCCCcEEEEecCcc
Q psy3053 890 RKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 890 g~~LaSgs~DG~V~IWdl~~~ 910 (917)
+.+|++.|..++|+||.++..
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999754
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=149.56 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=183.3
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccCCce--ee----eeeccccceEEEEEeCCC
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKTGRQ--ER----SAVLSSMTLSSLCILPDN 634 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~--~~----~~~~~~~~V~sl~~spd~ 634 (917)
.+|+-.....|...+.. ...|+|++|+|. .++++.|+.+|.|.+||+..+.. .. ....|..++..+.|..+.
T Consensus 225 ~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 225 LVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 57887766666665543 568999999995 56788888999999999987654 22 223477889999997654
Q ss_pred --CEEEEEecccEEEEEEeccCeee------EEec------cCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 635 --CTMLVGCWDSCVVIYDVECGRIV------TELA------GHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 635 --~~Lasgs~Dg~I~Iwdl~tg~~i------~~l~------~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
.-+++++.||.|..|+++.-... .... .-...+++++|.+ +...++.|+.+|.|..=+-......
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 45999999999999987643221 1111 1234688999987 4567899999998876333222111
Q ss_pred c-cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC-CCeeeEEecCCCCCCeEEEEEecC-CCEEEEEeC
Q psy3053 700 M-KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE-NHLMTQQLSDDINASVNGVLFSED-GCRVLSCGN 776 (917)
Q Consensus 700 ~-~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~-~~~~~~~l~~~h~~~V~~v~fspd-g~~L~s~s~ 776 (917)
. ...+.......|.++|.++.++|=+..++..+.|.++++|+.. ...++..+. .+...|++++|||- ...++++..
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcC
Confidence 1 1112233456789999999999977655555559999999988 555555555 56677999999995 457778888
Q ss_pred CCeEEEEECCCCe--EEEEeec-CCceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 777 NCMLNVYDLTTGM--QVCNKVF-EEKLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 777 Dg~I~iwDl~tg~--~i~~~~~-~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
||.+.+||+.... ++..... .....++.|++.+ .+++|...|.+.+|++.
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 9999999996442 3333222 3345566677644 46677777888888875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=152.21 Aligned_cols=221 Identities=15% Similarity=0.170 Sum_probs=154.8
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVI 648 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~I 648 (917)
.+.+..|...|.+.+|||||+.|+.++.+ ..|.+||+.+++.... ........+.+|+|||+.|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 35567788899999999999999988754 3699999988754322 11122334689999999888765 5776655
Q ss_pred E--EeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 649 Y--DVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 649 w--dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
| |+.+++ ...+..+...+.+.+|+|||+.|+.++ .+|...+|++...... . ....+.. .+.+|+|+|
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~------~-~~l~~~~--~~~~~SpDG 344 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG------A-SLVGGRG--YSAQISADG 344 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------e-EEecCCC--CCccCCCCC
Confidence 5 555555 455666777889999999999877655 6788999987543111 1 1112222 457899999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC--CCCeEEEEee-cCCceEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL--TTGMQVCNKV-FEEKLLC 802 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl--~tg~~i~~~~-~~~~i~~ 802 (917)
+.++.++.++ +.+||+.+++...... .. ...++.|+|+|+.++.++.++...+|++ .+|.....+. +.+.+..
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~ 420 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKF 420 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCC
Confidence 9998887765 5669999887543322 22 3356789999999999999998887775 3455555543 4455677
Q ss_pred EEEeCC
Q psy3053 803 LSWAGE 808 (917)
Q Consensus 803 l~~s~~ 808 (917)
.+|+|-
T Consensus 421 p~wsp~ 426 (429)
T PRK01742 421 PAWSPY 426 (429)
T ss_pred cccCCC
Confidence 777763
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-11 Score=133.67 Aligned_cols=317 Identities=13% Similarity=0.136 Sum_probs=214.8
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-----ec-----ccEEEEEE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-----CW-----DSCVVIYD 650 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-----s~-----Dg~I~Iwd 650 (917)
.+++..++|++|+++|.+ .++.++|++..++..+.+.... .+.++.|+|.+.+|.+- .. .-.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 346778899999876654 5788999999888644433333 67899999999988752 11 23578999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC--CEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN--NQL 728 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg--~~L 728 (917)
++++.....+......-++..|+.|..+.+ --..+.+.+|+.... ......-|...++.+.+||.+ ..+
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f--------~~~~~kl~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSF--------KTIQHKLSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCc--------cceeeeeeccceeeEEecCCCCCceE
Confidence 999766555544333336889998765433 223567999998763 111122346778889999874 344
Q ss_pred EE-----EECCCeEEEEECCCCeeeEEec--CCCCCCeEEEEEecCCCEEE-EEe--C---------CCeEEEEECCCCe
Q psy3053 729 AV-----GTEAGELIIWSLENHLMTQQLS--DDINASVNGVLFSEDGCRVL-SCG--N---------NCMLNVYDLTTGM 789 (917)
Q Consensus 729 as-----gs~dG~I~iwDl~~~~~~~~l~--~~h~~~V~~v~fspdg~~L~-s~s--~---------Dg~I~iwDl~tg~ 789 (917)
|+ ++.-+.|++|.......-..+. .-....-..+.|++-|.-|+ .++ - ..++++.++....
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 43 3455679999876322211111 01123334577887666433 222 2 2468888888555
Q ss_pred EEEEeecCCceEEEEEeCCCE---EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCC---CeEE
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEK---VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWD---SCVV 861 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~---lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~D---G~I~ 861 (917)
........++|.++.|++++. ++.|-.-..+.++|++ +.++..+. .++-.++ +|.|++++.+|-+ |.|-
T Consensus 263 ~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 263 VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceE
Confidence 566666789999999999873 4456677899999985 44555543 3333334 8899998887754 8999
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEecCcceEEE
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN------LVGAPKLYATEFYLLYV 914 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs------~DG~V~IWdl~~~ll~~ 914 (917)
|||+.+.+++..+..-. -+-+.|+|||.+++|++ .|+.++||+..+.+++.
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 99999988888887533 35679999999999886 47889999999988763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-11 Score=136.26 Aligned_cols=301 Identities=15% Similarity=0.113 Sum_probs=197.9
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeE-E
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC-V 670 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~-l 670 (917)
+..+++++.+|.|..+|..+|+.+.............+ .++..+++++.+|.+..+|.++|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 56788889999999999999998877665543222222 256788889999999999999999887665322 2221 1
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEE
Q psy3053 671 AWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750 (917)
Q Consensus 671 ~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~ 750 (917)
.. .+..++.++.+|.+..||..++............ ...... .+.... +..+++++.+|.+..+|..+|+.+..
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~-~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA-LTLRGS-ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc-eeecCC-CCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 22 2456777888999999999877322111000000 000000 111111 34678888899999999999987765
Q ss_pred ecCCCCC---C---eEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 751 LSDDINA---S---VNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 751 l~~~h~~---~---V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
....... . ...+.-+| .+..+++++.+|.+..+|..+|+.+....... .......+ +.+++++.+|.+..
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~~~-~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAVDD-NRLYVTDADGVVVA 293 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceEeC-CEEEEECCCCeEEE
Confidence 4311110 0 00111111 34578888889999999999998876655332 22233333 48888899999999
Q ss_pred EECCCCEEEEEEecCC-CceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE-EEEcCCCCEEEEEeCCC
Q psy3053 823 VDLIQVQLLKQVRAHK-DAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC-VAWDEKRKRLISGNLVG 900 (917)
Q Consensus 823 wdl~~~~~i~~l~~h~-~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s-lafSpdg~~LaSgs~DG 900 (917)
+|..+++.+....... ....+....+..+++++.+|.|+++|..+|+.+..+..+...+.+ .++. + ..|+.++.||
T Consensus 294 ~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG 371 (377)
T TIGR03300 294 LDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDG 371 (377)
T ss_pred EECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCc
Confidence 9999998876553221 222222346788999999999999999999999988866654332 2332 3 4688999999
Q ss_pred cEEEE
Q psy3053 901 APKLY 905 (917)
Q Consensus 901 ~V~IW 905 (917)
.|..|
T Consensus 372 ~l~~~ 376 (377)
T TIGR03300 372 DLYAF 376 (377)
T ss_pred eEEEe
Confidence 98876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-11 Score=143.06 Aligned_cols=233 Identities=11% Similarity=0.097 Sum_probs=159.2
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC---CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW---DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
..|.+||.+.+.. +.+..+...+.+.+|+|||+.|+..+. +..+.+|++.++. ..........+...+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--------~~~l~~~~~~~~~~~ 249 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------VRQVASFPRHNGAPA 249 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--------eEEccCCCCCcCCeE
Confidence 3688898875543 444556778999999999999987653 4579999987652 111122233445689
Q ss_pred EeCCCCEEEEE-ECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeEEEEe
Q psy3053 721 ISKDNNQLAVG-TEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-C--MLNVYDLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~Lasg-s~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-g--~I~iwDl~tg~~i~~~ 794 (917)
|+|||+.|+.. +.+| .|++||+.+++..+... +...+....|+|||+.|+.++.+ + .|.++|+.++......
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 99999988865 4455 58999999886654332 34567889999999998877754 3 4555677776543332
Q ss_pred ecCCceEEEEEeCCCE-EEEEeCC---CeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCe---EEEEECcC
Q psy3053 795 VFEEKLLCLSWAGEEK-VILGGAL---GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSC---VVIYDVEC 867 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~-lv~gs~d---G~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~---I~Iwdl~t 867 (917)
.......+..|+|++. ++..+.+ ..|.+||+.++........+...-.+++|||+.|+.++.++. +.++++ +
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~ 406 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-D 406 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence 2333456788888765 4443332 468899998876433222222333456899999999888764 667777 4
Q ss_pred CeEEEEecCCCCCEEEEEEcC
Q psy3053 868 GRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 868 g~~l~~l~~h~~~V~slafSp 888 (917)
|.....+.+|.+.+...+|+|
T Consensus 407 G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 407 GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCeEECccCCCCcCCcccCC
Confidence 666777888888999999997
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=138.41 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=184.4
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
.+.+.+|.+.|.++.|+.++++|++|+.|..+++|++........+....+....|.+.|.|++|+.....+.+|..+|+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34566899999999999999999999999999999987643222222223334456789999999999999999999999
Q ss_pred EEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe----EEEEeecCCceEEEEEeCC--C
Q psy3053 737 LIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM----QVCNKVFEEKLLCLSWAGE--E 809 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~----~i~~~~~~~~i~~l~~s~~--~ 809 (917)
|...|+.+.+.+..... ...+.|..+..+|-.+.+++.+.++.|.+||.+..+ +++....+.....+.|+|. .
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999988877652 234589999999999999999999999999997654 3444445556777778764 3
Q ss_pred EEEEEeCCCeEEEEECCCCE-EEEEEe---cCCC----ceEEE-eecCCEEEEEeCCCeEEEEECcCCeEE-EEecCCC-
Q psy3053 810 KVILGGALGMVYLVDLIQVQ-LLKQVR---AHKD----AVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIV-TELAGHE- 878 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~-~i~~l~---~h~~----~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l-~~l~~h~- 878 (917)
.+++.+..|.+-+||.+... .+.... +-.. ..... +++|..+++--....-.+||+.+.++. .... |.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~ 287 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNP 287 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCC
Confidence 57788889999999997643 222111 1111 12222 678888777666666677888765543 3332 22
Q ss_pred ------CCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 879 ------DAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 879 ------~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
..+.+++|..|. .++||+.+-.|++|.+.
T Consensus 288 ~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred Ccceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 357788887664 49999999999999985
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=129.72 Aligned_cols=271 Identities=15% Similarity=0.197 Sum_probs=177.1
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec-cCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCC
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
+..+..++|++.-..+|++..|..|++|+-.. ++...++ .....|+|++|-|.+ ..|+.|+.. -|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 44577889999877889999999999999876 4444443 345689999999954 466666654 5889987543211
Q ss_pred cc-------CCcceeeeccCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 700 MK-------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 700 ~~-------~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.. ...++....+| .+|+++.|++||..+++++- |..|.+||..++..+.... ...+.+.-+.|||||.++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCCEE
Confidence 11 11222223334 78999999999999998875 5789999999987766553 456788999999999999
Q ss_pred EEEeCCCeEEEEEC-CCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCE
Q psy3053 772 LSCGNNCMLNVYDL-TTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT 850 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl-~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~ 850 (917)
.++.-|+..++|.. ++-....-....+.+...+|+|.|..+.-...|.-++|. ++++++-
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lys-------------------l~f~~~~ 314 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYS-------------------LTFDGED 314 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEE-------------------EeecCCC
Confidence 99999999999954 333444444556688889999887655444444333333 3332221
Q ss_pred EE---EEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------cEEEEecCcceEEEE
Q psy3053 851 ML---VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVG--------APKLYATEFYLLYVL 915 (917)
Q Consensus 851 La---sgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG--------~V~IWdl~~~ll~~L 915 (917)
.. .++.-...-+-|+..-.....-.--.+++.+++|.|.|.+||+.-..+ .|.+||........+
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 111112223333321111100011246788999999999999865443 366777765544433
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-13 Score=145.54 Aligned_cols=230 Identities=14% Similarity=0.119 Sum_probs=191.0
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
.-..+.++.+|..++.|+..|.|-.+|+.+++....+... ..|.++.|..+..++|++- ..-++|||-. |..++.+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehh
Confidence 3457889999999999999999999999999887766543 4678888888888877764 5678999965 66667777
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
.| ..|..+.|-|..-+|++++..|.++--|+.++. .+.......+.+..++-+|-+..+-+|...|+|.+|+
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-------lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-------LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhh-------hhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 55 468999999988899999999999999998872 2333344567788889999999999999999999999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
....+++..+. .|.++|.++++.++|++++++|.|..++|||+++-..+.+...+.....++++..+.+++ +....|.
T Consensus 280 P~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~-~~G~~v~ 357 (545)
T KOG1272|consen 280 PNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLAL-SYGDHVQ 357 (545)
T ss_pred CCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceee-ecCCeee
Confidence 99999988888 899999999999999999999999999999999887776666667778888888855554 4555788
Q ss_pred EEE
Q psy3053 822 LVD 824 (917)
Q Consensus 822 vwd 824 (917)
+|.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 883
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-11 Score=125.47 Aligned_cols=295 Identities=17% Similarity=0.226 Sum_probs=182.4
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-ccccceEEEEEeCCC-CEEEEEecccEEEEEEeccC----e
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-LSSMTLSSLCILPDN-CTMLVGCWDSCVVIYDVECG----R 655 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwdl~tg----~ 655 (917)
.+..++|++.-..+|++..|-+|++|+-.+ +....++ .....|+|++|-|.+ +.+++|+.. .|.+|..+.. +
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 456677887666688899999999999876 3333333 345679999999964 566666654 4889986531 1
Q ss_pred e----------eEEeccCCCceeEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 656 I----------VTELAGHEDAISCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 656 ~----------i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
. +..-.|| .+|++++|.+||..++++|. |..|.|||.+++.... + .....+.++-+.||||
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-----L--~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-----L--IPKGLGGFSLLKWSPD 249 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-----c--cccCCCceeeEEEcCC
Confidence 1 1222345 68999999999999999885 5789999998873211 1 1233466889999999
Q ss_pred CCEEEEEECCCeEEEEECCC-CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEE
Q psy3053 725 NNQLAVGTEAGELIIWSLEN-HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCL 803 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~-~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l 803 (917)
|+.+.+++-|+..++|.... ....+... ..+.|...+|+|+|+.|+.+... .-++|.+
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~sg-sp~lysl------------------ 308 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACSG-SPRLYSL------------------ 308 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEcC-CceEEEE------------------
Confidence 99999999999999995543 33333332 34599999999999987765532 2333433
Q ss_pred EEeCCCEEE--EEeCCCeEEEEECCCCEEE--EEEecCCCceEEE--eecCCEEEEEeCCC--------eEEEEECcCCe
Q psy3053 804 SWAGEEKVI--LGGALGMVYLVDLIQVQLL--KQVRAHKDAVLSL--HFDNCTMLVGCWDS--------CVVIYDVECGR 869 (917)
Q Consensus 804 ~~s~~~~lv--~gs~dG~I~vwdl~~~~~i--~~l~~h~~~V~si--s~dg~~Lasgs~DG--------~I~Iwdl~tg~ 869 (917)
.+++..... .++......+-|+..-... .++. .+.+.++ .|.|.++|+.-..+ .|.+||.+..-
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~--cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC--CGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccc--cCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 222111111 1111222223333211100 1111 2334444 66788888865543 36667765443
Q ss_pred EEEEec-C--CCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCc
Q psy3053 870 IVTELA-G--HEDAISCVAWDE---KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 870 ~l~~l~-~--h~~~V~slafSp---dg~~LaSgs~DG~V~IWdl~~ 909 (917)
.+.-.. + ....-..++|+| +|..|..+=..|.+.-+++..
T Consensus 387 ~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 387 PVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred ceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 322220 1 011134566665 567777777778888777653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-10 Score=128.48 Aligned_cols=264 Identities=10% Similarity=0.080 Sum_probs=178.9
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
++-..+|.|.+.|..+.+.+..+......-..++++|||+++++++.||.|.++|+.+. .............
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--------~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--------KVVATIKVGGNPR 81 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--------SEEEEEE-SSEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--------cEEEEEecCCCcc
Confidence 45567899999999999999999866555456789999999999999999999999876 3444455566788
Q ss_pred EEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCC------CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCe
Q psy3053 718 CLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDD------INASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGM 789 (917)
Q Consensus 718 ~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~------h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~ 789 (917)
++++++||+++++++ ..+.+.++|.++.+.++.+... ....+.++..+|....++.+-. .+.|.+.|.....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 999999999998775 6899999999999998887632 2356788888898886655544 5888888876654
Q ss_pred EE--EEeecCCceEEEEEeCCCE-E-EEEeCCCeEEEEECCCCEEEEEEec----CCCceEEE-----------eecCCE
Q psy3053 790 QV--CNKVFEEKLLCLSWAGEEK-V-ILGGALGMVYLVDLIQVQLLKQVRA----HKDAVLSL-----------HFDNCT 850 (917)
Q Consensus 790 ~i--~~~~~~~~i~~l~~s~~~~-l-v~gs~dG~I~vwdl~~~~~i~~l~~----h~~~V~si-----------s~dg~~ 850 (917)
.. .............++++++ + ++...++.|.++|..+++.+..+.. |..+...+ .-.+..
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 33 4455666788889998874 3 3345678999999999988776642 33344333 223333
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEecCcc
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG----NLVGAPKLYATEFY 910 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg----s~DG~V~IWdl~~~ 910 (917)
.++.-..+.+.+||..+.+.++++....++ .-+..+|+++++.+. ...+.|.++|.+..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 333333345667888999999999887777 778889999999988 45589999999875
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-11 Score=139.13 Aligned_cols=221 Identities=14% Similarity=0.143 Sum_probs=149.5
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEec---CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-eccc--EEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGR---DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDS--CVV 647 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg--~I~ 647 (917)
+.+..+.+.+.+.+|||||+.|+..+. +..|.+|++.+++..... .....+.+.+|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 344556778999999999999887653 457899999887643322 222334568999999988865 3344 599
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC-CeEEEE--eCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-CTVRVW--NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI~vW--dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
+||+++++... +..+...+...+|+|||+.|+.++.+ +...+| |+.++ .............+.+|+|+
T Consensus 271 ~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--------~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 271 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--------APQRITWEGSQNQDADVSSD 341 (429)
T ss_pred EEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--------CeEEeecCCCCccCEEECCC
Confidence 99998887654 44445577899999999998877754 455555 55443 11112223344567899999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe---EEEEECCCCeEEEEeecCC
Q psy3053 725 NNQLAVGTEA---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM---LNVYDLTTGMQVCNKVFEE 798 (917)
Q Consensus 725 g~~Lasgs~d---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~---I~iwDl~tg~~i~~~~~~~ 798 (917)
|+.++..+.+ ..|.+||+.++... .+... .......|+|||+.|+.++.++. +.++++..+.......+.+
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence 9998876543 35889999887643 33322 23346789999999999887764 6777875443333333455
Q ss_pred ceEEEEEeC
Q psy3053 799 KLLCLSWAG 807 (917)
Q Consensus 799 ~i~~l~~s~ 807 (917)
.+...+|+|
T Consensus 419 ~~~~p~Wsp 427 (429)
T PRK03629 419 QVKFPAWSP 427 (429)
T ss_pred CcCCcccCC
Confidence 666677765
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-10 Score=115.18 Aligned_cols=237 Identities=14% Similarity=0.193 Sum_probs=158.8
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecc------cEEEEEEeccCe
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWD------SCVVIYDVECGR 655 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~D------g~I~Iwdl~tg~ 655 (917)
..+++|..|..-++.|..+| .+||+.+.-+...+-......+.-+...--.+++| +|+.+ +.|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44589999988777776555 79999876433222222222222111111233443 34333 579999966677
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE-EECC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV-GTEA 734 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las-gs~d 734 (917)
++.++. ...+|.++.+.+ ..|++.- .+.|.||...+..... .... .........+++-+.+...||. |-.-
T Consensus 87 ~i~el~-f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l---~~~e-t~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLL---HVIE-TRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred EEEEEE-eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhhe---eeee-cccCCCceEeecCCCCceEEEcCCCcc
Confidence 777765 668899999987 4566554 6789999987542111 1111 1111223444443334445554 4556
Q ss_pred CeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCeEEEEeec---CCceEEEEEeCC
Q psy3053 735 GELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNCM-LNVYDLTTGMQVCNKVF---EEKLLCLSWAGE 808 (917)
Q Consensus 735 G~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~-I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~ 808 (917)
|.|.+-|+...+. ...+. .|.+.|.|++.+.+|..+|+++..|+ |+|||..+|..+..+.- ...+.|++++++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred ceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 9999999987655 34444 89999999999999999999999997 79999999999988764 356999999998
Q ss_pred CE-EEEEeCCCeEEEEECCCCE
Q psy3053 809 EK-VILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 809 ~~-lv~gs~dG~I~vwdl~~~~ 829 (917)
.. +++++..|++.++.++...
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCC
Confidence 66 5556667999999987643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-10 Score=127.13 Aligned_cols=324 Identities=15% Similarity=0.104 Sum_probs=223.8
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc------------
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD------------ 643 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D------------ 643 (917)
+..-.-++..+++||.|.+|++.... .|.+|.-..+..+..+. ...|..+.|+|.+++|.+-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 34456789999999999999887654 47899887766444443 3468889999999999985433
Q ss_pred ---cEEEEEEeccCeeeEEeccCCCc--ee-EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 644 ---SCVVIYDVECGRIVTELAGHEDA--IS-CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 644 ---g~I~Iwdl~tg~~i~~l~~H~~~--Vt-~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
+.+.+||+.+|..+..+.+...+ .+ -+.|+-+.+++|-. ....+.++++... ....+... -....+.
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n-~~~~p~~~-----lr~~gi~ 177 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDN-IEEHPFKN-----LRPVGIL 177 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCc-cccCchhh-----cccccee
Confidence 35999999999999998876665 55 67888887777654 3446899997322 11111111 1135678
Q ss_pred EEEEeCCCC--EEEE-----EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-----------CCCe
Q psy3053 718 CLAISKDNN--QLAV-----GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-----------NNCM 779 (917)
Q Consensus 718 ~l~~spdg~--~Las-----gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-----------~Dg~ 779 (917)
..+|+|.++ .||. +...+.+++|.+..+..+.+.. -....-..+.|.+.|.++++-. ....
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 888898743 3443 4567889999998776655443 2233445688999998876431 2356
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeCCCE---EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC
Q psy3053 780 LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK---VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW 856 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~---lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~ 856 (917)
++++++.....-......++|..++|.|.+. ++.|-....+.++|++.. ....+..........+|.+++++.++-
T Consensus 257 Lyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 257 LYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred EEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecC
Confidence 8888887444433446688999999976432 445667889999999876 444433333333344889999988776
Q ss_pred C---CeEEEEECcCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEecCcceEE
Q psy3053 857 D---SCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRLISGN------LVGAPKLYATEFYLLY 913 (917)
Q Consensus 857 D---G~I~Iwdl~tg~~l~-~l~~h~~~V~slafSpdg~~LaSgs------~DG~V~IWdl~~~ll~ 913 (917)
| |.|.+||....-.+. .+.+-. .+-+.|+|||.++.+.. .|..|+||++.+..+.
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 5 789999987555444 555433 35568999999988764 5788999999877654
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=121.00 Aligned_cols=230 Identities=19% Similarity=0.266 Sum_probs=160.3
Q ss_pred eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE-EEECC------CeEEE
Q psy3053 667 ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA-VGTEA------GELII 739 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La-sgs~d------G~I~i 739 (917)
..+++|..|...++.|..+| .++|+++.-. .......+.+.+.-+..--..++++ +|+.+ ..+.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~k-------e~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFK-------ESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchh-------hhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEE
Confidence 44589998888888777554 8999986531 1011111111111111111223443 33322 46999
Q ss_pred EECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCeEEEEeec---CCceEEEEEeCCCEEEE--
Q psy3053 740 WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT-TGMQVCNKVF---EEKLLCLSWAGEEKVIL-- 813 (917)
Q Consensus 740 wDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~-tg~~i~~~~~---~~~i~~l~~s~~~~lv~-- 813 (917)
||-...+++.++. ...+|.++.+.++ .+++.- .+.|.+|... +.+.+..+.. +....+++...+..+++
T Consensus 80 WDD~k~~~i~el~--f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 80 WDDLKERCIIELS--FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred EecccCcEEEEEE--eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 9977777777775 6789999999876 444443 5689999987 4455554443 22344444443434433
Q ss_pred EeCCCeEEEEECCCCEE--EEEEecCCCceEEE--eecCCEEEEEeCCCe-EEEEECcCCeEEEEecCC--CCCEEEEEE
Q psy3053 814 GGALGMVYLVDLIQVQL--LKQVRAHKDAVLSL--HFDNCTMLVGCWDSC-VVIYDVECGRIVTELAGH--EDAISCVAW 886 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~--i~~l~~h~~~V~si--s~dg~~Lasgs~DG~-I~Iwdl~tg~~l~~l~~h--~~~V~slaf 886 (917)
|-.-|.|++-|+...+. ...+.+|.+.|.|+ .-+|..+|++|..|+ |+|||..+|+.+.++... ...|.+++|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 45569999999987665 47788999999999 458999999999997 799999999999998753 356999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCc
Q psy3053 887 DEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl~~ 909 (917)
||++.+||++|+.|+|.|+.+..
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999864
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-11 Score=138.94 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=148.5
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-Eeccc--EE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDS--CV 646 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg--~I 646 (917)
.+.+..|...+.+.+|+|||+.|+.++.+ ..|.+|++.+++.... ........+.+|+|||+.++. .+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 34566778889999999999999987743 4699999988765432 223334557899999997764 44455 69
Q ss_pred EEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CCe--EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 647 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DCT--VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dgt--I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
++||+.+++.. .+..+.......+|+|||+.|+.++. +|. |.++|+.++. ..............+|+|
T Consensus 275 y~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--------~~~lt~~g~~~~~~~~Sp 345 (433)
T PRK04922 275 YVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--------AERLTFQGNYNARASVSP 345 (433)
T ss_pred EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--------eEEeecCCCCccCEEECC
Confidence 99999888754 45556666678999999998887764 455 5555654431 111112223445789999
Q ss_pred CCCEEEEEECCC---eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeEEEEeecC
Q psy3053 724 DNNQLAVGTEAG---ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN---CMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 724 dg~~Lasgs~dG---~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D---g~I~iwDl~tg~~i~~~~~~ 797 (917)
+|+.++..+.++ .|.+||+.+++.. .+. +........|+|||+.++..+.+ +.|.++++..+.........
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~ 422 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSAD 422 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCC
Confidence 999998876543 6999999887654 443 22234567999999998877653 45788887544322222223
Q ss_pred CceEEEEEeC
Q psy3053 798 EKLLCLSWAG 807 (917)
Q Consensus 798 ~~i~~l~~s~ 807 (917)
+.+...+|+|
T Consensus 423 g~~~~p~wsp 432 (433)
T PRK04922 423 GEVREPAWSP 432 (433)
T ss_pred CCCCCCccCC
Confidence 4455555543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=137.82 Aligned_cols=233 Identities=15% Similarity=0.154 Sum_probs=156.5
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
..|.+||.+. ...+.+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.++. ........+...+.+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCce
Confidence 4688999864 4445566677889999999999999988743 469999997652 112223344456789
Q ss_pred EeCCCCEEEE-EECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCeEEEEe
Q psy3053 721 ISKDNNQLAV-GTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NC--MLNVYDLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~Las-gs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg--~I~iwDl~tg~~i~~~ 794 (917)
|+|+|+.++. .+.+| .|++||+.+++... +. .+.......+|+|||+.++.++. +| .|+++|+.+++.....
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 9999987764 45555 59999999886543 43 34445567899999999887764 34 3777787776543322
Q ss_pred ecCCceEEEEEeCCCEEE-EEeCC-C--eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC---CeEEEEECcC
Q psy3053 795 VFEEKLLCLSWAGEEKVI-LGGAL-G--MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD---SCVVIYDVEC 867 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv-~gs~d-G--~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D---G~I~Iwdl~t 867 (917)
.........+|+|++..+ ..+.+ + .|.+||+.+++......+....-.++++||+.++..+.+ +.+.++++.
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~- 411 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD- 411 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 223334567888877543 33333 2 699999988765422222222223568899988776653 467888885
Q ss_pred CeEEEEecCCCCCEEEEEEcC
Q psy3053 868 GRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 868 g~~l~~l~~h~~~V~slafSp 888 (917)
+.....+..+.+.+...+|+|
T Consensus 412 g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceEEcccCCCCCCCCccCC
Confidence 555666666667788888887
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-11 Score=130.90 Aligned_cols=274 Identities=12% Similarity=0.124 Sum_probs=197.1
Q ss_pred ccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 622 SMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 622 ~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
....+.+..+|||+++ |+|...-.|++||+.+-.+...-.-....|.-.-.+.|-..++.-..|.+|.+..-...
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~---- 126 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR---- 126 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe----
Confidence 3455778899999975 56777889999999865543322222345666666666666777777888876543221
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
......+..-..++++.-..-|.+++....|+-++++.|+.+..+. ...+.++++..++...+|++|+.+|.|
T Consensus 127 ------hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 127 ------HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred ------eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceE
Confidence 0011112223455565544445555566689999999999988887 556899999999998899999999999
Q ss_pred EEEECCCCeEEEEeecCCc------------eEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEE-ecCCCceEEEee
Q psy3053 781 NVYDLTTGMQVCNKVFEEK------------LLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQV-RAHKDAVLSLHF 846 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~------------i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l-~~h~~~V~sis~ 846 (917)
..||.++...+..+..... ++++.|+.+|. +.+|++.|.+.+||+++.+++..- .+..-+|..+.|
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 9999998776665543332 89999998765 788999999999999998876543 234556777765
Q ss_pred ---cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 847 ---DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 847 ---dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+++--+.......++|||-.+|+....+.. +..+..+|+-|++.++++|-.++.+..|=+
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 223333344556799999999999888874 445999999999999999988887765543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-11 Score=136.59 Aligned_cols=222 Identities=12% Similarity=0.070 Sum_probs=152.6
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEec---CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-EecccE--
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGR---DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDSC-- 645 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg~-- 645 (917)
....+..|.+.+.+.+|||||+.|+.++. +..|.+||+.+++.. .+......+.+.+|+|||+.|+. .+.++.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34556778889999999999999888764 468999999887653 34444556778899999998764 455554
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
|++||+.+++. ..+..+.......+|+|||+.|+.++. +| .|.+||+.++ ...........+....|+
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--------~~~~lt~~~~~~~~~~~S 342 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS--------NPRRISFGGGRYSTPVWS 342 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--------CeEEeecCCCcccCeEEC
Confidence 77778887765 446667777788999999999887764 33 5777787654 112222234456678899
Q ss_pred CCCCEEEEEECC---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCCeEEEE
Q psy3053 723 KDNNQLAVGTEA---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN------CMLNVYDLTTGMQVCN 793 (917)
Q Consensus 723 pdg~~Lasgs~d---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D------g~I~iwDl~tg~~i~~ 793 (917)
|+|+.++..+.+ ..|.+||+.++. ...+.. ...+....|+|||+.|+..+.+ ..+.++|+..+... .
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~ 418 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-E 418 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-E
Confidence 999999887653 368889986554 344432 2356788999999998876543 25778887655442 3
Q ss_pred eecCCceEEEEEeC
Q psy3053 794 KVFEEKLLCLSWAG 807 (917)
Q Consensus 794 ~~~~~~i~~l~~s~ 807 (917)
+...+.+...+|+|
T Consensus 419 l~~~~~~~~p~Wsp 432 (435)
T PRK05137 419 VPTPGDASDPAWSP 432 (435)
T ss_pred ccCCCCccCcccCC
Confidence 33333344445544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-11 Score=136.24 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=152.0
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
..|.++|.+ |.....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.++. ........+.+.+.+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--------~~~l~~~~g~~~~~~ 246 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--------RRVVANFKGSNSAPA 246 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--------EEEeecCCCCccceE
Confidence 457777764 45455566788899999999999999887743 359999997761 112223344567899
Q ss_pred EeCCCCEEEE-EECCCeEEEE--ECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEE--ECCCCeEEEEe
Q psy3053 721 ISKDNNQLAV-GTEAGELIIW--SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVY--DLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~Las-gs~dG~I~iw--Dl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iw--Dl~tg~~i~~~ 794 (917)
|+|||+.++. .+.+|...+| |+.++. ...+. .+........|+|||+.++.++. +|...+| ++.++......
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9999998874 5667765555 555544 44444 34455667889999999886654 4555555 44455432222
Q ss_pred ecCCceEEEEEeCCCEE-EEEeCCC---eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCC---eEEEEECcC
Q psy3053 795 VFEEKLLCLSWAGEEKV-ILGGALG---MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDS---CVVIYDVEC 867 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~l-v~gs~dG---~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG---~I~Iwdl~t 867 (917)
.........+|+|++.. +..+.++ .|.+||+.+++......+....-.+++|||+.|+.++.++ .+.+.++ +
T Consensus 325 ~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 325 FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 12223445678887754 4444443 6999999887654333322233345688999988877554 3555566 4
Q ss_pred CeEEEEecCCCCCEEEEEEcCC
Q psy3053 868 GRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 868 g~~l~~l~~h~~~V~slafSpd 889 (917)
|+....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 6666667667778888899874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=132.91 Aligned_cols=232 Identities=12% Similarity=0.056 Sum_probs=155.7
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC---CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW---DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
..|.++|.+ |.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++. ......+.+.+.+.+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~ 252 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPR 252 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcE
Confidence 378888885 4445567778889999999999999988764 4689999997762 122334455677899
Q ss_pred EeCCCCEEE-EEECCCe--EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-C--CeEEEEECCCCeEEEEe
Q psy3053 721 ISKDNNQLA-VGTEAGE--LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-N--CMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~La-sgs~dG~--I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-D--g~I~iwDl~tg~~i~~~ 794 (917)
|+|||+.++ +.+.+|. |++||+.++... .+. .+........|+|||+.++.++. + ..|+++|+.++......
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 999998876 4455554 788899887654 344 34556677899999999887764 3 36888898776554333
Q ss_pred ecCCceEEEEEeCCCEEE-EEeCC---CeEEEEECCCCEEEEEEe-cCCCceEEEeecCCEEEEEeCC------CeEEEE
Q psy3053 795 VFEEKLLCLSWAGEEKVI-LGGAL---GMVYLVDLIQVQLLKQVR-AHKDAVLSLHFDNCTMLVGCWD------SCVVIY 863 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv-~gs~d---G~I~vwdl~~~~~i~~l~-~h~~~V~sis~dg~~Lasgs~D------G~I~Iw 863 (917)
..........|+|++..+ ..+.+ ..|.+||+..+.. ..+. ++...-.+++|||+.|+..+.+ ..+.++
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 334556677899877544 33322 3688889865543 2332 2222333558899988775543 257788
Q ss_pred ECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 864 DVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 864 dl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
|+..+.. ..+. ..+.+...+|+|-
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 8865554 4444 3445677788873
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-11 Score=129.80 Aligned_cols=280 Identities=14% Similarity=0.116 Sum_probs=195.9
Q ss_pred cCCcceEEEEEeCCCcEE-EEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 578 SHKEAITAVAICGEGISV-ASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~L-asgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.|...-+.|..+|||+++ |||..--.|++||+.+-.....-......|.-.-++.|-..++.-..|.+|-+..-- |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 466677889999999986 556668899999997654332222233344444455565666666667777654322 221
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
... . -...-..++++.-..-|+.++....|.-.+++.+. -+.......+.++++..++...+|++|+.+|.
T Consensus 128 y~~-R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 128 YRT-R-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-------FLNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred eee-e-cCcCCccccccCCCccEEEeecCcceEEEEccccc-------cccccccccccceeeeecCccceEEecccCce
Confidence 110 0 11233456665444455556666678888887761 11122233478999999999999999999999
Q ss_pred EEEEECCCCeeeEEecC-----CCCC-----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CceEEEE
Q psy3053 737 LIIWSLENHLMTQQLSD-----DINA-----SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE--EKLLCLS 804 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~-----~h~~-----~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--~~i~~l~ 804 (917)
|-.||.++...+..+.. .+.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++....|. -+|..+.
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 99999998776665542 1222 4999999999999999999999999999999988877765 4578888
Q ss_pred EeCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCC-ceEEEeecCCEEEEEeCCCeEEEEECcC
Q psy3053 805 WAGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKD-AVLSLHFDNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 805 ~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-~V~sis~dg~~Lasgs~DG~I~Iwdl~t 867 (917)
|.+. +..++......+++||-.+|+....+....+ .-.|.-|++.++++|-.++.+..|=+..
T Consensus 279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 8643 3466667778999999999999888764332 3345577999999999998887776543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-11 Score=135.86 Aligned_cols=223 Identities=19% Similarity=0.154 Sum_probs=147.0
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-EecccEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDSCVVI 648 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg~I~I 648 (917)
...+..+.+.+.+.+|||||+.|+.++.+ ..|.+||+.+++... +......+.+.+|+|||+.|+. .+.+|...|
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34456778899999999999999887643 359999998886543 2223345568899999998874 566777666
Q ss_pred EEe--ccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 649 YDV--ECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 649 wdl--~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
|.+ .++. ...+..+...+....|+|||+.|+..+. +|...+|.+..... ...............+|+|+|
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g------~~~~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG------AAQRVTFTGSYNTSPRISPDG 339 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC------ceEEEecCCCCcCceEECCCC
Confidence 655 4443 4556666666778899999998886664 56777776542211 111111122234467899999
Q ss_pred CEEEEEECCC---eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCeEEEEee-cCC
Q psy3053 726 NQLAVGTEAG---ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC---MLNVYDLTTGMQVCNKV-FEE 798 (917)
Q Consensus 726 ~~Lasgs~dG---~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---~I~iwDl~tg~~i~~~~-~~~ 798 (917)
+.++..+.++ .|.+||+.+++... +... .......|+|||+.|+.++.++ .+.+.+.. |....... ..+
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g 415 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTA-LTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGG 415 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEE-ccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCC
Confidence 9998877654 69999998876543 3312 2346789999999998877544 35555653 43333332 334
Q ss_pred ceEEEEEeC
Q psy3053 799 KLLCLSWAG 807 (917)
Q Consensus 799 ~i~~l~~s~ 807 (917)
.+...+|+|
T Consensus 416 ~~~~p~wsp 424 (427)
T PRK02889 416 DVREPSWGP 424 (427)
T ss_pred CCCCCccCC
Confidence 455555554
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=127.03 Aligned_cols=223 Identities=13% Similarity=0.148 Sum_probs=171.0
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce----eeeeeccccceEEEEEeCCCC-EEEEEecc--cEEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ----ERSAVLSSMTLSSLCILPDNC-TMLVGCWD--SCVVIY 649 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~----~~~~~~~~~~V~sl~~spd~~-~Lasgs~D--g~I~Iw 649 (917)
.+..++|..++... ..|++|-.+|.+.+|..+.+.. +..+. ...++..+.-++... ++|+|+.. ..+.+|
T Consensus 102 ~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 102 SLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccchhhcC--CEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeee
Confidence 34455666655443 3678888999999999885432 12222 224455565555444 56669988 889999
Q ss_pred EeccCeeeEEecc---------CCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 650 DVECGRIVTELAG---------HEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 650 dl~tg~~i~~l~~---------H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
|++..+.+..-+. -.-.++++.|-+. ...+|+++.-+.|++||...+. .+.....-...++++
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------RPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR------RPVAQFDFLENPISS 252 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC------cceeEeccccCccee
Confidence 9998865544332 1234678889877 7899999999999999998652 334444455788999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~ 798 (917)
+...|+++.+++|..-|.+..+|+++++.......+..+.|+++..+|.++++++||-|+.++|+|+.+.+.+...-..+
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 99999999999999999999999999998888555889999999999999999999999999999999988887777777
Q ss_pred ceEEEEEeCC
Q psy3053 799 KLLCLSWAGE 808 (917)
Q Consensus 799 ~i~~l~~s~~ 808 (917)
.++++.+.++
T Consensus 333 ~lt~il~~~~ 342 (412)
T KOG3881|consen 333 RLTFILLRDD 342 (412)
T ss_pred cccEEEecCC
Confidence 7777777543
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-11 Score=121.85 Aligned_cols=272 Identities=16% Similarity=0.171 Sum_probs=185.2
Q ss_pred EEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcc
Q psy3053 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 627 sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~ 705 (917)
-++|+|+|+++|+.+.- .+.|-|.++-+..+.+.. -+.|.-+.|..|..+++ .+..|+.|.+|++... .-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-------ew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-------EW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-------ee
Confidence 46799999999998865 677778777655444332 35677888988776654 5678899999998754 12
Q ss_pred eeeeccCCCceEEEEEeCCCCEE-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC--------
Q psy3053 706 LVSQLDLDNRIKCLAISKDNNQL-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-------- 776 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~spdg~~L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-------- 776 (917)
..........+.+++|||+|+.+ .+..-+-.|.+|.+.+.+....-. ....+..++|+|||++.+.++.
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHH
Confidence 22334556789999999999655 555668899999998876544332 3455688999999988776643
Q ss_pred ----------------------------CCeEEEEECCCCeEEEEeecCCceEEEEEeC-CCEEEEEeCCCeEEEEECCC
Q psy3053 777 ----------------------------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 777 ----------------------------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~ 827 (917)
++.+.+||.--...+......-.+..++|+| +..+++|+.|+.+++.+--+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 1234555543333333334445688899999 55677899999998866433
Q ss_pred CEEEEEE------------------------------------ecCC--------------------------------C
Q psy3053 828 VQLLKQV------------------------------------RAHK--------------------------------D 839 (917)
Q Consensus 828 ~~~i~~l------------------------------------~~h~--------------------------------~ 839 (917)
.+...++ ..|. .
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 2211110 0000 0
Q ss_pred ceEEEeecCCEEEEEeCC--CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 840 AVLSLHFDNCTMLVGCWD--SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 840 ~V~sis~dg~~Lasgs~D--G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
...+.++|..++++-.+. +.+.+||++..+....+. ...+|.+..|+|....|+.+.....+++|...+.
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 012224566777765443 679999998777655443 4678999999999999998888888999998764
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=125.26 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=157.5
Q ss_pred cccCCccccceeeec-cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-------------------------
Q psy3053 563 SWCDKSILEPLHFCH-SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER------------------------- 616 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~-~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~------------------------- 616 (917)
.|+-- .......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++..+..+.
T Consensus 39 ~w~lq-t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eq 116 (323)
T KOG0322|consen 39 MWVLQ-TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQ 116 (323)
T ss_pred EEEee-cCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchh
Confidence 45532 223444555 67788999998887 467888899999999976421100
Q ss_pred eeec----------------------------cccceEEEEEeC-CCC--EEEEEecccEEEEEEeccCee---------
Q psy3053 617 SAVL----------------------------SSMTLSSLCILP-DNC--TMLVGCWDSCVVIYDVECGRI--------- 656 (917)
Q Consensus 617 ~~~~----------------------------~~~~V~sl~~sp-d~~--~Lasgs~Dg~I~Iwdl~tg~~--------- 656 (917)
.... ..+.+.|..+.. +++ .+++|..+|.+.+||+.++..
T Consensus 117 ll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k 196 (323)
T KOG0322|consen 117 LLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK 196 (323)
T ss_pred heecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc
Confidence 0000 012233333221 222 567788899999999999833
Q ss_pred -eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 657 -VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 657 -i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
......|..+|.++.+.+.-+.=++|+.+..+..|++............. .-....|..+.+-||++.+|+++.||
T Consensus 197 v~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~---~lknpGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 197 VESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI---TLKNPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred cccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE---EecCCCccceEEccCCcEEeecccCC
Confidence 33345699999999998766666888888899999987653222211111 11234578899999999999999999
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
.|++|+.++..++..+. -|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus 274 RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999998 88999999999999999999999999999986
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=137.12 Aligned_cols=269 Identities=13% Similarity=0.100 Sum_probs=206.8
Q ss_pred eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 619 VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 619 ~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
......-..+.++.+|+.++.|+..|.|..+|..++++...+. -...|.++.|-.+.+++|++ ....+.|||-...
T Consensus 126 ~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt-- 201 (545)
T KOG1272|consen 126 SLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT-- 201 (545)
T ss_pred cccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--
Confidence 3334445778899999999999999999999999999888776 34678999998877777776 4668899986432
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
++ ........|..+.|-|-.-+|++++..|.+..-|+.+|+.+..+. ...+.+..++-+|-+..+-+|...|
T Consensus 202 ------El-HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 202 ------EL-HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred ------EE-eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccceEEEcCCCc
Confidence 22 223345678899999999999999999999999999999999887 5678888999999888999999999
Q ss_pred eEEEEECCCCeEEE-EeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC
Q psy3053 779 MLNVYDLTTGMQVC-NKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW 856 (917)
Q Consensus 779 ~I~iwDl~tg~~i~-~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~ 856 (917)
+|.+|...+.+++. ...|.+++.+++++++|. +++++.|..+.|||++....+.++.. .-+...++.+.+-+++.+.
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSY 352 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeec
Confidence 99999998877664 456889999999998765 67888999999999999887776654 3344455565555666666
Q ss_pred CCeEEEEE-CcCC--eEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 857 DSCVVIYD-VECG--RIVTELAGH--EDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 857 DG~I~Iwd-l~tg--~~l~~l~~h--~~~V~slafSpdg~~LaSgs~DG 900 (917)
...|.||. .-.+ ..-..+-.| .++|..+.|.|-...|-.|...|
T Consensus 353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 66799994 2221 111122223 35899999999766666555444
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-10 Score=122.75 Aligned_cols=255 Identities=16% Similarity=0.115 Sum_probs=173.3
Q ss_pred cceEEEEEeCCCC--EEEEEecccEEEEEEeccCeeeEE------eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC
Q psy3053 623 MTLSSLCILPDNC--TMLVGCWDSCVVIYDVECGRIVTE------LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 623 ~~V~sl~~spd~~--~Lasgs~Dg~I~Iwdl~tg~~i~~------l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~ 694 (917)
..+++++|.-+++ .+...+.|..+....+....+... .....++|..++... ..|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEecc
Confidence 4466667765543 344444566666666655444332 334556677766653 578899999999999987
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECC--CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEA--GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~d--G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.+..... .+ ........+..+.-++.. .++++|+.. ..+.+||+...+.+..-.... +. .|
T Consensus 134 ~~d~hss---~l-~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp-----------nD-~L 197 (412)
T KOG3881|consen 134 SGDLHSS---KL-IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP-----------ND-RL 197 (412)
T ss_pred CCccccc---cc-eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC-----------Cc-cc
Confidence 6532211 11 122233455556555544 456668988 889999999886665544211 11 11
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEE--eecC
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~si--s~dg 848 (917)
+=.|.+|+..- .-+.-++...+++++.-+.+++||.+.+ +++..+.--..+++++ .|++
T Consensus 198 -----~LrVPvW~tdi-------------~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 198 -----GLRVPVWITDI-------------RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred -----cceeeeeeccc-------------eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 22355665321 1111122446777888888888888765 4677776667777777 7799
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEE
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLY 913 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~-l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~ 913 (917)
+.|++|..-|.+..+|+++++.... +.+-.+.|+++..+|.+++|+++|-|..|||+|+++ .+++
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 9999999999999999999998876 889999999999999999999999999999999997 4443
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=124.69 Aligned_cols=341 Identities=16% Similarity=0.121 Sum_probs=238.4
Q ss_pred cccceeeeccCCcceEEEEEeCCC------------cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeC---C
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEG------------ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP---D 633 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg------------~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp---d 633 (917)
.++.++.+..|+..|+.|.|.|.. -.||++...|.|.+||...+..+..+..+..++..++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 457778889999999999998732 2578888899999999999998888999999999999976 3
Q ss_pred C-CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 634 N-CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 634 ~-~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
. ..|++-.....+.+|+..+|+.............|+.+.| |.+.+..-+..|.+.+-+.-.......+.+.......
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 3 4667777788999999999999988887777888899988 5566666666777776665333211112222222222
Q ss_pred CCC----------------c---------eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec
Q psy3053 712 LDN----------------R---------IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE 766 (917)
Q Consensus 712 h~~----------------~---------V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp 766 (917)
|.+ . ...++|+|.-+.++...-...+.++|++-..++.... -..+.+.-+.+-|
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~vlP 282 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVDVLP 282 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeEecc
Confidence 211 0 1124567766666666667789999999887777766 4455566677777
Q ss_pred CCC--EEEEEeCCCeEEEEECCC----------------CeEEEE---ee------------------------------
Q psy3053 767 DGC--RVLSCGNNCMLNVYDLTT----------------GMQVCN---KV------------------------------ 795 (917)
Q Consensus 767 dg~--~L~s~s~Dg~I~iwDl~t----------------g~~i~~---~~------------------------------ 795 (917)
+++ .|.+...||.+.+|-.+. +..... ..
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~ 362 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ 362 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence 654 588888999999986443 111000 00
Q ss_pred -------------------------------------------cCCceEEEEEe-----------CC--------CEEEE
Q psy3053 796 -------------------------------------------FEEKLLCLSWA-----------GE--------EKVIL 813 (917)
Q Consensus 796 -------------------------------------------~~~~i~~l~~s-----------~~--------~~lv~ 813 (917)
|.....|.... |. ..+++
T Consensus 363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAv 442 (1062)
T KOG1912|consen 363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAV 442 (1062)
T ss_pred hhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEe
Confidence 00001111110 00 13567
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCE-EEEEe----------CCCeEEEEECcCCeEEE--Ee-cCCCC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT-MLVGC----------WDSCVVIYDVECGRIVT--EL-AGHED 879 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~-Lasgs----------~DG~I~Iwdl~tg~~l~--~l-~~h~~ 879 (917)
|+..|+|.++|+.++...+.+..|...|.++.|-|.. +++.+ .-+.+.+-|+++|.... .+ +....
T Consensus 443 GT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des 522 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES 522 (1062)
T ss_pred ecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence 8899999999999999989999999999999886554 44432 22456777888886432 22 23467
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|..+..|..|++|+..-.|.-+.+||+.+.
T Consensus 523 pI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 523 PIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred cceeeeecccCceEEEEecccchHHHhhccc
Confidence 8999999999999999999999999999653
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=133.25 Aligned_cols=216 Identities=14% Similarity=0.170 Sum_probs=156.3
Q ss_pred eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe-ccCCCceeEEEecC--CCCEEEEEECCCeEEE
Q psy3053 614 QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDE--KRKRLISGSWDCTVRV 690 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l-~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~v 690 (917)
+.+.+.+|.+.|.++.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .||...|.++.|-| +...++||+.|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34567899999999999999999999999999999999877777665 58999999999988 4678999999999999
Q ss_pred EeCCCCCCC---ccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEE-------ecC--CCCC
Q psy3053 691 WNTGASWSH---MKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQ-------LSD--DINA 757 (917)
Q Consensus 691 Wdl~~~~~~---~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~-------l~~--~h~~ 757 (917)
+|+...... ............|...|..++..|++ +.+.++++||+++-+|++....... +.. ..--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999863211 11112223345688889999999988 8899999999999999986322111 110 1123
Q ss_pred CeEEEEEec-CCCEEEEEeCCCeEEEEECCC--------Ce----------EEEEee----------cCCc---eEEEEE
Q psy3053 758 SVNGVLFSE-DGCRVLSCGNNCMLNVYDLTT--------GM----------QVCNKV----------FEEK---LLCLSW 805 (917)
Q Consensus 758 ~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~t--------g~----------~i~~~~----------~~~~---i~~l~~ 805 (917)
...++..+| +..+|++|+.|-..++||.+. +. ++..+. .... ++-+.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 567889999 456889999999999999431 11 011110 0011 344567
Q ss_pred eCCCE-EEEEeCCCeEEEEECCCCE
Q psy3053 806 AGEEK-VILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 806 s~~~~-lv~gs~dG~I~vwdl~~~~ 829 (917)
+|+|. +++.-....|+++|+..++
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCC
Confidence 78765 5555556689999987543
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=128.40 Aligned_cols=224 Identities=13% Similarity=0.182 Sum_probs=151.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCcee----eeeeccccceEEEEE-----eCCCCEEEEEecccEEEEEEec
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQE----RSAVLSSMTLSSLCI-----LPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~~~~~~~~V~sl~~-----spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
.++....+-.|.+|+-. ....+.+|+...+... .........-.|-+| .+++--++.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 34455555566665543 2345777877643221 111111111122223 3566678889999999999876
Q ss_pred cCeeeEEec----cCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCC---------------------cce
Q psy3053 653 CGRIVTELA----GHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPS---------------------KSL 706 (917)
Q Consensus 653 tg~~i~~l~----~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~---------------------~~~ 706 (917)
..+..+.+. -....|+|+.|-|.+ ..++.+-.+|.+.++|..-......+. ..+
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 522211111 134789999998854 455666789999999753221000000 111
Q ss_pred eeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q psy3053 707 VSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 707 ~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~ 786 (917)
....-..+.|...+|+|||++||+.+.||.++|+|..+.+++..++ ..-+...|++|||||++|++|++|..|.||.+.
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 1112234578899999999999999999999999999988777766 556789999999999999999999999999999
Q ss_pred CCeEEEE-eecCCceEEEEEeC
Q psy3053 787 TGMQVCN-KVFEEKLLCLSWAG 807 (917)
Q Consensus 787 tg~~i~~-~~~~~~i~~l~~s~ 807 (917)
.++.+.. ..|.+.|..++|+|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 8888765 56788899999996
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=121.06 Aligned_cols=327 Identities=13% Similarity=0.156 Sum_probs=215.6
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC-Cceeeeee-ccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT-GRQERSAV-LSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~~~-~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
.++.++||.+.|++...-|...-+++++.|.+++||--.+ ++.-.++. ....+++++.+.++...|++|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4567889999999999988888899999999999996443 33322222 234568899999999999999999999988
Q ss_pred Eecc----CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 650 DVEC----GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 650 dl~t----g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
.+.. ....+....|...|..+-|+.....+++.+.|..+ .|.......... . .......+++.+.-.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg---~----Y~~~~~~t~~~~d~~- 166 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLG---G----YNFETPASALQFDAL- 166 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCccc---c----eEeeccCCCCceeeE-
Confidence 7653 34456667899999999999888999999999776 465433211110 0 000111112222211
Q ss_pred CEEEEEECCCeEEEEECC--CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCceE
Q psy3053 726 NQLAVGTEAGELIIWSLE--NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNKVFEEKLL 801 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~--~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~~~~~~i~ 801 (917)
+...|...|.|....+. .-.++.++. +|.+.+.+++|.+....+.+|..|..+.+||+..+. ......+...+.
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 55566666766655443 345566666 899999999999999999999999999999996443 333445566666
Q ss_pred EEEEeC-CCEEEEEeCCCeEEEEECCCCEEEE-EEe----------------------------cC-----CCceEEEee
Q psy3053 802 CLSWAG-EEKVILGGALGMVYLVDLIQVQLLK-QVR----------------------------AH-----KDAVLSLHF 846 (917)
Q Consensus 802 ~l~~s~-~~~lv~gs~dG~I~vwdl~~~~~i~-~l~----------------------------~h-----~~~V~sis~ 846 (917)
.+...+ -..+++++.||.|.+|+....+... .+. .| ...+...+.
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~ 324 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCS 324 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccc
Confidence 665543 2368899999999999987543211 000 00 011111111
Q ss_pred c-CCEEEEEeCCCeEEEEECc-------CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 847 D-NCTMLVGCWDSCVVIYDVE-------CGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 847 d-g~~Lasgs~DG~I~Iwdl~-------tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+ .....+-+..-.+++.|.- +..++.....-...|+++.+..+-..|+|+|.|..|+|||+..
T Consensus 325 s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 325 SNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1 1112222223344554421 1223444433345699999999889999999999999999864
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=120.32 Aligned_cols=318 Identities=12% Similarity=0.127 Sum_probs=210.1
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-----------ccEEEEEEe
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-----------DSCVVIYDV 651 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-----------Dg~I~Iwdl 651 (917)
=+-+.|||.|.+|+|--..| |.+|--.+-..++.+.. ..|.-+.|||..++|++-+. ...+.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999987766 67897666555555543 35778899999999998543 257999999
Q ss_pred ccCeeeEEeccC--CCcee-EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 652 ECGRIVTELAGH--EDAIS-CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 652 ~tg~~i~~l~~H--~~~Vt-~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
.+|...+.+... ...+. -..||.|++++|--.. .+|.|++..+-. .+....-.-..|....|+|.+++|
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-------lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-------LLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-------eecccccCCccccCcccCCCcceE
Confidence 999988887652 22232 4679999999987765 568899865421 111111123568889999998888
Q ss_pred EEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEECCCC-eEEE
Q psy3053 729 AVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG----------NNCMLNVYDLTTG-MQVC 792 (917)
Q Consensus 729 asgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s----------~Dg~I~iwDl~tg-~~i~ 792 (917)
|.=+.. ..+.+..+.+++.++... -+.-.-..+.|-.+|.+|+.-- .-..+.|+.++.. -++.
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 764322 356677777776666554 3333344567778888887532 1123455555433 3445
Q ss_pred EeecCCceEEEEEeCCCE-EEE--E-eCCCeEEEEECCC-C---EEEEEEecCCCceEEEeecCCEEEEEe---CCCeEE
Q psy3053 793 NKVFEEKLLCLSWAGEEK-VIL--G-GALGMVYLVDLIQ-V---QLLKQVRAHKDAVLSLHFDNCTMLVGC---WDSCVV 861 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~~~-lv~--g-s~dG~I~vwdl~~-~---~~i~~l~~h~~~V~sis~dg~~Lasgs---~DG~I~ 861 (917)
.......+..++|.|.|. +++ | ....++.+|.+.+ . +++..+......-...+|.|++++.+. ..|.+.
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceE
Confidence 566788899999998653 332 2 2236788887763 2 334444433333334488999987764 568899
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCcceE
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL------VGAPKLYATEFYLL 912 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~------DG~V~IWdl~~~ll 912 (917)
++|..-..+..+-.......+.+.|.|.|++++|++. |..-++|++++.++
T Consensus 521 F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred EEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 9998753332222222234578999999999999874 45567888887664
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=133.73 Aligned_cols=126 Identities=25% Similarity=0.338 Sum_probs=110.1
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
.|+..+.--.+.|...+|||||++||+.|.||.+||+|..+.+.+..++.--+...|++|+|||++|++|+.|.-|.||.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 34555555566999999999999999999999999999998888777776777899999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecC-----------------------------------CC-------------CEEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDE-----------------------------------KR-------------KRLISG 682 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~sp-----------------------------------d~-------------~~L~Sg 682 (917)
+..++.+..-+||.+.|+.++|.| ++ -++.++
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred eccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 999999999999999999999983 00 146788
Q ss_pred ECCCeEEEEeCCCC
Q psy3053 683 SWDCTVRVWNTGAS 696 (917)
Q Consensus 683 s~DgtI~vWdl~~~ 696 (917)
+.|..+++||+...
T Consensus 441 GqDTqlcLWDlteD 454 (636)
T KOG2394|consen 441 GQDTQLCLWDLTED 454 (636)
T ss_pred cccceEEEEecchh
Confidence 89999999998765
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-09 Score=125.41 Aligned_cols=199 Identities=14% Similarity=0.137 Sum_probs=159.1
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccce-EE---EEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTL-SS---LCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V-~s---l~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
.+.|....+.-+...++.++.+..+.+||...+.....+....... .+ +-.+++.-++++|+.-+.|.+|+....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3444555666677889999999999999998776665554433222 12 2245667799999999999999988544
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
....+.||.+.|.++.++.||.++++.|.|.++++|++++... ......+|...|..+++.|. .+++++.|-
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------~~~~~fgHsaRvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------LGCTGFGHSARVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc------cCcccccccceeEEEEeccc--eeEEeccce
Confidence 4446899999999999999999999999999999999988721 11356799999999999998 899999999
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
++++|+... ..+..+.......+..++..++...+++++.|+.+++||...
T Consensus 239 tcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 239 TCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999997654 444466645567899999999999999999999999999753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-10 Score=113.58 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=110.3
Q ss_pred EEEEEeCCCCEEEEEec----------ccEEEEEEecc-CeeeEEecc-CCCceeEEEecCCCCEEEEE--ECCCeEEEE
Q psy3053 626 SSLCILPDNCTMLVGCW----------DSCVVIYDVEC-GRIVTELAG-HEDAISCVAWDEKRKRLISG--SWDCTVRVW 691 (917)
Q Consensus 626 ~sl~~spd~~~Lasgs~----------Dg~I~Iwdl~t-g~~i~~l~~-H~~~Vt~l~~spd~~~L~Sg--s~DgtI~vW 691 (917)
..+.|+++|+.|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45678899887765433 23455665532 233344432 34579999999999987554 467899999
Q ss_pred eCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC
Q psy3053 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE---AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 692 dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~---dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg 768 (917)
|++.. .... . ....+..+.|+|+|+++++|+. .|.|.+||+++.+.+.... | ..++.++|+|+|
T Consensus 89 d~~~~--------~i~~-~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVKGK--------KIFS-F-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSPDG 155 (194)
T ss_pred cCccc--------EeEe-e-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcCCC
Confidence 98532 2222 2 2457789999999999999874 4679999999888887765 3 347899999999
Q ss_pred CEEEEEeC------CCeEEEEECCCCeEEEE
Q psy3053 769 CRVLSCGN------NCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 769 ~~L~s~s~------Dg~I~iwDl~tg~~i~~ 793 (917)
+++++++. |+.++||+.. |+.+..
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 99998874 6778899874 555544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-09 Score=117.96 Aligned_cols=304 Identities=15% Similarity=0.065 Sum_probs=192.6
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeecccc-c--------eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSM-T--------LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~-~--------V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
+..+++++.+|.+..+|..+|+.+........ . ..+....-++..++.++.+|.++.+|.++|+.+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 55788888899999999999988776554321 0 00000111356777888999999999999998877654
Q ss_pred CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcce--eeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL--VSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~--~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
......+... .+..++.++.+|.+..+|..++.......... ........++ . .+..++.++.+|.+..+
T Consensus 149 ~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 149 AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEEEE
Confidence 3322211222 23567778889999999998874222111000 0000011111 1 13457778889999999
Q ss_pred ECCCCeeeEEecCCCCC------CeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 741 SLENHLMTQQLSDDINA------SVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~~------~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
|..+|+........... ....+.-+| .+..+++++.+|.+..+|..+|+.+........ ..+... ++.++
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~-~~~vy 298 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAVD-GGRIY 298 (394)
T ss_pred EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEEE-CCEEE
Confidence 99999877654311110 011111222 345677788899999999999988766554332 223333 34888
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCC-ceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE-EEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKD-AVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC-VAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~-~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s-lafSpdg 890 (917)
+++.+|.+..+|..+++.+-....-.. ...+....+..++.++.||.+.+.|..+|+.+...+.....+.+ ... .+
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~ 376 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--AD 376 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--EC
Confidence 899999999999999987654432111 11222235677889999999999999999998877644333322 222 34
Q ss_pred CEEEEEeCCCcEEEEec
Q psy3053 891 KRLISGNLVGAPKLYAT 907 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl 907 (917)
..|+.++.||.|..++.
T Consensus 377 ~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 377 DKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEeCCceEEEEeC
Confidence 58888999999988764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=117.03 Aligned_cols=265 Identities=17% Similarity=0.089 Sum_probs=176.3
Q ss_pred CCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
.+..+++++.+|.+..+|..+|+.+............... ++..++.++.+|.+..+|..++..... ...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~--------~~~ 133 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR--------AKL 133 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee--------ecc
Confidence 3568888889999999999999988776544332223333 457888889999999999887732111 111
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe-----EEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 713 DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV-----NGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V-----~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
...+.+.... .+..++.++.+|.+..+|.++|+.+...... .... .+.... + ..++.+..++.+..+|.++
T Consensus 134 ~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~t 209 (377)
T TIGR03300 134 SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV-TPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQT 209 (377)
T ss_pred CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccC
Confidence 2222211111 2456777888999999999999988776521 1111 111111 3 4677888889999999999
Q ss_pred CeEEEEeecCCc-----------e-EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe
Q psy3053 788 GMQVCNKVFEEK-----------L-LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC 855 (917)
Q Consensus 788 g~~i~~~~~~~~-----------i-~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs 855 (917)
|+.+........ + .+.... ++.+++++.+|.++.+|..+++.+...... .......++..+++++
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTD 286 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEEC
Confidence 987655432111 0 111222 458888999999999999999887665421 1223345678888899
Q ss_pred CCCeEEEEECcCCeEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 856 WDSCVVIYDVECGRIVTELAGHED-AISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h~~-~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
.||.+..+|..+|+.+........ ...+... .+..|++++.+|.|.+||.+ +..+..+.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 999999999999988766532211 1222222 46789999999999999986 55665543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-10 Score=114.21 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=110.3
Q ss_pred eEEEEEecCCCEEEEEeC----------CCeEEEEECC-CCeEEEEee--cCCceEEEEEeCCCE-E--EEEeCCCeEEE
Q psy3053 759 VNGVLFSEDGCRVLSCGN----------NCMLNVYDLT-TGMQVCNKV--FEEKLLCLSWAGEEK-V--ILGGALGMVYL 822 (917)
Q Consensus 759 V~~v~fspdg~~L~s~s~----------Dg~I~iwDl~-tg~~i~~~~--~~~~i~~l~~s~~~~-l--v~gs~dG~I~v 822 (917)
-..+.|+++|..|++-.. -+...+|.++ .+.....+. ..++|.+++|+|++. + +.|..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346789999988775443 1234444442 223333333 345699999999764 3 33456789999
Q ss_pred EECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC---CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 823 VDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW---DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 823 wdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~---DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
||++ ++.+..+.. ..+..+ +|+|+++++|+. .|.|.+||.++.+.+.... | ..++.++|||||+++++++
T Consensus 88 yd~~-~~~i~~~~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 88 YDVK-GKKIFSFGT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EcCc-ccEeEeecC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEE
Confidence 9996 667777653 344444 889999999874 4679999999999888775 3 3478999999999999886
Q ss_pred ------CCCcEEEEecCcceEEEE
Q psy3053 898 ------LVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 898 ------~DG~V~IWdl~~~ll~~L 915 (917)
.|+.++||+.++.+++..
T Consensus 163 t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred eccceeccccEEEEEecCeEeEec
Confidence 478999999999988764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-09 Score=122.04 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=150.5
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
..|.++|...+ ....+..+...+.+.+|+|+|+.|+.++.+ ..|.+||+.++. ......+...+.+++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~ 240 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPA 240 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceE
Confidence 36888887644 345555677789999999999999987754 479999987651 122233445567789
Q ss_pred EeCCCCEEEEE-ECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeEEEEe
Q psy3053 721 ISKDNNQLAVG-TEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-C--MLNVYDLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~Lasg-s~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-g--~I~iwDl~tg~~i~~~ 794 (917)
|+|+|+.|+.. +.++ .|++||+.++.... +. .+........|+|||+.|+.++.. + .|+++|+.+++.....
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 99999877654 4444 58999998875433 33 334445577899999988876643 2 6888888877654333
Q ss_pred ecCCceEEEEEeCCCE-EEEEeCCC---eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCC---eEEEEECcC
Q psy3053 795 VFEEKLLCLSWAGEEK-VILGGALG---MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDS---CVVIYDVEC 867 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~-lv~gs~dG---~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG---~I~Iwdl~t 867 (917)
..........|++++. ++.++.++ .|.+||+.++............-.+++++|+.|+.++.++ .+.+.+. +
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~ 397 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-D 397 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-C
Confidence 3445566778888764 55555554 7999999876543222211122225688999888877654 3455554 3
Q ss_pred CeEEEEecCCCCCEEEEEEc
Q psy3053 868 GRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 868 g~~l~~l~~h~~~V~slafS 887 (917)
++....+..+.+.+..++|+
T Consensus 398 g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 398 GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CceeeECCCCCCCcCCCCCC
Confidence 55555565445555555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-09 Score=122.53 Aligned_cols=233 Identities=14% Similarity=0.167 Sum_probs=150.2
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|.++|.+.+. .+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.++. ........+.+...+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--------~~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--------REQITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--------EEEccCCCCCcCCeEE
Confidence 47777877544 45555677889999999999999877644 368889987662 1112222334557899
Q ss_pred eCCCCEEEE-EECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-C--CeEEEEECCCCeEEEEee
Q psy3053 722 SKDNNQLAV-GTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-N--CMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 722 spdg~~Las-gs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-D--g~I~iwDl~tg~~i~~~~ 795 (917)
+|+|+.++. .+.+| .|+++|+.++.... +. .+........|+|||+.++..+. + ..|+++|+.+++......
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 999998874 44455 58888998876543 43 34455667889999998877664 3 357888887776433222
Q ss_pred cCCceEEEEEeCCCEEE-EEeC-CC--eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC---CeEEEEECcCC
Q psy3053 796 FEEKLLCLSWAGEEKVI-LGGA-LG--MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD---SCVVIYDVECG 868 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv-~gs~-dG--~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D---G~I~Iwdl~tg 868 (917)
.........|+|++..+ ..+. ++ .|.++|+.+++...........-.+++|||+.++..+.+ +.+.++++. |
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g 407 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-G 407 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 22223446788776543 3332 33 588899988764332222222223668899998776654 346777774 4
Q ss_pred eEEEEecCCCCCEEEEEEcCC
Q psy3053 869 RIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpd 889 (917)
.....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 444556555667788888873
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=114.91 Aligned_cols=310 Identities=15% Similarity=0.189 Sum_probs=197.1
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCc-----eeeeeecc------------ccceEEEEEeCCCC--EEEEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGR-----QERSAVLS------------SMTLSSLCILPDNC--TMLVG 640 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~~~~~------------~~~V~sl~~spd~~--~Lasg 640 (917)
.+-|.+|.|...|.+||||+.+|.|.++.-.... ....++.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999999754322 11222222 24577888988654 67778
Q ss_pred ecccEEEEEEeccCeeeE-----------------------------------Ee-ccCCCceeEEEecCCCCEEEEEEC
Q psy3053 641 CWDSCVVIYDVECGRIVT-----------------------------------EL-AGHEDAISCVAWDEKRKRLISGSW 684 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~-----------------------------------~l-~~H~~~Vt~l~~spd~~~L~Sgs~ 684 (917)
+.|.+|++|.+....... .+ .+|+--|.++.++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999875321100 00 25888899999999998888864
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeecc-----CCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeE----Eec--
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLD-----LDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQ----QLS-- 752 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~----~l~-- 752 (917)
|-.|.+|+++-... ...++.... ...-|++..|+|.. +.++-++..|+|++.|++...+.- .+.
T Consensus 184 dLRINLWnlei~d~----sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQ----SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ceeeeeccccccCC----ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 88999999865421 112222222 23457888999964 778888999999999998532211 111
Q ss_pred ---------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCeEEEEeecC-------------Cc---eEEEEEe
Q psy3053 753 ---------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT-TGMQVCNKVFE-------------EK---LLCLSWA 806 (917)
Q Consensus 753 ---------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~-tg~~i~~~~~~-------------~~---i~~l~~s 806 (917)
...-..|..+.|+++|+++++-+. -+|++||+. ..+++...+.. .. -..++|+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 012247889999999999998653 489999993 44444443321 11 2346777
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCEE-EEEEecCCCc--eEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 807 GEE-KVILGGALGMVYLVDLIQVQL-LKQVRAHKDA--VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 807 ~~~-~lv~gs~dG~I~vwdl~~~~~-i~~l~~h~~~--V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
+++ .+++|+.....+++++..|.. ..++...... ..++ ...+.+.+++......+|- ..+. ....|.
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~-~k~~~V~~~g~r~~~~~~v-------d~ld-f~kkil 409 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV-LKLRLVSSSGKRKRDEISV-------DALD-FRKKIL 409 (433)
T ss_pred CCcceEecccccceEEEecCCCCcceeecccccccCCccccc-ccceeeecCCCcccccccc-------chhh-hhhHHH
Confidence 654 678999999999999766643 2223222111 1111 1223344444443322221 0111 223466
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEE
Q psy3053 883 CVAWDEKRKRLISGNLVGAPKLY 905 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG~V~IW 905 (917)
..+|+|..+.+|.+..+. +.|+
T Consensus 410 h~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 410 HTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred hhccCCccceeeeeecCc-eEEe
Confidence 679999999998887664 4444
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-07 Score=106.35 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=175.7
Q ss_pred EEEEecc----cEEEEEEe--ccCeeeEEe-ccCCCceeEEEecCCCCEEEEEEC----CCeEEEEeCCCCCCCccCCcc
Q psy3053 637 MLVGCWD----SCVVIYDV--ECGRIVTEL-AGHEDAISCVAWDEKRKRLISGSW----DCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 637 Lasgs~D----g~I~Iwdl--~tg~~i~~l-~~H~~~Vt~l~~spd~~~L~Sgs~----DgtI~vWdl~~~~~~~~~~~~ 705 (917)
+++|+.. +.|.+|++ ++++....- ..-....+.++++|++++|.++.. +|.|..|++....... ..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L---~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL---TL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE---EE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee---EE
Confidence 4556655 68999988 445442211 123455678899999999999887 4789999876541111 11
Q ss_pred eeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCC-CeeeEE---ec---------CCCCCCeEEEEEecCCCEE
Q psy3053 706 LVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLEN-HLMTQQ---LS---------DDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~-~~~~~~---l~---------~~h~~~V~~v~fspdg~~L 771 (917)
+............++++|++++++++. .+|.+.++++.. +..... .. ........++.++|+|+++
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 112222455677899999999998887 489999999987 433322 11 0123567899999999988
Q ss_pred EEEeC-CCeEEEEECCCCe--EEE----EeecCCceEEEEEeCCCE--EEEEeCCCeEEEEECC--CCE--EEEEEecC-
Q psy3053 772 LSCGN-NCMLNVYDLTTGM--QVC----NKVFEEKLLCLSWAGEEK--VILGGALGMVYLVDLI--QVQ--LLKQVRAH- 837 (917)
Q Consensus 772 ~s~s~-Dg~I~iwDl~tg~--~i~----~~~~~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~--~~~--~i~~l~~h- 837 (917)
+++.. ...|.+|++.... ... ........+.+.+++++. +++.-.++.|.++++. ++. .+..+...
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 87653 4579999987654 322 234456688999998864 3455567899999988 443 33333221
Q ss_pred ---CC--ce--EEEeecCCEEEEEe-CCCeEEEEECc--CCe--EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEE
Q psy3053 838 ---KD--AV--LSLHFDNCTMLVGC-WDSCVVIYDVE--CGR--IVTELAGHEDAISCVAWDEKRKRLISGN-LVGAPKL 904 (917)
Q Consensus 838 ---~~--~V--~sis~dg~~Lasgs-~DG~I~Iwdl~--tg~--~l~~l~~h~~~V~slafSpdg~~LaSgs-~DG~V~I 904 (917)
.+ .. ..+++||++|+++. .+++|.+|++. +|+ .+..+.........++++|+|++|+++. .++.|.+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 11 23 34488999988766 46789999983 343 3444444445579999999999999876 6678999
Q ss_pred EecC
Q psy3053 905 YATE 908 (917)
Q Consensus 905 Wdl~ 908 (917)
|+++
T Consensus 319 f~~d 322 (345)
T PF10282_consen 319 FDID 322 (345)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=123.46 Aligned_cols=199 Identities=15% Similarity=0.172 Sum_probs=138.1
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-eccc--EEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDS--CVV 647 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg--~I~ 647 (917)
+.+..+...+.+.+|+|||+.|+.++.+ ..|.+|++.+++.... ......+.+++|+||++.|+.. +.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455677789999999999999887654 4799999988765432 2344456678999999877654 4344 588
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
+|++.++... .+..+.......+|+|+++.|+.++. ++ .|.++|+.++ .......+...+...+|+|+
T Consensus 262 ~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--------~~~~l~~~~~~~~~~~~spd 332 (417)
T TIGR02800 262 VMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--------EVRRLTFRGGYNASPSWSPD 332 (417)
T ss_pred EEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--------CEEEeecCCCCccCeEECCC
Confidence 8898877543 34445555667899999998877664 33 5667776554 12222234456678899999
Q ss_pred CCEEEEEECCC---eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEC
Q psy3053 725 NNQLAVGTEAG---ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC---MLNVYDL 785 (917)
Q Consensus 725 g~~Lasgs~dG---~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---~I~iwDl 785 (917)
|+.++.++.++ .|.+||+.++... .+. . ........|+|+|+.|+.++.++ .+.+.+.
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~-~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDGGGER-VLT-D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCCCCeE-Ecc-C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 99999988776 7999999886543 332 1 12344568999999988877654 3555554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-07 Score=104.07 Aligned_cols=291 Identities=13% Similarity=0.138 Sum_probs=181.3
Q ss_pred EEEEecC----CceEEEec--cCCceeeee-eccccceEEEEEeCCCCEEEEEec----ccEEEEEEeccC--ee--eEE
Q psy3053 595 VASVGRD----AMLKIHSL--KTGRQERSA-VLSSMTLSSLCILPDNCTMLVGCW----DSCVVIYDVECG--RI--VTE 659 (917)
Q Consensus 595 Lasgs~D----g~I~IWd~--~t~~~~~~~-~~~~~~V~sl~~spd~~~Lasgs~----Dg~I~Iwdl~tg--~~--i~~ 659 (917)
++.|+.. +.|.+|++ ++++....- .......+.++++|++++|.++.. +|.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445544 67888877 334332111 112334567889999999998876 579999998864 33 333
Q ss_pred eccCCCceeEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceee--------eccCCCceEEEEEeCCCCEEEE
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVS--------QLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~--------~~~h~~~V~~l~~spdg~~Las 730 (917)
..........++++|++++|+++.. +|+|.++++.......... .... .........++.++|+|+++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~-~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV-QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE-EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee-eecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3323445668999999999999884 8999999997742111110 0110 0123455789999999998887
Q ss_pred EEC-CCeEEEEECCCCe--e--eEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC--CCeEE--EEeec----
Q psy3053 731 GTE-AGELIIWSLENHL--M--TQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT--TGMQV--CNKVF---- 796 (917)
Q Consensus 731 gs~-dG~I~iwDl~~~~--~--~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~--tg~~i--~~~~~---- 796 (917)
... ...|.+|++.... . ...+........+.++|+|+|+++.+.. .++.|.++++. ++... .....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 653 3579999987654 3 2233335667789999999999887665 47789999887 55332 22221
Q ss_pred -C--CceEEEEEeCCCEEE--EEeCCCeEEEEECC--CC--EEEEEEecCCCceEEE--eecCCEEEEEe-CCCeEEEEE
Q psy3053 797 -E--EKLLCLSWAGEEKVI--LGGALGMVYLVDLI--QV--QLLKQVRAHKDAVLSL--HFDNCTMLVGC-WDSCVVIYD 864 (917)
Q Consensus 797 -~--~~i~~l~~s~~~~lv--~gs~dG~I~vwdl~--~~--~~i~~l~~h~~~V~si--s~dg~~Lasgs-~DG~I~Iwd 864 (917)
. .....+.+++++..+ +....+.|.+|++. ++ +.+..+.........+ +++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1 247788899887543 34456789999983 23 4444554433334444 77999998887 467899987
Q ss_pred C--cCCeEEEEec-CCCCCEEEEEE
Q psy3053 865 V--ECGRIVTELA-GHEDAISCVAW 886 (917)
Q Consensus 865 l--~tg~~l~~l~-~h~~~V~slaf 886 (917)
+ ++|.+...-. ..-....||.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 6 5676554432 12334566655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-09 Score=121.58 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=135.4
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-eccc--EEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDS--CVV 647 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg--~I~ 647 (917)
+.+..+...+.+.+|||||+.|+..+.+ ..|.+|++.+++.... ......+...+|+|||+.|+.. +.+| .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677889999999999999877643 3688899988765432 2223345578999999988754 4444 688
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
+||+++++.. .+..+........|+|||+.|+..+. +| .|.++++.++. ..............+|+|+
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--------~~~lt~~~~~~~~~~~Spd 341 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--------AERVTFVGNYNARPRLSAD 341 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--------EEEeecCCCCccceEECCC
Confidence 8899887654 45556666778899999998876653 34 56666765541 1111111223345789999
Q ss_pred CCEEEEEECC-C--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCC
Q psy3053 725 NNQLAVGTEA-G--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN---CMLNVYDLTTG 788 (917)
Q Consensus 725 g~~Lasgs~d-G--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D---g~I~iwDl~tg 788 (917)
|+.++..+.+ | .|.++|+.+++.. .+... .......|+|||+.++.++.+ ..+.+++...+
T Consensus 342 g~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 342 GKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCEEEEEEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9999877653 3 5888999887643 33312 222356899999999877654 34677777543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.9e-09 Score=119.56 Aligned_cols=232 Identities=14% Similarity=0.143 Sum_probs=148.0
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC-C--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-C--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-g--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.+.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.++. ..............+|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--------~~~lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--------REKVTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--------eEEecCCCCCcCCeeE
Confidence 57777765543 34555677789999999999998876543 3 58888887652 1111122233456899
Q ss_pred eCCCCEEEE-EECCCe--EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCeEEEEee
Q psy3053 722 SKDNNQLAV-GTEAGE--LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NC--MLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 722 spdg~~Las-gs~dG~--I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg--~I~iwDl~tg~~i~~~~ 795 (917)
+|||+.|+. .+.+|. |+++|+.+++.. .+. .+.......+|+|||+.++..+. ++ .|.++|+.+++......
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 999998765 455664 888899877654 333 34455677899999998877654 33 57777887776443221
Q ss_pred cCCceEEEEEeCCCE-EEEEe-CCC--eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC-C--eEEEEECcCC
Q psy3053 796 FEEKLLCLSWAGEEK-VILGG-ALG--MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD-S--CVVIYDVECG 868 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~-lv~gs-~dG--~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D-G--~I~Iwdl~tg 868 (917)
........+|+|++. ++..+ .++ .|.++|+.+++...........-.+++|||+.|+..+.+ | .+.+++. +|
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G 426 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DG 426 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CC
Confidence 222234467887764 33333 334 566778887764322222122223568899987776543 3 3677776 56
Q ss_pred eEEEEecCCCCCEEEEEEcC
Q psy3053 869 RIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSp 888 (917)
.....+..+.+.+...+|+|
T Consensus 427 ~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 427 RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CceEECcCCCCCcCCCccCC
Confidence 66777776667788889987
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-09 Score=119.02 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=141.3
Q ss_pred eeccCCcceEEEEEeCCCcE--E-EEEecCC--ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-----cc
Q psy3053 575 FCHSHKEAITAVAICGEGIS--V-ASVGRDA--MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-----DS 644 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~--L-asgs~Dg--~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-----Dg 644 (917)
.+..+...+.+-+|||||+. + ++...+| .|.+.++.+++..+... ..+.....+|+|||+.|+..+. +.
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCCEEEEEECCCCCcce
Confidence 34445566778899999975 2 2444444 46677887775443322 3334456789999998887653 22
Q ss_pred EEEEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 645 CVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 645 ~I~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
.+.+|++..+ +..+...++.+.....+|+|||+.|+..+ .+|...+|.+..... .............+...+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~----g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE----GQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc----ccceEEeccCCCCcccee
Confidence 3444676653 33333333334557789999999888766 567666665422100 001122223345667889
Q ss_pred EeCCCCEEEEEECC---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCeEEEEe
Q psy3053 721 ISKDNNQLAVGTEA---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~Lasgs~d---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwDl~tg~~i~~~ 794 (917)
|+|||+.|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..+. ...|.++|+.+++.....
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 99999988876543 469999999887644332 2345678999999998876543 356888898877655444
Q ss_pred ecCCceEEEEEeC
Q psy3053 795 VFEEKLLCLSWAG 807 (917)
Q Consensus 795 ~~~~~i~~l~~s~ 807 (917)
...+.+...+|+|
T Consensus 412 ~~~g~~~~p~Ws~ 424 (428)
T PRK01029 412 IGSGEKRFPSWGA 424 (428)
T ss_pred cCCCcccCceecC
Confidence 4444455566654
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=114.45 Aligned_cols=248 Identities=21% Similarity=0.317 Sum_probs=189.2
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
....++||.+.|++...-|...-+++++.|.++++|--+....... ........+++++.+.++...|++|-..|
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-----sI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-----SIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-----hhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 4566789999999999888888999999999999996444311111 11223467889999999999999999999
Q ss_pred eEEEEECCC----CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 736 ELIIWSLEN----HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 736 ~I~iwDl~~----~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
++.-+.+.. ...++... .|...+..+.|+....++++++.|..+.---.+.+..+....+.....++.++-. ..
T Consensus 91 tvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~ 168 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YA 168 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EE
Confidence 999887643 23333443 7889999999999999999999998776655566655544333333333333322 55
Q ss_pred EEEeCCCeEEEEEC--CCCEEEEEEecCCCceEEEeec--CCEEEEEeCCCeEEEEECcCCe-EEEEecCCCCCEEEEEE
Q psy3053 812 ILGGALGMVYLVDL--IQVQLLKQVRAHKDAVLSLHFD--NCTMLVGCWDSCVVIYDVECGR-IVTELAGHEDAISCVAW 886 (917)
Q Consensus 812 v~gs~dG~I~vwdl--~~~~~i~~l~~h~~~V~sis~d--g~~Lasgs~DG~I~Iwdl~tg~-~l~~l~~h~~~V~slaf 886 (917)
.+|...|.|..-.+ ....++.++.+|.+.+++++++ .+.+.+|..|.+|.+||+.-++ ...++.+|.+.|..+..
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 66777777766654 4556888999999999999775 5679999999999999997554 34578899999999998
Q ss_pred cCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 887 DEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+--+.|++++.||.|.+|+.+-.
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhheeeeeccCCCeEEEEeccce
Confidence 888899999999999999999754
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-07 Score=102.06 Aligned_cols=265 Identities=12% Similarity=0.055 Sum_probs=162.2
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC----------CCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW----------DCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~----------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
++|.+.|.++++.+..+..-..+- .+ ++||++.|+.+.. +..|.+||..+..................
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988887544433 24 9999998887765 78999999988721100000000000012
Q ss_pred CceEEEEEeCCCCEEEEEE-C-CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCeE
Q psy3053 714 NRIKCLAISKDNNQLAVGT-E-AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT-TGMQ 790 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs-~-dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~-tg~~ 790 (917)
.....++++|||+++.+.. . +..|.+.|+.+++.+.++.. .+...-...++++.. + -+.||......+. +|+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~-~-~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFF-M-HCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccE-E-EeecCceEEEEecCCCce
Confidence 2345789999999998776 3 68999999999999998873 222222222222222 1 1234433332221 2221
Q ss_pred E-EEeec--C--CceEE-EEEeC-CCEEEEEeCCCeEEEEECCCC-----EEEEEEecC-------CC--ceEEEeecCC
Q psy3053 791 V-CNKVF--E--EKLLC-LSWAG-EEKVILGGALGMVYLVDLIQV-----QLLKQVRAH-------KD--AVLSLHFDNC 849 (917)
Q Consensus 791 i-~~~~~--~--~~i~~-l~~s~-~~~lv~gs~dG~I~vwdl~~~-----~~i~~l~~h-------~~--~V~sis~dg~ 849 (917)
. ..... . ..+.. -.+.+ ++..+..+..|.|.+.|+... .....+... .+ ...+++++++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 1 11111 1 00000 01222 455555555599999996443 223222111 11 1356688888
Q ss_pred EEEEEe----------CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecCcc-eEEEE
Q psy3053 850 TMLVGC----------WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGN-LVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 850 ~Lasgs----------~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~-~LaSgs-~DG~V~IWdl~~~-ll~~L 915 (917)
.+++.. ..+.|.++|..+++.+..+.. ...+..++++||++ .|++.. .++.|.+.|+.+. .+.++
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 877743 225799999999999998874 45789999999999 888666 6888999999755 55554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-09 Score=119.97 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=137.9
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecC-C--ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-EecccE--EE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRD-A--MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDSC--VV 647 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~D-g--~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg~--I~ 647 (917)
+.+..+...+.+..|||||+.|+.++.+ + .|.+||+.+++.... ..........+|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3445567788999999999988876543 3 588889887765332 222223456789999998875 455664 77
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CCe--EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DCT--VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dgt--I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
++|+.+++. ..+..+.......+|+||++.|+..+. ++. |.++|+.++. ..............+|+|+
T Consensus 290 ~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--------~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 290 VVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--------VSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--------EEEEecCCCCCcCeeECCC
Confidence 888887764 345556666788999999998876553 444 5555665541 1111112222345789999
Q ss_pred CCEEEEEECC-C--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCeEEEEeec-C
Q psy3053 725 NNQLAVGTEA-G--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-C--MLNVYDLTTGMQVCNKVF-E 797 (917)
Q Consensus 725 g~~Lasgs~d-G--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-g--~I~iwDl~tg~~i~~~~~-~ 797 (917)
|+.++..+.+ + .|.++|+.+++.. .+... .......|+|||+.|+..+.+ + .+.+++.. |........ .
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~ 436 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQ 436 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCC
Confidence 9988876553 3 4666788887643 33312 122345799999988876543 3 36777764 444333332 3
Q ss_pred CceEEEEEeC
Q psy3053 798 EKLLCLSWAG 807 (917)
Q Consensus 798 ~~i~~l~~s~ 807 (917)
+.+...+|+|
T Consensus 437 g~~~~p~Wsp 446 (448)
T PRK04792 437 GEVKSPAWSP 446 (448)
T ss_pred CCcCCCccCC
Confidence 4455555654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-08 Score=108.44 Aligned_cols=299 Identities=13% Similarity=0.078 Sum_probs=198.7
Q ss_pred cceEEEEEeCCCcEEEEEecCC---------------ceEEEeccCCceeeeeeccccc--eE-EEEEeCCCCEEEEEec
Q psy3053 581 EAITAVAICGEGISVASVGRDA---------------MLKIHSLKTGRQERSAVLSSMT--LS-SLCILPDNCTMLVGCW 642 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg---------------~I~IWd~~t~~~~~~~~~~~~~--V~-sl~~spd~~~Lasgs~ 642 (917)
..|.-+.|||++++|.|-+..+ .+.+||..+|..+.++.....+ .. -+.|+-+++++|-- .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 4688999999999999876543 4899999999999888876655 44 57788888877654 3
Q ss_pred ccEEEEEEeccCeee-EEecc-CCCceeEEEecCCC--CEEEE-----EECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 643 DSCVVIYDVECGRIV-TELAG-HEDAISCVAWDEKR--KRLIS-----GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i-~~l~~-H~~~Vt~l~~spd~--~~L~S-----gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
...++|+++ ++... ..+.. ....|....|+|.+ ..|+. .+.++++++|.+..+. .+....-..
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-------~l~tk~lfk 222 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-------VLVTKNLFK 222 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-------eeeeeeeEe
Confidence 457899997 43321 11111 13567888888853 33443 4567899999986441 111111111
Q ss_pred CceEEEEEeCCCCEEEEEE-----------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeE
Q psy3053 714 NRIKCLAISKDNNQLAVGT-----------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCML 780 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs-----------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I 780 (917)
..-..+.|++.|+++++-. ....++++++........ . ...++|...+|.|.++.+++++ .+..+
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~ 300 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-K-DLKDPVHDFTWEPLSSRFAVISGYMPASV 300 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee-c-cccccceeeeecccCCceeEEecccccce
Confidence 2224577888887765421 124578888874333222 2 4578999999999888877655 67789
Q ss_pred EEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeC---CCeEEEEECCCCEEEE-EEecCCCceEEEeecCCEEEEEe
Q psy3053 781 NVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGA---LGMVYLVDLIQVQLLK-QVRAHKDAVLSLHFDNCTMLVGC 855 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~---dG~I~vwdl~~~~~i~-~l~~h~~~V~sis~dg~~Lasgs 855 (917)
.++|++.. +.....+..-..+.|+|.+. ++.++- .|.+.+||........ .+.+........+||++++.+..
T Consensus 301 s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 301 SVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred eecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecC
Confidence 99999866 33334444555666776544 444443 4899999998765544 77777777777799999987764
Q ss_pred C------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 856 W------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 856 ~------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
. |..|.|||+.. ..+. ..+.+.|.|.|++.-+.+.++
T Consensus 379 ts~k~~~Dn~i~l~~v~g-~~~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYG-AKVF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CCcccccCcceEEEEecC-chhh-------hhhhccccCCcccceeeccCC
Confidence 3 78899999863 3322 345567777777666655543
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=121.76 Aligned_cols=253 Identities=12% Similarity=0.135 Sum_probs=176.9
Q ss_pred eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe-ccCCCceeEEEecC--CCCEEEEEECCCeEEE
Q psy3053 614 QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDE--KRKRLISGSWDCTVRV 690 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l-~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~v 690 (917)
....+..|.+.|..+.|...|..+++|+.|..|.+||...++....+ .||...|....|-| +...+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34567789999999999999999999999999999999988776655 47988888888877 4568999999999998
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEec--CCCCC---CeEEEEE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLS--DDINA---SVNGVLF 764 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h~~---~V~~v~f 764 (917)
=.+.... ..........|.++|.-++.-|+. ..+.+++.|+.+.-+|++.+.+...+. ..+.. ....++.
T Consensus 214 s~i~~t~----~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 214 SEILETG----YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeecccc----ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 8765431 112234456799999999999965 678899999999999998875543332 12222 4667888
Q ss_pred ecCCC-EEEEEeCCCeEEEEECCCCeEEE------Ee-------ecCCceEEEEEe-CCCEEEEEeCCCeEEEEECCCCE
Q psy3053 765 SEDGC-RVLSCGNNCMLNVYDLTTGMQVC------NK-------VFEEKLLCLSWA-GEEKVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 765 spdg~-~L~s~s~Dg~I~iwDl~tg~~i~------~~-------~~~~~i~~l~~s-~~~~lv~gs~dG~I~vwdl~~~~ 829 (917)
.|... .+++++.|..+++||.+.-.... .+ ...-.|+|++++ ..+.++++-.|-
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe----------- 358 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE----------- 358 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc-----------
Confidence 88544 78889999999999876432110 00 011224444444 222344444444
Q ss_pred EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECc--CC----------eEEE-EecCCCC--CEEEEEE-cCCCCEE
Q psy3053 830 LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVE--CG----------RIVT-ELAGHED--AISCVAW-DEKRKRL 893 (917)
Q Consensus 830 ~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~--tg----------~~l~-~l~~h~~--~V~slaf-Spdg~~L 893 (917)
.|+++.-. .| ..+. .++||.. .|..+-| -|...++
T Consensus 359 -----------------------------~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyV 409 (559)
T KOG1334|consen 359 -----------------------------DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYV 409 (559)
T ss_pred -----------------------------ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceE
Confidence 44444221 11 1222 2677754 4777755 6888999
Q ss_pred EEEeCCCcEEEEecCcc
Q psy3053 894 ISGNLVGAPKLYATEFY 910 (917)
Q Consensus 894 aSgs~DG~V~IWdl~~~ 910 (917)
++|+.-|.|.||+-.+.
T Consensus 410 vSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTG 426 (559)
T ss_pred EecCccceEEEEecchh
Confidence 99999999999998754
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-07 Score=104.58 Aligned_cols=241 Identities=14% Similarity=0.093 Sum_probs=159.5
Q ss_pred EeCCCcEEEEEec----------CCceEEEeccCCceeeeeecccc-------ceEEEEEeCCCCEEEEEe-c-ccEEEE
Q psy3053 588 ICGEGISVASVGR----------DAMLKIHSLKTGRQERSAVLSSM-------TLSSLCILPDNCTMLVGC-W-DSCVVI 648 (917)
Q Consensus 588 fSpdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~~~~~~~-------~V~sl~~spd~~~Lasgs-~-Dg~I~I 648 (917)
+||||+.++.+.. +..|.+||..+++.+..+..... .-...+++|||+++.+.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 78999999999999888775432 223678999999998876 3 789999
Q ss_pred EEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE-EEEEeC-CCC
Q psy3053 649 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK-CLAISK-DNN 726 (917)
Q Consensus 649 wdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp-dg~ 726 (917)
.|+.+++.+..+.- .+...-...++++ .. +-+.||......+............. ......++. .-.+.+ +|+
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~v--f~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEV--FHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeee--ecCCccccccCCceEcCCCc
Confidence 99999999888764 2222222222222 22 22345555554443321100000000 000000000 003455 788
Q ss_pred EEEEEECCCeEEEEECCCC-----eeeEEecCC------CCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEC
Q psy3053 727 QLAVGTEAGELIIWSLENH-----LMTQQLSDD------INASVNGVLFSEDGCRVLSCG----------NNCMLNVYDL 785 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~-----~~~~~l~~~------h~~~V~~v~fspdg~~L~s~s----------~Dg~I~iwDl 785 (917)
.+.+... |.|.+.|+... .....+... ..+.+..++++++++.+.+.. ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 7777666 99999996443 222222211 234455699999999988843 2257999999
Q ss_pred CCCeEEEEeecCCceEEEEEeCCCE-EEE--EeCCCeEEEEECCCCEEEEEE
Q psy3053 786 TTGMQVCNKVFEEKLLCLSWAGEEK-VIL--GGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 786 ~tg~~i~~~~~~~~i~~l~~s~~~~-lv~--gs~dG~I~vwdl~~~~~i~~l 834 (917)
.+++.+..+.....+..+++++++. ++. ...++.|.++|..+++.++++
T Consensus 287 ~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999999999999999999876 443 335788999999999999888
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-08 Score=115.49 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=126.3
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE-EeccCC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHE 664 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~-~l~~H~ 664 (917)
+.++++.-++++|+.-+.|.+|+.........+.+|.+.+.++.++-||+++++.|.|.++++|++++++... ..-+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 4456677789999999999999987444444688999999999999999999999999999999999988766 677899
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC-CCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL-DNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
..|..+++.|+ .++|++.|.++++|+.... .+....+| ...+..++..++...+++++.||.+++||+.
T Consensus 219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~--------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGT--------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceeEEEEeccc--eeEEeccceEEEEEecccc--------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99999999996 9999999999999976543 22233333 4568999999999999999999999999875
Q ss_pred C
Q psy3053 744 N 744 (917)
Q Consensus 744 ~ 744 (917)
.
T Consensus 289 ~ 289 (967)
T KOG0974|consen 289 G 289 (967)
T ss_pred c
Confidence 3
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=114.81 Aligned_cols=188 Identities=16% Similarity=0.134 Sum_probs=147.8
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeecc---ccceEEEEE--------------------eCCCCEEEEEecccEE
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLS---SMTLSSLCI--------------------LPDNCTMLVGCWDSCV 646 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~---~~~V~sl~~--------------------spd~~~Lasgs~Dg~I 646 (917)
|.+.++|....||.+++|+...++..+.+... .+...+..| +.|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678899999999999999988776554321 122223333 1234578889999999
Q ss_pred EEEEeccCeeeEEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 647 VIYDVECGRIVTELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
.+|++..|+....+. .|.+.|.++.++.+-..|.|++.|+.+..|+.... ............+.+++++||
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-------~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-------VIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-------eeeeeeccCCCccceEEEcCC
Confidence 999999999988876 59999999999999999999999999999998765 223334455667899999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC-----CCEEEEE-eCCCeEEEEECCC
Q psy3053 725 NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED-----GCRVLSC-GNNCMLNVYDLTT 787 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd-----g~~L~s~-s~Dg~I~iwDl~t 787 (917)
|..+++|+ +.|.+||+++++.+..+. +|.++|+++.|.-+ |.+++++ ..+..+.+|-+..
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999886 579999999999999999 99999999999886 6666654 3455567776543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-07 Score=113.22 Aligned_cols=285 Identities=14% Similarity=0.217 Sum_probs=189.5
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEE----EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC-
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIY----DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA- 695 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw----dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~- 695 (917)
....|.++.+.++...++.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+.++.++++.+-+-.=
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 34678899999999999999999999999 444332 222233457899999999999999999999888764210
Q ss_pred --------------------CCCCccCC------cc--------ee-----eeccCCCceEEEEEeCCCCEEEEEEC---
Q psy3053 696 --------------------SWSHMKPS------KS--------LV-----SQLDLDNRIKCLAISKDNNQLAVGTE--- 733 (917)
Q Consensus 696 --------------------~~~~~~~~------~~--------~~-----~~~~h~~~V~~l~~spdg~~Lasgs~--- 733 (917)
|++..... +. .. .....++.-..++|-.||.++|+.+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00000000 00 00 00114446678999999999998874
Q ss_pred C---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCeEEEEeec-----CCceEE
Q psy3053 734 A---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYDLTTGMQVCNKVF-----EEKLLC 802 (917)
Q Consensus 734 d---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwDl~tg~~i~~~~~-----~~~i~~ 802 (917)
. ..+++|+-+ |....... ...+--.+++|.|.|+++|+... ...|.+|. ++|.....+.. ...+..
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 3 469999965 65544444 44555668899999999998864 34566676 45655544443 356899
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCEEE--EEEec-CCCceEEEee---cCCEEEEEeCCCeEEEEEC----cCC----
Q psy3053 803 LSWAGEEKVILGGALGMVYLVDLIQVQLL--KQVRA-HKDAVLSLHF---DNCTMLVGCWDSCVVIYDV----ECG---- 868 (917)
Q Consensus 803 l~~s~~~~lv~gs~dG~I~vwdl~~~~~i--~~l~~-h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl----~tg---- 868 (917)
+.|+.++.+++......|.+|-..+-.-. +.+.. ....+..+.| +...|..++.+|.+..+++ ..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 99999888777776777999999886532 23322 1222333444 3455777776666655433 111
Q ss_pred ----eEEEEecC-----------------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 869 ----RIVTELAG-----------------------HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 869 ----~~l~~l~~-----------------------h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
..+..+.| -..+|.+++|++++..+++-..||.|.+|..+.
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11222111 246899999999998899999999999999643
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=120.66 Aligned_cols=268 Identities=13% Similarity=0.102 Sum_probs=181.5
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCe---------------eeEEeccCCCceeEEEecCCCCEEEEEECCC
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR---------------IVTELAGHEDAISCVAWDEKRKRLISGSWDC 686 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~---------------~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg 686 (917)
+....|+.|.....++|+|+.||.+++..+.+.. .-+++.||.+.|.-+.|+.+.+.|-|...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3457889999999999999999999999876531 1256789999999999999999999999999
Q ss_pred eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec
Q psy3053 687 TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE 766 (917)
Q Consensus 687 tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp 766 (917)
.|.+|-+-.+. ...........+.|.+++|+.+|..++....||.|.+=.++..+.-..-. .......+.|++
T Consensus 94 lIiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 94 LIIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSE 166 (1189)
T ss_pred eEEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecc
Confidence 99999986652 11111122345678999999999999999999999998887654332211 123345789999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee
Q psy3053 767 DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF 846 (917)
Q Consensus 767 dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~ 846 (917)
|.+.++.+-..|.+.++|....-.. .......++ ++|... .-+..+..+.-..++..-+-|
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c~Vn----------~tg~~s--------~~~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFER-KLEKDCEVN----------GTGIFS--------NFPTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHH-hhhhceEEe----------eeeeec--------CCCccccceeeccCccccCCC
Confidence 9999998888999999997543110 000000000 011100 001112222223444555567
Q ss_pred cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEecCcceEEEEe
Q psy3053 847 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV---------GAPKLYATEFYLLYVLT 916 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D---------G~V~IWdl~~~ll~~Lt 916 (917)
|...++++-..|.+.+..-.+...-..+. ..-.|....|+++|..||.+|.| +.|.++.--+..+.+|.
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlk 305 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLK 305 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEe
Confidence 88899999999998887554333222222 12568889999999999998854 35666666555555543
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-08 Score=109.96 Aligned_cols=295 Identities=14% Similarity=0.107 Sum_probs=193.9
Q ss_pred ceEEEEEeCCCcEEEEE-----ecC-----CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 582 AITAVAICGEGISVASV-----GRD-----AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasg-----s~D-----g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
.+.++.|||.|++|.|- ..+ -.+++|+++++.....+......-++..|++|..+.| --..+.+++|+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence 78899999999988753 122 3467999998655444444333336788888875432 233567999998
Q ss_pred ccCeeeEEeccCCCceeEEEecCCC--CEEEE-----EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKR--KRLIS-----GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~--~~L~S-----gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
.+-+.+.. .-|...|+.+.++|.+ ..+|+ .|.-+.|++|......... ....... ....-..+.|++-
T Consensus 154 ~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~--~~a~ksF--Fkadkvqm~WN~~ 228 (566)
T KOG2315|consen 154 GSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ--PVANKSF--FKADKVQMKWNKL 228 (566)
T ss_pred CCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc--hhhhccc--cccceeEEEeccC
Confidence 76433221 2367789999999863 34443 3455689999876321100 0011111 1222345778876
Q ss_pred CCE-EEEEE--C---------CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeE
Q psy3053 725 NNQ-LAVGT--E---------AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGMQ 790 (917)
Q Consensus 725 g~~-Lasgs--~---------dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~~ 790 (917)
|.- |+.++ - +.++++.++........+. ..++|.++.|+|+|+.++++. .-.++.++|++. .+
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~ 305 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KP 305 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CE
Confidence 653 22222 2 2368888887545444443 679999999999998776654 456799999863 34
Q ss_pred EEEeecCCceEEEEEeCCCEEE-EEe---CCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC------CCeE
Q psy3053 791 VCNKVFEEKLLCLSWAGEEKVI-LGG---ALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW------DSCV 860 (917)
Q Consensus 791 i~~~~~~~~i~~l~~s~~~~lv-~gs---~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~------DG~I 860 (917)
+..+ ..++-+++-|+|.|.++ .++ -.|.+-+||+.+.+++..+......+...+|||+++++++. |+.+
T Consensus 306 v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 306 VFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred eEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCe
Confidence 3332 34566788889877644 333 34899999999999999999888888888999999999875 6889
Q ss_pred EEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 861 VIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
+||+.. |..+....-.+ ....+.|-|
T Consensus 385 Kiwhyt-G~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 385 KIWHYT-GSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred EEEEec-CceeehhhhhH-hHhheeeee
Confidence 999975 66655432111 466677765
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=119.54 Aligned_cols=283 Identities=13% Similarity=0.160 Sum_probs=190.3
Q ss_pred eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCe
Q psy3053 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCT 687 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt 687 (917)
+..+.+|...|..++-..+.+.+++++.|.+|++|.+.. ..+..+++.|+.+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456778888888887777888999999999999999863 24677888999999999999887777764 899
Q ss_pred EEEEeCCCCCCCccCCcceee--eccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeeeEEec----CCCCCCeE
Q psy3053 688 VRVWNTGASWSHMKPSKSLVS--QLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLENHLMTQQLS----DDINASVN 760 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~~~~~~--~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~----~~h~~~V~ 760 (917)
|.+||.--+.. ..+... ..+..+.|.|+. +-+...+++| +...+|+++|.+.+.....++ .+.++.+.
T Consensus 806 iHlWDPFigr~----Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 806 IHLWDPFIGRL----LAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred ceeecccccch----hHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 99999654410 011111 112223344432 1234455555 678899999999887665554 23456789
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEE-EECCCCEEEEEEecCC
Q psy3053 761 GVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYL-VDLIQVQLLKQVRAHK 838 (917)
Q Consensus 761 ~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~v-wdl~~~~~i~~l~~h~ 838 (917)
+++..+.|++++++-.+|++.+.|.++|+.+.... .......++.-.+..++....|..+.+ |...++....+.+...
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 99999999999999999999999999998775433 222233333333435566666777777 8777776555544333
Q ss_pred CceEEEeecCCEEEEEeCCCeEEEEECcC----CeEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3053 839 DAVLSLHFDNCTMLVGCWDSCVVIYDVEC----GRIVTELA--GHEDAISCVAWDEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 839 ~~V~sis~dg~~Lasgs~DG~I~Iwdl~t----g~~l~~l~--~h~~~V~slafSpdg~~LaSgs~DG~V~I 904 (917)
.+..-+..-|..++++.....+.+|--.. ...+..+. ...+..++++--|-..-+..|...|.|.+
T Consensus 961 epahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 33322333456677777777777774211 11111221 23456788888887777888888888875
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-08 Score=109.77 Aligned_cols=276 Identities=12% Similarity=0.150 Sum_probs=194.8
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCc---------------eeeeeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGR---------------QERSAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---------------~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
....|++|..+..++|+||.||.+++-.+.+.. .-+++.+|+..|.-+.|..+...|-++..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 456799999999999999999999999876422 12467789999999999999999999999999
Q ss_pred EEEEEeccCeeeEEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 646 VVIYDVECGRIVTELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
|.+|-+-.|.-...+. ...+.|.+++|..+|..+..+-.||.|.+=.++...--. +.+ .......+.|++
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg---KeL-----kg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG---KEL-----KGQLLAHVLWSE 166 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc---hhc-----chheccceeecc
Confidence 9999987775433322 345679999999999999999999999887776541000 011 112244789999
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-------eeEEec---CCCCCCeEEEEEe--------cCCCEEEEEeCCCeEEEEEC
Q psy3053 724 DNNQLAVGTEAGELIIWSLENHL-------MTQQLS---DDINASVNGVLFS--------EDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 724 dg~~Lasgs~dG~I~iwDl~~~~-------~~~~l~---~~h~~~V~~v~fs--------pdg~~L~s~s~Dg~I~iwDl 785 (917)
|.+.++.+-.+|.+.++|....- +..... ...+..+..+.|. ||...++++-..|.+.+-.-
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 99999999999999999976431 111111 1122335556654 47788999999999988766
Q ss_pred CCCeEEEEeecCCceEEEEEeCCCEEEE-EeCC---------CeEEEEECCCCEEEEEEecCCCceEEEeecCCEE-EEE
Q psy3053 786 TTGMQVCNKVFEEKLLCLSWAGEEKVIL-GGAL---------GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTM-LVG 854 (917)
Q Consensus 786 ~tg~~i~~~~~~~~i~~l~~s~~~~lv~-gs~d---------G~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~L-asg 854 (917)
.+...-..+..+-.+....|+++|.+++ ++.+ +.|.++. .-|+.+.+++.....|++++|.|.-| ++-
T Consensus 247 eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 247 ENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred cCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEE
Confidence 5554444455566788889998877554 3322 2444443 45677888888888999999966532 222
Q ss_pred eCCCeEEEEEC
Q psy3053 855 CWDSCVVIYDV 865 (917)
Q Consensus 855 s~DG~I~Iwdl 865 (917)
..|+.|.+=++
T Consensus 326 AvdsfiyfanI 336 (1189)
T KOG2041|consen 326 AVDSFIYFANI 336 (1189)
T ss_pred EecceEEEEee
Confidence 34555555444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-07 Score=110.61 Aligned_cols=328 Identities=13% Similarity=0.124 Sum_probs=200.7
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEecc-------------C----------Cceeeeeec-------------
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLK-------------T----------GRQERSAVL------------- 620 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~-------------t----------~~~~~~~~~------------- 620 (917)
..-...|.|++||||+..|+.+..+|++.+-+.. - |+....+.+
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 3346789999999999999999988888765421 0 111111111
Q ss_pred -----------cccceEEEEEeCCCCEEEEEec---c---cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE
Q psy3053 621 -----------SSMTLSSLCILPDNCTMLVGCW---D---SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS 683 (917)
Q Consensus 621 -----------~~~~V~sl~~spd~~~Lasgs~---D---g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs 683 (917)
....-..++|-.||.++|+.+. . ..++||+-+ |....+-..-.+--.+++|.|.|+.||+..
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 1223456889999999999875 2 579999977 665555444444456789999999999887
Q ss_pred C---CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee--eEEecCCCCCC
Q psy3053 684 W---DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM--TQQLSDDINAS 758 (917)
Q Consensus 684 ~---DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~ 758 (917)
. ...|.+|.-+... ...-..........|..++|++++..||+...|. |.+|...+..- .+.+.-.....
T Consensus 276 ~~~~~~~VvFfErNGLr----hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLR----HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred EcCCCcEEEEEecCCcE----eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence 5 3467777644321 1111111124466789999999999999988665 99999887642 22333223344
Q ss_pred eEEEEEecC-CCEEEEEeCCCeEEEEEC----CCC----------------eE----------------EEEeecCCceE
Q psy3053 759 VNGVLFSED-GCRVLSCGNNCMLNVYDL----TTG----------------MQ----------------VCNKVFEEKLL 801 (917)
Q Consensus 759 V~~v~fspd-g~~L~s~s~Dg~I~iwDl----~tg----------------~~----------------i~~~~~~~~i~ 801 (917)
+..+.|+|. ...|...+.+|.+..++. ..+ .. ...+..+..+.
T Consensus 351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~ 430 (928)
T PF04762_consen 351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN 430 (928)
T ss_pred CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE
Confidence 556899984 445666665555544332 111 00 12233567789
Q ss_pred EEEEeCCC-EEEEEeCCCeEEEEECCCCEE--------EEEEec----------CCCceEEEee-cC-CEEEEEeCC---
Q psy3053 802 CLSWAGEE-KVILGGALGMVYLVDLIQVQL--------LKQVRA----------HKDAVLSLHF-DN-CTMLVGCWD--- 857 (917)
Q Consensus 802 ~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~--------i~~l~~----------h~~~V~sis~-dg-~~Lasgs~D--- 857 (917)
++++++++ .+++-..+|.+.+|....... ...+.. ....+..+.+ +. ..++....+
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQ 510 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCccc
Confidence 99998764 488899999999998543211 111111 1223444443 23 333333332
Q ss_pred CeEEEEECcCCe---EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 858 SCVVIYDVECGR---IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 858 G~I~Iwdl~tg~---~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+.+.+++..... .+.....-.+.+..+...++...++.-..||.+...+.++.
T Consensus 511 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 511 SKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred ceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 578888774332 33333334556666666666655677777888886666544
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=105.76 Aligned_cols=247 Identities=14% Similarity=0.227 Sum_probs=171.3
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-----eeEEeccCC------------CceeEEEecCCCC--EEEEE
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-----IVTELAGHE------------DAISCVAWDEKRK--RLISG 682 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-----~i~~l~~H~------------~~Vt~l~~spd~~--~L~Sg 682 (917)
..-++++.|...|.+||+|..+|.|.++.-+... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3457889999999999999999999999754322 233444443 4688899988654 56677
Q ss_pred ECCCeEEEEeCCCCCCCcc------------------C----C-------cceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 683 SWDCTVRVWNTGASWSHMK------------------P----S-------KSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 683 s~DgtI~vWdl~~~~~~~~------------------~----~-------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
+.|.+|++|.+........ + . ........|.--|.+++++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8899999998765421110 0 0 00011235677789999999999888864
Q ss_pred CCeEEEEECCCCeeeEE---ecCCC-----CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEE----ee-----
Q psy3053 734 AGELIIWSLENHLMTQQ---LSDDI-----NASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCN----KV----- 795 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~---l~~~h-----~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~----~~----- 795 (917)
|=.|.+|.++-...... ++ ++ ..-|++..|+| ....++..+..|+|++-|++....... +.
T Consensus 184 dLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 66899999874332222 22 22 23578889999 466888888999999999985432111 00
Q ss_pred --------cCCceEEEEEeCCCEEEEEeCCCeEEEEEC-CCCEEEEEEecCCC------------ceE---EEee--cCC
Q psy3053 796 --------FEEKLLCLSWAGEEKVILGGALGMVYLVDL-IQVQLLKQVRAHKD------------AVL---SLHF--DNC 849 (917)
Q Consensus 796 --------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl-~~~~~i~~l~~h~~------------~V~---sis~--dg~ 849 (917)
.-..|..+.|+.+|.++.+-.--+|.+||+ ...+++.+++.|.. .|. .+++ ++.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 113467788999999988888899999999 56778877776642 221 1234 556
Q ss_pred EEEEEeCCCeEEEEECcCCeE
Q psy3053 850 TMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 850 ~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
++++|+....++++++..|..
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred eEecccccceEEEecCCCCcc
Confidence 999999999999999776653
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=119.94 Aligned_cols=246 Identities=15% Similarity=0.213 Sum_probs=179.0
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
++.+.||+..|..++--.+.+-++++|.|.+|++|.++..........+..+...|..+|.++.|-.+.+.+++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 56678999999999888788999999999999999998765555555666677889999999999998887775 4788
Q ss_pred EEEEECCCCeeeEEecC-CCCCCeEEEEEec--CCCEEE-EEeCCCeEEEEECCCCeEEEEeec------CCceEEEEEe
Q psy3053 737 LIIWSLENHLMTQQLSD-DINASVNGVLFSE--DGCRVL-SCGNNCMLNVYDLTTGMQVCNKVF------EEKLLCLSWA 806 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~-~h~~~V~~v~fsp--dg~~L~-s~s~Dg~I~iwDl~tg~~i~~~~~------~~~i~~l~~s 806 (917)
|.+||.--++++.++.. ...+.+..+..-+ +...++ .++...+|+++|.+.+........ ...++|++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999988877765542 2223333343334 333333 346788999999999877665442 2447888887
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCCCeEEE-EECcCCeEEEEecCCCCCEEE
Q psy3053 807 GEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWDSCVVI-YDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 807 ~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~DG~I~I-wdl~tg~~l~~l~~h~~~V~s 883 (917)
+.| .++++-++|.|.+.|.++|+.+..+..-.-....+ .|..+.++....|.++.+ |..-+|....+.+....+..-
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahf 965 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF 965 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh
Confidence 654 57888899999999999999998887655555555 678888888888999998 988777766555433322111
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWd 906 (917)
+ -.-|..|+++.....+.||.
T Consensus 966 l--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 966 L--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred h--hccCceeEEeccCcEEEEEe
Confidence 1 12355666666666666664
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=132.77 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=162.7
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
.+.|-..|.++.-+|...+-+||+.||.+++|....++.+..+.. ....|+.+.|+.+|+....+..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 345556778888888888999999999999999998888776653 33678899999999999999999999999987 6
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEE---CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGS---WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs---~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
+.....+.|....+...|-. ..+++++ .++.+.+||..-. +...+. ...|.+.++++++-|..+.+++|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~-----~~~s~v-~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP-----PMNSLV-HTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC-----ccccee-eeecCCCceEEEEcCcceEEEec
Confidence 67777788999999998875 6677765 4689999996543 112222 27899999999999999999999
Q ss_pred ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+.+|.|++||++..+..+.++. +. ...++++++..|.++||++..-..+..+.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999998887777662 33 45689999999999999998766655544
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=130.78 Aligned_cols=223 Identities=10% Similarity=0.126 Sum_probs=166.3
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec-cCCCceeEEE
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVA 671 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~ 671 (917)
+....+..++...-|..+.+.. .+..+-..|.++.-+|...+-++|+.||.|++|....+..+..+. +-...|+.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 3344444455555554433222 122334456777778888899999999999999998887766554 2338899999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE---ECCCeEEEEECCCCeee
Q psy3053 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG---TEAGELIIWSLENHLMT 748 (917)
Q Consensus 672 ~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg---s~dG~I~iwDl~~~~~~ 748 (917)
|+.+|+.+..+..||.+.+|..... .......|+.....+.|-. ..++++ +.++.+.+||..-....
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~pk--------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASPK--------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred hcccCCceeeeccCCceeecccCCc--------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc
Confidence 9999999999999999999998632 4455566777777777764 555654 35688999997644333
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 749 QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 749 ~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
..+...|.+.++++++.|..+.+++||.+|.|++||++..+.+..+.. ++....+++|+..|.+++|++...
T Consensus 2329 s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2329 SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEcccc
Confidence 333358999999999999999999999999999999988766654432 344558999999999999999988
Q ss_pred EEEEEEe
Q psy3053 829 QLLKQVR 835 (917)
Q Consensus 829 ~~i~~l~ 835 (917)
..+.+++
T Consensus 2401 ~ll~~~p 2407 (2439)
T KOG1064|consen 2401 GLLHTFP 2407 (2439)
T ss_pred chhhcCc
Confidence 7777665
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-07 Score=103.80 Aligned_cols=262 Identities=13% Similarity=0.085 Sum_probs=167.2
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCce----
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI---- 667 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~V---- 667 (917)
+..++.++.+|.+..+|.++|+.+.+.........+... .+..+++++.+|.+..+|.++|+.+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456777888999999999999988876654322222122 24567778889999999999999988775421111
Q ss_pred -eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc-CC-CceEEEEEeC--CCCEEEEEECCCeEEEEEC
Q psy3053 668 -SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD-LD-NRIKCLAISK--DNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 668 -t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~-~~V~~l~~sp--dg~~Lasgs~dG~I~iwDl 742 (917)
.+-.. .+..++.++.+|.+...|..++........ ....+ .. .....+..+| .+..+++++.+|.+..+|.
T Consensus 198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~--~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRI--SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheecc--ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 11111 124577778899999898877642221100 00000 00 0000111112 2556777788999999999
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CC-ceEEEEEeCCCEEEEEeCCCeE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF-EE-KLLCLSWAGEEKVILGGALGMV 820 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-~~-~i~~l~~s~~~~lv~gs~dG~I 820 (917)
.+|+.+...... ....+. ..+..++.++.+|.+..+|..+|+.+..... .. ...+.... ++.+++++.+|.+
T Consensus 274 ~tG~~~W~~~~~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l 347 (394)
T PRK11138 274 RSGQIVWKREYG---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYL 347 (394)
T ss_pred CCCCEEEeecCC---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEE
Confidence 999887765421 111222 2456788888999999999999987654332 11 12222233 4589999999999
Q ss_pred EEEECCCCEEEEEEecCCCceEE-EeecCCEEEEEeCCCeEEEEEC
Q psy3053 821 YLVDLIQVQLLKQVRAHKDAVLS-LHFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 821 ~vwdl~~~~~i~~l~~h~~~V~s-is~dg~~Lasgs~DG~I~Iwdl 865 (917)
.+.|..+|+.+.+.......+.+ ....+..|+.++.||.++.++.
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 99999999988877654333332 1235668889999999888764
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-07 Score=104.03 Aligned_cols=323 Identities=14% Similarity=0.125 Sum_probs=209.4
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCC------------CCEEEEEecccEEEEEE
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD------------NCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd------------~~~Lasgs~Dg~I~Iwd 650 (917)
-.++.|+|.| ++|-| ....|.+-|..+-+.++++..|...|+.+.|.|- .-.||++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899988 44444 4567889999999999999999999999999873 12577888899999999
Q ss_pred eccCeeeEEeccCCCceeEEEecC---CC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CC
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDE---KR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DN 725 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~sp---d~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 725 (917)
...+..+..+..|.+++..++|-+ ++ ..|+.-....++.+|+..+|....+ .........|+.+.| |.
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-------~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-------YDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-------cccCCcceeeeeeCCCCc
Confidence 999999999999999999999965 33 4677777788999999988832211 122234566788888 56
Q ss_pred CEEEEEECCCeEEEEECCC-------CeeeEEecCCCCC------------C-------------eEEEEEecCCCEEEE
Q psy3053 726 NQLAVGTEAGELIIWSLEN-------HLMTQQLSDDINA------------S-------------VNGVLFSEDGCRVLS 773 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~-------~~~~~~l~~~h~~------------~-------------V~~v~fspdg~~L~s 773 (917)
+.+..-+..|.+.+.+.-. ++..+ +...|.. . ...++|+|.-+.++.
T Consensus 169 rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 169 RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred ceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 6777777777777766432 12111 1112211 0 112567886666666
Q ss_pred EeCCCeEEEEECCCCeEEEEeecCCc-eEEEEEeCC---CEEEEEeCCCeEEEEECCC----------------CEEEEE
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKVFEEK-LLCLSWAGE---EKVILGGALGMVYLVDLIQ----------------VQLLKQ 833 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~~~~~-i~~l~~s~~---~~lv~gs~dG~I~vwdl~~----------------~~~i~~ 833 (917)
..-.+.+.++|++-..++.....+.. +.-+.+-|+ ..++++..+|.+.+|-.+. +.....
T Consensus 248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 66677788998876666655554322 222333322 2355666666666654322 100000
Q ss_pred E---------------------------------------------------------------------------ecCC
Q psy3053 834 V---------------------------------------------------------------------------RAHK 838 (917)
Q Consensus 834 l---------------------------------------------------------------------------~~h~ 838 (917)
+ .+|.
T Consensus 328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~ 407 (1062)
T KOG1912|consen 328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHS 407 (1062)
T ss_pred EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCC
Confidence 0 0122
Q ss_pred CceEEE--e-----------ecC-------CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE----
Q psy3053 839 DAVLSL--H-----------FDN-------CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI---- 894 (917)
Q Consensus 839 ~~V~si--s-----------~dg-------~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La---- 894 (917)
...++. . |.+ ..+|.|...|+|.++|+.++...+.+..|++.|.++.|-....++-
T Consensus 408 sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys 487 (1062)
T KOG1912|consen 408 SGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYS 487 (1062)
T ss_pred CCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeec
Confidence 222222 0 011 2578899999999999999999999999999999999976544332
Q ss_pred -----EEeCCCcEEEEecCcceEEEE
Q psy3053 895 -----SGNLVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 895 -----Sgs~DG~V~IWdl~~~ll~~L 915 (917)
+|+.-+.+.+=++.+++-..+
T Consensus 488 ~~n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 488 HVNSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cccccccceeeeEEEEEccccccccc
Confidence 222223455666665554444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-07 Score=105.29 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=129.9
Q ss_pred ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE---EEecc--cEEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 603 MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML---VGCWD--SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La---sgs~D--g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
.|.+.|.+.+. .+.+........+-+|+|||+.++ +...+ ..|++.++.+|+... +....+.....+|+|||+
T Consensus 166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 56666665443 333444455567779999997532 33333 358888888776433 333445556789999999
Q ss_pred EEEEEEC-CC----eEEEEeCCCCCCCccCCcceeeec-cCCCceEEEEEeCCCCEEEEEE-CCCeEEEE--ECCC-Cee
Q psy3053 678 RLISGSW-DC----TVRVWNTGASWSHMKPSKSLVSQL-DLDNRIKCLAISKDNNQLAVGT-EAGELIIW--SLEN-HLM 747 (917)
Q Consensus 678 ~L~Sgs~-Dg----tI~vWdl~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs-~dG~I~iw--Dl~~-~~~ 747 (917)
.|+..+. +| .+..|++..+.. ....... .........+|+|||+.|+..+ .+|...+| ++.. +..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~-----g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI-----GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC-----CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 8886653 23 344467654310 0111111 1223345789999999887765 45654444 5532 223
Q ss_pred eEEecCCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeC---CCeE
Q psy3053 748 TQQLSDDINASVNGVLFSEDGCRVLSCGNN---CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGA---LGMV 820 (917)
Q Consensus 748 ~~~l~~~h~~~V~~v~fspdg~~L~s~s~D---g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~---dG~I 820 (917)
...+. .....+....|+|||+.|+.++.+ ..|.+||+.+++..........+....|+|++. ++..+. .+.|
T Consensus 319 ~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 319 PRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 34443 334566788999999999877643 368999998886644332333456677777654 332222 2456
Q ss_pred EEEECCCCEE
Q psy3053 821 YLVDLIQVQL 830 (917)
Q Consensus 821 ~vwdl~~~~~ 830 (917)
+++|+.+++.
T Consensus 398 ~~vdl~~g~~ 407 (428)
T PRK01029 398 YLISLITKKT 407 (428)
T ss_pred EEEECCCCCE
Confidence 6666665543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-07 Score=94.17 Aligned_cols=219 Identities=18% Similarity=0.132 Sum_probs=145.6
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEE--ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVA--WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~--~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
+|+|..||..+|+.+....--. ...... ..+++..+++++.++.+..||..++. ..-.......+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~--------~~W~~~~~~~~~~~~ 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGK--------VLWRFDLPGPISGAP 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSE--------EEEEEECSSCGGSGE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCC--------EEEEeecccccccee
Confidence 6889999999999988775311 122111 22355788888999999999998872 111111122211111
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeeeEEe-cCCC--CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLENHLMTQQL-SDDI--NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l-~~~h--~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
...+..+++++.++.+..+|..+|+.+... .... ...........++..++++..++.|..+|.++|+.+......
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 234566777788899999999999998884 3111 111223333334788899988999999999999998776653
Q ss_pred Cce-----------EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEE-EeecCCEEEEEeCCCeEEEEEC
Q psy3053 798 EKL-----------LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS-LHFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 798 ~~i-----------~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~s-is~dg~~Lasgs~DG~I~Iwdl 865 (917)
... .+-....++.+++++.+|.+..+|+.+++.+.... ...+.. ...++..+++++.+|.|..||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 311 12222234488888888865555999999765333 333444 5678889998889999999999
Q ss_pred cCCeEEEE
Q psy3053 866 ECGRIVTE 873 (917)
Q Consensus 866 ~tg~~l~~ 873 (917)
++|+.+.+
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99998754
|
... |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-07 Score=104.75 Aligned_cols=189 Identities=16% Similarity=0.187 Sum_probs=143.1
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe--------------------CCCCEEEEEEC
Q psy3053 674 EKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS--------------------KDNNQLAVGTE 733 (917)
Q Consensus 674 pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--------------------pdg~~Lasgs~ 733 (917)
|...++|..+.||.+++|++..+..... ........+..++..|. .+...++-|..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e----~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQE----FAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeee----eccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 4457899999999999999987631111 11111122333333331 23457888999
Q ss_pred CCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CCceEEEEEeCCCEE
Q psy3053 734 AGELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF-EEKLLCLSWAGEEKV 811 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-~~~i~~l~~s~~~~l 811 (917)
.|.|.+|++..++....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+...+..++.... ...+.+++.+|++.+
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE
Confidence 9999999999999988887 67999999999999999999999999999999999988877654 455788888888543
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--c-----CCEEEEE-eCCCeEEEEECcC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--D-----NCTMLVG-CWDSCVVIYDVEC 867 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--d-----g~~Lasg-s~DG~I~Iwdl~t 867 (917)
+ +...+.|.+||+.+++.+..+.||.++|.++++ + |.++.++ ..+.-+.+|-+..
T Consensus 159 l-~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 L-LTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred E-EeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 3 344578999999999999999999999999966 2 5565554 4455577886643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-05 Score=86.52 Aligned_cols=283 Identities=13% Similarity=0.145 Sum_probs=179.5
Q ss_pred CCceEEEeccCCcee---eeeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEecc--CeeeEE--eccCCCceeEE
Q psy3053 601 DAMLKIHSLKTGRQE---RSAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVEC--GRIVTE--LAGHEDAISCV 670 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~---~~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~t--g~~i~~--l~~H~~~Vt~l 670 (917)
+.-|.+|++.+..-. ...-......+-++|+|+++.|.++.. +|.|..|.++. |+.... ...-..+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743211 112234456788999999999888755 46788887774 554321 11122334789
Q ss_pred EecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCc----------eEEEEEeCCCCEEEEEEC-CCeEE
Q psy3053 671 AWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNR----------IKCLAISKDNNQLAVGTE-AGELI 738 (917)
Q Consensus 671 ~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~spdg~~Lasgs~-dG~I~ 738 (917)
++++++++++++.. .|.|.++-+....... .......|.+. +.+..+.|+++++++.+- .-.|.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~----~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQ----PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccc----cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 99999999999885 4789999886642111 11122223333 788999999999988753 24699
Q ss_pred EEECCCCeeeEEec--CCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC--eEE--EEe-------ecCCceEEEE
Q psy3053 739 IWSLENHLMTQQLS--DDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTG--MQV--CNK-------VFEEKLLCLS 804 (917)
Q Consensus 739 iwDl~~~~~~~~l~--~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg--~~i--~~~-------~~~~~i~~l~ 804 (917)
+|++..|.....-. -......+.+.|+|++++..+.++ +++|.+|..... +.. ... .......++.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 99999776543221 134567789999999999877664 889999988763 221 111 1233467788
Q ss_pred EeCCCEEEEEeCCC--eEEEEECCC--CEE--EEEEecC--CCceEEEeecCCEEEEEeCC-CeEEEEEC--cCCeEEEE
Q psy3053 805 WAGEEKVILGGALG--MVYLVDLIQ--VQL--LKQVRAH--KDAVLSLHFDNCTMLVGCWD-SCVVIYDV--ECGRIVTE 873 (917)
Q Consensus 805 ~s~~~~lv~gs~dG--~I~vwdl~~--~~~--i~~l~~h--~~~V~sis~dg~~Lasgs~D-G~I~Iwdl--~tg~~l~~ 873 (917)
.+++|+++.++..| .|.++.+.. +++ +.....+ ...-..++++|++|+++..+ ..|.+|.. .+|++...
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 88999988877764 577776643 332 2222222 23344558899999988875 46888865 45555433
Q ss_pred ec-CCCCCEEEEEEc
Q psy3053 874 LA-GHEDAISCVAWD 887 (917)
Q Consensus 874 l~-~h~~~V~slafS 887 (917)
.. .......|+.|.
T Consensus 331 ~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 331 GRYAVVPEPVCVKFL 345 (346)
T ss_pred ccccCCCCcEEEEEc
Confidence 32 223334555553
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-09 Score=116.77 Aligned_cols=293 Identities=15% Similarity=0.211 Sum_probs=189.7
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccC-Cceeeeee-ccccceEEEEEeCCC--CEEEEEecccEEEEEEecc--
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKT-GRQERSAV-LSSMTLSSLCILPDN--CTMLVGCWDSCVVIYDVEC-- 653 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t-~~~~~~~~-~~~~~V~sl~~spd~--~~Lasgs~Dg~I~Iwdl~t-- 653 (917)
.+++.++.++|.|+-+|.++.-|.+ +-|+.. +...+-+. ...-.|....|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 4578889999999999999887754 445543 33333222 123346677788753 3444444445556898753
Q ss_pred -CeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 654 -GRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 654 -g~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
......+.||..+|+.+.|+|. ...+++++.|..+..||+++. ................++|+-....+.+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp------~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP------HRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC------CcceeeeecccccCceeeecccCcchhhh
Confidence 3455677899999999999985 458899999999999999875 22333344455667789998866666666
Q ss_pred ECCCeEEEEECCCCe-eeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCceEEEEEeC
Q psy3053 732 TEAGELIIWSLENHL-MTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQV--CNKVFEEKLLCLSWAG 807 (917)
Q Consensus 732 s~dG~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i--~~~~~~~~i~~l~~s~ 807 (917)
+....|.+||++.|. ++..++ +|...|..+.|.. ....+.+++.||+|+.||-...... .......++..-.+.|
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred ccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 778889999999775 445555 6888888888876 3446788899999999997543221 1222222222111111
Q ss_pred --CCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcC-CeEEEEecCCCCCEEEE
Q psy3053 808 --EEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHEDAISCV 884 (917)
Q Consensus 808 --~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~t-g~~l~~l~~h~~~V~sl 884 (917)
+|+.+.- .-.+..+..-.-+..-..|+..+ .+++.++.||++.|...
T Consensus 256 fg~g~~~mp------------------------------~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 256 FGEGYCIMP------------------------------MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred cCceeEecc------------------------------ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 1111100 00111111111233344566544 46789999999998877
Q ss_pred EEcCCC----------CEEEEEeCCCcEEEEecCcc
Q psy3053 885 AWDEKR----------KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 885 afSpdg----------~~LaSgs~DG~V~IWdl~~~ 910 (917)
.|-..+ -.|+|-+.|.++++|.++..
T Consensus 306 lWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 306 LWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 775432 26999999999999999754
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-07 Score=94.52 Aligned_cols=261 Identities=13% Similarity=0.117 Sum_probs=169.2
Q ss_pred ccEEEEEEeccCeeeE--Ee-ccCCCceeEEEecC---CCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 643 DSCVVIYDVECGRIVT--EL-AGHEDAISCVAWDE---KRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~--~l-~~H~~~Vt~l~~sp---d~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
.|.+.+|++...+... .+ ..-++.+..+.|.. ++. .++-+-.+|.|.++........... ..+....-....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhhee
Confidence 4678888887655433 11 12335566777753 444 5666777899999976543211000 000000001113
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeE--EecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC-CCeEE
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ--QLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLT-TGMQV 791 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~--~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~-tg~~i 791 (917)
..++.|++.+..++++..+|.+.+-+........ ..+ .|.-+.....|+. +.+.+.+|+.|+.+..||++ .++.+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 5678899999999999999999966655544433 455 7888899999986 45688999999999999998 33333
Q ss_pred E--EeecCCceEEEEEeCC--CEEEEEeCCCeEEEEECCC-CEEEEEEecCCCceEEEe--e--cCCEEEEEeCCCeEEE
Q psy3053 792 C--NKVFEEKLLCLSWAGE--EKVILGGALGMVYLVDLIQ-VQLLKQVRAHKDAVLSLH--F--DNCTMLVGCWDSCVVI 862 (917)
Q Consensus 792 ~--~~~~~~~i~~l~~s~~--~~lv~gs~dG~I~vwdl~~-~~~i~~l~~h~~~V~sis--~--dg~~Lasgs~DG~I~I 862 (917)
. ...|...|.++.-++. ..+++|+.|..|++||.++ ++++..-. -.+.|..+. | .+..++++..+| .+|
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki 280 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKI 280 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceE
Confidence 2 3456777888887753 3689999999999999985 45554432 347788883 3 233455554554 666
Q ss_pred EECcCCe-----EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEE-EEec
Q psy3053 863 YDVECGR-----IVTELAGHEDAISCVAWDEKRKRLISGN-LVGAPK-LYAT 907 (917)
Q Consensus 863 wdl~tg~-----~l~~l~~h~~~V~slafSpdg~~LaSgs-~DG~V~-IWdl 907 (917)
-+.+.+. .....+.|.+-+..-.|......|||++ .|..++ +|-.
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 6665432 3445567777777778865556788865 676655 7743
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-06 Score=91.21 Aligned_cols=224 Identities=19% Similarity=0.217 Sum_probs=143.4
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEE--EeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCE
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLC--ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR 678 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~--~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~ 678 (917)
+|+|..||..+|+.+.+..... ...... ..+++..+++++.++.+..||..+|+.+..... .+.+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6889999999998888775521 122222 344677788889999999999999999887765 22222111 224467
Q ss_pred EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC-
Q psy3053 679 LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA- 757 (917)
Q Consensus 679 L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~- 757 (917)
++.++.|+.+..+|..++...... ...................++.++++..+|.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSI---YLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEE---EE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeee---ccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 777778999999998887321110 0000000111222233334888999999999999999999998887632211
Q ss_pred --C------eEEEEEecCCCEEEEEeCCCe-EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 758 --S------VNGVLFSEDGCRVLSCGNNCM-LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 758 --~------V~~v~fspdg~~L~s~s~Dg~-I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
. +..-....++ .+..++.++. +.+ |+.+++.+.... ...........++.+++++.++.+..||+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1 1122222345 7777777775 555 999999775444 33444423344558888889999999999999
Q ss_pred EEEEE
Q psy3053 829 QLLKQ 833 (917)
Q Consensus 829 ~~i~~ 833 (917)
+.+.+
T Consensus 233 ~~~W~ 237 (238)
T PF13360_consen 233 KVVWQ 237 (238)
T ss_dssp EEEEE
T ss_pred CEEeE
Confidence 87643
|
... |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=96.97 Aligned_cols=274 Identities=13% Similarity=0.169 Sum_probs=169.9
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-----------CCeEEEEe
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-----------DCTVRVWN 692 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-----------DgtI~vWd 692 (917)
.-+-+.|||.|.+|++-...| |.+|--.+-..++.+. |. .|.-+.|||+.++|+|-|. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346688999999999988776 7789765555555553 65 4889999999999998763 15799999
Q ss_pred CCCCCCCccCCcceeeeccCCCc-eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNR-IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
+.+|..... .. ....... -.-..||.|++++|.-..+ +|.||+..+..++..-. -.-..|....|+|.+..|
T Consensus 289 I~tG~lkrs----F~-~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 289 IATGLLKRS----FP-VIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNLL 361 (698)
T ss_pred ccccchhcc----ee-ccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccc-cCCccccCcccCCCcceE
Confidence 999831110 00 0011122 2346899999999887764 69999987744433222 345678899999998888
Q ss_pred EEEeC-----CCeEEEEECCCCeEEEEeecCCceE-EEEEeCCCEEEEE-----------eCCCeEEEEECCCCEEEEEE
Q psy3053 772 LSCGN-----NCMLNVYDLTTGMQVCNKVFEEKLL-CLSWAGEEKVILG-----------GALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 772 ~s~s~-----Dg~I~iwDl~tg~~i~~~~~~~~i~-~l~~s~~~~lv~g-----------s~dG~I~vwdl~~~~~i~~l 834 (917)
|.=.. -..+.+-.+.+++.+.....-.-.. .+.|..+|..++- +.-..+.++.++........
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 74332 2356666776666665543322221 2344443333321 22223445555443322222
Q ss_pred ecCCCceEEE--eecCCEEEEEeC---CCeEEEEECcC-C---eEEEEecCCCCCEEEEEEcCCCCEEEEE---eCCCcE
Q psy3053 835 RAHKDAVLSL--HFDNCTMLVGCW---DSCVVIYDVEC-G---RIVTELAGHEDAISCVAWDEKRKRLISG---NLVGAP 902 (917)
Q Consensus 835 ~~h~~~V~si--s~dg~~Lasgs~---DG~I~Iwdl~t-g---~~l~~l~~h~~~V~slafSpdg~~LaSg---s~DG~V 902 (917)
..-...|... .|.|+.+++-+. ..++.+|.+++ . +++..+.. ...+.+.|+|.|++++.+ |..|.+
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccce
Confidence 2234555555 446666555433 35788888773 2 23334432 456789999999999876 467889
Q ss_pred EEEecCc
Q psy3053 903 KLYATEF 909 (917)
Q Consensus 903 ~IWdl~~ 909 (917)
.++|++.
T Consensus 520 ~F~D~~~ 526 (698)
T KOG2314|consen 520 EFYDTDY 526 (698)
T ss_pred EEEecch
Confidence 9999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-06 Score=91.21 Aligned_cols=297 Identities=14% Similarity=0.113 Sum_probs=178.3
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc-EEEEEEeccCeeeEEeccCCCceeE
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS-CVVIYDVECGRIVTELAGHEDAISC 669 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg-~I~Iwdl~tg~~i~~l~~H~~~Vt~ 669 (917)
+|.+++..|. |...|.+...+-.++ -++...|.-..+..+++-++.|..|| .+-|+|.++++... +...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEE
Confidence 5778887775 555555544443332 23455677777888888999999999 89999999877544 4556688999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC----eEEEEECCCC
Q psy3053 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG----ELIIWSLENH 745 (917)
Q Consensus 670 l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG----~I~iwDl~~~ 745 (917)
+..+++|+.++.+.....+.+.|++++. .........+-|+.++|+|+++++|-+--+| .|+++|+.++
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngn-------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGN-------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCC-------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 9999999999999989999999998872 2222334556799999999999999887665 5899999998
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CceEEEEE-----eCCCEE--EEEeC
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE--EKLLCLSW-----AGEEKV--ILGGA 816 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--~~i~~l~~-----s~~~~l--v~gs~ 816 (917)
+...... ..+.-.+-+|.|||++|.--+.. -.|..+...+..+.+. ....-+.. +|-... -+.+.
T Consensus 480 Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~e 553 (668)
T COG4946 480 KIYDVTT--PTAYDFSPAFDPDGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSE 553 (668)
T ss_pred eEEEecC--CcccccCcccCCCCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCcc
Confidence 7766544 23333456889999988765431 1222222222221111 00000000 000000 01111
Q ss_pred CCeEEEEECCCCE--------EEEEEecC-CCceEEEee--cCC---EEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 817 LGMVYLVDLIQVQ--------LLKQVRAH-KDAVLSLHF--DNC---TMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 817 dG~I~vwdl~~~~--------~i~~l~~h-~~~V~sis~--dg~---~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
.|.+-+=++.... ..+.+.+- .+.|.-.+. .|. +.-.+-.-|.+.+||+++.+.. .-...++
T Consensus 554 a~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~----e~k~nvs 629 (668)
T COG4946 554 AGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVE----EYKDNVS 629 (668)
T ss_pred ccceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHH----HHhcccc
Confidence 2222111111100 00011111 111211111 111 1122334566777777654432 1235689
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 883 CVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++..|+|++.+.. -.||.+++++++.
T Consensus 630 s~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 630 SFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred eEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 9999999999888 8899999999985
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-07 Score=94.00 Aligned_cols=262 Identities=10% Similarity=0.066 Sum_probs=173.6
Q ss_pred CCceEEEeccCCceee---eeeccccceEEEEEeC---CCC-EEEEEecccEEEEEEeccCeeeEEeccCCC------ce
Q psy3053 601 DAMLKIHSLKTGRQER---SAVLSSMTLSSLCILP---DNC-TMLVGCWDSCVVIYDVECGRIVTELAGHED------AI 667 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~---~~~~~~~~V~sl~~sp---d~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~------~V 667 (917)
.|.+.++++.+.+... ........+..+.|.- ++. .++-+..+|.|.++..........+.+-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4667778776654432 1112334455666652 444 566777889999998776555444444221 23
Q ss_pred eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEECC-CC
Q psy3053 668 SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLE-NH 745 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~-~~ 745 (917)
.++.|++.+..++++-.+|.+.+-+.... ..........|+-+.+...|+.. .+++.+|+.||.+..||++ .+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 46778888889999999999985554332 11222345678888888888764 4788999999999999999 44
Q ss_pred eeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCceEEEEEeCCC--EEEEEeCCCeEE
Q psy3053 746 LMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLT-TGMQVCNKVFEEKLLCLSWAGEE--KVILGGALGMVY 821 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~-tg~~i~~~~~~~~i~~l~~s~~~--~lv~gs~dG~I~ 821 (917)
+.+..-...|...|.++.-+| .+.++++|+.|..|++||.+ -++++..-...+.|..+.++|.. .+++++...-.+
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~k 279 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAK 279 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCce
Confidence 555554446888999998887 68899999999999999998 57788777778899999998752 355555555566
Q ss_pred EEECCCCE-----EEEEEecCCCceEEEeecC--CEEEEEe-CCCeEE-EEECcC
Q psy3053 822 LVDLIQVQ-----LLKQVRAHKDAVLSLHFDN--CTMLVGC-WDSCVV-IYDVEC 867 (917)
Q Consensus 822 vwdl~~~~-----~i~~l~~h~~~V~sis~dg--~~Lasgs-~DG~I~-Iwdl~t 867 (917)
+.+...+. .......|.+-+..-.++. ..+++++ .|..++ +|-.-+
T Consensus 280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred EEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 66665432 2233345555544444432 3466644 355544 554333
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-06 Score=106.40 Aligned_cols=243 Identities=14% Similarity=0.039 Sum_probs=149.8
Q ss_pred eEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCC-cce-----eeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEE
Q psy3053 668 SCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPS-KSL-----VSQLDLDNRIKCLAISKDNNQLAVGT-EAGELII 739 (917)
Q Consensus 668 t~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~-~~~-----~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~i 739 (917)
..++++++ +...++-+.++.|.+||........... ... ......-.....++++++++.|.++. .++.|+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 34556553 4455555566677777764321000000 000 00001123467899999888666554 4577999
Q ss_pred EECCCCeeeEEecC-CC---------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEee-------
Q psy3053 740 WSLENHLMTQQLSD-DI---------------NASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKV------- 795 (917)
Q Consensus 740 wDl~~~~~~~~l~~-~h---------------~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~------- 795 (917)
+|+.++.. .++.. +. -.....++++| ++..+++.+.++.|++||..++.......
T Consensus 651 id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 99887653 22211 00 12346899999 56666777788999999998775432110
Q ss_pred --------cCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEEec-------------CCC--------ceE--
Q psy3053 796 --------FEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQVRA-------------HKD--------AVL-- 842 (917)
Q Consensus 796 --------~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~-------------h~~--------~V~-- 842 (917)
.-.....+++++++ .+++.+.++.|++||+.++.......+ +.+ ...
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 01234568888775 345566679999999987653211100 000 112
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcCCeEEEEec-------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELA-------------GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~-------------~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+++++|+.+++-+.++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||++.
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 336688888888889999999998876653321 1123567899999999999989999999999987
Q ss_pred ce
Q psy3053 910 YL 911 (917)
Q Consensus 910 ~l 911 (917)
..
T Consensus 890 ~~ 891 (1057)
T PLN02919 890 GE 891 (1057)
T ss_pred Cc
Confidence 54
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-06 Score=106.91 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=156.2
Q ss_pred EEEEEeCC-CcEEEEEecCCceEEEeccCCceeeeeec-c-------------ccceEEEEEeCCCCEEEEEe-cccEEE
Q psy3053 584 TAVAICGE-GISVASVGRDAMLKIHSLKTGRQERSAVL-S-------------SMTLSSLCILPDNCTMLVGC-WDSCVV 647 (917)
Q Consensus 584 tsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~-------------~~~V~sl~~spd~~~Lasgs-~Dg~I~ 647 (917)
..++++++ |...++-+..+.|.++|.. +..+..+.. . -..-..+++.++++.|.++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788875 5566666678889999975 443332221 0 01246788998887666654 457899
Q ss_pred EEEeccCeeeEEeccC-----------------CCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCcc-CCcceee
Q psy3053 648 IYDVECGRIVTELAGH-----------------EDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMK-PSKSLVS 708 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H-----------------~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~-~~~~~~~ 708 (917)
++|..++.. .++.+- -..-..++++| ++..+++.+.++.|++||..++..... .......
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 999877653 222110 11235789999 566667777889999999876521100 0000000
Q ss_pred ------eccCCCceEEEEEeCCCCE-EEEEECCCeEEEEECCCCeeeEEecC------------C--------CCCCeEE
Q psy3053 709 ------QLDLDNRIKCLAISKDNNQ-LAVGTEAGELIIWSLENHLMTQQLSD------------D--------INASVNG 761 (917)
Q Consensus 709 ------~~~h~~~V~~l~~spdg~~-Lasgs~dG~I~iwDl~~~~~~~~l~~------------~--------h~~~V~~ 761 (917)
....-.....++++|+++. +++-+.++.|++||+.++........ . .-....+
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 0011134677999999984 45556678999999987653211100 0 0113468
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--------------CceEEEEEeCCCEEE-EEeCCCeEEEEECC
Q psy3053 762 VLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE--------------EKLLCLSWAGEEKVI-LGGALGMVYLVDLI 826 (917)
Q Consensus 762 v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--------------~~i~~l~~s~~~~lv-~gs~dG~I~vwdl~ 826 (917)
++++++|..+++.+.++.|++||..++......... .....+++++++.++ +.+.++.|++||+.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 999999998888889999999999887655332211 145678888776654 55567899999998
Q ss_pred CCEE
Q psy3053 827 QVQL 830 (917)
Q Consensus 827 ~~~~ 830 (917)
+++.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-06 Score=96.04 Aligned_cols=279 Identities=15% Similarity=0.130 Sum_probs=173.3
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeecccc------ceE--EEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccC
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSM------TLS--SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 663 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~------~V~--sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H 663 (917)
+..++.++.++.+...|..+|+.+........ .+. .++. .++..++.++.+|.|+.+|.++|+.+......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44577778889999999999988776654322 000 0111 12267888889999999999999998877543
Q ss_pred CCc-----e-eEEEecCCCCEEEEEE---------CCCeEEEEeCCCCCCCccCCcc---eeeec---------cCC-Cc
Q psy3053 664 EDA-----I-SCVAWDEKRKRLISGS---------WDCTVRVWNTGASWSHMKPSKS---LVSQL---------DLD-NR 715 (917)
Q Consensus 664 ~~~-----V-t~l~~spd~~~L~Sgs---------~DgtI~vWdl~~~~~~~~~~~~---~~~~~---------~h~-~~ 715 (917)
... + .+..+. +..++.++ .+|.+...|..++......... ..... ... ..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 1 112222 24455554 3678888888777422211000 00000 000 11
Q ss_pred e-EEEEEeCCCCEEEEEECCC------------------eEEEEECCCCeeeEEecCCCCC-----CeEEEEEe----cC
Q psy3053 716 I-KCLAISKDNNQLAVGTEAG------------------ELIIWSLENHLMTQQLSDDINA-----SVNGVLFS----ED 767 (917)
Q Consensus 716 V-~~l~~spdg~~Lasgs~dG------------------~I~iwDl~~~~~~~~l~~~h~~-----~V~~v~fs----pd 767 (917)
+ .+.++.+.+..+++++.++ .+.-+|..+|+........+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1345566677888887665 7999999999998887532211 00111111 13
Q ss_pred CC---EEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEE------------------eCCCeEEEEECC
Q psy3053 768 GC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILG------------------GALGMVYLVDLI 826 (917)
Q Consensus 768 g~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~g------------------s~dG~I~vwdl~ 826 (917)
|. .+++++.+|.+...|.++|+.+....... ..++.++ +.+.++ ..+|.+...|+.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 33 57778889999999999999887654321 1123334 344443 246889999999
Q ss_pred CCEEEEEEecCC--------Cce--EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecC
Q psy3053 827 QVQLLKQVRAHK--------DAV--LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 827 ~~~~i~~l~~h~--------~~V--~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~ 876 (917)
+|+.+-+..... .+. ..+...+..+++|+.||.++.+|.++|+.+.+.+-
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 999877665331 111 12345778899999999999999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-05 Score=85.37 Aligned_cols=347 Identities=12% Similarity=0.103 Sum_probs=200.0
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEE-----E--ecCCceEEEeccCCceeeeeeccccceEEEE-EeCC
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVAS-----V--GRDAMLKIHSLKTGRQERSAVLSSMTLSSLC-ILPD 633 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Las-----g--s~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~-~spd 633 (917)
.+|.-....-....+..|-+.|+.-.|+|+|+.+|- + ...+.+.+.+.++|+..+..-. ....+.++ |.||
T Consensus 60 dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf-Gr~fT~VaG~~~d 138 (668)
T COG4946 60 DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF-GRRFTRVAGWIPD 138 (668)
T ss_pred HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe-ccccceeeccCCC
Confidence 355533222223456778889999999999988775 2 2345577777788877654443 34444444 8999
Q ss_pred CCEEEEEecccEE----EEEEecc-CeeeEEeccCCCceeEEEec-------------C------CC--CEEEEEECCC-
Q psy3053 634 NCTMLVGCWDSCV----VIYDVEC-GRIVTELAGHEDAISCVAWD-------------E------KR--KRLISGSWDC- 686 (917)
Q Consensus 634 ~~~Lasgs~Dg~I----~Iwdl~t-g~~i~~l~~H~~~Vt~l~~s-------------p------d~--~~L~Sgs~Dg- 686 (917)
|+.+++...-.-. .+|.+.. |-....+ .-++.+.+.+- | .| ..|..++..|
T Consensus 139 g~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~ 216 (668)
T COG4946 139 GEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGK 216 (668)
T ss_pred CCEEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCc
Confidence 9988876432211 1222221 1000000 00111111110 0 00 1222222222
Q ss_pred -eEEEEeCCCCCCCcc-CCcceeeeccCC--CceEEEE-------------------EeCCCCEEEEEECCCeEEEEECC
Q psy3053 687 -TVRVWNTGASWSHMK-PSKSLVSQLDLD--NRIKCLA-------------------ISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 687 -tI~vWdl~~~~~~~~-~~~~~~~~~~h~--~~V~~l~-------------------~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
-=++-|+.+.....- ....+--...|+ +.+.++. .+.||+.++. +..|.|.++|..
T Consensus 217 tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~ 295 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPE 295 (668)
T ss_pred ceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCC
Confidence 233444443311000 000000111111 2233332 3457777776 456889999988
Q ss_pred CCeeeEEecC-CC------CC---CeEEEE-Eec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe--CCC
Q psy3053 744 NHLMTQQLSD-DI------NA---SVNGVL-FSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA--GEE 809 (917)
Q Consensus 744 ~~~~~~~l~~-~h------~~---~V~~v~-fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s--~~~ 809 (917)
+......-.. +. .. +..-+. |++ +|.+++..+. |...+.+...+..+ .....+.|.-..+. ++
T Consensus 296 td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e- 372 (668)
T COG4946 296 TDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPE- 372 (668)
T ss_pred cCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCCc-
Confidence 7644322110 00 00 111111 333 6778877764 45666665545443 33444556554443 45
Q ss_pred EEEEEeCCC-eEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 810 KVILGGALG-MVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 810 ~lv~gs~dG-~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
.++.|..|| .+-++|..+++. +.+...-+.|.++ +++|+.++++.....+.+.|+++|+....-+...+-|+.++|
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~ 451 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW 451 (668)
T ss_pred ceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence 688889888 899999988764 4445566777777 889999999999999999999999876666666788999999
Q ss_pred cCCCCEEEEEeCCC----cEEEEecCcceEEEEe
Q psy3053 887 DEKRKRLISGNLVG----APKLYATEFYLLYVLT 916 (917)
Q Consensus 887 Spdg~~LaSgs~DG----~V~IWdl~~~ll~~Lt 916 (917)
||+++++|-+--+| .|+++|+.+..++.+|
T Consensus 452 ~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 452 HPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred cCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 99999999876655 6899999998777654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-05 Score=82.77 Aligned_cols=251 Identities=9% Similarity=0.088 Sum_probs=164.4
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecC---CceEEEeccC--Cce--eeeeeccccceEEEEEeCCCCEEEEEec-ccEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRD---AMLKIHSLKT--GRQ--ERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVI 648 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t--~~~--~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~I 648 (917)
-.+.+..+-++++|+++.|.++..+ |.|..|.++. |+. +........+-..+++++++++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 3456778889999999999988654 6788877764 443 2222333444478899999999998865 678999
Q ss_pred EEecc-CeeeE--EeccCCCc----------eeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 649 YDVEC-GRIVT--ELAGHEDA----------ISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 649 wdl~t-g~~i~--~l~~H~~~----------Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
+-+.. |.+.. ....|.+. +.+..+.|++++|++.+-. -.|.+|++..+..... . ........
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~--~--~~~v~~G~ 191 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA--D--PAEVKPGA 191 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc--c--ccccCCCC
Confidence 99865 43322 22235555 8889999999999987632 3688999986532111 1 11225566
Q ss_pred ceEEEEEeCCCCEEEEEE-CCCeEEEEECCCC--e--eeEEec---C--CCCCCeEEEEEecCCCEEEEEeC-CCeEEEE
Q psy3053 715 RIKCLAISKDNNQLAVGT-EAGELIIWSLENH--L--MTQQLS---D--DINASVNGVLFSEDGCRVLSCGN-NCMLNVY 783 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~--~--~~~~l~---~--~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iw 783 (917)
....|.|+|++++..+.+ -+++|.+|..... + .++.+. . .......++..++||++|.++.. ...|.++
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 788999999999887655 4789999988773 2 222221 1 12346778999999999998764 2367777
Q ss_pred ECC--CCeEEE--EeecCCc-eEEEEEeCCCE-EEEEeCC-CeEEEEEC--CCCEEE
Q psy3053 784 DLT--TGMQVC--NKVFEEK-LLCLSWAGEEK-VILGGAL-GMVYLVDL--IQVQLL 831 (917)
Q Consensus 784 Dl~--tg~~i~--~~~~~~~-i~~l~~s~~~~-lv~gs~d-G~I~vwdl--~~~~~i 831 (917)
.+. +++... .....+. .+.+.+++.+. ++++..+ ..|.+|.. .+|++.
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 664 343222 2222333 67788876654 4444443 56777755 455543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-06 Score=96.88 Aligned_cols=191 Identities=14% Similarity=0.076 Sum_probs=122.7
Q ss_pred ceEEEEEeCCCcE-EEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEeccC
Q psy3053 582 AITAVAICGEGIS-VASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVECG 654 (917)
Q Consensus 582 ~Vtsv~fSpdg~~-Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~tg 654 (917)
.+..-.|||||+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++.... +..|+++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7778999999985 6654443 468888988876544333 3444566789999987765432 356888888877
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEEC-CC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSW-DC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
+.. .+..+........|+|||+.|+-.+. .+ .|.+.|+.++.. ......... ...|+|+|+.++..
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------~rlt~~g~~--~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------EQVVFHGKN--NSSVSTYKNYIVYS 336 (419)
T ss_pred cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------EeCccCCCc--CceECCCCCEEEEE
Confidence 643 44444443456689999998876663 33 566677765521 111111111 24899999988877
Q ss_pred ECC---------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEECCC
Q psy3053 732 TEA---------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC---MLNVYDLTT 787 (917)
Q Consensus 732 s~d---------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---~I~iwDl~t 787 (917)
+.. ..|.+.|+.++.. +.+... .......|+|||+.++..+.++ .+.+.++..
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYI-RRLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCe-EECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 654 3688889988764 344422 2334688999999888765432 355556544
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=95.86 Aligned_cols=252 Identities=12% Similarity=0.129 Sum_probs=141.6
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCce------------eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQ------------ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~------------~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
|+.+.++.+- .|+++..++.+.......+.+ .+.+..+..+-.+-+.+-.++.+++|..||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 4555554432 455666565555444332222 222222332222223344567899999999999999
Q ss_pred eccCee-eEEecc-CCCceeEEEecCCCCEEEEEE-----CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 651 VECGRI-VTELAG-HEDAISCVAWDEKRKRLISGS-----WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 651 l~tg~~-i~~l~~-H~~~Vt~l~~spd~~~L~Sgs-----~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
.+.-.. ...+.. |.+. -+.+....++.+.++. .-+..+.|+++.. ............|++++-+|
T Consensus 118 ~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~-------~t~~~~~~~~~~v~~l~~hp 189 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI-------KTLIPSKKALDAVTALCSHP 189 (319)
T ss_pred chHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccc-------ccccccccccccchhhhCCc
Confidence 875211 111111 2221 1222223344444432 1223445554432 11111222233499999999
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 724 DN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 724 dg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
.. +.+++|+.||.+.+||.++......+...|..++..+.|+| ++..|+++++||.+.-||..+. .+.
T Consensus 190 ~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~-~l~--------- 259 (319)
T KOG4714|consen 190 AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT-FLS--------- 259 (319)
T ss_pred ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc-eEE---------
Confidence 54 67788999999999999988666555558999999999999 6789999999999999997642 211
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECC---CC-EEEE-EEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLI---QV-QLLK-QVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~---~~-~~i~-~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
.+++ ...+..|=-. .. -.+. .+......|.++..-|..+++|+.-+.|++++
T Consensus 260 ---i~~~--------~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ---ISNQ--------ASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ---ecCc--------cccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1111 1122222110 00 0011 11122334455555788999999999998875
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-05 Score=77.00 Aligned_cols=302 Identities=13% Similarity=0.097 Sum_probs=159.3
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEe
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 672 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~ 672 (917)
.+++.|+..+.+..-|..+|+........ ..+.+-+.. -|+.++.|+..|.+++.+..+|.....+..-...=.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 46777888888888888888776543221 222222222 4678999999999999999999887776643322223345
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec
Q psy3053 673 DEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 673 spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~ 752 (917)
.+++..+..|+.|++....|..+.. ......-..+...+-++.+-...|.++...|.+.--..+.........
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~-------cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~ 174 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYG-------CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWA 174 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccc-------eEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehh
Confidence 6788999999999999999987652 222211122222334455533445555556665555544431111111
Q ss_pred CCCCCCeEE--EEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEE-----------EEEeCCCEEEEEeCCCe
Q psy3053 753 DDINASVNG--VLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC-----------LSWAGEEKVILGGALGM 819 (917)
Q Consensus 753 ~~h~~~V~~--v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~-----------l~~s~~~~lv~gs~dG~ 819 (917)
....+++.+ ++. +..+..+.-||.+.-+| ..|+.+......++|.. +.+..++-+.+......
T Consensus 175 ~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~g 250 (354)
T KOG4649|consen 175 ATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAG 250 (354)
T ss_pred hhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccc
Confidence 011222221 111 23444455566666555 44555544444443321 11111222222221222
Q ss_pred EEEEECCCCEEEEEEecCCCceEEE-ee---cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE---EEEEE------
Q psy3053 820 VYLVDLIQVQLLKQVRAHKDAVLSL-HF---DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI---SCVAW------ 886 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h~~~V~si-s~---dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V---~slaf------ 886 (917)
-.+|...+|...+..-...-. ..+ ++ ..+++..++.||++.|.-.+ +.+.+...|.+.+ .++..
T Consensus 251 hL~w~~~~g~t~~vy~~p~l~-F~~h~~~~S~~~ll~~~s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFs 327 (354)
T KOG4649|consen 251 HLLWATQSGTTLHVYLSPKLR-FDLHSPGISYPKLLRRSSGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFS 327 (354)
T ss_pred eEEEEecCCcEEEEEeCcccc-eeccCCCCcchhhhhhhcCCCcEEEEEec--ccccccccCCCccceEEEeecCccccc
Confidence 334554444333222111000 001 11 24567888899988877433 3344444444433 22222
Q ss_pred cC--CCCEEEEEeCCCcEEEEecCcc
Q psy3053 887 DE--KRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 887 Sp--dg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|| =+.+|+.|+.|..|+.||+++.
T Consensus 328 SPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 328 SPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred CCeEEccEEEEEEccCeEEEEecccc
Confidence 22 1246888899999999999863
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-05 Score=90.22 Aligned_cols=196 Identities=10% Similarity=0.057 Sum_probs=127.0
Q ss_pred ceEEEEEeCCCCE-EEEEECC---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCC
Q psy3053 715 RIKCLAISKDNNQ-LAVGTEA---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYDLTT 787 (917)
Q Consensus 715 ~V~~l~~spdg~~-Lasgs~d---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwDl~t 787 (917)
......|+|+|+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++.... +..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 6778999999984 6544433 569999998886655443 4455667889999988775432 35688889888
Q ss_pred CeEEEEeecCCceEEEEEeCCCE-EEEEe-CCC--eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC------
Q psy3053 788 GMQVCNKVFEEKLLCLSWAGEEK-VILGG-ALG--MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD------ 857 (917)
Q Consensus 788 g~~i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG--~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D------ 857 (917)
+................|+|++. ++..+ ..| .|++.|+.+++..+.... ......++|||+.++..+..
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccC
Confidence 76543333333334567888774 44333 223 688889988766433321 11234779999988776543
Q ss_pred ---CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcceEEEE
Q psy3053 858 ---SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV---GAPKLYATEFYLLYVL 915 (917)
Q Consensus 858 ---G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D---G~V~IWdl~~~ll~~L 915 (917)
..|.+.|+.++... .+... .......|+|||+.|+..+.+ ..+.+.++++.....|
T Consensus 346 ~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 346 KNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 36888898887653 34322 233468899999988765533 2366777777654444
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.7e-07 Score=91.77 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=118.2
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee-eeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-RSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.|....+..+.+.+..|.++-.+-+.+-.++.++++..||.+.+++.+.-..+ +.+........+.+....++.+.++.
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~ 151 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG 151 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC
Confidence 56666666777777788877777777777888999999999999997652111 11111111222333344555555443
Q ss_pred c-----ccEEEEEEeccCeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 642 W-----DSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 642 ~-----Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
. -+..++|+++..+....-..-.+.|++++-+|. .+.++.|+.||.+.+||.+.. .........|..+
T Consensus 152 ~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~------~~p~S~l~ahk~~ 225 (319)
T KOG4714|consen 152 CGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV------AMPVSLLKAHKAE 225 (319)
T ss_pred cceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc------cchHHHHHHhhhh
Confidence 1 234566666543322211222345999999985 456778889999999998765 2233345678999
Q ss_pred eEEEEEeC-CCCEEEEEECCCeEEEEECCC
Q psy3053 716 IKCLAISK-DNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 716 V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~ 744 (917)
+.-+-|+| ++..|+++++||.+.-||..+
T Consensus 226 i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999 568999999999999999875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.2e-05 Score=80.05 Aligned_cols=207 Identities=14% Similarity=0.069 Sum_probs=136.5
Q ss_pred EEEEeC-CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEe-CCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 585 AVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCIL-PDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 585 sv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~s-pd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++ .++++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 567887 66667776678999999988765433 22222 4566677 565 445555444 45559888865444332
Q ss_pred -----CCCceeEEEecCCCCEEEEEECC--------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 663 -----HEDAISCVAWDEKRKRLISGSWD--------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 663 -----H~~~Vt~l~~spd~~~L~Sgs~D--------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
.....+.+++.++|+..++.+.. |.|..++.. + ........-.....++|+|+++.|.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--------~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--------KVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--------EEEEEEEEESSEEEEEEETTSSEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C--------eEEEEecCcccccceEECCcchhee
Confidence 34567899999999977776644 456666654 2 1122222344578999999998775
Q ss_pred -EEECCCeEEEEECCCCee----eEEecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CceE
Q psy3053 730 -VGTEAGELIIWSLENHLM----TQQLSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-EKLL 801 (917)
Q Consensus 730 -sgs~dG~I~iwDl~~~~~----~~~l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-~~i~ 801 (917)
+-+..+.|..+++..... ...+.. ...+....+++..+|++.++....+.|.++|.. |+.+..+..+ ..++
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t 228 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT 228 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence 556778899998853211 122211 222347889999999988888889999999987 8888877776 6789
Q ss_pred EEEEe
Q psy3053 802 CLSWA 806 (917)
Q Consensus 802 ~l~~s 806 (917)
+++|.
T Consensus 229 ~~~fg 233 (246)
T PF08450_consen 229 NCAFG 233 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-06 Score=84.41 Aligned_cols=205 Identities=10% Similarity=0.014 Sum_probs=139.0
Q ss_pred EEEEeC-----CCcEEEEEecCCceEEEeccCCce-eeeeeccccceEEEE-EeCCCCEEEEEecccEEEEEEeccCeee
Q psy3053 585 AVAICG-----EGISVASVGRDAMLKIHSLKTGRQ-ERSAVLSSMTLSSLC-ILPDNCTMLVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 585 sv~fSp-----dg~~Lasgs~Dg~I~IWd~~t~~~-~~~~~~~~~~V~sl~-~spd~~~Lasgs~Dg~I~Iwdl~tg~~i 657 (917)
.+.|.| ...+||.||..|...+|...+.+. .+....+...|.-.. .+....-+..++.|.++++.+++.+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 445555 235899999999999999886543 233333333332211 1112234666788888888888765443
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
..+.-..-.+.+++++++++++++.+....|-.|.+........ ........+.-.+..|+.....+|+++.||++
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~----~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE----NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC 227 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee----eeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence 33322222388999999999999999999999999876521111 11233344556788999999999999999999
Q ss_pred EEEECCCCeeeEE----ecCCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCeEEEE
Q psy3053 738 IIWSLENHLMTQQ----LSDDINASVNGVLFSEDGC--RVLSCGNNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 738 ~iwDl~~~~~~~~----l~~~h~~~V~~v~fspdg~--~L~s~s~Dg~I~iwDl~tg~~i~~ 793 (917)
.|||++....... -.+.|.+.+..+.|++.|. +|...-.-+.+.+.|++++.....
T Consensus 228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 9999987644322 2346889999999998654 355555567899999998865543
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-06 Score=84.81 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=145.9
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
+|...+.-...+....|...|+-+.=..+ ...+..++.|.++++.+++.+..........-.+.++++++|++++++.+
T Consensus 98 ~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg 177 (344)
T KOG4532|consen 98 LFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG 177 (344)
T ss_pred eecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec
Confidence 44444333333444445554443322222 23466678899999998876554444333334478999999999999999
Q ss_pred cccEEEEEEeccC-e-eeE-EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 642 WDSCVVIYDVECG-R-IVT-ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg-~-~i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
....|..|.++.. + ... .....++.-.+..|+.....+|+++.||++.|||++....... ........|.+.+..
T Consensus 178 ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~--~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 178 DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA--EISSTRPHHNGAFRV 255 (344)
T ss_pred CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh--hhcccCCCCCCceEE
Confidence 9999999998753 2 223 2333455667889999999999999999999999987643222 122233458999999
Q ss_pred EEEeCCC--CEEEEEECCCeEEEEECCCCeeeEEecCC------CC-CCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 719 LAISKDN--NQLAVGTEAGELIIWSLENHLMTQQLSDD------IN-ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 719 l~~spdg--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~------h~-~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
+.|++.| ++|...-.-+.+.+.|++++...+.+... |. ..|....|+.++..+.+.+++ .+.-|++.+
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 9999866 56666666788999999998766555421 22 236667777766666555544 244454433
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-06 Score=91.79 Aligned_cols=279 Identities=13% Similarity=0.081 Sum_probs=182.5
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccC--C-ceeeeeeccccceEEEEEeCCCCEEEEEec-ccEEEEEEecc
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKT--G-RQERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVEC 653 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t--~-~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~t 653 (917)
.|.+.|+.+..+. .+++.+++.||.++.|.-.. | +.+..+..|...+.+++.+-++..+.+++. |..++++|+++
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4788888876554 46899999999999997543 1 234455667788899999999999999887 99999999987
Q ss_pred CeeeEEec--cCCCceeEEEecCC-CC-EEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 654 GRIVTELA--GHEDAISCVAWDEK-RK-RLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 654 g~~i~~l~--~H~~~Vt~l~~spd-~~-~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
-..+..++ .-.+.+.++. ++. .. .|+ +.-.+|.+.++|-.... ........-|..+|.++.+++.++.+
T Consensus 86 ~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~-----~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDF-----CQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred cchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCc-----CccceecccccCceEEEEeeccccce
Confidence 54432222 1222222211 221 11 233 33357889999965541 12223344588999999999999999
Q ss_pred EEEECCCeEEEEECCC------CeeeEEec--------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 729 AVGTEAGELIIWSLEN------HLMTQQLS--------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 729 asgs~dG~I~iwDl~~------~~~~~~l~--------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
++....|.|.-|.... .+....++ ........++.|+|+|..+.+-+.|..|++++.++|+.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999999998873 11111111 023456789999999999999999999999999998765432
Q ss_pred ec-----------C-----------------------CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec----
Q psy3053 795 VF-----------E-----------------------EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA---- 836 (917)
Q Consensus 795 ~~-----------~-----------------------~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~---- 836 (917)
.- . ..-..+.++..+.++.-+.-=-|.+.++.++.+++.+-.
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~i 319 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAI 319 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhh
Confidence 10 0 012334455444433333333478888888877665521
Q ss_pred --------------CC---------CceEEEeecCCEEEEEeCCCeEEEE
Q psy3053 837 --------------HK---------DAVLSLHFDNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 837 --------------h~---------~~V~sis~dg~~Lasgs~DG~I~Iw 863 (917)
+. .++....+|...++++-....++++
T Consensus 320 r~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 320 RFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 11 1111223366677777777778777
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-05 Score=81.67 Aligned_cols=207 Identities=14% Similarity=0.165 Sum_probs=130.9
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCC--ceeeeeec---cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTG--RQERSAVL---SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~~~~---~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
.++.+.+|+.||.. .|..|.|=...+. ..+.+... ..-.-.-++|+||+..||.+...|+|+++|+.... +..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 35778899877765 6777777665542 22222222 22335679999999999999999999999987533 223
Q ss_pred ecc-------CCCceeEEEecCC------CCEEEEEECCCeEEEEeCCCCC-CCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 660 LAG-------HEDAISCVAWDEK------RKRLISGSWDCTVRVWNTGASW-SHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 660 l~~-------H~~~Vt~l~~spd------~~~L~Sgs~DgtI~vWdl~~~~-~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+.. -..+|..+.|.+. ...|+.-..+|.++-+-+..+. ..........-...+...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 2356777777542 2256667788888877764321 1111111111122356789999999999
Q ss_pred CEEEEEECC----C-------eEEEEECCCCeeeEE--------------------e--------cCCCCCCeEEEEEec
Q psy3053 726 NQLAVGTEA----G-------ELIIWSLENHLMTQQ--------------------L--------SDDINASVNGVLFSE 766 (917)
Q Consensus 726 ~~Lasgs~d----G-------~I~iwDl~~~~~~~~--------------------l--------~~~h~~~V~~v~fsp 766 (917)
++|++|+.. + -+..|.+-++.+-.. + .......|..+..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 888877542 1 255665433211100 0 012345788888999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy3053 767 DGCRVLSCGNNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 767 dg~~L~s~s~Dg~I~iwDl~tg~~i~~ 793 (917)
||..|++...+|.|.+|++.+-.....
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 999999999999999999877655444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00028 Score=75.48 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=140.3
Q ss_pred EEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe-CCCCEEEEEECCCeEEEEECCCCe
Q psy3053 669 CVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLENHL 746 (917)
Q Consensus 669 ~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~dG~I~iwDl~~~~ 746 (917)
+++|.+ ++.++++--..+.|..|+..++ ... ...... ...+++. ++ ..++++...+ +.++|..+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--------~~~-~~~~~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--------EVE-VIDLPG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT--------EEE-EEESSS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC--------eEE-EEecCC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCc
Confidence 578887 5666666667899999998775 111 112222 6777888 55 4555555554 5556999886
Q ss_pred eeEEecC---C-CCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-E-E
Q psy3053 747 MTQQLSD---D-INASVNGVLFSEDGCRVLSCGNN--------CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-V-I 812 (917)
Q Consensus 747 ~~~~l~~---~-h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-l-v 812 (917)
....... . .....+.+++.|+|++.++.... |.+..++.. ++.......-...+.+++++++. + +
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheee
Confidence 5444432 1 45678899999999977766543 568888877 65554444556678999998874 4 4
Q ss_pred EEeCCCeEEEEECCC--CE-----EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 813 LGGALGMVYLVDLIQ--VQ-----LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~--~~-----~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
+-+..+.|..+++.. .. ....+....+..-.+ ..+|++.++....+.|.+++.+ |+.+..+......+++
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN 229 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence 556778999999853 21 122222222224444 5578888887788999999987 9888888766568999
Q ss_pred EEE-cCCCCEEEEEe
Q psy3053 884 VAW-DEKRKRLISGN 897 (917)
Q Consensus 884 laf-Spdg~~LaSgs 897 (917)
++| .++.+.|+..+
T Consensus 230 ~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEESTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999 46766666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=96.69 Aligned_cols=161 Identities=8% Similarity=0.088 Sum_probs=115.2
Q ss_pred EEEEEeCCCCEEEEEecccEEEEEEeccCee----eEEeccCCCceeEEEecCCCCEEEEE---ECCCeEEEEeCCCCCC
Q psy3053 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISG---SWDCTVRVWNTGASWS 698 (917)
Q Consensus 626 ~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~----i~~l~~H~~~Vt~l~~spd~~~L~Sg---s~DgtI~vWdl~~~~~ 698 (917)
.....+++++++|++..+....+++...... ..... -...-+++.+..+......+ +....+.+|....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc--
Confidence 3445677888999998888877777654332 22221 12223344444333443333 33445555554432
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
......+|-+.++.++++||+++++++..|+.|++-.......+..+.-+|..-|..++.-++ ..|+++|.|+
T Consensus 143 ------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~ 215 (390)
T KOG3914|consen 143 ------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK 215 (390)
T ss_pred ------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence 344467899999999999999999999999999998888777777777789999999998765 4699999999
Q ss_pred eEEEEECCCCeEEEEeec
Q psy3053 779 MLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~~ 796 (917)
++++||+.+|+.+.....
T Consensus 216 tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cEEEEecccCCcccccch
Confidence 999999999988765443
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=91.69 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=111.9
Q ss_pred eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe---EEEEECCC
Q psy3053 668 SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE---LIIWSLEN 744 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~---I~iwDl~~ 744 (917)
..+..++.++++|.+..+....++++..... ...+..........+++.+..+...+..+...|. +.+|....
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 3445567777888877777777777655421 1122222233334455555555555555544444 45555444
Q ss_pred CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE--eecCCceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVFEEKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~--~~~~~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
+.....+ +|-..+..++++||+++++++..|..|++-.....-.+.. ..|..-|..++..++..+++|+.|+++++
T Consensus 142 ~~~~~~l--GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPIL--GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhh--hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEE
Confidence 4444333 7889999999999999999999999999987765544444 34566788999988878999999999999
Q ss_pred EECCCCEEEEEEe
Q psy3053 823 VDLIQVQLLKQVR 835 (917)
Q Consensus 823 wdl~~~~~i~~l~ 835 (917)
||+.+|+.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999886654
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=99.39 Aligned_cols=208 Identities=13% Similarity=0.182 Sum_probs=142.9
Q ss_pred eeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCce-eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGRQ-ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~-~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
-..+.+|..+|+.+.|.|.. ..+++++.|..+..||+.+... ..+...-..+.+.++|+-....+.+.+..+.|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 35678999999999999976 5788999999999999976543 344444344567788987666666667778899999
Q ss_pred eccC-eeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 651 VECG-RIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 651 l~tg-~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
...| ..+..+++|...|..++|.. ....+.+++.||+|+.||.+.... ..........+|.--.+.|-|.-.
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~------e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT------ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc------ccceeccccCcceeccccccCcee
Confidence 9865 56788999999999999864 345788999999999999876521 112222334455555555533222
Q ss_pred EE-----------EECCCeEEEEECCC-CeeeEEecCCCCCCeEEEEEecCC----------CEEEEEeCCCeEEEEECC
Q psy3053 729 AV-----------GTEAGELIIWSLEN-HLMTQQLSDDINASVNGVLFSEDG----------CRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 729 as-----------gs~dG~I~iwDl~~-~~~~~~l~~~h~~~V~~v~fspdg----------~~L~s~s~Dg~I~iwDl~ 786 (917)
.+ -..+.....|+..+ .+++..+. +|.+.|....|-..+ -.|++=+.|.++++|-+.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 11 11112222333332 35677777 888877766664322 268999999999999875
Q ss_pred C
Q psy3053 787 T 787 (917)
Q Consensus 787 t 787 (917)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 4
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-06 Score=96.98 Aligned_cols=296 Identities=16% Similarity=0.185 Sum_probs=162.7
Q ss_pred EEEeCCCcEEEEEe----cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 586 VAICGEGISVASVG----RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 586 v~fSpdg~~Lasgs----~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
..|+|...+++.++ ..|+|.||- ++|++.+....+ -.+++++|+|..-.|+.|-.-|.+.+|...+.+......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 34566666665554 467888884 667655443321 235679999999899999999999999998887777777
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC------EEEEEECCC
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN------QLAVGTEAG 735 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~------~Lasgs~dG 735 (917)
.|+.+|..+.||++|..++|+..-|.|.+|...... ............+..-...|...++++. ..++++.+.
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g-~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~ 177 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG-EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDES 177 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc-ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchh
Confidence 899999999999999999999999999999876321 1111111111111122234555566632 123333332
Q ss_pred eEE-EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC-CEEEE
Q psy3053 736 ELI-IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE-EKVIL 813 (917)
Q Consensus 736 ~I~-iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~-~~lv~ 813 (917)
.+- .++.+.....+... +. =.|+|..++.++.+|+|+..|- +|........++.| .+-|.+. ..+++
T Consensus 178 alD~~fnwk~~~a~rs~~--ks-------gv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~v-QmLf~~~~eai~~ 246 (1416)
T KOG3617|consen 178 ALDEPFNWKESLAERSDE--KS-------GVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSEV-QMLFMGYCEAISI 246 (1416)
T ss_pred hhcccccCccchhhcccc--cc-------CCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccchH-HHHHhcccceEEE
Confidence 221 22221111111111 11 1468889999999999998884 34444333333321 1112211 11222
Q ss_pred EeCCCeEEEEEC-CCCEEE----EEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 814 GGALGMVYLVDL-IQVQLL----KQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 814 gs~dG~I~vwdl-~~~~~i----~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
...+-++.++-. .+|... ..+.+..+. -.|. ++++-..|.++ ......+. ....+++++++.
T Consensus 247 i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg-----rqGg-iA~sEssGvLr------~~eKyg~e-~ge~~~c~cY~~ 313 (1416)
T KOG3617|consen 247 IIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG-----RQGG-IACSESSGVLR------KSEKYGLE-LGEGILCMCYGE 313 (1416)
T ss_pred EeeeceeeEEEecCCCchHHhhhhhhccccCC-----ccCc-ccccccccccc------CCcchhhh-cCCceEEEEEec
Confidence 222222222211 111110 000110000 0122 44444444111 11111111 245689999999
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q psy3053 889 KRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 889 dg~~LaSgs~DG~V~IWdl~ 908 (917)
.+..|+.|...|.+.+|.-.
T Consensus 314 ~~~~l~agt~~gnv~~w~~v 333 (1416)
T KOG3617|consen 314 KEIRLWAGTKEGNVTIWLDV 333 (1416)
T ss_pred cceEEEecccCCcEEEeeec
Confidence 99999999999999999643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00013 Score=76.32 Aligned_cols=231 Identities=14% Similarity=0.165 Sum_probs=132.1
Q ss_pred EEEeCCCCEEEEEecccEEEEEEeccC--eeeEEeccCC---CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 628 LCILPDNCTMLVGCWDSCVVIYDVECG--RIVTELAGHE---DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 628 l~~spd~~~Lasgs~Dg~I~Iwdl~tg--~~i~~l~~H~---~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
++.+.+|+.||+- .|..|-|=...+. ..+....-.. -.=..++|+||+..||.+...|+|+++|+........+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 4556777766654 3555555444332 2222222222 23467999999999999999999999998764311111
Q ss_pred CcceeeeccCCCceEEEEEeCCC------CEEEEEECCCeEEEEECCC-----CeeeE--EecCCCCCCeEEEEEecCCC
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDN------NQLAVGTEAGELIIWSLEN-----HLMTQ--QLSDDINASVNGVLFSEDGC 769 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg------~~Lasgs~dG~I~iwDl~~-----~~~~~--~l~~~h~~~V~~v~fspdg~ 769 (917)
... .........|..+.|.+.. ..|++-..+|.++-|-+.. .+... .+...+...|.++.++|..+
T Consensus 82 p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 82 PAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred ccc-ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 111 1122334567777775432 2455566777777665432 12222 23334577999999999988
Q ss_pred EEEEEeCCCe-----------EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCe------EEEEECCCCEEEE
Q psy3053 770 RVLSCGNNCM-----------LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGM------VYLVDLIQVQLLK 832 (917)
Q Consensus 770 ~L~s~s~Dg~-----------I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~------I~vwdl~~~~~i~ 832 (917)
+|++||.... +..|.+-++.+ .-..++...++. -.+|.+.+.+...
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------------yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------------YYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCC-----------------cEEEccccCccccccccccceeeccceeeee
Confidence 8888775321 23333322221 111222222211 1233333322222
Q ss_pred EEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 833 QVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 833 ~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
........|..| +|||..||+...+|.|.+|++.+-++.+.+..+
T Consensus 224 ~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 224 RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 222234555544 999999999999999999999888777666543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-06 Score=87.57 Aligned_cols=241 Identities=15% Similarity=0.246 Sum_probs=157.2
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce-----eeeeeccc------------cceEEEEEeCCC--CEEEE
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ-----ERSAVLSS------------MTLSSLCILPDN--CTMLV 639 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~-----~~~~~~~~------------~~V~sl~~spd~--~~Las 639 (917)
..+.|++|.|...|.++++|...|.|.++.-+.... ...++.|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 356799999999999999999999999997654321 12233332 346677787654 36777
Q ss_pred EecccEEEEEEeccCee-------------------------------------eE-----Ee-ccCCCceeEEEecCCC
Q psy3053 640 GCWDSCVVIYDVECGRI-------------------------------------VT-----EL-AGHEDAISCVAWDEKR 676 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~-------------------------------------i~-----~l-~~H~~~Vt~l~~spd~ 676 (917)
.+.|.+|++|.+..... +. .. ..|.--|.++.+..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998743200 00 01 2477778899998888
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC-----CCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeee--
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL-----DNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMT-- 748 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~-- 748 (917)
..++++ .|-.|.+|+++-... ...+.....| ..-|++..|+|.. ..+..++..|.|++-|++.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~----sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG----SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred heeeec-cceeeeeccccccCC----ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 888775 478899999865421 1222222222 2357888999965 56677788999999999843211
Q ss_pred ----EE--ec-------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEeecC-------------Cce-
Q psy3053 749 ----QQ--LS-------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFE-------------EKL- 800 (917)
Q Consensus 749 ----~~--l~-------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~-------------~~i- 800 (917)
.. +. .+....|..+.|+++|+++++-+. -++++||++.. .++.+.... ..|
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcccee
Confidence 00 00 122357889999999999987654 48999999754 344444211 112
Q ss_pred --EEEEEeCC-CEEEEEeCCCeEEEEEC
Q psy3053 801 --LCLSWAGE-EKVILGGALGMVYLVDL 825 (917)
Q Consensus 801 --~~l~~s~~-~~lv~gs~dG~I~vwdl 825 (917)
..+.++++ ..+++|+..+..-++-.
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eeEEEEecCCcccccccccccceeeecc
Confidence 23556654 35677777776666653
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00041 Score=74.78 Aligned_cols=232 Identities=13% Similarity=0.089 Sum_probs=149.0
Q ss_pred EEEEEeC-CCcEEEEEecCCc-eEEEeccCCceeeeeeccccce--EEEEEeCCCCEEEEE-----ecccEEEEEEec-c
Q psy3053 584 TAVAICG-EGISVASVGRDAM-LKIHSLKTGRQERSAVLSSMTL--SSLCILPDNCTMLVG-----CWDSCVVIYDVE-C 653 (917)
Q Consensus 584 tsv~fSp-dg~~Lasgs~Dg~-I~IWd~~t~~~~~~~~~~~~~V--~sl~~spd~~~Lasg-----s~Dg~I~Iwdl~-t 653 (917)
..++.+| .+..++.+-.-|+ ..+||..+++....+....+.- -.-+|++||++|.+. +..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4577788 4455666666665 6789999998877665433221 235699999999886 446899999999 6
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEEC------------------CCeEEEEeCCCCCCCccCCcceeee--ccCC
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSW------------------DCTVRVWNTGASWSHMKPSKSLVSQ--LDLD 713 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~------------------DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~ 713 (917)
-+.+..+..|.-.-..+.+.||++.|+.+.. +.++..-|..++. ....... ..|.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-----ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-----LLEQVELPPDLHQ 162 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-----eeeeeecCccccc
Confidence 6778888888777788899999988877631 1122233333321 0011111 2356
Q ss_pred CceEEEEEeCCCCEEEEEECCCe-------EEEEECCCCeeeEEec------CCCCCCeEEEEEecCCCEEEEEe-CCCe
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGE-------LIIWSLENHLMTQQLS------DDINASVNGVLFSEDGCRVLSCG-NNCM 779 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~-------I~iwDl~~~~~~~~l~------~~h~~~V~~v~fspdg~~L~s~s-~Dg~ 779 (917)
-.+..++++++|..++..-..|. +.+++.. ..+..+. ....+.+-+|+++++|..+++++ ..+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 67999999999887766544432 3344332 2222222 12357899999999998876555 6778
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEE
Q psy3053 780 LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVD 824 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwd 824 (917)
+.+||..++..+....... +..++..+++ +++++..|.+...+
T Consensus 241 ~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred EEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCCccEEEcc
Confidence 9999999998876554432 4455555665 55555555544443
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.3e-06 Score=95.91 Aligned_cols=181 Identities=17% Similarity=0.292 Sum_probs=137.4
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 713 DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
...++|++++ ++.++.|+.+|.+++++....- .+.. .|... ..+|.++++|+.||++.|-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~-~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNF-DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--cccc-ccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3456777776 6789999999999999876432 2222 23332 5689999999999999999999999999
Q ss_pred EeecCCceEEEEEeCC------CEEEEEeCCCeEEEEECCCC--EEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 793 NKVFEEKLLCLSWAGE------EKVILGGALGMVYLVDLIQV--QLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~------~~lv~gs~dG~I~vwdl~~~--~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
...+..++.+++++|+ +.+++|+..| +.++.-.-. +....+....++|.+++|.|+++|=++.+| |+|||
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYD 185 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEe
Confidence 9999999999999986 5689999998 777754322 111245566899999999999999999888 99999
Q ss_pred CcCCeEEEEecCCCCC------EEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 865 VECGRIVTELAGHEDA------ISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~------V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+.+++.+..++..... -..+.|.++. .|+.| +..+|+|..+.
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 9999988877643333 2457787664 44444 33468888876
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00029 Score=72.43 Aligned_cols=262 Identities=15% Similarity=0.056 Sum_probs=144.0
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEE
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 670 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l 670 (917)
-|++++.|+..|.+.+.+..+|.+...+...+.--......+++..+.+|+.|++.+..|..+..++...+-..+.-.+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 46789999999999999999998877666543322334467899999999999999999999988887765433333344
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE--EEEeCCCCEEEEEECCCeEEEEECCCCeee
Q psy3053 671 AWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC--LAISKDNNQLAVGTEAGELIIWSLENHLMT 748 (917)
Q Consensus 671 ~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~--l~~spdg~~Lasgs~dG~I~iwDl~~~~~~ 748 (917)
+..+....|..+...|.|.--....... ...-.....+++.+ ++. +..+..++-||.+.-+| ..|+.+
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~------~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qv 211 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSS------TEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQV 211 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCc------ceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEE
Confidence 4555344555566666665544433310 00001111122211 111 34456666777777777 556666
Q ss_pred EEecCCCCCCeEE-EEEe-cCCCEEEEEeCCCe--------EEEEECCCCeEEEEeecCCceEEEEEe-----CCCEEEE
Q psy3053 749 QQLSDDINASVNG-VLFS-EDGCRVLSCGNNCM--------LNVYDLTTGMQVCNKVFEEKLLCLSWA-----GEEKVIL 813 (917)
Q Consensus 749 ~~l~~~h~~~V~~-v~fs-pdg~~L~s~s~Dg~--------I~iwDl~tg~~i~~~~~~~~i~~l~~s-----~~~~lv~ 813 (917)
.+.. ..++|.. -+-+ |..+.+..+..+.. -.+|..++|........+ . ..+++. .+..+..
T Consensus 212 wr~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p-~-l~F~~h~~~~S~~~ll~~ 287 (354)
T KOG4649|consen 212 WRPA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP-K-LRFDLHSPGISYPKLLRR 287 (354)
T ss_pred Eeec--CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc-c-cceeccCCCCcchhhhhh
Confidence 6543 2233221 0111 33333433333322 234555555322211111 0 111111 1224556
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE-----------ee--cCCEEEEEeCCCeEEEEECcCC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-----------HF--DNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si-----------s~--dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
++.||.+.+.-.+. .+.+...|.+.+..+ +| -+..|+.|+.|..|+-||+.++
T Consensus 288 ~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 288 SSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 78889888874432 233333333332222 22 1345788899999999999865
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=85.47 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=151.0
Q ss_pred eEEEeccCCceeeeeeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCC-CCEEEE
Q psy3053 604 LKIHSLKTGRQERSAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-RKRLIS 681 (917)
Q Consensus 604 I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd-~~~L~S 681 (917)
+++.+..+-+....+..+...|.+++|+|... ++..++.+..|+|.|+++...+..+..| ..+++++|.-| .++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 45555555555555667778899999999877 7888999999999999999999988888 78999999865 457788
Q ss_pred EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE------EEeCCCCEEEEEECCCeEEEEECC--CCeeeEEecC
Q psy3053 682 GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL------AISKDNNQLAVGTEAGELIIWSLE--NHLMTQQLSD 753 (917)
Q Consensus 682 gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l------~~spdg~~Lasgs~dG~I~iwDl~--~~~~~~~l~~ 753 (917)
|-..|.|.++|++........ ... .-...+|..+ ...+.|.+++.++.+ +..|... .+.....+..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e---~~a-~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLME---LVA-NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhh---hhh-hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 889999999999876322110 000 0112223332 233445566555544 4445433 2222222222
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCC-------eEE-EEECCCCeEEEEee--c-CCceE------EE-EEeCCCE-EEEE
Q psy3053 754 DINASVNGVLFSEDGCRVLSCGNNC-------MLN-VYDLTTGMQVCNKV--F-EEKLL------CL-SWAGEEK-VILG 814 (917)
Q Consensus 754 ~h~~~V~~v~fspdg~~L~s~s~Dg-------~I~-iwDl~tg~~i~~~~--~-~~~i~------~l-~~s~~~~-lv~g 814 (917)
+..+...++...+..+.++.....+ .+- --|..+|..++... + ++... .+ +.-.++. +.+|
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEec
Confidence 3345555666666445554433220 011 11223444443221 1 11110 11 1112223 3345
Q ss_pred eCCCeEEEEECCCCEEEEEEecCCCceEEEee---cCCEEEEEeCCCeEEEEECc
Q psy3053 815 GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF---DNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 815 s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~---dg~~Lasgs~DG~I~Iwdl~ 866 (917)
++...+.+||..++..+.++.-. .+|..+.| ++.-++..-.|..++|+..+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred CCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 66689999999999999888654 77888855 44444444456678888754
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.8e-07 Score=105.73 Aligned_cols=262 Identities=15% Similarity=0.123 Sum_probs=170.0
Q ss_pred eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC--eEEEEe
Q psy3053 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC--TVRVWN 692 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg--tI~vWd 692 (917)
.+++..+....+|++|+.+.+.|++|+..|.|+++++.+|.......+|.++|+-+.-+.+|..+++.+.-. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 345666778899999999999999999999999999999999999999999999999999998877765433 467899
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC---CCCCeEEEEEecCCC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD---INASVNGVLFSEDGC 769 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~---h~~~V~~v~fspdg~ 769 (917)
..+.. .... .-..-.++.|+.....-+.|+......+||+.++..+.++..+ ....-+++.|+|+..
T Consensus 1174 ~~s~~-------~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1174 ASSTG-------GPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ccccc-------Cccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 86531 1111 1123457788876666667777778999999999877764322 222346788999988
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecC
Q psy3053 770 RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDN 848 (917)
Q Consensus 770 ~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg 848 (917)
+++- || .+||++..+.+..+..-..-..=.|+|+|. ++..+ .+||+++.+.++..+.-...-......|
T Consensus 1244 LIln---dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQCAVTFNSTG 1313 (1516)
T ss_pred eEee---Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCccccceEEEeccCc
Confidence 7764 55 479998776655443222222223555544 33332 4899999887776654332222222233
Q ss_pred CEEEEEe-----C-C-----------CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 849 CTMLVGC-----W-D-----------SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 849 ~~Lasgs-----~-D-----------G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
..+.+.- . | .+.+-++...-..+.++.+ ...|..++-+|...+|...-
T Consensus 1314 ~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1314 DVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred cchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEEe
Confidence 3332221 0 0 1223334444445555543 34566777777777776543
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.2e-06 Score=95.40 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=136.2
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEE
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 670 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l 670 (917)
++..++.|+-...+..+|+.+.+..+........|.-+ ..+++.+.+|...|+|.+-|..+.+.++++.+|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 34557777777778888998888777776666555444 3577899999999999999999999999999999999887
Q ss_pred EecCCCCEEEEEEC---------CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEE
Q psy3053 671 AWDEKRKRLISGSW---------DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIW 740 (917)
Q Consensus 671 ~~spd~~~L~Sgs~---------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iw 740 (917)
.. .|+.|+|+|. |.-|+|||++..... ..........-+.|+|.- ..+++++..|...+.
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--------~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--------SPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--------CCcccccCchhhhhcccccceEEEEecccceeec
Confidence 66 5689999985 556899999875211 111122222456677753 577888899999999
Q ss_pred E---CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q psy3053 741 S---LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 741 D---l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwD 784 (917)
| +.+...-..........+..+.+|++|..++.+..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9 4443222222224556699999999999999999999999997
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.8e-05 Score=87.65 Aligned_cols=212 Identities=17% Similarity=0.203 Sum_probs=141.2
Q ss_pred EEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCc-eeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCCccC
Q psy3053 629 CILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-ISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWSHMKP 702 (917)
Q Consensus 629 ~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~~~~~ 702 (917)
+|++.+..+|.|+.+|.|.+.+-. -+.++.++++... |..+....+.++|++.+.|+ .+++|+++.......
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 367888899999999998877643 3444667777766 66665555557898888775 499999976532211
Q ss_pred Cccee---eecc-----CCCceEEEEEeCCCCEEEEEECCCeEEEEECC---CCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 703 SKSLV---SQLD-----LDNRIKCLAISKDNNQLAVGTEAGELIIWSLE---NHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 703 ~~~~~---~~~~-----h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~---~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
+.+. ...+ ...++.+++++.+-+.+|+|-.+|.|..+.=+ ..............+|+++++..+++.+
T Consensus 108 -P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 -PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred -cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 1111 1122 35678999999999999999999999988421 1111222333567899999999999884
Q ss_pred EEEeCCCeEEEEECCCCeE-EE-EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-cCCCceEE
Q psy3053 772 LSCGNNCMLNVYDLTTGMQ-VC-NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLS 843 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~-i~-~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~h~~~V~s 843 (917)
+-+..-..|.+|.+....+ .. .-.++....|.++++...-+.++.+..+.+|+....++-..+. +|......
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4444455789999874442 22 2234566888888876553444455679999988766666665 55444433
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=90.62 Aligned_cols=166 Identities=14% Similarity=0.214 Sum_probs=125.3
Q ss_pred EEEEeCC--CCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCc
Q psy3053 627 SLCILPD--NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 627 sl~~spd--~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
.|+|+-+ +-. ++.+.+-.|-+-|+++|-.. .+. ..+.|.++.|...++.+..|.+.|.|...|++.... ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq---G~~ 289 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ---GNG 289 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc---CCC
Confidence 3456532 333 55566777889999987542 333 567899999998899999999999999999987621 222
Q ss_pred ceeeeccCCCceEEEEEeC-CCCEEEEEECCCeEEEEECCCCee---eEEecCCCCCCe--EEEEEecCCCEEEEEeCCC
Q psy3053 705 SLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELIIWSLENHLM---TQQLSDDINASV--NGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~~~---~~~l~~~h~~~V--~~v~fspdg~~L~s~s~Dg 778 (917)
......-|++.|+|+..-. ++..|.+.+.+|.|.+||++--+. +.+.. +|...- .-+...+....+++++.|.
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEccCee
Confidence 3445567999999998877 788999999999999999987666 67766 554322 2234456677888999999
Q ss_pred eEEEEECCCCeEEEEeecCCc
Q psy3053 779 MLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~~~~~ 799 (917)
..++|.++.|..+.+...+..
T Consensus 369 ytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEEEEecccCceeeccCCCCc
Confidence 999999999999988776544
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-06 Score=90.63 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=158.2
Q ss_pred cccceeeeccCCcceEEEEEeCCCcEEEEEec-CCceEEEeccCCceeeeeeccccceEEEEEeCCC---CEEEEE-ecc
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGISVASVGR-DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN---CTMLVG-CWD 643 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~---~~Lasg-s~D 643 (917)
+.+.+..+..|-+.|.+++.+-+|.++.|++. |..++++|+++-..+.-+....-+-.+..+...| ..++++ -.+
T Consensus 42 GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 42 GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKS 121 (558)
T ss_pred ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccC
Confidence 45566678899999999999999999999888 9999999998765553333332222222222223 134433 457
Q ss_pred cEEEEEEeccCe-e-eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC--------ccCCcceeeeccCC
Q psy3053 644 SCVVIYDVECGR-I-VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH--------MKPSKSLVSQLDLD 713 (917)
Q Consensus 644 g~I~Iwdl~tg~-~-i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~--------~~~~~~~~~~~~h~ 713 (917)
|.+.++|-..+. . ...-.-|..+|.++.+.+.+..+++....|.|.-|........ .+....+.......
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 889999866443 2 2233459999999999999999999999999999998741110 01111122233445
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC-------------------------------C-CCCeEE
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD-------------------------------I-NASVNG 761 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~-------------------------------h-~~~V~~ 761 (917)
...+++.|+|+|..+.+-+.|..|++++..+|+.++.+... + ...-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 67889999999999999999999999999998766544310 1 112345
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 762 VLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 762 v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+.|...|++|+.++-=| |++.++.++.......
T Consensus 282 ~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred eEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 77888899998887654 8888988887766554
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-05 Score=84.22 Aligned_cols=249 Identities=12% Similarity=0.032 Sum_probs=153.1
Q ss_pred ccceeeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCC-CEEEEEecccEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN-CTMLVGCWDSCVV 647 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~ 647 (917)
+++.+.+.+|...|..++|||..+ ++..++.+..|+|.|+++...+.+...+ ..+++|+|.-|. .+|.+|-..|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 455667888999999999999887 7888999999999999998888888777 789999998765 5677788899999
Q ss_pred EEEeccCee-eEEecc--CCCceeEEEe------cCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 648 IYDVECGRI-VTELAG--HEDAISCVAW------DEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 648 Iwdl~tg~~-i~~l~~--H~~~Vt~l~~------spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
+||+...+- ...+.+ ...+|..++. .+.+..|+.++.+ ...|+....... .......+..+...+
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~----~p~vlele~pG~cis 335 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC----LPCVLELEPPGICIS 335 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC----CCcccccCCCcceee
Confidence 999986432 222222 1233444333 2334455554443 567776543211 122223344555666
Q ss_pred EEEeCCCCEEEEEECCC-------eEE-EEECCCCeeeEEecCCC-CCC------eEEEEEecCCCEEE-EEeCCCeEEE
Q psy3053 719 LAISKDNNQLAVGTEAG-------ELI-IWSLENHLMTQQLSDDI-NAS------VNGVLFSEDGCRVL-SCGNNCMLNV 782 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG-------~I~-iwDl~~~~~~~~l~~~h-~~~------V~~v~fspdg~~L~-s~s~Dg~I~i 782 (917)
++.++..+.++...... .+. --|-.+|..+......+ ++. -..+.-.++.++++ +++..+.+.+
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil 415 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL 415 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence 66666555554433220 011 11223333333222222 111 11122234445544 4455678999
Q ss_pred EECCCCeEEEEeecCCceEEEEEeC--CCEEEEEeCCCeEEEEEC
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWAG--EEKVILGGALGMVYLVDL 825 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s~--~~~lv~gs~dG~I~vwdl 825 (917)
||..+++.+..+....++..++... .+.+++.-.|..++++..
T Consensus 416 ~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 416 QDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred eccchhheeeecccCcceeecceeecCCcchhhheecceEEEEec
Confidence 9999999999999999988877652 224555555667777654
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-05 Score=89.81 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=130.1
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
..++|++++ ++.++.|+.+|.|++.+.... . .+...|... ..+|.+++|||.||+|.|-.+.+.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~------ 103 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD------ 103 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCC------
Confidence 445666664 578999999999999987643 2 333345443 568999999999999999988765
Q ss_pred CcceeeeccCCCceEEEEEeCC-----CCEEEEEECCCeEEEEECCC---CeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKD-----NNQLAVGTEAGELIIWSLEN---HLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spd-----g~~Lasgs~dG~I~iwDl~~---~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
..........++.+++++|+ .+.+++|+..| +.++.-+- ...+ .+. ...++|.++.|. |.++|-+
T Consensus 104 --~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~-~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 104 --DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS-EGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred --ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee-cCccceEEEEec--CcEEEEe
Confidence 33334566788999999997 57899999998 77765331 1112 222 567899999995 6788888
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCc-------eEEEEEeCCCEEEEEeCCCeEEEEECC
Q psy3053 775 GNNCMLNVYDLTTGMQVCNKVFEEK-------LLCLSWAGEEKVILGGALGMVYLVDLI 826 (917)
Q Consensus 775 s~Dg~I~iwDl~tg~~i~~~~~~~~-------i~~l~~s~~~~lv~gs~dG~I~vwdl~ 826 (917)
+.+| +++||+.+++.+..+..+.. ...+.|.++..++.|-.+ +|++..++
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 7776 89999999988877654432 345788888777776554 67777766
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00036 Score=82.49 Aligned_cols=275 Identities=12% Similarity=0.113 Sum_probs=162.3
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCC------ce-e-EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcc
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHED------AI-S-CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~------~V-t-~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~ 705 (917)
+..+.+++.++.+.-.|..+|+.+........ .+ . .++.. ++..++.++.+|.|.-+|..++....+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44667777889999999999988877654322 01 0 11111 2267888889999999999887422211000
Q ss_pred eeeeccCCCceE-EEEEeCCCCEEEEEE---------CCCeEEEEECCCCeeeEEecCCCCC------------------
Q psy3053 706 LVSQLDLDNRIK-CLAISKDNNQLAVGT---------EAGELIIWSLENHLMTQQLSDDINA------------------ 757 (917)
Q Consensus 706 ~~~~~~h~~~V~-~l~~spdg~~Lasgs---------~dG~I~iwDl~~~~~~~~l~~~h~~------------------ 757 (917)
.. ......+. +..+. +..+++++ .+|.+..+|..+|+.+.........
T Consensus 140 ~~--~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 140 DQ--VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CC--cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 00 00000011 11121 24455554 3688999999999988876532110
Q ss_pred -Ce-EEEEEecCCCEEEEEeCCC------------------eEEEEECCCCeEEEEeecCCc------e------EEEE-
Q psy3053 758 -SV-NGVLFSEDGCRVLSCGNNC------------------MLNVYDLTTGMQVCNKVFEEK------L------LCLS- 804 (917)
Q Consensus 758 -~V-~~v~fspdg~~L~s~s~Dg------------------~I~iwDl~tg~~i~~~~~~~~------i------~~l~- 804 (917)
.+ ...++.+.+..++.++.++ .+.-+|..+|+.......... . ..+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 01 1244555566777777665 799999999998877543211 0 0110
Q ss_pred EeCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEE------------------eCCCeEEEEE
Q psy3053 805 WAGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVG------------------CWDSCVVIYD 864 (917)
Q Consensus 805 ~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasg------------------s~DG~I~Iwd 864 (917)
.++. ..+++++.+|.+...|..+|+.+-........ ++.+...++.+ ..+|.+.-.|
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~---~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP---MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc---cccCCceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 1121 24778889999999999999988765421111 11122333332 2467888999
Q ss_pred CcCCeEEEEecCCC--------CCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 865 VECGRIVTELAGHE--------DAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 865 l~tg~~l~~l~~h~--------~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
..+|+.+.+..... .+...-.....+..|+.++.||.|+.+|.+ +..+.+..
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 99999887665321 111110111256788999999999999986 44665543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-06 Score=62.89 Aligned_cols=39 Identities=28% Similarity=0.596 Sum_probs=37.1
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 868 GRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 868 g~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
|+++.++.+|.++|++++|+|++.+|+||+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=75.38 Aligned_cols=288 Identities=17% Similarity=0.123 Sum_probs=158.6
Q ss_pred eCCCcEEEEEe---------cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 589 CGEGISVASVG---------RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 589 Spdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.+|... ++.|++++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57787776532 346788999998765543333 56788899999999998876 67899999887754432
Q ss_pred ec-c-------C---------CCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCccCCcceeeeccCC---CceEE
Q psy3053 660 LA-G-------H---------EDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMKPSKSLVSQLDLD---NRIKC 718 (917)
Q Consensus 660 l~-~-------H---------~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~~~~~~~~~~~h~---~~V~~ 718 (917)
-. | - -+.-.++-||||+++|+....| ..|+.+.+... .... ..+..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~-------------~~~~~~yp~~~~ 145 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY-------------SPPDSQYPEVES 145 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE-------------SSSTESS-EEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc-------------CCccccCCcccc
Confidence 21 1 0 1223568899999999887644 34444432111 1111 12334
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec----CCCCCCeEEEEEecCCCEEEEEe--CC---CeEEEEECCCCe
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS----DDINASVNGVLFSEDGCRVLSCG--NN---CMLNVYDLTTGM 789 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~----~~h~~~V~~v~fspdg~~L~s~s--~D---g~I~iwDl~tg~ 789 (917)
+.+-.-|.--.. -.+.++|+.+++....-. ......+..+.|++++..++..- .+ ..+.+.|..++.
T Consensus 146 ~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 146 IRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp EE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred cccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence 443323322111 247778888886542221 13456788999999998454433 22 246677887664
Q ss_pred EE--EEeecCCce---EEEEEe---CCCEEEEEeCCC--eEEEEECCCCEEEEEEecCCCceEEE---eecCCEE-EEEe
Q psy3053 790 QV--CNKVFEEKL---LCLSWA---GEEKVILGGALG--MVYLVDLIQVQLLKQVRAHKDAVLSL---HFDNCTM-LVGC 855 (917)
Q Consensus 790 ~i--~~~~~~~~i---~~l~~s---~~~~lv~gs~dG--~I~vwdl~~~~~i~~l~~h~~~V~si---s~dg~~L-asgs 855 (917)
.. ......+-+ ....+. ++..+.....+| .|.+++...+.. ..+....-.|..+ +.+++.| ++|.
T Consensus 222 ~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 222 TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEec
Confidence 32 222222221 233332 333455555666 466667666663 3555555556554 4555554 4555
Q ss_pred CCC----eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q psy3053 856 WDS----CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896 (917)
Q Consensus 856 ~DG----~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg 896 (917)
.++ .+..-++..+..+..+....+.-..+.|||+|++++-.
T Consensus 301 ~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 301 GDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 432 45555666234455555444333789999999988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=90.16 Aligned_cols=141 Identities=19% Similarity=0.283 Sum_probs=107.6
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC-CCEEEEEeCCCeEEEEECCCC-----EEEEEEecCCCceEEE-
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQV-----QLLKQVRAHKDAVLSL- 844 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~-----~~i~~l~~h~~~V~si- 844 (917)
++.+.+..+-+-|+.+|... .+...+.|.+..|.. ++.++.|+.+|.|..+|++.+ .+...+ -|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhh
Confidence 45566677888888887543 334566777777776 557889999999999999865 233333 488999998
Q ss_pred --eecCCEEEEEeCCCeEEEEECcCCeE---EEEecCCCCCEEEE--EEcCCCCEEEEEeCCCcEEEEecC-cceEEE
Q psy3053 845 --HFDNCTMLVGCWDSCVVIYDVECGRI---VTELAGHEDAISCV--AWDEKRKRLISGNLVGAPKLYATE-FYLLYV 914 (917)
Q Consensus 845 --s~dg~~Lasgs~DG~I~Iwdl~tg~~---l~~l~~h~~~V~sl--afSpdg~~LaSgs~DG~V~IWdl~-~~ll~~ 914 (917)
.+++++|++.+.+|+|++||.+--++ +.++.||...-.-+ -..+....++++|.|...|||.++ +.++.+
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 56899999999999999999986666 88888886543333 345677899999999999999998 445544
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00016 Score=83.66 Aligned_cols=278 Identities=13% Similarity=0.116 Sum_probs=164.3
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeee
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i 657 (917)
|...|.--+++..+++++.|+.-|.+.+|+-..+.....-. +..+.+..+.++++..++|.|+..|.|.++-+..+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445555677888999999999999999987765543322 34455667778999999999999999999988764221
Q ss_pred -----EEe-ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 658 -----TEL-AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 658 -----~~l-~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
... ..|...|+|++|++++..+++|...|.|..-.++... ............++.|..++... +.+|++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~---~~~~~~q~il~~ds~IVQlD~~q-~~LLVSt 187 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ---AFLSKSQEILSEDSEIVQLDYLQ-SYLLVST 187 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh---hhccccceeeccCcceEEeeccc-ceehHhh
Confidence 111 2378899999999999999999999999998887621 11112223345567777777652 3333333
Q ss_pred ECCCeEEEEECCCCeeeEEec-CCCCCC-eEEEEEecC----CCEEEEEeCCCeEEEEECC-CCeEEEEeecC-------
Q psy3053 732 TEAGELIIWSLENHLMTQQLS-DDINAS-VNGVLFSED----GCRVLSCGNNCMLNVYDLT-TGMQVCNKVFE------- 797 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~-~~h~~~-V~~v~fspd----g~~L~s~s~Dg~I~iwDl~-tg~~i~~~~~~------- 797 (917)
.. ...+++++.+.. +++- ....+. -...+|-|. .+-.+.|+.-| .++|... .|..+.+..+.
T Consensus 188 l~--r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p 263 (726)
T KOG3621|consen 188 LT--RCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPP 263 (726)
T ss_pred hh--hhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCC
Confidence 32 234555554432 2221 111221 233445443 23344444433 5777653 24444332211
Q ss_pred -------C---c--------------eEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEE
Q psy3053 798 -------E---K--------------LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLV 853 (917)
Q Consensus 798 -------~---~--------------i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Las 853 (917)
. + ..+...+ .+.+++-+.-| |+++|..+.+.+.-. .....|..++..|+-|++
T Consensus 264 ~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G-iyv~d~~~~~v~l~s-e~~~DI~dVs~~~neiFv 340 (726)
T KOG3621|consen 264 APEIPIRSLESPNQRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG-IYVFDSNNSQVYLWS-EGGHDILDVSHCGNEIFV 340 (726)
T ss_pred CCcccCCCcCCccccCCCCCccccccceeEEee-cceEEEeecce-EEEEEeccceEEEee-cCCCceeEEeecCceEEE
Confidence 0 0 0111111 22344444444 788887766554332 234566677777777777
Q ss_pred EeCCCeEEEEECcC
Q psy3053 854 GCWDSCVVIYDVEC 867 (917)
Q Consensus 854 gs~DG~I~Iwdl~t 867 (917)
-..||.+++..+.+
T Consensus 341 L~~d~~l~~~sv~s 354 (726)
T KOG3621|consen 341 LNLDRGLKVESVAS 354 (726)
T ss_pred EecCCceeEEEeeh
Confidence 77777777666543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3e-05 Score=80.99 Aligned_cols=241 Identities=15% Similarity=0.239 Sum_probs=158.2
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-----eeEEeccCC------------CceeEEEecCCC--CEEEEE
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-----IVTELAGHE------------DAISCVAWDEKR--KRLISG 682 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-----~i~~l~~H~------------~~Vt~l~~spd~--~~L~Sg 682 (917)
...|+++.|...|.++++|...|.|.++.-+... ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3457889999999999999999999999765432 223355554 357888887643 356666
Q ss_pred ECCCeEEEEeCCCCC------------------CCccCC------------------cceeeeccCCCceEEEEEeCCCC
Q psy3053 683 SWDCTVRVWNTGASW------------------SHMKPS------------------KSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 683 s~DgtI~vWdl~~~~------------------~~~~~~------------------~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
+.|.+|++|.+.... +..... .+......|...+.+++++.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999875431 000000 01111234666788899998888
Q ss_pred EEEEEECCCeEEEEECCCCeeeE---EecCCCC-----CCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEE-----
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQ---QLSDDIN-----ASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVC----- 792 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~---~l~~~h~-----~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~----- 792 (917)
.++++ .|=.|.+|++.-..... .+. +|. .-|++..|+|. ...+...+..|.|++-|++......
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 88775 46689999886433222 222 222 35788899994 5567777889999999998432211
Q ss_pred -Eee-----------cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC-EEEEEEecCC------------CceEE---E
Q psy3053 793 -NKV-----------FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV-QLLKQVRAHK------------DAVLS---L 844 (917)
Q Consensus 793 -~~~-----------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~------------~~V~s---i 844 (917)
... .-..|..+.++++|+++.+-.--+|.+||.+.. .++.++.-|. ..|.. +
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 000 123577889999999999888899999999764 4666665442 22221 1
Q ss_pred --eecCCEEEEEeCCCeEEEEE
Q psy3053 845 --HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 845 --s~dg~~Lasgs~DG~I~Iwd 864 (917)
+-|.+.+++|+..+..-++-
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EecCCcccccccccccceeeec
Confidence 33566777777766666664
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=77.98 Aligned_cols=185 Identities=17% Similarity=0.249 Sum_probs=127.9
Q ss_pred EEEeCCCcEEEEEec-----CCceEEEecc-CCceeeeeeccccceEEEEEeCCCCEEEEEe------------------
Q psy3053 586 VAICGEGISVASVGR-----DAMLKIHSLK-TGRQERSAVLSSMTLSSLCILPDNCTMLVGC------------------ 641 (917)
Q Consensus 586 v~fSpdg~~Lasgs~-----Dg~I~IWd~~-t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs------------------ 641 (917)
-+||+||++|++.-. .|.|-|||.. +-+.+..+..+.-.-..+.+.||++.|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 479999999998754 5889999998 5566777777776667888999998777752
Q ss_pred cccEEEEEEeccCeeeEE--e--ccCCCceeEEEecCCCCEEEEEECCCe-------EEEEeCCCCCCCccCCcceeeec
Q psy3053 642 WDSCVVIYDVECGRIVTE--L--AGHEDAISCVAWDEKRKRLISGSWDCT-------VRVWNTGASWSHMKPSKSLVSQL 710 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~--l--~~H~~~Vt~l~~spd~~~L~Sgs~Dgt-------I~vWdl~~~~~~~~~~~~~~~~~ 710 (917)
.+.++...|..+|+.+.. + .-|.-.|..+++.++|..++..-..|. |-+++......... .......
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~--~p~~~~~ 213 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP--APEEQWR 213 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceecc--CChHHHH
Confidence 234666778888988776 4 338889999999999877766554442 33343322100000 0001123
Q ss_pred cCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
.....+-+|+++.++..+++++ ..|.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 4457789999999998775554 56789999999999887764 3456677777776 5555443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-06 Score=61.63 Aligned_cols=39 Identities=41% Similarity=0.791 Sum_probs=36.8
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
|+++.++.+|.+.|++++|+|++..|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0029 Score=72.92 Aligned_cols=251 Identities=16% Similarity=0.154 Sum_probs=140.0
Q ss_pred ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe-------ccCCCceeEEEecCC
Q psy3053 603 MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL-------AGHEDAISCVAWDEK 675 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l-------~~H~~~Vt~l~~spd 675 (917)
.|.||+. .|+.+.++....+.+.++.|+.+. .|++-..||.++++|+. |+....+ .-....+.+..+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 4888985 466777777666889999998754 56667789999999986 3331111 111122222233334
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCccC---CcceeeeccCCCceEE-EEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe
Q psy3053 676 RKRLISGSWDCTVRVWNTGASWSHMKP---SKSLVSQLDLDNRIKC-LAISKDNNQLAVGTEAGELIIWSLENHLMTQQL 751 (917)
Q Consensus 676 ~~~L~Sgs~DgtI~vWdl~~~~~~~~~---~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l 751 (917)
|-.+++ .++.+.+-+-......... ................ ..++.+....+....++.+.+.+....+. +
T Consensus 139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 433333 3444443322111000000 0000000000011111 23445555555555666666554333211 2
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CceEEEEEeCCCEEEEEeCCCeEEEEECCCCE
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE--EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~ 829 (917)
...+++..+++||+|+++|.-..+|.+.+.+..-.+........ .....+.|.+++.++..- ...+.+...
T Consensus 214 --~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~---- 286 (410)
T PF04841_consen 214 --DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGP---- 286 (410)
T ss_pred --cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECC----
Confidence 23568999999999999999999999999887666666666555 567788888875555444 334444432
Q ss_pred EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 830 LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 830 ~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.... .....++..++..-.|| ++|..-..-+.+..+...
T Consensus 287 -------~~~~-~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 287 -------DGDS-ISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred -------CCCc-eEEeccCceEEeccCCc-eEEEeCCceEEEEECCHH
Confidence 1122 22233445556666677 888877777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00029 Score=82.97 Aligned_cols=198 Identities=17% Similarity=0.137 Sum_probs=132.0
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccc-eEEEEEeCCCCEEEEEeccc-----EEEEEEeccC------
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMT-LSSLCILPDNCTMLVGCWDS-----CVVIYDVECG------ 654 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~-V~sl~~spd~~~Lasgs~Dg-----~I~Iwdl~tg------ 654 (917)
++++.+..++.|+.+|.|.+.+- .-+.++.+..+... |..+....+..+|++.+.|+ .++||+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788889999999998877663 22333666666655 44444444446777776654 5999998642
Q ss_pred eee--EEecc-----CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 655 RIV--TELAG-----HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 655 ~~i--~~l~~-----H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
.++ ..+.+ ...++++++.+.+-+.+|.|-.+|.|..+.-+-.. .+ ............+|+.+++..++..
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R--Dr-gsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR--DR-GSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh--cc-ccceeeeccCCCCceeeEEecCCce
Confidence 222 12222 35678999999998999999999999998632211 01 1122334456789999999999987
Q ss_pred EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 728 LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
++.+.....|.+|.+....+.......++.++.|..+++....+++++. ..+.+||.....
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 3333344579999988554344433478889999999986665665554 468999876443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.002 Score=70.42 Aligned_cols=247 Identities=14% Similarity=0.097 Sum_probs=149.9
Q ss_pred EEEEeCCCcEEEEEe----------cCCceEEEeccCCceeeeeecccc-------ceEEEEEeCCCCEEEEEe--cccE
Q psy3053 585 AVAICGEGISVASVG----------RDAMLKIHSLKTGRQERSAVLSSM-------TLSSLCILPDNCTMLVGC--WDSC 645 (917)
Q Consensus 585 sv~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~~~~~~~-------~V~sl~~spd~~~Lasgs--~Dg~ 645 (917)
.+..||+|+.+++++ ..-.|.+||..+-.....+..... .....+++.|++++.+.. -..+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888754 344689999998776665544332 123467889999887764 3568
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce-EEEEEeCC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI-KCLAISKD 724 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V-~~l~~spd 724 (917)
|.|.|+..++.+..+.- .+ +..+--+. ...+.+-+.||++.-..+........ .....+.....++ ..-++...
T Consensus 120 VtVVDl~~~kvv~ei~~-PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT-PG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQ--KSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEEEEEEEG-TS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEE--EEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCceeeeecC-CC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEeE--eeccccCCCCcccccccceECC
Confidence 99999999998877752 22 22221122 25688889999999998875532221 1111122222222 24445556
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeE--EecCC---------CCCCeEEEEEecCCCEEEEEeC---C-------CeEEEE
Q psy3053 725 NNQLAVGTEAGELIIWSLENHLMTQ--QLSDD---------INASVNGVLFSEDGCRVLSCGN---N-------CMLNVY 783 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~~~~~~--~l~~~---------h~~~V~~v~fspdg~~L~s~s~---D-------g~I~iw 783 (917)
+..++.-+.+|.|+--|+....... ..... ..+...-+++++..+.|.+.-. + ..|-++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 6667667889999998887654321 11100 1133445777776555554321 1 147788
Q ss_pred ECCCCeEEEEeecCCceEEEEEeCCC--EEEEE-eCCCeEEEEECCCCEEEEEEec
Q psy3053 784 DLTTGMQVCNKVFEEKLLCLSWAGEE--KVILG-GALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 784 Dl~tg~~i~~~~~~~~i~~l~~s~~~--~lv~g-s~dG~I~vwdl~~~~~i~~l~~ 836 (917)
|+.+++.+..+.....+.++..+.+. .+++. ..++.+.+||..+|+.++++..
T Consensus 275 D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 88999998888887778788887543 34443 3568899999999988887764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00048 Score=79.79 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=89.3
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
.|.--+++..+++++.|+.-|.+++|+-..++.... ..+-.+.+..+..+++..++|.|+..|.|.++-+..... +
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p---~ 111 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP---R 111 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC---C
Confidence 344445677889999999999999999887765432 233445666777888888899999999999998866421 1
Q ss_pred Ccceee--eccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 703 SKSLVS--QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 703 ~~~~~~--~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
...... ...|...|+|++|++++..+.+|...|.|....+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111111 123688999999999999999999999999988877
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.3e-06 Score=99.39 Aligned_cols=226 Identities=12% Similarity=0.146 Sum_probs=155.9
Q ss_pred cccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc--EE
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS--CV 646 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg--~I 646 (917)
.+++..+++.|+..-+|++|+.+.+.|+.|+..|.|+++++.+|....+...|..+|+.+.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 3456677889999999999999999999999999999999999999999999999999999999998777655433 47
Q ss_pred EEEEecc-CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 647 VIYDVEC-GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 647 ~Iwdl~t-g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
.+|+..+ +...+++. .-.++.|+.....-+.|+......+||+.++...... +....+....-.+..|+|+.
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty---lt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY---LTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh---cCcchhhhhhccccccCCCc
Confidence 7898764 33444443 4567888865544455555567889999887311110 00111222233788999998
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~ 805 (917)
++++ .|| .+||++..+.++.+. ... .--.-.|+|.|..++.-+ .|||+++-+.+.....-. -..+.|
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD-~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld-qc~VtF 1309 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFD-QFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD-QCAVTF 1309 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhh-hhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc-ceEEEe
Confidence 8775 355 469999887777665 222 112335899999888765 489999876654433211 123455
Q ss_pred eCCCEEEEE
Q psy3053 806 AGEEKVILG 814 (917)
Q Consensus 806 s~~~~lv~g 814 (917)
+..|.++.+
T Consensus 1310 NstG~VmYa 1318 (1516)
T KOG1832|consen 1310 NSTGDVMYA 1318 (1516)
T ss_pred ccCccchhh
Confidence 544444433
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0079 Score=71.56 Aligned_cols=284 Identities=11% Similarity=0.080 Sum_probs=167.0
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccc-cceE---EEEE-----eCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLS---SLCI-----LPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~---sl~~-----spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
+..|+.++.++.|.-.|..+|+.+.+..... ..+. ++.. .-.+..++.++.|+.+...|..+|+.+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567777888899999999998887654321 1111 1100 11235677888999999999999999876542
Q ss_pred --CCC--ceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCccee-------------eec--------
Q psy3053 663 --HED--AISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSKSLV-------------SQL-------- 710 (917)
Q Consensus 663 --H~~--~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~~~-------------~~~-------- 710 (917)
+.. .+++ -... ++ .++.++. +|.|..+|.+++........... ...
T Consensus 149 ~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 149 GDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 111 1211 1111 33 4555432 68898888887752211100000 000
Q ss_pred --c-CCCceE-EEEEeCCCCEEEEEECC-----C-----------eEEEEECCCCeeeEEecCCCCC--------CeEEE
Q psy3053 711 --D-LDNRIK-CLAISKDNNQLAVGTEA-----G-----------ELIIWSLENHLMTQQLSDDINA--------SVNGV 762 (917)
Q Consensus 711 --~-h~~~V~-~l~~spdg~~Lasgs~d-----G-----------~I~iwDl~~~~~~~~l~~~h~~--------~V~~v 762 (917)
. ....+. .+++.++..++..+..+ + .|.-.|+++|+....++..+.+ ...-+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0 111222 35777777777766522 2 6778899999988877632211 11122
Q ss_pred EEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeec----------C--C--ce-------------------------
Q psy3053 763 LFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVF----------E--E--KL------------------------- 800 (917)
Q Consensus 763 ~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~----------~--~--~i------------------------- 800 (917)
....+|+ .++.+..+|.+.+.|..+|+.+..... . . ++
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg 386 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGG 386 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCC
Confidence 2334676 778999999999999999988622100 0 0 00
Q ss_pred ---EEEEEeCCC-EEEEEe---------------------------------CCCeEEEEECCCCEEEEEEecCCCceEE
Q psy3053 801 ---LCLSWAGEE-KVILGG---------------------------------ALGMVYLVDLIQVQLLKQVRAHKDAVLS 843 (917)
Q Consensus 801 ---~~l~~s~~~-~lv~gs---------------------------------~dG~I~vwdl~~~~~i~~l~~h~~~V~s 843 (917)
..++++|+. .+++.. ..|.+.-+|+.+++..-+.........+
T Consensus 387 ~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~ 466 (527)
T TIGR03075 387 KNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGG 466 (527)
T ss_pred CCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCc
Confidence 013333322 121111 1356888899999887766532221112
Q ss_pred -EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 844 -LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 844 -is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
+.-.+..++.++.||.++.+|.++|+.+...+-.
T Consensus 467 ~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 467 VLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 2346677888888999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00084 Score=82.02 Aligned_cols=239 Identities=11% Similarity=0.158 Sum_probs=144.4
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
..+.|.++.|-.+++.++.+..+|.|.+-|.++.... ....-..+|.+++|+||+..++..+.++++.+-.-. -.++.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence 3468999999999999999999999999987765432 233346789999999999999999988888665432 11111
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC---cceeeeccCCCceEEEEEeCCCCEEEEE----
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS---KSLVSQLDLDNRIKCLAISKDNNQLAVG---- 731 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---~~~~~~~~h~~~V~~l~~spdg~~Lasg---- 731 (917)
.-.-|.+ -.+. +..+++++...=.-+.-..+....... ..........+.=++++|--||.++|+.
T Consensus 145 E~~L~~d------~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 145 EKPLDAD------DERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccccc------cccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 1110110 0111 223444433322222211111000000 0000111123344679999999999883
Q ss_pred -ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEECCCCeEEEE----eecCCc-eEE
Q psy3053 732 -TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG---NNCMLNVYDLTTGMQVCN----KVFEEK-LLC 802 (917)
Q Consensus 732 -s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s---~Dg~I~iwDl~tg~~i~~----~~~~~~-i~~ 802 (917)
.....|++||.+ |..-..-. ...+.-.+++|-|.|..+++.. .|+.|.++.- +|-.... ...+.. +..
T Consensus 218 ~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred cCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhe
Confidence 333789999987 43332222 4445567899999999998764 4567888874 3433322 223333 889
Q ss_pred EEEeCCCEEEEE---eCCC-eEEEEECCCCE
Q psy3053 803 LSWAGEEKVILG---GALG-MVYLVDLIQVQ 829 (917)
Q Consensus 803 l~~s~~~~lv~g---s~dG-~I~vwdl~~~~ 829 (917)
++|+.++.++++ ...+ .|++|-..+-.
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeE
Confidence 999987766655 4444 49999988754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0024 Score=74.93 Aligned_cols=198 Identities=12% Similarity=-0.010 Sum_probs=120.1
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC----CeEEEEECCCCeeeEEecCCCCCCeE
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA----GELIIWSLENHLMTQQLSDDINASVN 760 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d----G~I~iwDl~~~~~~~~l~~~h~~~V~ 760 (917)
.+.+.+.|..+. .......-+.....++++++|+++++.+.+ +++...+.........+... .
T Consensus 214 ~~~vSvID~etm--------eV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~---~-- 280 (635)
T PRK02888 214 RSLFTAVDAETM--------EVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA---R-- 280 (635)
T ss_pred eEEEEEEECccc--------eEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH---H--
Confidence 355666665543 222222234455678889999998887632 22333332222111111100 0
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCceEEEEEeCCCE--EEEEeCCCeEEEEECCCCEE---
Q psy3053 761 GVLFSEDGCRVLSCGNNCMLNVYDLTT-----GMQVCNKVFEEKLLCLSWAGEEK--VILGGALGMVYLVDLIQVQL--- 830 (917)
Q Consensus 761 ~v~fspdg~~L~s~s~Dg~I~iwDl~t-----g~~i~~~~~~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~~~~~--- 830 (917)
.-++.++|++... .++.|.+.|.++ ...+..+........+.++|++. ++++..++++.++|+.+.+.
T Consensus 281 iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 281 IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 0123457777665 367899999998 46677788888899999999886 34555689999999988552
Q ss_pred ---------EEEEecCCCc-eEEEeecCCEEEEEeCCCeEEEEECcC----------CeEEEEecCCCCCE-----EEEE
Q psy3053 831 ---------LKQVRAHKDA-VLSLHFDNCTMLVGCWDSCVVIYDVEC----------GRIVTELAGHEDAI-----SCVA 885 (917)
Q Consensus 831 ---------i~~l~~h~~~-V~sis~dg~~Lasgs~DG~I~Iwdl~t----------g~~l~~l~~h~~~V-----~sla 885 (917)
+.+..-..++ -+.+..+|....+-.-|..|..|++.+ ...+..+.-|-.+- .+=.
T Consensus 359 ~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t 438 (635)
T PRK02888 359 GKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGET 438 (635)
T ss_pred ccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCc
Confidence 4444433344 344466777777778899999999876 33455554443322 1122
Q ss_pred EcCCCCEEEEEe
Q psy3053 886 WDEKRKRLISGN 897 (917)
Q Consensus 886 fSpdg~~LaSgs 897 (917)
-.|||++|++..
T Consensus 439 ~~~dgk~l~~~n 450 (635)
T PRK02888 439 KEADGKWLVSLN 450 (635)
T ss_pred CCCCCCEEEEcc
Confidence 367888888764
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.013 Score=65.42 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=131.0
Q ss_pred EEEeCCCcEEE-EEecCCc--eEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 586 VAICGEGISVA-SVGRDAM--LKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 586 v~fSpdg~~La-sgs~Dg~--I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
=+|.+||+.|+ ++..||. +.+-|+.+++..+-..+.........++|+++.++-......++-.|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 35788996555 4444665 55567777776655444333333566788888887666667889999999887666666
Q ss_pred CCCceeEEEec--CCCCEEEEEEC----------------------CCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 663 HEDAISCVAWD--EKRKRLISGSW----------------------DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 663 H~~~Vt~l~~s--pd~~~L~Sgs~----------------------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
..+.+-...|. .++..++-.-. .+.|.--|+.++ ...........+..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--------~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--------ERKVVFEDTDWLGH 192 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----------EEEEEEESS-EEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC--------ceeEEEecCccccC
Confidence 66666556663 34555443211 112333344433 23333444566778
Q ss_pred EEEeCCCCEEEEEECCCe-----EEEEECCC-CeeeEEec-CCCCCCeEEEEEecCCCEEEEEe-----CCCeEEEEECC
Q psy3053 719 LAISKDNNQLAVGTEAGE-----LIIWSLEN-HLMTQQLS-DDINASVNGVLFSEDGCRVLSCG-----NNCMLNVYDLT 786 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~-----I~iwDl~~-~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s-----~Dg~I~iwDl~ 786 (917)
+.++|....+++=|..|. -++|-+++ +...+.+. ......+..=-|.|||..+.--+ .+..|.-+|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 889996655555444331 24454432 22233332 12233455556899998877533 24467778888
Q ss_pred CCeEEEEeecCCceEEEEEeCCCEEEEEeCCC-----------------eEEEEECCCCEEEEEEe---------cC---
Q psy3053 787 TGMQVCNKVFEEKLLCLSWAGEEKVILGGALG-----------------MVYLVDLIQVQLLKQVR---------AH--- 837 (917)
Q Consensus 787 tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG-----------------~I~vwdl~~~~~i~~l~---------~h--- 837 (917)
+++.......+ ...-+-.++++.+++|...+ .|+++++..++...... ++
T Consensus 273 t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 273 TGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp T--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 88665433333 33345556788888765432 46677887766432111 11
Q ss_pred CCceEEEeecCCEEEE-EeCCCeEEEEE
Q psy3053 838 KDAVLSLHFDNCTMLV-GCWDSCVVIYD 864 (917)
Q Consensus 838 ~~~V~sis~dg~~Las-gs~DG~I~Iwd 864 (917)
..+-.+.+|||++|+- +...|...||=
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 1233566889988655 44567666653
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0098 Score=64.60 Aligned_cols=234 Identities=14% Similarity=0.177 Sum_probs=138.0
Q ss_pred eCCCcEEEEEecCCceEEEeccC-CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE--------
Q psy3053 589 CGEGISVASVGRDAMLKIHSLKT-GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE-------- 659 (917)
Q Consensus 589 Spdg~~Lasgs~Dg~I~IWd~~t-~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~-------- 659 (917)
...++.|+.|..+| +.+++... ....+.. +...|..+...++-+.+++-+ |+.++++++..-.....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34577899998888 88888832 2222222 223389999999877766654 59999999876433321
Q ss_pred ------eccCCCceeEEE--ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 660 ------LAGHEDAISCVA--WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 660 ------l~~H~~~Vt~l~--~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
.......+...+ -...+...+.+.....|.+|.......... ...........+.+++|. ++.++.|
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~---~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS---KLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc---ceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 111223444444 112333333344455899988765311110 233345566889999998 6778888
Q ss_pred ECCCeEEEEECCCCeeeEEecCCC-----------CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE--EEeecCC
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDI-----------NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV--CNKVFEE 798 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h-----------~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i--~~~~~~~ 798 (917)
..++ ..+.|+.++.......... ..++..+.. +++.+|++. |..-...|. .|+.. ..+....
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS 229 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC
Confidence 7654 7888998776544432111 112333333 344555543 222333343 44433 3455566
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
.+.++++... ++++.+. +.|.+|++.+++.++.+....
T Consensus 230 ~p~~~~~~~p-yli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 230 APQSVAYSSP-YLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred chhEEEEECC-EEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 7777777655 5555554 559999999999988887543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0044 Score=76.01 Aligned_cols=238 Identities=14% Similarity=0.139 Sum_probs=136.2
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
..|.++.|..+..-++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+.++++.+-.-.-.. ..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~--i~- 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP--IA- 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc--hh-
Confidence 57889999999999999999999999988776432 222345789999999999999999988888765421110 00
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee-eEEecCCCCCCeEEEEEecCCCEEEEEe----CC
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM-TQQLSDDINASVNGVLFSEDGCRVLSCG----NN 777 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s----~D 777 (917)
...+.......+....+-|-...+.+ -| ..|.....+...... .... ...+.=++|+|--||.++++.. .+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~--~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQI--EQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred ccccccccccccccceecccccceee-ec-chhhhcccccccccccccch--hhccCCceEEEccCCcEEEEEEEeccCC
Confidence 00110111111222223332211111 11 111111111110000 0000 1223345689999999998743 23
Q ss_pred -CeEEEEECCCCeEEEE-eecCCceEEEEEeCCCEEEEE----eCCCeEEEEECCCC---EEEEEEecCCCceEEEee--
Q psy3053 778 -CMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVILG----GALGMVYLVDLIQV---QLLKQVRAHKDAVLSLHF-- 846 (917)
Q Consensus 778 -g~I~iwDl~tg~~i~~-~~~~~~i~~l~~s~~~~lv~g----s~dG~I~vwdl~~~---~~i~~l~~h~~~V~sis~-- 846 (917)
+.+++||-+ |..-.. ....+.-.+++|-|.|.++++ ++++.|.++..... ...-.++.....+..+.|
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 789999976 433322 223345678999998776654 34567888876432 222222333444777766
Q ss_pred cCCEEEE---EeCCCeEEEEECcCCe
Q psy3053 847 DNCTMLV---GCWDSCVVIYDVECGR 869 (917)
Q Consensus 847 dg~~Las---gs~DG~I~Iwdl~tg~ 869 (917)
++..|++ ......|++|-+.+-.
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeE
Confidence 5667766 3444459999886554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.033 Score=61.09 Aligned_cols=261 Identities=16% Similarity=0.163 Sum_probs=152.8
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccCeeeEEec--c-CCC---
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECGRIVTELA--G-HED--- 665 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg~~i~~l~--~-H~~--- 665 (917)
+.+.+.|.++++.+..+...- ...+..+||++.+.+++ ....|.+||..+-.....+. . |..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 368888988888776665432 33466899999887653 34569999999987766443 2 111
Q ss_pred -ceeEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEE
Q psy3053 666 -AISCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWS 741 (917)
Q Consensus 666 -~Vt~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwD 741 (917)
.....+++.|+++++... -..+|.|-|+... .........+. .-.-|. .+-+.+-|.||.+.-..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--------kvv~ei~~PGC---~~iyP~~~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK--------KVVGEIDTPGC---WLIYPSGNRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT--------EEEEEEEGTSE---EEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC--------ceeeeecCCCE---EEEEecCCCceEEEecCCceEEEE
Confidence 123456777888776643 3456888887665 33333333332 222232 24588889999999888
Q ss_pred CC-CCeeeEEec---CCCCCC-eEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE--eec-----------CCceEEE
Q psy3053 742 LE-NHLMTQQLS---DDINAS-VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVF-----------EEKLLCL 803 (917)
Q Consensus 742 l~-~~~~~~~l~---~~h~~~-V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~--~~~-----------~~~i~~l 803 (917)
+. .|+...... .....+ ...-+++..+..++-.+.+|.|+-.|+........ ... ++.-.-+
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 87 454443221 112222 23445556666777788899999988876543322 111 1112235
Q ss_pred EEeC-CCEEEEEeC---C-------CeEEEEECCCCEEEEEEecCCCceEEE--eecCC-EEEEE-eCCCeEEEEECcCC
Q psy3053 804 SWAG-EEKVILGGA---L-------GMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNC-TMLVG-CWDSCVVIYDVECG 868 (917)
Q Consensus 804 ~~s~-~~~lv~gs~---d-------G~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~-~Lasg-s~DG~I~Iwdl~tg 868 (917)
++++ .+.+.+.-. + ..|.++|+.+++.+.++... ..+.+| +-+.+ .|++. ..++.+.+||..+|
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 5553 345444211 1 25888899999999998742 234344 44444 55554 45799999999999
Q ss_pred eEEEEecC
Q psy3053 869 RIVTELAG 876 (917)
Q Consensus 869 ~~l~~l~~ 876 (917)
+.++++.+
T Consensus 323 k~~~~~~~ 330 (342)
T PF06433_consen 323 KLVRSIEQ 330 (342)
T ss_dssp -EEEEE--
T ss_pred cEEeehhc
Confidence 99998864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.053 Score=65.63 Aligned_cols=322 Identities=16% Similarity=0.196 Sum_probs=182.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-eeeccccceEEEEEeCC--C----CEEEEEecccEEEEEEec-c
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-SAVLSSMTLSSLCILPD--N----CTMLVGCWDSCVVIYDVE-C 653 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-~~~~~~~~V~sl~~spd--~----~~Lasgs~Dg~I~Iwdl~-t 653 (917)
.++..+.+.+...++.++.++.+...++..+.... .-..-...|.|+.++|- + +.+++|.|+..+.+.-.. +
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 44555555566677777777777777766554211 11223456889988874 2 378999998876655433 3
Q ss_pred CeeeEEe--cc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC--------cceeeeccC--CCceEE-
Q psy3053 654 GRIVTEL--AG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS--------KSLVSQLDL--DNRIKC- 718 (917)
Q Consensus 654 g~~i~~l--~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~--------~~~~~~~~h--~~~V~~- 718 (917)
...+... .+ -...|--.++-.|..+|.++..||.+.-+.+.......... +........ ...+.|
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence 3322211 11 22344455555567899999999998877554432111100 000000000 001111
Q ss_pred -----EEEeCCC------------------------CEEEEEECCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecC
Q psy3053 719 -----LAISKDN------------------------NQLAVGTEAGELIIWSLENHLM--TQQLSDDINASVNGVLFSED 767 (917)
Q Consensus 719 -----l~~spdg------------------------~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspd 767 (917)
+-++.++ ..++++ ..+.+.+..++.-+. ++++ +.......+++.+.
T Consensus 649 sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~ 725 (1096)
T KOG1897|consen 649 SDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--PLGESPRRICYQES 725 (1096)
T ss_pred CCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeee--cCCCChhheEeccc
Confidence 1111111 112222 223344443332211 2222 23455666777764
Q ss_pred CCEEEEEeCC--------------CeEEEEECCCCeEEEEeecCC--c---eEEEEEe--CCCEEEEEeC----------
Q psy3053 768 GCRVLSCGNN--------------CMLNVYDLTTGMQVCNKVFEE--K---LLCLSWA--GEEKVILGGA---------- 816 (917)
Q Consensus 768 g~~L~s~s~D--------------g~I~iwDl~tg~~i~~~~~~~--~---i~~l~~s--~~~~lv~gs~---------- 816 (917)
...+.+.+.. ..++++|-.+-+.++...+.. . +.++.+. ++.++++|+.
T Consensus 726 sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~ 805 (1096)
T KOG1897|consen 726 SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPV 805 (1096)
T ss_pred ceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcc
Confidence 4444433311 247778877777666554432 2 3333454 3446677653
Q ss_pred CCeEEEEECCCCEEEEEEec--CCCceEEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEE
Q psy3053 817 LGMVYLVDLIQVQLLKQVRA--HKDAVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~~--h~~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~L 893 (917)
.|.|.++....+..+..... -.+.+.++ .++|+++|+- ...|++|++.+++.++.-..|..++..+...-.|..+
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI 883 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEI 883 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEE
Confidence 48888888877444443322 35667777 6788887755 4589999999998888777888999999999999999
Q ss_pred EEEeCCCcEEEEecC
Q psy3053 894 ISGNLVGAPKLYATE 908 (917)
Q Consensus 894 aSgs~DG~V~IWdl~ 908 (917)
+.|+.-+++.+-...
T Consensus 884 ~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 884 AVGDLMRSITLLQYK 898 (1096)
T ss_pred EEeeccceEEEEEEe
Confidence 999988887765554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00062 Score=77.93 Aligned_cols=124 Identities=17% Similarity=0.263 Sum_probs=85.1
Q ss_pred ccceeeeccCCcceEEEEEeC-CCcEEEEEe----cCCce----EEEeccCCceeee--ee-ccccceEEEEEeCCCCEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICG-EGISVASVG----RDAML----KIHSLKTGRQERS--AV-LSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs----~Dg~I----~IWd~~t~~~~~~--~~-~~~~~V~sl~~spd~~~L 637 (917)
++.+...+...++ .++.||. +...+.|.. .+|.+ ++|+...++..+. .. .....+.+++++|+...+
T Consensus 196 lEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kL 274 (545)
T PF11768_consen 196 LEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKL 274 (545)
T ss_pred EEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceE
Confidence 3444444433333 4666776 344555443 34433 4666654433221 11 235678999999999999
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCC
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~ 696 (917)
+.|+.||+|.+||...+.... ..+.-..+.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 275 vlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 275 VLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999999999999988764332 234556889999999999999999999999998655
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.023 Score=63.39 Aligned_cols=271 Identities=15% Similarity=0.119 Sum_probs=125.0
Q ss_pred EEEeCCCCEEEEEec-c--cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCc
Q psy3053 628 LCILPDNCTMLVGCW-D--SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 628 l~~spd~~~Lasgs~-D--g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
=+|.+||+.|+.++. | ..+++.|+++++..+--.+-.+......++++++.++-...+..|.-.|+.+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e------- 113 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE------- 113 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---------
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-------
Confidence 357889977666554 4 467778888888776555432333356677888888776667788888988762
Q ss_pred ceeeeccCCCceEEEEE--eCCCCEEEEEE----------------------CCCeEEEEECCCCeeeEEecCCCCCCeE
Q psy3053 705 SLVSQLDLDNRIKCLAI--SKDNNQLAVGT----------------------EAGELIIWSLENHLMTQQLSDDINASVN 760 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~--spdg~~Lasgs----------------------~dG~I~iwDl~~~~~~~~l~~~h~~~V~ 760 (917)
......-.+..+-...| +.++..++-.- -...|...|+.+|+....+. ....+.
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlg 191 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLG 191 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCcccc
Confidence 11112222333333444 33455443221 12346667888887655554 456788
Q ss_pred EEEEecCCC-EEEEEeC---CC-eEEEEECCC-CeEEEEe-ec--CCceEEEEEeCCCEEE---E---EeCCCeEEEEEC
Q psy3053 761 GVLFSEDGC-RVLSCGN---NC-MLNVYDLTT-GMQVCNK-VF--EEKLLCLSWAGEEKVI---L---GGALGMVYLVDL 825 (917)
Q Consensus 761 ~v~fspdg~-~L~s~s~---Dg-~I~iwDl~t-g~~i~~~-~~--~~~i~~l~~s~~~~lv---~---gs~dG~I~vwdl 825 (917)
.+.|+|... .|+-|.+ +. .-+||-+.+ |.....+ .. ...+.-=-|.++|..+ . ++.+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 999999544 4444432 11 125554432 2222221 11 1123333456655422 1 122345777788
Q ss_pred CCCEEEEEEecCCCceEEE-eecCCEEEEEeCCC----------------eEEEEECcCCeEEEEe---------cCCCC
Q psy3053 826 IQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWDS----------------CVVIYDVECGRIVTEL---------AGHED 879 (917)
Q Consensus 826 ~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~DG----------------~I~Iwdl~tg~~l~~l---------~~h~~ 879 (917)
.+++........ ..+.-. ++||++++-=+.|. -|++++++.++..... .++..
T Consensus 272 ~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 272 DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp TT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 877654322221 111111 56888776544332 4667788777653221 11111
Q ss_pred -CEEEEEEcCCCCEEE-EEeCCCcEEEEecC
Q psy3053 880 -AISCVAWDEKRKRLI-SGNLVGAPKLYATE 908 (917)
Q Consensus 880 -~V~slafSpdg~~La-Sgs~DG~V~IWdl~ 908 (917)
.=....|||||++++ ++...|...||-++
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 125678999999876 55677887777654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0071 Score=69.92 Aligned_cols=217 Identities=15% Similarity=0.199 Sum_probs=115.0
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
......+.++|+|+.+++ +.||.-.|+.....+... .+.-...+|.+. +.+|+-...++|.++.--...
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~---- 100 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE---- 100 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-----
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccc----
Confidence 334678899999999988 668888888744333322 234567788884 557777778899996422210
Q ss_pred CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLN 781 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~ 781 (917)
. ......+..+..+-. |.+|+..+.+ .|.+||..+++.++.+. . .+|..+.|+++|.+++..+.+ .+.
T Consensus 101 ---~-~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v-~~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 101 ---V-VKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--V-SAVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp ---T-T-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred ---c-ceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe--c-CCCcEEEEECCCCEEEEEeCC-eEE
Confidence 0 001111222333332 7777776655 89999999999999987 2 248999999999999998866 577
Q ss_pred EEECCCC------------eEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE--EEEEEecCCCceEEEeec
Q psy3053 782 VYDLTTG------------MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ--LLKQVRAHKDAVLSLHFD 847 (917)
Q Consensus 782 iwDl~tg------------~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~h~~~V~sis~d 847 (917)
+++.... ...........|.+..|.++ .++-.+.. .+.. +..|. .+..+. ..-.+....+.
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~~~i~~ld-~~~yllgy~~~ 243 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNGETGIIAHLD-KPLYLLGYLPK 243 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETTEEEEEEE-S-S--EEEEEETT
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCcceEEEcC-CceEEEEEEcc
Confidence 7765433 22223333677888899888 55555544 6655 33333 222221 12222333444
Q ss_pred CCEEEEEeCCCeEEEEECc
Q psy3053 848 NCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~ 866 (917)
.+.+.....|+.|..+.+.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTEEEEE-TT--EEEEE--
T ss_pred CCEEEEEECCCCEEEEEEC
Confidence 4667777777777666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0066 Score=64.56 Aligned_cols=204 Identities=11% Similarity=0.114 Sum_probs=118.1
Q ss_pred eeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccC-CCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGH-EDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H-~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
+.+-...++.++|.|+++ ++++....+.|..++. +|+.++.+.-. .+..-+|++..++.++++.-+++.+.+.++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 334445689999999765 5556667888888886 47777776533 35678899988887777766789999998855
Q ss_pred CCCCccCCc--cee--eeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC---CeeeEEec-------CCCCCCeEE
Q psy3053 696 SWSHMKPSK--SLV--SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN---HLMTQQLS-------DDINASVNG 761 (917)
Q Consensus 696 ~~~~~~~~~--~~~--~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~---~~~~~~l~-------~~h~~~V~~ 761 (917)
......... ... ....+...+-.++|++.++.++++-......++.+.. ........ ......+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 422111111 111 1112455689999999988888887777766776653 11111110 123456788
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCC----------ceEEEEEeCCCEEEEEeCCCeEEEE
Q psy3053 762 VLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE----------KLLCLSWAGEEKVILGGALGMVYLV 823 (917)
Q Consensus 762 v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~----------~i~~l~~s~~~~lv~gs~dG~I~vw 823 (917)
++++|. |.+++.+..+..|..+| .+|+.+....... +.-.++++++|.+.+.+.-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 999995 55666677788899999 6777777666543 4678889988888888877766654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.014 Score=63.38 Aligned_cols=232 Identities=14% Similarity=0.162 Sum_probs=134.7
Q ss_pred CCCCEEEEEecccEEEEEEecc-CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcc-----
Q psy3053 632 PDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS----- 705 (917)
Q Consensus 632 pd~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~----- 705 (917)
..++.|+.|+.+| +.+++... .+..... +...|..+...++-+.+++-+ |+.+.++++..-.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999888 89999833 3333332 233499999998877777765 599999998765322211000
Q ss_pred --eeeeccCCCceEEEE--EeCCC-CEEEEEECCCeEEEEECCCC-----eeeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 706 --LVSQLDLDNRIKCLA--ISKDN-NQLAVGTEAGELIIWSLENH-----LMTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 706 --~~~~~~h~~~V~~l~--~spdg-~~Lasgs~dG~I~iwDl~~~-----~~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
..........+...+ -...+ ..++++. ...|.+|..... +..+.+. ....+.+++|. ++.++.|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEEe
Confidence 001122233344444 12233 4445444 448888877653 3445554 55888999998 45677776
Q ss_pred CCCeEEEEECCCCeEEEEeecC-------------CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE-EEecCCCce
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFE-------------EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK-QVRAHKDAV 841 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~-------------~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~-~l~~h~~~V 841 (917)
.+ ...+.|+.++......... .++..+....+ .++.+.. ..-...|. .|+..+ ..-.-....
T Consensus 156 ~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~Ll~~~-~~g~fv~~-~G~~~r~~~i~W~~~p 231 (275)
T PF00780_consen 156 SK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDN-EFLLCYD-NIGVFVNK-NGEPSRKSTIQWSSAP 231 (275)
T ss_pred CC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCc-eEEEEec-ceEEEEcC-CCCcCcccEEEcCCch
Confidence 55 4788899877554333211 12333344434 3333332 22223333 343332 111123455
Q ss_pred EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 842 LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 842 ~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.++.....+|++.+.+ .|.||++.++++++.+...
T Consensus 232 ~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 232 QSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred hEEEEECCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 5666677788877665 4999999999999888754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00028 Score=83.41 Aligned_cols=178 Identities=13% Similarity=0.184 Sum_probs=127.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
++..++-|+....+..+|+++.. ......-..+.|+-+ ..+++.+.+|...|+|.+-|.++.+.++++. .
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~-------e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK-------ETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-A 215 (1118)
T ss_pred CCcceeecchhhheeeeecccce-------eeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeee-c
Confidence 44677788878888888987751 111111112234433 3468899999999999999999999999998 8
Q ss_pred CCCCeEEEEEecCCCEEEEEeC---------CCeEEEEECCCCeEEEEeecCCceEEEEEeC--CCEEEEEeCCCeEEEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCGN---------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG--EEKVILGGALGMVYLV 823 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s~---------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~--~~~lv~gs~dG~I~vw 823 (917)
|.+.|.++.. .|+.|++||. |..|+|||++.-..+..+.......-+.+.| ...+++++..|...+.
T Consensus 216 Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 216 HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence 9998876544 6889999885 5568999999887776666554444455554 3478999999999999
Q ss_pred EC---CCCE-EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEE
Q psy3053 824 DL---IQVQ-LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 824 dl---~~~~-~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwd 864 (917)
|. .+.. -+..+......+.++ +++|+.++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 94 3321 122222233335444 88999999999999999997
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0039 Score=72.08 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=119.6
Q ss_pred CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q psy3053 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl 742 (917)
..-....+.++|+|+.++.+ .||.-.++..... .. ...+.-...+|.+.+ .+|+-...+.|.++.-
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~--------r~----k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW--------RN----KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKN 96 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT--------EE----EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEET
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC--------cc----cccCceeEEEEecCc-cEEEEECCCeEEEEEc
Confidence 44557899999999999885 4888888873221 11 112345568888854 4666677888999743
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
-+......+. ....+..+-. |..|...+.+ .|.+||+.+++.+..+.... +..+.|++++.+++-..+..+.+
T Consensus 97 ~~~~~~k~i~--~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 97 FKNEVVKSIK--LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp TEE-TT-------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEE
T ss_pred CccccceEEc--CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEE
Confidence 3333323333 1223444433 7777777655 89999999999999888765 89999999887777777778888
Q ss_pred EECCCC--------------EEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 823 VDLIQV--------------QLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 823 wdl~~~--------------~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
++.... ..+.++ ...|.+..|++..++-.+.. .++. +-.|.. ..+..-..++.=+...+
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETTEEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEET
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEc
Confidence 765433 222222 45566666666655555444 5555 333332 22222245677778888
Q ss_pred CCCEEEEEeCCCcEEEEecCc
Q psy3053 889 KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 889 dg~~LaSgs~DG~V~IWdl~~ 909 (917)
..+.+.....|+.|..+.++.
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--H
T ss_pred cCCEEEEEECCCCEEEEEECH
Confidence 888999999999999888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.01 Score=66.12 Aligned_cols=191 Identities=14% Similarity=0.144 Sum_probs=113.5
Q ss_pred ceEEEeccCCceeeeeeccc-cceEEEEE---eCC----CCEEEEEec----------ccEEEEEEeccC----eeeEEe
Q psy3053 603 MLKIHSLKTGRQERSAVLSS-MTLSSLCI---LPD----NCTMLVGCW----------DSCVVIYDVECG----RIVTEL 660 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~-~~V~sl~~---spd----~~~Lasgs~----------Dg~I~Iwdl~tg----~~i~~l 660 (917)
.|++.|..+.+.+.++.... ..+.+++. ..+ ..++++|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777877777666555432 23444432 222 467887754 289999999884 122211
Q ss_pred --ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 661 --AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 661 --~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
....++|++++-. ++ .|+.|. .+.|.+|++.... .............+.++... ++++++|+....+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~-----~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK-----TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS-----SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc-----cchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence 2357889999877 33 455444 5899999987762 01112222333355555554 67999999888888
Q ss_pred EEECC--CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------C----eEEEEeecCCceEEE
Q psy3053 739 IWSLE--NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-------G----MQVCNKVFEEKLLCL 803 (917)
Q Consensus 739 iwDl~--~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-------g----~~i~~~~~~~~i~~l 803 (917)
++..+ ..+....-.......++++.+-+++..++++..+|.+.++.... + .....+..+..++++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 77443 33233332334456788999987767999999999999987652 1 123445556666666
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.011 Score=67.55 Aligned_cols=266 Identities=11% Similarity=0.069 Sum_probs=138.8
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC-C-cc
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS-H-MK 701 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~-~-~~ 701 (917)
.|+.+.++++..-+++|...|.|.||.....+.-. ..-...-....+.+- ...++.-.+-|+..... . ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 57889999999999999999999999887544322 000001111111110 00111222334332210 0 01
Q ss_pred CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec-------CCCCCCeEEEEEec-----CC-
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-------DDINASVNGVLFSE-----DG- 768 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-------~~h~~~V~~v~fsp-----dg- 768 (917)
............++|++++.| +=.++|+|..+|.+.|.|++....+..-. ......++++.|+- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 111222223347899999997 55699999999999999999888776522 12345688888873 33
Q ss_pred --CEEEEEeCCCeEEEEECC--C-CeE----EEEe-ecCCceEEEEE-eCC---------------------CEEEEEeC
Q psy3053 769 --CRVLSCGNNCMLNVYDLT--T-GMQ----VCNK-VFEEKLLCLSW-AGE---------------------EKVILGGA 816 (917)
Q Consensus 769 --~~L~s~s~Dg~I~iwDl~--t-g~~----i~~~-~~~~~i~~l~~-s~~---------------------~~lv~gs~ 816 (917)
-.+++|...|.+.+|.+. . +.. .... .+.+++..+.. +.+ ..+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 468889999999999764 1 211 1111 23445444432 110 23566677
Q ss_pred CCeEEEEECCCCEEEEEEecCCCceEE--Ee-----ecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC----CCEEEEE
Q psy3053 817 LGMVYLVDLIQVQLLKQVRAHKDAVLS--LH-----FDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE----DAISCVA 885 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~~h~~~V~s--is-----~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~----~~V~sla 885 (917)
+..++++...+.+.........-.... +. ..+..|++-..+|.|+++.+..-+.+....-.. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 889999999988876655422111111 11 246668888999999999999988887776432 2345567
Q ss_pred EcCCCCEEEEEeC
Q psy3053 886 WDEKRKRLISGNL 898 (917)
Q Consensus 886 fSpdg~~LaSgs~ 898 (917)
++++|..++-.|.
T Consensus 314 is~~Gdi~~~~gp 326 (395)
T PF08596_consen 314 ISRNGDIFYWTGP 326 (395)
T ss_dssp E-TTS-EEEE-SS
T ss_pred ECCCCCEEEEeCc
Confidence 7888887665543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=74.11 Aligned_cols=114 Identities=15% Similarity=0.246 Sum_probs=82.3
Q ss_pred eEEEecC-CCCEEEEE----ECCCe----EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 668 SCVAWDE-KRKRLISG----SWDCT----VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 668 t~l~~sp-d~~~L~Sg----s~Dgt----I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
.++.|+. ++..+.|. +.+|. -++|++..+ +............+.|.|++++|+.+.++.|+.||+|.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~----klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN----KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC----ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 5566654 33444433 33443 345665433 11122344567888999999999999999999999999
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
+||...+..... ...-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999987644332 23456789999999999999999999999998644
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.024 Score=64.66 Aligned_cols=212 Identities=11% Similarity=0.108 Sum_probs=121.0
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-------------------------------------------ee
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-------------------------------------------SA 618 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-------------------------------------------~~ 618 (917)
.|+++.|+++..-++.|...|.|.||.+...+.-. -+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998764321100 01
Q ss_pred eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe--cc------CCCceeEEEecC-----CC---CEEEEE
Q psy3053 619 VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL--AG------HEDAISCVAWDE-----KR---KRLISG 682 (917)
Q Consensus 619 ~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l--~~------H~~~Vt~l~~sp-----d~---~~L~Sg 682 (917)
....++|++++.+ |=.++|+|..+|.+.|.|++....+..- .. ....|+++.|+- |+ -.++.|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1124678888886 4559999999999999999877766542 22 335688888852 32 478899
Q ss_pred ECCCeEEEEeCCCC-CCCccCCcceeee-ccCCCceEEEE-EeCC-----------------C---CEEEEEECCCeEEE
Q psy3053 683 SWDCTVRVWNTGAS-WSHMKPSKSLVSQ-LDLDNRIKCLA-ISKD-----------------N---NQLAVGTEAGELII 739 (917)
Q Consensus 683 s~DgtI~vWdl~~~-~~~~~~~~~~~~~-~~h~~~V~~l~-~spd-----------------g---~~Lasgs~dG~I~i 739 (917)
...|.+.+|.+... ..... ...... ..+.++|..+. ++.+ | ..+++...+..+++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~--v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFS--VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EE--EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred eCCCCEEEEEEecCCCCceE--EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999987521 11110 111111 24556665555 3222 1 12344455667999
Q ss_pred EECCCCeeeEEecCCCCCCeEEEEEe-----cCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 740 WSLENHLMTQQLSDDINASVNGVLFS-----EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 740 wDl~~~~~~~~l~~~h~~~V~~v~fs-----pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
+...+.+...... ........+++- ..+..|++-..+|.++++.+..-+.+......
T Consensus 240 ~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 240 FKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp E-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred EeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 9988877666554 222233334442 35667788888999999999888777666553
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.021 Score=60.84 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=114.9
Q ss_pred eeccCCcceEEEEEeCCCcEE-EEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 575 FCHSHKEAITAVAICGEGISV-ASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~L-asgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
.+.+-.+.+++++|.|+.+.| ++....+.|...+. +|+.++.+.... ...-.+++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344555669999999986655 45556677777775 578888776654 456788888888777766668999999884
Q ss_pred cCe------eeEEec-----cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC--CCc--cCCcceeeeccCCCceE
Q psy3053 653 CGR------IVTELA-----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW--SHM--KPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 653 tg~------~i~~l~-----~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~--~~~--~~~~~~~~~~~h~~~V~ 717 (917)
... ....+. .+...+-.++|++.++.|+.+-...-..++.+.... ... ............-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111121 255678999999998888888777777777765411 000 00000000112334578
Q ss_pred EEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEec--CCC------CCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 718 CLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLS--DDI------NASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 718 ~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h------~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
+++++|.. ++++.+..+..|..+| .+|+.+..+. .+. -...-.|+|.++|++.++ ++-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99999965 5666677778888899 5666655443 111 135788999999855444 455555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.12 Score=59.65 Aligned_cols=243 Identities=15% Similarity=0.111 Sum_probs=137.9
Q ss_pred ceeEEEecCCCCEEEEE-ECCC----eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----
Q psy3053 666 AISCVAWDEKRKRLISG-SWDC----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG----- 735 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sg-s~Dg----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG----- 735 (917)
.+...+++|++++++.+ +..| ++++.|+.++. .+..... ......+.|.++++.++....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~-------~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK-------FLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE-------EEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc-------CcCCccc-ccccceEEEeCCCCEEEEEEeCcccccc
Confidence 34467889999988754 4444 59999998871 1111111 11223499999998877665433
Q ss_pred ------eEEEEECCCCeee--EEecCCCCCC-eEEEEEecCCCEEEEEeC---C-CeEEEEECCCC-----eEEEEeecC
Q psy3053 736 ------ELIIWSLENHLMT--QQLSDDINAS-VNGVLFSEDGCRVLSCGN---N-CMLNVYDLTTG-----MQVCNKVFE 797 (917)
Q Consensus 736 ------~I~iwDl~~~~~~--~~l~~~h~~~-V~~v~fspdg~~L~s~s~---D-g~I~iwDl~tg-----~~i~~~~~~ 797 (917)
.|+.|.+.+.... ..+....... ...+..++|+++++.... + ..+.+.|+..+ .........
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 3788888776432 3333222233 678889999999875443 2 45788888764 333333323
Q ss_pred -CceEEEEEeCCCEEEEEe---CCCeEEEEECCCCE---EEEEEecCCC--ceEEEeecCCEEE-EEeCCC--eEEEEEC
Q psy3053 798 -EKLLCLSWAGEEKVILGG---ALGMVYLVDLIQVQ---LLKQVRAHKD--AVLSLHFDNCTML-VGCWDS--CVVIYDV 865 (917)
Q Consensus 798 -~~i~~l~~s~~~~lv~gs---~dG~I~vwdl~~~~---~i~~l~~h~~--~V~sis~dg~~La-sgs~DG--~I~Iwdl 865 (917)
+....+...++..++... ..+.|...++.+.. ....+..+.. .+..+...+++|+ ....++ .|+++++
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 333444445553444332 23678888887765 2334545554 5666766555544 444554 6888999
Q ss_pred cCCeEEEEecC-CCCCEEEEEEcCCCCEEEE--Ee--CCCcEEEEecCcceEEEEe
Q psy3053 866 ECGRIVTELAG-HEDAISCVAWDEKRKRLIS--GN--LVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 866 ~tg~~l~~l~~-h~~~V~slafSpdg~~LaS--gs--~DG~V~IWdl~~~ll~~Lt 916 (917)
..+.....+.. -.+.|..+...+++..+.. .| .-+++..||+....+..++
T Consensus 357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 357 DDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp T-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 84444444433 3445677766666654432 22 3467888888877666553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0066 Score=71.39 Aligned_cols=256 Identities=12% Similarity=0.027 Sum_probs=143.7
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.+.+|+..|.++|+-+.+++.+..+.-.. .+-+.--++..++.++..+.+|....|.= .|.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD-----------------~HHp 130 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGD-----------------THHP 130 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCC-----------------cCCC
Confidence 46688899999999999998887765211 11111111222222332222222222210 1111
Q ss_pred ceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEecCCCCCCeEEE-------------------EEecCCCEEEEE
Q psy3053 715 RIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLSDDINASVNGV-------------------LFSEDGCRVLSC 774 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~h~~~V~~v-------------------~fspdg~~L~s~ 774 (917)
.++--.=.-||+++.+-.. ++.|...+++..++-+.+..+....+..+ -++|||+.+...
T Consensus 131 ~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~ 210 (635)
T PRK02888 131 HMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDP 210 (635)
T ss_pred cccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecc
Confidence 1111111236777777664 55666667666554443332222222222 234566554322
Q ss_pred -eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEe--------------------------------------
Q psy3053 775 -GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGG-------------------------------------- 815 (917)
Q Consensus 775 -s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs-------------------------------------- 815 (917)
-..+.+.+.|..+.+...++...+....+.+++++..+..+
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence 23456788888887777776666555555555554433222
Q ss_pred ---CCCeEEEEECCC-----CEEEEEEec-CCCceEEEeecCCEEEEEe-CCCeEEEEECcCCeE------------EEE
Q psy3053 816 ---ALGMVYLVDLIQ-----VQLLKQVRA-HKDAVLSLHFDNCTMLVGC-WDSCVVIYDVECGRI------------VTE 873 (917)
Q Consensus 816 ---~dG~I~vwdl~~-----~~~i~~l~~-h~~~V~sis~dg~~Lasgs-~DG~I~Iwdl~tg~~------------l~~ 873 (917)
.++.|.+.|..+ .+.+..+.. ....=..++|||+++++++ .+++|.|.|+.+.+. +.+
T Consensus 291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 291 KTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 124577777776 344444432 2222234589999977765 488999999987552 444
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 874 LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 874 l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
..--.++ ...+|+++|....|...|..|..|+++.
T Consensus 371 vevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4433333 4578999999888889999999999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.036 Score=63.38 Aligned_cols=206 Identities=17% Similarity=0.158 Sum_probs=146.3
Q ss_pred EEEEEeCCCcEEE-EEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEeccCeeeEE
Q psy3053 584 TAVAICGEGISVA-SVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVECGRIVTE 659 (917)
Q Consensus 584 tsv~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~tg~~i~~ 659 (917)
..+++++++..++ +...++.|.+.|..+.+......... .-..++++++++.+.++.. ++++.+.|..+++.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4678888887554 44456899999987777766655444 4467889999987777655 68999999999988887
Q ss_pred eccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC---C
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---G 735 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---G 735 (917)
...-..+ ..++++|+|+.++.+. .++.|.+.|........ ...............+.++++|..+.+.... +
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 6544445 8999999999666555 78899999965541110 0101112334455778999999876665444 5
Q ss_pred eEEEEECCCCeeeEE-ecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeEEEEee
Q psy3053 736 ELIIWSLENHLMTQQ-LSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~-l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~~i~~~~ 795 (917)
.+...|..++..... ...... ....+..+|+|+.+.+... .+.+.+.|..+........
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 899999998877766 221222 5678899999999888854 4889999988876665543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.061 Score=64.10 Aligned_cols=244 Identities=16% Similarity=0.094 Sum_probs=138.5
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeecccc----ceEEEEEeCCCCEEEEEec------ccEEEEEEeccCeeeEEecc
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSM----TLSSLCILPDNCTMLVGCW------DSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~----~V~sl~~spd~~~Lasgs~------Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
..++.++.|+.+...|..+|+.+........ .+.+.-...++ .+++++. +|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999998876543211 12111111134 4555432 68999999999988766432
Q ss_pred CCC-------------------------------cee-EEEecCCCCEEEEEECC-----C-----------eEEEEeCC
Q psy3053 663 HED-------------------------------AIS-CVAWDEKRKRLISGSWD-----C-----------TVRVWNTG 694 (917)
Q Consensus 663 H~~-------------------------------~Vt-~l~~spd~~~L~Sgs~D-----g-----------tI~vWdl~ 694 (917)
-.. .+. .+++.+...+++.+... + +|.--|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 110 111 23555555566655422 2 34445555
Q ss_pred CCCCCccCCcceeee--ccCCCceEEEEEeCCCC---EEEEEECCCeEEEEECCCCeeeEEec-----------CCCC-C
Q psy3053 695 ASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNN---QLAVGTEAGELIIWSLENHLMTQQLS-----------DDIN-A 757 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~---~Lasgs~dG~I~iwDl~~~~~~~~l~-----------~~h~-~ 757 (917)
++............. ........-+.+..+|+ .++.++.+|.+++.|..+|+.+.... .... .
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 552111100000000 01112223333434665 78899999999999999998752210 0000 0
Q ss_pred C----------------------------eEEEEEecCCCEEEEEeC---------------------------------
Q psy3053 758 S----------------------------VNGVLFSEDGCRVLSCGN--------------------------------- 776 (917)
Q Consensus 758 ~----------------------------V~~v~fspdg~~L~s~s~--------------------------------- 776 (917)
+ -..++++|+..++.....
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 0 012556665555443322
Q ss_pred CCeEEEEECCCCeEEEEeecCCce-EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC
Q psy3053 777 NCMLNVYDLTTGMQVCNKVFEEKL-LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH 837 (917)
Q Consensus 777 Dg~I~iwDl~tg~~i~~~~~~~~i-~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h 837 (917)
-|.|.-+|+.+|+.........+. ........+.+++++.+|.++.+|..+|+.+.+.+..
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 245788888888887766544332 1222224447778888999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.019 Score=64.14 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=116.1
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEec---C----CCEEEEEeC----------CCeEEEEECCCC-------eE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSE---D----GCRVLSCGN----------NCMLNVYDLTTG-------MQ 790 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp---d----g~~L~s~s~----------Dg~I~iwDl~tg-------~~ 790 (917)
+.|++.|..+.+.+..+.-.....+.+++... + ..++++|+. .|.+.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888877776665533444555544332 2 456776653 289999999884 33
Q ss_pred EEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE-EEEEEe-cCCCceEEEeecCCEEEEEeCCCeEEEEECcC-
Q psy3053 791 VCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ-LLKQVR-AHKDAVLSLHFDNCTMLVGCWDSCVVIYDVEC- 867 (917)
Q Consensus 791 i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~-~i~~l~-~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~t- 867 (917)
+.....++++.+++.-.+ .+++ +..+.|.+|++...+ ....-. .....++++...++++++|+....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEESS-EEEEEEETT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred EEEEeecCcceEhhhhCC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence 455667899999988855 6444 445899999998777 443332 23448888888888999999988888886543
Q ss_pred CeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 868 GRIVTELAG--HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 868 g~~l~~l~~--h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+..+..+.. ....++++.+-++++.++.++.+|.+.++..+.
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 333333322 345588898886768999999999999999873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.16 Score=58.73 Aligned_cols=241 Identities=18% Similarity=0.188 Sum_probs=132.7
Q ss_pred eEEEEEeCCCCEEEEEe-cc----cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC-----------eE
Q psy3053 625 LSSLCILPDNCTMLVGC-WD----SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC-----------TV 688 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs-~D----g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg-----------tI 688 (917)
+....++||++++|.+- .. ..+++.|+++|+.+...-... .-..+.|.++++.++....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34677899999988762 23 469999999997765321111 123399999988877665443 37
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCc-eEEEEEeCCCCEEEEEECC----CeEEEEECCCC----eeeEEecCCCCCCe
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNR-IKCLAISKDNNQLAVGTEA----GELIIWSLENH----LMTQQLSDDINASV 759 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~Lasgs~d----G~I~iwDl~~~----~~~~~l~~~h~~~V 759 (917)
..|.+.+.... ..+......... ...+..++++++++..+.. ..+.+.|+..+ .....+.....+..
T Consensus 205 ~~~~~gt~~~~----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 205 YRHKLGTPQSE----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp EEEETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred EEEECCCChHh----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 78887665211 012211222222 5688899999988765432 35788888874 23333331223333
Q ss_pred EEEEEecCCCEEEEEe---CCCeEEEEECCCCeE---E-EEeecCC--ceEEEEEeCCCEEEEEeCCC--eEEEEECCCC
Q psy3053 760 NGVLFSEDGCRVLSCG---NNCMLNVYDLTTGMQ---V-CNKVFEE--KLLCLSWAGEEKVILGGALG--MVYLVDLIQV 828 (917)
Q Consensus 760 ~~v~fspdg~~L~s~s---~Dg~I~iwDl~tg~~---i-~~~~~~~--~i~~l~~s~~~~lv~gs~dG--~I~vwdl~~~ 828 (917)
..+... .+.+++... ..+.|...++.+... . ....... .+..+....+..++....++ .|+++++..+
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 333333 444444443 235677777776542 2 2233333 46667776774555555554 6889999844
Q ss_pred EEEEEEec-CCCceEEEe--ecCCEE-EEE-eC--CCeEEEEECcCCeEE
Q psy3053 829 QLLKQVRA-HKDAVLSLH--FDNCTM-LVG-CW--DSCVVIYDVECGRIV 871 (917)
Q Consensus 829 ~~i~~l~~-h~~~V~sis--~dg~~L-asg-s~--DG~I~Iwdl~tg~~l 871 (917)
.....+.. ..+.|..++ ++++.+ ++. |. -+++..||+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44444443 344455554 344433 222 22 367888888888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=7.9e-05 Score=84.94 Aligned_cols=196 Identities=14% Similarity=0.182 Sum_probs=127.3
Q ss_pred ceEEEEEeCCC--cEEEEEecCCceEEEeccCCce--eeeeeccccceEEEEEeC-CCCEEEEEec----ccEEEEEEec
Q psy3053 582 AITAVAICGEG--ISVASVGRDAMLKIHSLKTGRQ--ERSAVLSSMTLSSLCILP-DNCTMLVGCW----DSCVVIYDVE 652 (917)
Q Consensus 582 ~Vtsv~fSpdg--~~Lasgs~Dg~I~IWd~~t~~~--~~~~~~~~~~V~sl~~sp-d~~~Lasgs~----Dg~I~Iwdl~ 652 (917)
.+.|++..-+. ..++.|..+|.|.+-......- ......+....++++|.+ |.+.||+|-. |..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 35555554433 4678888899998887754322 223445666788999988 5667777743 6789999998
Q ss_pred cC----eeeEEecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCC
Q psy3053 653 CG----RIVTELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNN 726 (917)
Q Consensus 653 tg----~~i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 726 (917)
++ +....+.+ -.....+++|..+.+.+.+|.....++++|++.... ....-....+..+.++| .++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--------~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--------SVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--------hhhhhhhhhcccceecCCCCC
Confidence 76 11222222 345566899998889999999999999999874310 00111223567788888 777
Q ss_pred EEEEEECCCeEEEEEC-CCC-eeeEEec---CCCCCCeEEEEEecCC-CEEEEEe-CCCeEEEEECC
Q psy3053 727 QLAVGTEAGELIIWSL-ENH-LMTQQLS---DDINASVNGVLFSEDG-CRVLSCG-NNCMLNVYDLT 786 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl-~~~-~~~~~l~---~~h~~~V~~v~fspdg-~~L~s~s-~Dg~I~iwDl~ 786 (917)
++++-. ||.|.+||. .+- .++..+. ......+..++|.|.. ..+++.. ..++|+.+|+.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 777755 999999993 322 2222222 1223458899999942 2444444 45789999975
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=4.8e-05 Score=86.66 Aligned_cols=196 Identities=15% Similarity=0.225 Sum_probs=128.9
Q ss_pred eEEEEEeC--CCCEEEEEecccEEEEEEeccCee--eEEeccCCCceeEEEecC-CCCEEEEEE----CCCeEEEEeCCC
Q psy3053 625 LSSLCILP--DNCTMLVGCWDSCVVIYDVECGRI--VTELAGHEDAISCVAWDE-KRKRLISGS----WDCTVRVWNTGA 695 (917)
Q Consensus 625 V~sl~~sp--d~~~Lasgs~Dg~I~Iwdl~tg~~--i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs----~DgtI~vWdl~~ 695 (917)
+.|+++.- +..++++|..+|.|.+-......- .....+|....++++|++ |.+.||.|- .|..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 44555433 345888999999999888764322 344567889999999988 556676653 367899999987
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe-eeEEecCCCCCCeEEEEEec-CCCEEEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL-MTQQLSDDINASVNGVLFSE-DGCRVLS 773 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h~~~V~~v~fsp-dg~~L~s 773 (917)
.-........... +......+++|..+.+++.+|.....+.++|++... ....+ ....+..+.++| .+.++++
T Consensus 139 ~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 139 LLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCceec
Confidence 6332111111111 234455688999899999999999999999998432 12222 234667788888 7777776
Q ss_pred EeCCCeEEEEEC-CCC-eEEEEee-----cCCceEEEEEeC--CCEEEEEe-CCCeEEEEECC
Q psy3053 774 CGNNCMLNVYDL-TTG-MQVCNKV-----FEEKLLCLSWAG--EEKVILGG-ALGMVYLVDLI 826 (917)
Q Consensus 774 ~s~Dg~I~iwDl-~tg-~~i~~~~-----~~~~i~~l~~s~--~~~lv~gs-~dG~I~vwdl~ 826 (917)
.. ||.+.+||. ++- .++.... ....+..++|.| .|.+++.. ..++|+.+|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 65 999999993 221 1111111 223588899986 34555544 45899999985
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.3 Score=55.84 Aligned_cols=254 Identities=13% Similarity=0.113 Sum_probs=163.1
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCC-CceEEEEEeC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLD-NRIKCLAISK 723 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp 723 (917)
+.+++..+.+....+..+. ....+...+++..+.... ....+..-+.... ......... .....+++++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n--------~~~~~~~~g~~~p~~i~v~~ 83 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN--------TVTQSLSVGGVYPAGVAVNP 83 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccc--------eeeeeccCCCccccceeeCC
Confidence 4555555554444444333 455667777775444333 2223444443311 000111111 4456788888
Q ss_pred CCCEE-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCc
Q psy3053 724 DNNQL-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 724 dg~~L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwDl~tg~~i~~~~~~~~ 799 (917)
.+..+ +....++.|.+.|..+.+.......+ .....++++++++.+.++.. ++++.+.|..++..+........
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 88744 44455689999998887777776533 36778999999988887766 68999999999988887555444
Q ss_pred eEEEEEeCCCE-EE-EEeCCCeEEEEECCCCEEEE-E----Ee-cCCCceEEEeecCCEEEEEeCC---CeEEEEECcCC
Q psy3053 800 LLCLSWAGEEK-VI-LGGALGMVYLVDLIQVQLLK-Q----VR-AHKDAVLSLHFDNCTMLVGCWD---SCVVIYDVECG 868 (917)
Q Consensus 800 i~~l~~s~~~~-lv-~gs~dG~I~vwdl~~~~~i~-~----l~-~h~~~V~sis~dg~~Lasgs~D---G~I~Iwdl~tg 868 (917)
...+++++++. ++ +-..++.|.+.|........ . .. +.......++++|..+.+.... +.+...|..++
T Consensus 162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 47888888766 33 34468999999977766553 1 22 2223445568899876665443 58999999888
Q ss_pred eEEEE-ecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcc
Q psy3053 869 RIVTE-LAGHEDAISCVAWDEKRKRLISGN-LVGAPKLYATEFY 910 (917)
Q Consensus 869 ~~l~~-l~~h~~~V~slafSpdg~~LaSgs-~DG~V~IWdl~~~ 910 (917)
..... .......-..+..+|+|..+.+.. ..+.+.+-|....
T Consensus 242 ~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 242 NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 87765 221111456788999999988874 4477888777654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.33 Score=51.63 Aligned_cols=269 Identities=11% Similarity=0.043 Sum_probs=143.5
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc-CC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~-H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+.++ ++++..+.++.-++|.|+.+......+.. .. +--.++.. .|++...+..|.-..+.|+.+..
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdps----- 159 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS----- 159 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCC-----
Confidence 3444444 45777788888899999987644332221 11 23334444 57888888877778889987652
Q ss_pred Ccceeeec-cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 703 SKSLVSQL-DLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 703 ~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
...+.... ........+++| |++...++.|+-+.+.|+........+.. .....+.++..+++-.+++..+ .-+
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egv 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGV 235 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cce
Confidence 11222211 222333566666 77778888999999999987644333321 1233677887777655555443 346
Q ss_pred EEEECCCCeEEEEeec--CCc---eEEEEEeCCCEEEEEeCCCeEEEEECCCCE---EEEEEecCCCceEEEeecCCEEE
Q psy3053 781 NVYDLTTGMQVCNKVF--EEK---LLCLSWAGEEKVILGGALGMVYLVDLIQVQ---LLKQVRAHKDAVLSLHFDNCTML 852 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~--~~~---i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~---~i~~l~~h~~~V~sis~dg~~La 852 (917)
.+-|..+.+....+.. .+. +..+..+++ +......+.-+.+.|..+.. ....+......-..+...+.++.
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~y 314 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNY 314 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeE
Confidence 6777665543322221 122 223344444 44444444444555554321 11111111112233333444444
Q ss_pred EEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 853 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 853 sgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+..+ ...+-+....+......+-...+.+.+.+-+.+.+.+...+|.+.+|+..
T Consensus 315 iadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 315 IADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 44433 23333433333222222222334445555566688899999999999863
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.002 Score=75.58 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=118.3
Q ss_pred eeEEEecCCCCEEEEEE----CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q psy3053 667 ISCVAWDEKRKRLISGS----WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sgs----~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl 742 (917)
-+-..|+|...+++.++ ..|+|.|+-- ++. .......+-.+++++|+|..-.|+.|-.-|.+.+|..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad-tGE--------Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD-TGE--------PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec-CCC--------CCcccccceehhhhccChHHHHHhhccccceeEEEec
Confidence 34567999989988876 4578888842 221 1111122334678999999999999999999999998
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE-----EeecCCce--EEEEEeCCC------
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC-----NKVFEEKL--LCLSWAGEE------ 809 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~-----~~~~~~~i--~~l~~s~~~------ 809 (917)
.+.+.-. ....|..+|..+.||++|..++++..-|.+.+|....-..+. .......+ .|+..++++
T Consensus 89 ~~~e~ht-v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l 167 (1416)
T KOG3617|consen 89 NTTETHT-VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL 167 (1416)
T ss_pred CCceeee-eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence 7765444 444899999999999999999999999999999875322221 11222333 333334331
Q ss_pred -EEEEEeCCCeEE-EEECCCCEEEEEEecCCCceE-EEeecCCEEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 810 -KVILGGALGMVY-LVDLIQVQLLKQVRAHKDAVL-SLHFDNCTMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 810 -~lv~gs~dG~I~-vwdl~~~~~i~~l~~h~~~V~-sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
..++++.+..+- .++.+.... ..... +-.++|..+..++.+|+|+-.|- .|++....
T Consensus 168 aKaaVtgDe~alD~~fnwk~~~a-------~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~ 227 (1416)
T KOG3617|consen 168 AKAAVTGDESALDEPFNWKESLA-------ERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVH 227 (1416)
T ss_pred hhhhccCchhhhcccccCccchh-------hccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEE
Confidence 223333332222 222221100 01111 11568888899999999887773 35444433
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.32 Score=55.03 Aligned_cols=272 Identities=18% Similarity=0.171 Sum_probs=141.4
Q ss_pred eCCCCEEEEE---------ecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 631 LPDNCTMLVG---------CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 631 spd~~~Lasg---------s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
|||+++++.. +..+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 5777776664 3357899999999876554443 67789999999999999876 67899998766521000
Q ss_pred -CCcceeeeccC---------CCceEEEEEeCCCCEEEEEECC-CeEEEEECCCCeeeEEecCCCC---CCeEEEEEecC
Q psy3053 702 -PSKSLVSQLDL---------DNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHLMTQQLSDDIN---ASVNGVLFSED 767 (917)
Q Consensus 702 -~~~~~~~~~~h---------~~~V~~l~~spdg~~Lasgs~d-G~I~iwDl~~~~~~~~l~~~h~---~~V~~v~fspd 767 (917)
.........+. -+.-..+.||||++.||....| ..|..+.+. ... ... ..+..+.+-.-
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~-~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYS-PPDSQYPEVESIRYPKA 151 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EES-SSTESS-EEEEEE--BT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee------ccC-CccccCCcccccccCCC
Confidence 00000000000 1223578899999999876543 223222211 000 111 12334444322
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEE--e----ecCCceEEEEEeCCCE-EEEEeCC-----CeEEEEECCCCEEEEEEe
Q psy3053 768 GCRVLSCGNNCMLNVYDLTTGMQVCN--K----VFEEKLLCLSWAGEEK-VILGGAL-----GMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 768 g~~L~s~s~Dg~I~iwDl~tg~~i~~--~----~~~~~i~~l~~s~~~~-lv~gs~d-----G~I~vwdl~~~~~i~~l~ 835 (917)
|.--.. -.+.++|+.+++.... . ....-+..+.|.+++. +++.-.+ ..+.++|..++.......
T Consensus 152 G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 152 GDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp TS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred CCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 222211 1477788887765321 1 1233478899988776 5543322 356677887664322221
Q ss_pred -cCCCc-----eEEEe-ecC-CEEEEEeCCCe--EEEEECcCCeEEEEecCCCCCEEE-EEEcCCCCEEE-EEeCC--Cc
Q psy3053 836 -AHKDA-----VLSLH-FDN-CTMLVGCWDSC--VVIYDVECGRIVTELAGHEDAISC-VAWDEKRKRLI-SGNLV--GA 901 (917)
Q Consensus 836 -~h~~~-----V~sis-~dg-~~Lasgs~DG~--I~Iwdl~tg~~l~~l~~h~~~V~s-lafSpdg~~La-Sgs~D--G~ 901 (917)
...+. ..... +++ .++.....||- |.+.+...+.. ..+....-.|.. +.|+++++.|+ ++..+ +.
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGE 306 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTS
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCc
Confidence 12222 12222 344 45555557774 55556665553 455545556744 68888887766 44432 33
Q ss_pred EEEEe--cC-cceEEEEe
Q psy3053 902 PKLYA--TE-FYLLYVLT 916 (917)
Q Consensus 902 V~IWd--l~-~~ll~~Lt 916 (917)
-.+|. ++ +..+.+||
T Consensus 307 r~lY~v~~~~~~~~~~LT 324 (353)
T PF00930_consen 307 RHLYRVSLDSGGEPKCLT 324 (353)
T ss_dssp BEEEEEETTETTEEEESS
T ss_pred eEEEEEEeCCCCCeEecc
Confidence 44444 44 44665554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.012 Score=67.68 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=102.0
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEe---cc-cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEE-EEECCC
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGC---WD-SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDC 686 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs---~D-g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~Dg 686 (917)
|...+.+......+..-+|+|++..++..+ .. ..+.++++++++....+. ..+.-..-+|+|||+.|+ +...||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 334444555555667778999998766542 22 469999999887655443 233345568999998776 455677
Q ss_pred eEEEE--eCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-Ce--EEEEECCCCeeeEEecCCCCCCeEE
Q psy3053 687 TVRVW--NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-GE--LIIWSLENHLMTQQLSDDINASVNG 761 (917)
Q Consensus 687 tI~vW--dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-G~--I~iwDl~~~~~~~~l~~~h~~~V~~ 761 (917)
...+| |+.+.. ........+.-+.-.|+|+|+.++..+.. |. |.+.+.+.+...+... ..... ..
T Consensus 261 ~~~iy~~dl~~~~--------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~-~~ 330 (425)
T COG0823 261 SPDIYLMDLDGKN--------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGN-SN 330 (425)
T ss_pred CccEEEEcCCCCc--------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCC-cC
Confidence 66665 554431 11122222333367899999988876543 43 6777777665533332 22222 27
Q ss_pred EEEecCCCEEEEEeCC-Ce--EEEEECCCCe
Q psy3053 762 VLFSEDGCRVLSCGNN-CM--LNVYDLTTGM 789 (917)
Q Consensus 762 v~fspdg~~L~s~s~D-g~--I~iwDl~tg~ 789 (917)
-.|+|||++++..+.. |. |.+.|+.++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 7899999999987743 33 5555555443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.35 Score=55.89 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=100.1
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
.|.||+.. |+.+..+.--.+.+.++.|+.+ ..|+....||+++++|+.... ............-.+..+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 47777765 4555554433378999999875 566677789999999986442 00000011000011112222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCe-eeEEecC--C-----CC-CCeEE-EEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 725 NNQLAVGTEAGELIIWSLENHL-MTQQLSD--D-----IN-ASVNG-VLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~~~-~~~~l~~--~-----h~-~~V~~-v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
| +++-+.++.+.+..-.... ..+.+.. . +. ..... ..++.+....+....++.+.+.+-...+. .
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 4 3333445555544322211 1111110 0 00 01111 23444555555555556666444322211 2
Q ss_pred ecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecC-CCceEEEeecCC
Q psy3053 795 VFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAH-KDAVLSLHFDNC 849 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h-~~~V~sis~dg~ 849 (917)
...+++..++.+|++. ++.-..+|.+.+.+..-.+....+... ......+.|.|+
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 3356899999998766 555566799999887666666555443 344455555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.043 Score=63.31 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=113.4
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE---CC-CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS---WD-CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs---~D-gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
.+.+-|.+ |...+.+..-...+..-+|+|++..++..+ .. ..+.++++.++.. .... ...+.-..-+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~~i~---~~~g~~~~P~ 244 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----PVIL---NFNGNNGAPA 244 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----ceee---ccCCccCCcc
Confidence 34444444 555555655566777889999988766543 22 4688899887721 1111 2334445678
Q ss_pred EeCCCCEEEEE-ECCCe--EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCeEEEEe
Q psy3053 721 ISKDNNQLAVG-TEAGE--LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NC--MLNVYDLTTGMQVCNK 794 (917)
Q Consensus 721 ~spdg~~Lasg-s~dG~--I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg--~I~iwDl~tg~~i~~~ 794 (917)
|+|||+.|+.. ..||. |++.|+.++...+ +. ...+.-..=.|+|||+.++-++. .| .|.+++...+......
T Consensus 245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CCCCCCEEEEEECCCCCccEEEEcCCCCccee-cc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 99999877654 45555 6777888776443 44 22333336789999999887764 33 3666777666543222
Q ss_pred ecCCceEEEEEeCCCEEEEEeC--CCe--EEEEECCCCEEEEEEec-CCCceEEEeecCCEEEEEe
Q psy3053 795 VFEEKLLCLSWAGEEKVILGGA--LGM--VYLVDLIQVQLLKQVRA-HKDAVLSLHFDNCTMLVGC 855 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv~gs~--dG~--I~vwdl~~~~~i~~l~~-h~~~V~sis~dg~~Lasgs 855 (917)
.....-.+-.|+|++..++... +|. |.+.|+.++...+.+.. ....-.+.+++++.++..+
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 2222223666777776444332 455 66666655543333321 1111223355666655443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.31 Score=51.85 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=122.5
Q ss_pred eEEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy3053 716 IKCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~ 793 (917)
...+.+..+|.++-+.+.-| .|+.+|+.+++......-+...--..++... ++.....-.++...+||..+-+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 56788877888888877766 6999999999887766533333344555553 34445556788999999999999999
Q ss_pred eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec--CCCceEEE---ee-cCCEEEEEeCCCeEEEEECcC
Q psy3053 794 KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA--HKDAVLSL---HF-DNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 794 ~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~--h~~~V~si---s~-dg~~Lasgs~DG~I~Iwdl~t 867 (917)
+...+.-..++.+++ .++....+..++.+|..+.+..+.+.. ...++..+ .+ +|...|=.-....|..-|..+
T Consensus 126 ~~y~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 126 FPYPGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp EE-SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred EecCCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 988888777886665 788888889999999999887776643 33444444 33 666666666677888999999
Q ss_pred CeEEEEecC------------C---CCCEEEEEEcCCCCEEEEEeC
Q psy3053 868 GRIVTELAG------------H---EDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 868 g~~l~~l~~------------h---~~~V~slafSpdg~~LaSgs~ 898 (917)
|+.+..+.- + .+-.+.+|+.|+...+...|.
T Consensus 205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 999887621 1 245799999997776665553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00052 Score=69.87 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=91.7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEE-eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC-EEEEEEecCCCceEEEee-
Q psy3053 770 RVLSCGNNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHF- 846 (917)
Q Consensus 770 ~L~s~s~Dg~I~iwDl~tg~~i~~-~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~-~~i~~l~~h~~~V~sis~- 846 (917)
.+...+.||.|+-++++..+.... .........+ ...+..+++|+.+|.|.+|..... ........-...|.++-|
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee-cccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 344556677777777654322111 0111111111 122347999999999999988622 111222223445555544
Q ss_pred --cCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEecCc
Q psy3053 847 --DNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISG--NLVGAPKLYATEF 909 (917)
Q Consensus 847 --dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-~~V~slafSpdg~~LaSg--s~DG~V~IWdl~~ 909 (917)
++.+..+++.||.|+.|++..++.+.....|. .++.....+..++.++.+ |.|..++.|+++.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 45578899999999999999999988888888 677777777778888888 8888899998864
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.042 Score=66.00 Aligned_cols=181 Identities=12% Similarity=0.126 Sum_probs=106.1
Q ss_pred CceeEEEecCCCCEEEEEE------CCC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--
Q psy3053 665 DAISCVAWDEKRKRLISGS------WDC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-- 734 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs------~Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-- 734 (917)
..+...+++|+|+.++... .|. .+.+++.... ...+ .. ....+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~------~~~l---t~-g~~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV------AVQV---LE-GHSLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc------ceee---ec-CCCCCCceECCCCCceEEEecCcc
Confidence 4678899999999887665 244 4444453221 0111 11 2237788999998877776532
Q ss_pred ----------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE---EECCCCeEEE----Ee--e
Q psy3053 735 ----------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV---YDLTTGMQVC----NK--V 795 (917)
Q Consensus 735 ----------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i---wDl~tg~~i~----~~--~ 795 (917)
+.+.+.+++.+.... ...+.|..+.|||||..++... ++.|.+ -....|.... .. .
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 233333444333322 2246799999999999998776 467777 4444554111 11 1
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCC-CEEEEEEec--CCCceEEEeecCCEEEEEeCCCeE
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ-VQLLKQVRA--HKDAVLSLHFDNCTMLVGCWDSCV 860 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~-~~~i~~l~~--h~~~V~sis~dg~~Lasgs~DG~I 860 (917)
....+..+.|.+++.++++..++...+|.+.- |.....+.+ ....+.+++-....++.+..+|.+
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~ 562 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVL 562 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceE
Confidence 23346789999998888887766555555432 222222222 255666675444556666666633
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.049 Score=65.49 Aligned_cols=192 Identities=14% Similarity=0.132 Sum_probs=103.6
Q ss_pred cceEEEEEeCCCCEEEEEe------ccc--EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCe-EEEEeC
Q psy3053 623 MTLSSLCILPDNCTMLVGC------WDS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCT-VRVWNT 693 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs------~Dg--~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt-I~vWdl 693 (917)
..+.+.+++|+|+.++... .|+ .+.+++. .+.......+. ..+.-.|+|+|..|++.+.... +++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4577889999999887765 244 4544454 22222223332 3788899999998888764312 222221
Q ss_pred CCCCCCc---cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE---EECCCCee-e---EEecCCCCCCeEEEE
Q psy3053 694 GASWSHM---KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII---WSLENHLM-T---QQLSDDINASVNGVL 763 (917)
Q Consensus 694 ~~~~~~~---~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i---wDl~~~~~-~---~~l~~~h~~~V~~v~ 763 (917)
....... ........ .....|..+.|||||..++... +|.|.+ -....|.. + ..+.......+.++.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 1110000 00001110 3356799999999999888766 577777 44444531 1 112223334568899
Q ss_pred EecCCCEEEEEeCCCeEEEEECCC-CeEEEEee---cCCceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKV---FEEKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~---~~~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
|..++.++ ++..++.-.+|.+.- |....... ....+..++-++. .+++++.+|.+.+
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~~g~~~l 564 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDARAVLQL 564 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcCCceEEe
Confidence 99999855 555444444444321 22111111 1344555665553 5666666664443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0094 Score=72.56 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=101.8
Q ss_pred CCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCc-eeEEEecC-----CCCEEEEEECCCeEEEEeCCCCCCCccCCcc
Q psy3053 633 DNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDA-ISCVAWDE-----KRKRLISGSWDCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 633 d~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~-Vt~l~~sp-----d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~ 705 (917)
+.++|+.. ...+.|+-.|++.|+.+..+..|... |..++-.. .+...+.|-.+..+..||.+-...... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v--~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV--DS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee--ec
Confidence 34444443 34678999999999999999988755 66554321 133456677788999999876421111 01
Q ss_pred eeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
...........+|++-+.+| +||+|+.+|.|++||-- |..-.+..++.+.+|.+|..+.||+++++.+. ..|.+++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 11123445667888777665 68999999999999954 43344444477899999999999999987764 46777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0025 Score=77.06 Aligned_cols=106 Identities=11% Similarity=0.219 Sum_probs=78.3
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCc-eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGR-QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 664 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~ 664 (917)
++..-.+..++.|+..|.+...|+...- +...-....++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..|.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 3333345578888888888888765431 112222346789999999999999999999999999999999999888777
Q ss_pred CceeEEEe---cCCCCEEEEEECCCeEEEEeC
Q psy3053 665 DAISCVAW---DEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 665 ~~Vt~l~~---spd~~~L~Sgs~DgtI~vWdl 693 (917)
.+++++-+ ..++..++++...|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 76665544 445667888877776 6664
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.012 Score=71.75 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=94.0
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEECCCCe--EEE----EeecCCceE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-----DGCRVLSCGNNCMLNVYDLTTGM--QVC----NKVFEEKLL 801 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-----dg~~L~s~s~Dg~I~iwDl~tg~--~i~----~~~~~~~i~ 801 (917)
....|+-.|+..|+.+.........+|..++-.. .....+.|-.+..+..||.+-.. .+. .........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4567899999999999988844444455554321 13345667778889999997532 222 122345688
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
|++.+++|.+++|+.+|.|++||-...+....+++-..+|..| +.||++|++.+.. .+.+++.
T Consensus 582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 9999999999999999999999954433344556778899988 7799998877654 4666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0036 Score=72.01 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=80.2
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVN-GVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~-~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
....+.-+.|+|.-.++|.+..+|.+.++.+. .+.+.++. -++..++ +++|.|||+.|++|-.||+|++.|+.+|..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 34568889999999999999999999999988 66777776 3555565 999999999999999999999999999988
Q ss_pred EEE--eecCCceEEEEEeC
Q psy3053 791 VCN--KVFEEKLLCLSWAG 807 (917)
Q Consensus 791 i~~--~~~~~~i~~l~~s~ 807 (917)
+.. ......+.++.|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 877 55667788888874
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0026 Score=44.64 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=34.9
Q ss_pred CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 868 GRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 868 g~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
++++..+..|...|.+++|++++..+++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.09 Score=63.20 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=90.1
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-------------------
Q psy3053 723 KDNNQLAVGTEAG-----ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC------------------- 778 (917)
Q Consensus 723 pdg~~Lasgs~dG-----~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg------------------- 778 (917)
-+|++.+.|+.+| .+..||..+.+-.. ...-........+..-+|+..+.||.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 3577888888764 47889987754322 1111111111111233677777777542
Q ss_pred ----eEEEEECCCCeEEEEeec--CCceEEEEEeCCCEEEEEeCC------CeEEEEECCC-C--EEEEEEecCCCceEE
Q psy3053 779 ----MLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEKVILGGAL------GMVYLVDLIQ-V--QLLKQVRAHKDAVLS 843 (917)
Q Consensus 779 ----~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~lv~gs~d------G~I~vwdl~~-~--~~i~~l~~h~~~V~s 843 (917)
.+..||..+++-...... ...-.+++...+..+++|+.+ ..+..||..+ . ..+..+.........
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 477788877654432222 111223444444466677654 2467899886 3 334444444444444
Q ss_pred EeecCCEEEEEeCCC--eEEEEECcCCeEEEEecCCCC
Q psy3053 844 LHFDNCTMLVGCWDS--CVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 844 is~dg~~Lasgs~DG--~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
+..+|+..++||.|| ++..||..+.+.......|+.
T Consensus 509 ~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 509 ILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred EEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 567899999999888 788888887776655555543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0042 Score=43.50 Aligned_cols=39 Identities=33% Similarity=0.643 Sum_probs=34.2
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
++....+..|...|.+++|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0058 Score=70.31 Aligned_cols=93 Identities=25% Similarity=0.284 Sum_probs=78.1
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceE-EEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLS-SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~-sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
..|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..++..++ +++|.|||+.||+|-.||+|++.|+++|..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 356778999999999999999999999887 777888887887777 999999999999999999999999999877665
Q ss_pred e-ccCCCceeEEEecC
Q psy3053 660 L-AGHEDAISCVAWDE 674 (917)
Q Consensus 660 l-~~H~~~Vt~l~~sp 674 (917)
. ..-...|+++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 22446677777764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.32 Score=53.68 Aligned_cols=215 Identities=17% Similarity=0.111 Sum_probs=124.3
Q ss_pred EEeCCCCE-EEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee
Q psy3053 629 CILPDNCT-MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 629 ~~spd~~~-Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
.|.++... +.+--..+.|.-|+..+++... +. +.+.+.++..-..+..|+++.. .+.+++..++... ...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-----t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-----TLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-----EEe
Confidence 35666653 4444557788888887664322 22 3344555555545556666543 3556666443110 111
Q ss_pred eec---cCCCceEEEEEeCCCCEEEEEEC-----------CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 708 SQL---DLDNRIKCLAISKDNNQLAVGTE-----------AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 708 ~~~---~h~~~V~~l~~spdg~~Lasgs~-----------dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
... ......+.+.+.|+|.+.+.... -|.++.+|. .+..++.+. .+-..-+.++||||++.+..
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence 111 11244567788888886665433 144555554 455555444 44556678999999988887
Q ss_pred EeCC-CeEEEEECCC--CeE---EEEee---cCCceEEEEEeCCCEEEEEeC-CC-eEEEEECCCCEEEEEEecCCCceE
Q psy3053 774 CGNN-CMLNVYDLTT--GMQ---VCNKV---FEEKLLCLSWAGEEKVILGGA-LG-MVYLVDLIQVQLLKQVRAHKDAVL 842 (917)
Q Consensus 774 ~s~D-g~I~iwDl~t--g~~---i~~~~---~~~~i~~l~~s~~~~lv~gs~-dG-~I~vwdl~~~~~i~~l~~h~~~V~ 842 (917)
+... +.|.-|++.. +.. ..... ..+..-.++.+.++.+.++.. .| .|.+|+.. ++++..+......++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 7654 7788887652 211 11111 234556677777777774443 33 89999998 898888887766666
Q ss_pred EEeecC---CEEEEEe
Q psy3053 843 SLHFDN---CTMLVGC 855 (917)
Q Consensus 843 sis~dg---~~Lasgs 855 (917)
++.+-| +.|.+.+
T Consensus 259 ~~~FgG~~~~~L~iTs 274 (307)
T COG3386 259 NPAFGGPDLNTLYITS 274 (307)
T ss_pred cceEeCCCcCEEEEEe
Confidence 665533 5544443
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.017 Score=70.14 Aligned_cols=102 Identities=15% Similarity=0.286 Sum_probs=75.0
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
.+..++.|+..|.+...|+...- ..........++|++++|+.+|..++.|-.+|.|.+||+.+++..+.+. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-E 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-e
Confidence 34678888888999988876541 1122233456789999999999999999999999999999998888877 5
Q ss_pred CCCCeEEE---EEecCCCEEEEEeCCCeEEEEEC
Q psy3053 755 INASVNGV---LFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 755 h~~~V~~v---~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
+..+.+++ .+..++..++++...|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555544 34446667777777775 4543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.14 Score=46.97 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=73.3
Q ss_pred eEEEEEec---CC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEE
Q psy3053 759 VNGVLFSE---DG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 759 V~~v~fsp---dg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l 834 (917)
|+++++.. +| +.|++|+.|..|++|+ ....+..+.-.+.+.+++..+.+.++.+..+|+|-+|+-.. .+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeee
Confidence 56677665 22 5799999999999997 45778888888999999998888999999999999998632 33333
Q ss_pred ecCCCceEEE-eec----C-CEEEEEeCCCeEEE
Q psy3053 835 RAHKDAVLSL-HFD----N-CTMLVGCWDSCVVI 862 (917)
Q Consensus 835 ~~h~~~V~si-s~d----g-~~Lasgs~DG~I~I 862 (917)
+. ...++++ ..| | .-|++|-.+|.|-+
T Consensus 78 KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 33 2336666 332 2 25899999998753
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=62.63 Aligned_cols=196 Identities=11% Similarity=0.051 Sum_probs=99.9
Q ss_pred CCCCEEEEEecc------cEEEEEEeccCeeeE--EeccCCCceeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCC
Q psy3053 632 PDNCTMLVGCWD------SCVVIYDVECGRIVT--ELAGHEDAISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWS 698 (917)
Q Consensus 632 pd~~~Lasgs~D------g~I~Iwdl~tg~~i~--~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~ 698 (917)
-++...++||.+ ..+..||..++.-.. .+....... +++. -+++..+.||.++ ++..||..+..
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~- 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDK- 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCe-
Confidence 366777777753 357788877664321 111111111 2222 2567777787764 47888877652
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----------------------eEEEEECCCCeeeEEecCCC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-----------------------ELIIWSLENHLMTQQLSDDI 755 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-----------------------~I~iwDl~~~~~~~~l~~~h 755 (917)
....... .........+ .-+|.+.+.|+.++ .+..||..+.+-...-. -.
T Consensus 379 -W~~~~~m---p~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~ 451 (557)
T PHA02713 379 -WKMLPDM---PIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN-FW 451 (557)
T ss_pred -EEECCCC---CcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC-CC
Confidence 1100000 0001111112 23577778887653 47778877654322111 11
Q ss_pred CCCeEEEEEecCCCEEEEEeCC------CeEEEEECCC-CeEEEEeec--CCceEEEEEeCCCEEEEEeCCC--eEEEEE
Q psy3053 756 NASVNGVLFSEDGCRVLSCGNN------CMLNVYDLTT-GMQVCNKVF--EEKLLCLSWAGEEKVILGGALG--MVYLVD 824 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~s~D------g~I~iwDl~t-g~~i~~~~~--~~~i~~l~~s~~~~lv~gs~dG--~I~vwd 824 (917)
.......+..-+|+..+.||.+ ..+..||..+ .+-...... .....+++..++..+++|+.+| .+..||
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcC
Confidence 1122222233356677777654 2467899887 444322222 2223444445555778888887 677777
Q ss_pred CCCCEEEEEEecC
Q psy3053 825 LIQVQLLKQVRAH 837 (917)
Q Consensus 825 l~~~~~i~~l~~h 837 (917)
..+.+-...-..|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 7766544333333
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.14 Score=47.03 Aligned_cols=100 Identities=14% Similarity=0.274 Sum_probs=69.1
Q ss_pred eeEEEecC---C-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q psy3053 667 ISCVAWDE---K-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 667 Vt~l~~sp---d-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl 742 (917)
|+++++.. + .+.|+.||.|..|++|+-. .........+.|++++-... ..++.|..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----------e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----------EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----------cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 67777754 2 3689999999999999853 34455566778888887766 67999999999999975
Q ss_pred CCCeeeEEecCCCCCCeEEEEEec-C--C-CEEEEEeCCCeEE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSE-D--G-CRVLSCGNNCMLN 781 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fsp-d--g-~~L~s~s~Dg~I~ 781 (917)
. ..+...+ ....+.++++.. + | ..|++|-.+|.|-
T Consensus 71 ~--~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 S--QRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--ceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3 3344444 334466666544 2 2 2577777777653
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.21 Score=60.08 Aligned_cols=226 Identities=17% Similarity=0.126 Sum_probs=113.2
Q ss_pred CCcEEEEEecC------CceEEEeccCCceeeeeeccccc-eEEEEEeCCCCEEEEEecc------cEEEEEEeccCeee
Q psy3053 591 EGISVASVGRD------AMLKIHSLKTGRQERSAVLSSMT-LSSLCILPDNCTMLVGCWD------SCVVIYDVECGRIV 657 (917)
Q Consensus 591 dg~~Lasgs~D------g~I~IWd~~t~~~~~~~~~~~~~-V~sl~~spd~~~Lasgs~D------g~I~Iwdl~tg~~i 657 (917)
.+..++.||.+ ..+..+|..++.-.......... -.+++. -++...++||.| .++..||..+++-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34455666655 35677777766433222221111 223333 356788889888 35778888776533
Q ss_pred E--EeccCCCceeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCCccCCcceeeeccCCCceEEE-EEeCCCCEEE
Q psy3053 658 T--ELAGHEDAISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL-AISKDNNQLA 729 (917)
Q Consensus 658 ~--~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l-~~spdg~~La 729 (917)
. .+........... -+|...|.||.|| +|-.||..+..-. . . ........+. ...-+|.+.+
T Consensus 363 ~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-----~-v--a~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-----P-V--APMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred ccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCccc-----c-c--CCCCcceeeeEEEEECCEEEE
Confidence 2 1111111111111 2667888899886 4777887665211 1 0 1111112222 2233678888
Q ss_pred EEECCC------eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeEEEEeec--
Q psy3053 730 VGTEAG------ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTGMQVCNKVF-- 796 (917)
Q Consensus 730 sgs~dG------~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg~~i~~~~~-- 796 (917)
+|+.+| ++..||..++.-...-.-.....-..+ -.-++...+.||.|+ ++..||..+.+....-..
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 888654 466788776643322210011111112 233667777887776 367788777655433222
Q ss_pred CCceEEEEEeCCCEEEEEeCCC-----eEEEEECCCC
Q psy3053 797 EEKLLCLSWAGEEKVILGGALG-----MVYLVDLIQV 828 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~dG-----~I~vwdl~~~ 828 (917)
......++..++..+++|+.+| +|..||..+.
T Consensus 512 ~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2222233334444666666654 3555554443
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.28 Score=59.06 Aligned_cols=226 Identities=17% Similarity=0.145 Sum_probs=125.0
Q ss_pred CCEEEEEecc------cEEEEEEeccCeeeE--EeccCCCceeEEEecCCCCEEEEEECC------CeEEEEeCCCCCCC
Q psy3053 634 NCTMLVGCWD------SCVVIYDVECGRIVT--ELAGHEDAISCVAWDEKRKRLISGSWD------CTVRVWNTGASWSH 699 (917)
Q Consensus 634 ~~~Lasgs~D------g~I~Iwdl~tg~~i~--~l~~H~~~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl~~~~~~ 699 (917)
+.++++|+.+ ..+..+|..++.... .+. +...-.+++.. ++...++||.| .++..||.....
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-- 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-- 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--
Confidence 4455666655 357788877763322 222 22233444444 45778888888 356677776652
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe-----EEEEECCCCeeeEEecCCCCCCeEEEEE-ecCCCEEEE
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE-----LIIWSLENHLMTQQLSDDINASVNGVLF-SEDGCRVLS 773 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~-----I~iwDl~~~~~~~~l~~~h~~~V~~v~f-spdg~~L~s 773 (917)
.. ............... .-+|.+.|+|+.||. +-.||..+.+-...- .......+.+. .-+|...++
T Consensus 361 W~---~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 361 WT---PVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred ee---ccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEE
Confidence 11 111111111111111 225788899998865 666777665332221 11122222222 337777788
Q ss_pred EeCCC------eEEEEECCCCeEEEEeecC--CceEEEEEeCCCEEEEEeCCC-----eEEEEECCCCEEEE--EEecCC
Q psy3053 774 CGNNC------MLNVYDLTTGMQVCNKVFE--EKLLCLSWAGEEKVILGGALG-----MVYLVDLIQVQLLK--QVRAHK 838 (917)
Q Consensus 774 ~s~Dg------~I~iwDl~tg~~i~~~~~~--~~i~~l~~s~~~~lv~gs~dG-----~I~vwdl~~~~~i~--~l~~h~ 838 (917)
||.++ ++..||..++.-....... ..-..++.-.+..+++|+.+| +|..||..+.+... ......
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 87554 5778888877655433332 223345555565778888776 37778887765433 233344
Q ss_pred CceEEEeecCCEEEEEeCCC-----eEEEEECcCCeE
Q psy3053 839 DAVLSLHFDNCTMLVGCWDS-----CVVIYDVECGRI 870 (917)
Q Consensus 839 ~~V~sis~dg~~Lasgs~DG-----~I~Iwdl~tg~~ 870 (917)
..+.....++...++|+.|| +|..||..+.+.
T Consensus 514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 44445567888888898876 456666555443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.51 Score=52.06 Aligned_cols=189 Identities=11% Similarity=0.075 Sum_probs=112.5
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-----cccceEEEEEeCCCCEEEEEec---------ccEEEE
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-----SSMTLSSLCILPDNCTMLVGCW---------DSCVVI 648 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-----~~~~V~sl~~spd~~~Lasgs~---------Dg~I~I 648 (917)
+.++..-..+..|+++. .-+.+++.+++.....+.. .......+...|+|.+.++... ...-.+
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 34444444444555443 2345566655544222211 1233456778888877665433 111245
Q ss_pred EEec-cCeeeEEeccCCCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 649 YDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 649 wdl~-tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
|-++ .+..+..+..|-..-+.|+||||++.++.+... +.|.-+++....................+..-.++...+|.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5555 577777777776777899999999887776554 77888877631111111111222223456677888899999
Q ss_pred EEEEEECCC-eEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEe
Q psy3053 727 QLAVGTEAG-ELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCG 775 (917)
Q Consensus 727 ~Lasgs~dG-~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s 775 (917)
+-+++..+| .|..|+.. ++.+..+. -....+++++|-- +.+.|.+.+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeCCCcCEEEEEe
Confidence 886655554 89999998 88888887 3336677777753 445554444
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.41 Score=54.77 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=67.2
Q ss_pred EEEEeCCCcEEEEEecCCceEE---EeccC-C----ceeeeeec--cc---cceEEEEEe-----------CCCCEEEEE
Q psy3053 585 AVAICGEGISVASVGRDAMLKI---HSLKT-G----RQERSAVL--SS---MTLSSLCIL-----------PDNCTMLVG 640 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~I---Wd~~t-~----~~~~~~~~--~~---~~V~sl~~s-----------pd~~~Lasg 640 (917)
.++.+|+|..|+.+..+..+.+ |+... + .......+ .. ..|+++.+. +|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999998877766654 53311 1 11111111 11 457776654 346789999
Q ss_pred ecccEEEEEEeccCeeeEEeccCCCceeEEEecCCC---------CEEEEEECCCeEEEEe
Q psy3053 641 CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR---------KRLISGSWDCTVRVWN 692 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~---------~~L~Sgs~DgtI~vWd 692 (917)
..+|.|++|.. +|..+..-.-|.++|..+...... ..|..... +.|.+.|
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 99999999986 576666556689999999884311 33433333 6666666
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.053 Score=61.51 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=100.5
Q ss_pred CCCEE-EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC-------EEEEEECCCeEEEEeCCCCCCCccCCc
Q psy3053 633 DNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-------RLISGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 633 d~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~-------~L~Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
+.++| .++.....++-.|++.|+.+..+.-|.+ |+-+.+.|+.+ .-+.|-.|..|.-||.+-...... ..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl-~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL-AV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee-ee
Confidence 44444 4455667799999999999999988877 77777777542 123455688899999874321100 00
Q ss_pred ceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q psy3053 705 SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwD 784 (917)
.............|.+-..+ .++|+|+.+|.|++||- .+....+..++.+.+|..|..+.+|++|++.+ +..+.+.+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 01111223344566665555 47899999999999997 55555555558889999999999999988766 44666665
Q ss_pred C
Q psy3053 785 L 785 (917)
Q Consensus 785 l 785 (917)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=5.1 Score=49.52 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=118.9
Q ss_pred cceEEEEEeCCCcEEEEEec-----CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc------cEEEEE
Q psy3053 581 EAITAVAICGEGISVASVGR-----DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD------SCVVIY 649 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D------g~I~Iw 649 (917)
-.+..+.+||||++|+.+.. ...|++-|+.+|..+....... . ..++|++|++.|+.+..+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999998876533 2358888888876432211111 1 458999999877665442 367888
Q ss_pred EeccC--eeeEEeccCCCcee-EEEecCCCCEEEEEEC---CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 650 DVECG--RIVTELAGHEDAIS-CVAWDEKRKRLISGSW---DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 650 dl~tg--~~i~~l~~H~~~Vt-~l~~spd~~~L~Sgs~---DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
++.++ +....+........ .+..+.++++++..+. ++.+.+++....... .......... ....+. +.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~-~~~~~~-~~ 278 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE----PFVFLPRRKD-HEYSLD-HY 278 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC----ceEEEECCCC-CEEEEE-eC
Confidence 88877 33334443333333 2233447777655443 357888885332100 0111111111 112222 22
Q ss_pred CCCEEEEEEC---CCeEEEEECCCCeeeEEecCC-CCCCeEEEEEecCCCEEEEEeCCCeEEEE--ECCCCeEEEEeecC
Q psy3053 724 DNNQLAVGTE---AGELIIWSLENHLMTQQLSDD-INASVNGVLFSEDGCRVLSCGNNCMLNVY--DLTTGMQVCNKVFE 797 (917)
Q Consensus 724 dg~~Lasgs~---dG~I~iwDl~~~~~~~~l~~~-h~~~V~~v~fspdg~~L~s~s~Dg~I~iw--Dl~tg~~i~~~~~~ 797 (917)
.+.+.+.... ...|...++........+... ....+..+.++ .+..+++...+|.-+++ +..++ .+..+...
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~ 356 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD 356 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC
Confidence 2333333222 223444455421112233312 23468888887 33455666667665544 44333 33333322
Q ss_pred --CceEEEEEe--CC-CEEEE-Ee---CCCeEEEEECCCCE
Q psy3053 798 --EKLLCLSWA--GE-EKVIL-GG---ALGMVYLVDLIQVQ 829 (917)
Q Consensus 798 --~~i~~l~~s--~~-~~lv~-gs---~dG~I~vwdl~~~~ 829 (917)
..+..+..+ ++ +.++. .+ .-+.+..+|..+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 222222333 22 23332 22 23788899987764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.8 Score=46.04 Aligned_cols=230 Identities=10% Similarity=0.079 Sum_probs=133.3
Q ss_pred EEEEeCCC-CEEEEEecccE-EEEEEeccCeeeEEeccCCCc--eeEEEecCCCCEEEEEECC-----CeEEEEeCCCCC
Q psy3053 627 SLCILPDN-CTMLVGCWDSC-VVIYDVECGRIVTELAGHEDA--ISCVAWDEKRKRLISGSWD-----CTVRVWNTGASW 697 (917)
Q Consensus 627 sl~~spd~-~~Lasgs~Dg~-I~Iwdl~tg~~i~~l~~H~~~--Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~ 697 (917)
.++++|.. .-++.+-.-|+ ..++|....+...++...++. --.-.|||||.+|...-.| |.|-|||.+.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 45566643 34445544444 567788777665554322211 1123689999999876544 789999987542
Q ss_pred CCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC------------------CCeEEEEECCCCeeeEEecC---CCC
Q psy3053 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE------------------AGELIIWSLENHLMTQQLSD---DIN 756 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------------------dG~I~iwDl~~~~~~~~l~~---~h~ 756 (917)
...-....|.-....+.+.+||+.++.+.. .-++.+.|..+|..+.+..- .+.
T Consensus 152 ------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 152 ------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 122223445566778899999999887642 11344555556655544331 244
Q ss_pred CCeEEEEEecCCCEEEEEeCCCe-----EEEEECCCCeEEEEeecC--------CceEEEEEeC-CCEEEEEeC-CCeEE
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCM-----LNVYDLTTGMQVCNKVFE--------EKLLCLSWAG-EEKVILGGA-LGMVY 821 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~-----I~iwDl~tg~~i~~~~~~--------~~i~~l~~s~-~~~lv~gs~-dG~I~ 821 (917)
..|..++..+||..++.+-..|. -.+=-...|+.+..+..+ .-+-+++.+. ++.+...+- .+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 57888888888877665543321 111111233333333322 2356677763 334444444 45788
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
+||..+|..+.... -..+..+.....-+++.+.+|.+..+.
T Consensus 306 i~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence 99999998776532 122233455666677777888888774
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=5.5 Score=49.10 Aligned_cols=315 Identities=13% Similarity=0.126 Sum_probs=176.9
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEecc--CCcee--eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeee
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLK--TGRQE--RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~--~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i 657 (917)
.|.-.++-.|+.+|.++..||.+.-+.++ +|... ++......|+.--.|+..++.-+.+..|.-..+|.-+ ++.+
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLV 663 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEE
Confidence 45555666678899999999998866554 44332 2223344555555566655544444455555555433 3332
Q ss_pred EEeccCCCceeEE-EecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 658 TELAGHEDAISCV-AWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 658 ~~l~~H~~~Vt~l-~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
.+--. -..+..+ .|+. -...++++. .+.+++--++.-.. .... ..........+++.+....+++.+..
T Consensus 664 ~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk-----l~ir-tvpl~~~prrI~~q~~sl~~~v~s~r 735 (1096)
T KOG1897|consen 664 YSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQK-----LHIR-TVPLGESPRRICYQESSLTFGVLSNR 735 (1096)
T ss_pred Eeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhh-----ccee-eecCCCChhheEecccceEEEEEecc
Confidence 21100 0111111 2222 123455554 44566665543210 0111 12333445556666533333333211
Q ss_pred --------------CeEEEEECCCCeeeEEecCCCC---CCeEEEEEecC-CCEEEEEeC----------CCeEEEEECC
Q psy3053 735 --------------GELIIWSLENHLMTQQLSDDIN---ASVNGVLFSED-GCRVLSCGN----------NCMLNVYDLT 786 (917)
Q Consensus 735 --------------G~I~iwDl~~~~~~~~l~~~h~---~~V~~v~fspd-g~~L~s~s~----------Dg~I~iwDl~ 786 (917)
..++++|-++.+.+...+-... ..+.++.|..| +.++++|.. .|.|.++...
T Consensus 736 ~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 736 IESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred cccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 2367777777666554442222 34555568877 677777752 4778888776
Q ss_pred CC---eEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEE
Q psy3053 787 TG---MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 787 tg---~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~ 861 (917)
.+ +.+......+.+.++..-.+ +++ ++-...|++|++.+.+.++.-..+..++..+ .-.|..+++|.--+++.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~fng-kll-A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEFNG-KLL-AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhhCC-eEE-EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 53 23334445555655544333 444 4456789999999988887777788888777 56899999999888877
Q ss_pred EEECc--CCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 862 IYDVE--CGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 862 Iwdl~--tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+...+ .|.....- .-+..+.+++.+-.+ ...+.+..+|.+.+-..+
T Consensus 894 ll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 894 LLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeecccccEEEEEec
Confidence 66544 33343322 235667777777644 455556677777766554
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.2 Score=55.21 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=122.9
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc--------eeEEEecC----------------CCCEEEEEECCCeEE
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA--------ISCVAWDE----------------KRKRLISGSWDCTVR 689 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~--------Vt~l~~sp----------------d~~~L~Sgs~DgtI~ 689 (917)
+..+..++.++.|.-.|..+|+.+..+...... ...+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777778889999999999888776532211 12233321 335788889999999
Q ss_pred EEeCCCCCCCccCC--cc--eeeecc-CCCceEEEEEeC--CCCEEEEEEC----------CCeEEEEECCCCeeeEEec
Q psy3053 690 VWNTGASWSHMKPS--KS--LVSQLD-LDNRIKCLAISK--DNNQLAVGTE----------AGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 690 vWdl~~~~~~~~~~--~~--~~~~~~-h~~~V~~l~~sp--dg~~Lasgs~----------dG~I~iwDl~~~~~~~~l~ 752 (917)
-.|..++....... .. .....+ ....-..+.-.| .+..+++|+. +|.|+-+|.++|+.+....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99988873211100 00 000000 000000111111 1445666643 6889999999999998876
Q ss_pred CCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEE
Q psy3053 753 DDINASVNGVLFSEDGCRVLSCGNNC-MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 753 ~~h~~~V~~v~fspdg~~L~s~s~Dg-~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~ 830 (917)
...... ... .+.|.....++.+. ...-+|.+++.......... ..+.+... .......+.|.-.|..+|+.
T Consensus 354 ~g~p~~-~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~----pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 354 PGNPDP-TAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT----PDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred cCCCCc-ccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc----ccccCCccccCcccccceEEEEeCCCCce
Confidence 322111 100 11233222222111 23344444443322111100 00000000 11122356788888888888
Q ss_pred EEEEec--CC--------Cc-eEEEee-cCC---EEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 831 LKQVRA--HK--------DA-VLSLHF-DNC---TMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 831 i~~l~~--h~--------~~-V~sis~-dg~---~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
.-.++. |. .+ ...+.. +|+ .++.++.+|.+.+.|-++|+.+...
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 776654 21 11 122332 553 7899999999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.015 Score=49.00 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=42.7
Q ss_pred ccccceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeec
Q psy3053 153 DLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRR 211 (917)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r 211 (917)
...|+++.+..|.+..+.....|+|.||+++|+|.+.........+.|++.+|..|-|.
T Consensus 10 p~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 10 PEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp -TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred CCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 35688888999999888888999999999999999854332334688999999998664
|
It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.37 Score=55.82 Aligned_cols=184 Identities=13% Similarity=0.117 Sum_probs=107.3
Q ss_pred cceEEEEEeCCCCEE-EEEe--cccEEEEEEeccCeeeEEeccCCCceeEEEecCC----CCEEEEEECCCeEEEEeCCC
Q psy3053 623 MTLSSLCILPDNCTM-LVGC--WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 623 ~~V~sl~~spd~~~L-asgs--~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd----~~~L~Sgs~DgtI~vWdl~~ 695 (917)
.++..++|. ||+.+ .+.- .+|.+++=| .+.+ |.-..|..++|.|- ...|++......|.||.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 467788886 44443 3321 123222211 1222 33346899999884 44667777889999999864
Q ss_pred CCCCccCCcceee---eccCC--CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE
Q psy3053 696 SWSHMKPSKSLVS---QLDLD--NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR 770 (917)
Q Consensus 696 ~~~~~~~~~~~~~---~~~h~--~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~ 770 (917)
...... +.+.. ..... --...+.|+|....|++-+....-.+++++.........-...+.|.|.+|.+||+.
T Consensus 92 s~~e~~--K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERN--KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred Cccccc--cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence 321111 11111 11111 123567899999988887766555566665433222222246789999999999999
Q ss_pred EEEEeCC-CeEEEEECCCCeE-----EEEeecCCceEEEEEeCCCEEEEEeC
Q psy3053 771 VLSCGNN-CMLNVYDLTTGMQ-----VCNKVFEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 771 L~s~s~D-g~I~iwDl~tg~~-----i~~~~~~~~i~~l~~s~~~~lv~gs~ 816 (917)
|+++-.. =.-++||-..... -..+..++.|.++....+..++++++
T Consensus 170 LVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAvaTE 221 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVATE 221 (671)
T ss_pred EEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEEec
Confidence 8876443 3467888543221 12345567777777777666666543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.2 Score=47.65 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=110.8
Q ss_pred eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccC-CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q psy3053 619 VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH-EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697 (917)
Q Consensus 619 ~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H-~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~ 697 (917)
.+-...++++.|+|+.+.|++......-.|+=...|..+.++.-. -...-++.+..++++.++--+++.+.+..+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344455999999999999999888888778877789888876521 2234567888888888888889999998877653
Q ss_pred CCccCCcceee--eccC-CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe--cCCC-------CCCeEEEEEe
Q psy3053 698 SHMKPSKSLVS--QLDL-DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL--SDDI-------NASVNGVLFS 765 (917)
Q Consensus 698 ~~~~~~~~~~~--~~~h-~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l--~~~h-------~~~V~~v~fs 765 (917)
........... ...+ ......++|+|....+..+-+-.-+.|+.+......-.. ...+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22221111111 1122 556789999999998988888888888776533211111 0011 1346677787
Q ss_pred c-CCCEEEEEeCCCeEEEEECC
Q psy3053 766 E-DGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 766 p-dg~~L~s~s~Dg~I~iwDl~ 786 (917)
+ .+..++-+.+++.+.-.|..
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC
Confidence 6 45566666667777667654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.86 E-value=2.3 Score=47.58 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=40.1
Q ss_pred cCCEEEEEeCCCeEEEEECcCCeEEE---E-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3053 847 DNCTMLVGCWDSCVVIYDVECGRIVT---E-LAGHEDAISCVAWDEKRKRLISGNLVGAPK 903 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~tg~~l~---~-l~~h~~~V~slafSpdg~~LaSgs~DG~V~ 903 (917)
.|.++++.-..+.|....+..+..+. . +.....++.++++.|||.+.++.+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 56677777667788888887554322 2 233445899999999999999988888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.5 Score=46.99 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=113.6
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
.+-...|.++.|+|+.+.|++......-.||=..+|+.++++.... ...-.+.+..++.++++--.++.+.++.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3444559999999999999999988888888888899988876532 223467788888888887788999998887653
Q ss_pred eeEE-------ec--cC-CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcce---eeeccCCCceEEEEEe
Q psy3053 656 IVTE-------LA--GH-EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL---VSQLDLDNRIKCLAIS 722 (917)
Q Consensus 656 ~i~~-------l~--~H-~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~---~~~~~h~~~V~~l~~s 722 (917)
.+.. +. .+ ....-.++|.|.+..|+.+-.-.-+.|+.+............. ....-.-..|.++.++
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2211 11 12 5667889999999999888877777777765432111000000 0000012346778888
Q ss_pred CC-CCEEEEEECCCeEEEEECCCC
Q psy3053 723 KD-NNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 723 pd-g~~Lasgs~dG~I~iwDl~~~ 745 (917)
+. +.+++-+.+++.+.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 74 566677777788887877644
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=3.9 Score=43.76 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=91.3
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeEEEEeecCCceE--EEEEeCCCEEEEEeCCCeEE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC--MLNVYDLTTGMQVCNKVFEEKLL--CLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg--~I~iwDl~tg~~i~~~~~~~~i~--~l~~s~~~~lv~gs~dG~I~ 821 (917)
+.+.++......-...+.|..+|.++-+++.-| .|+.+|+.+|+.......+.... .++..++..+...-.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 345555534445567788888888888888766 69999999999888877776543 45566775666777889999
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+||..+.+.+.++.- .+.=..+..|++.|+.+.....++++|..+.+....+.
T Consensus 114 ~yd~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 999999999988864 34556677889989888888899999988776665553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.2 Score=45.88 Aligned_cols=154 Identities=18% Similarity=0.102 Sum_probs=92.7
Q ss_pred ceEEEEEeCCCcEEEEEe-cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE-eccCeeeE-
Q psy3053 582 AITAVAICGEGISVASVG-RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD-VECGRIVT- 658 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd-l~tg~~i~- 658 (917)
.+.+.++|++|+.++... .++.-.+|-...+....... ....+..-.|++++...+....+...+++. ..++....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688999999999887766 23333444433333333322 233677788999987777766666666664 33333221
Q ss_pred Eecc--CCCceeEEEecCCCCEEEEEE---CCCeEEEEeCCCCCCC--ccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 659 ELAG--HEDAISCVAWDEKRKRLISGS---WDCTVRVWNTGASWSH--MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 659 ~l~~--H~~~Vt~l~~spd~~~L~Sgs---~DgtI~vWdl~~~~~~--~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
.+.. -.+.|+.+.++|||..++... .++.|.+=-+...... ................++.++|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 1211 112899999999999887665 3466766655433211 11111111122345689999999999888777
Q ss_pred ECCCe
Q psy3053 732 TEAGE 736 (917)
Q Consensus 732 s~dG~ 736 (917)
...+.
T Consensus 184 ~~~~~ 188 (253)
T PF10647_consen 184 RSAGG 188 (253)
T ss_pred CCCCC
Confidence 65543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.5 Score=52.56 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=115.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCC-------eEEEEEe----------------cCCCEEEEEeCCCeEE
Q psy3053 725 NNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS-------VNGVLFS----------------EDGCRVLSCGNNCMLN 781 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~-------V~~v~fs----------------pdg~~L~s~s~Dg~I~ 781 (917)
+..+..++.++.|.-.|..+|+.+.++....... ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4566677778888888888888887765221110 1223222 1345788888999999
Q ss_pred EEECCCCeEEEEeecCCceE-------------EEEEe---CCCEEEEEeC----------CCeEEEEECCCCEEEEEEe
Q psy3053 782 VYDLTTGMQVCNKVFEEKLL-------------CLSWA---GEEKVILGGA----------LGMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i~-------------~l~~s---~~~~lv~gs~----------dG~I~vwdl~~~~~i~~l~ 835 (917)
-.|.++|+....+..++.+. ...-. -++.+++|+. +|.|+-+|..+|+.+-.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999887655443321 01111 1457777753 6899999999999887764
Q ss_pred cC---------CC--------c---eEEEeecCCEEEEEe------------------CCCeEEEEECcCCeEEEEecCC
Q psy3053 836 AH---------KD--------A---VLSLHFDNCTMLVGC------------------WDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 836 ~h---------~~--------~---V~sis~dg~~Lasgs------------------~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.- .+ . ..++.+....++.+. ..++|.-.|.++|+....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 21 00 1 111222223333321 2356777888999988777542
Q ss_pred CCCE---------EEEEEcC-CCC---EEEEEeCCCcEEEEecCc-ceEE
Q psy3053 878 EDAI---------SCVAWDE-KRK---RLISGNLVGAPKLYATEF-YLLY 913 (917)
Q Consensus 878 ~~~V---------~slafSp-dg~---~LaSgs~DG~V~IWdl~~-~ll~ 913 (917)
...+ .-+.+.. +|+ .++.++.+|.+.+.|-++ ..+.
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 1111 1122322 553 788999999999999874 4544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=4.3 Score=43.54 Aligned_cols=271 Identities=11% Similarity=0.038 Sum_probs=144.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe---eeE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR---IVT 658 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~---~i~ 658 (917)
-+..+.++. +++..+..+.-++|.|+.+......+..-...-..-.|.-.|++..++.+|.-+.+.|+.+.. ...
T Consensus 88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence 344555554 466677778889999997765443332211111223345568888888877778888887643 333
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
...........++.| |++-..+.+|+-+.+-|+... ....+.........+.++..+++..+++...+ -+.
T Consensus 166 rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp-----~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl 236 (370)
T COG5276 166 RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP-----HSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL 236 (370)
T ss_pred eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC-----CCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence 444444444566665 477777889999999999765 12233333444457888888877666666543 367
Q ss_pred EEECCCCeeeEEecCCCCCCeEEE-EEecCCCEEEEEeCCCeEEEEECCCCeE---EEEeecCC-ceEEEEEeCCCEEEE
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGV-LFSEDGCRVLSCGNNCMLNVYDLTTGMQ---VCNKVFEE-KLLCLSWAGEEKVIL 813 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v-~fspdg~~L~s~s~Dg~I~iwDl~tg~~---i~~~~~~~-~i~~l~~s~~~~lv~ 813 (917)
+-|..+.+....+-.-....+.++ .+.-.+++...+..+.-+.+-|+.+... .......+ ....+...+. .+..
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~-y~yi 315 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGN-YNYI 315 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecC-eeEe
Confidence 777776654444331122222222 2333455666666666666666654311 11111222 2223333332 2222
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCC--CceEEEeecCCEEEEEeCCCeEEEEEC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHK--DAVLSLHFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~--~~V~sis~dg~~Lasgs~DG~I~Iwdl 865 (917)
+..+ ...+.+....+......+.. ..-.+++.+.+.+.+...+|.+.+|+.
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 2222 23333333222111111111 111233556667888888888888875
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.53 E-value=6.2 Score=45.34 Aligned_cols=75 Identities=19% Similarity=0.095 Sum_probs=50.7
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE-EEE-cCC----------------CC-EEEEEeCCCcEE
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC-VAW-DEK----------------RK-RLISGNLVGAPK 903 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s-laf-Spd----------------g~-~LaSgs~DG~V~ 903 (917)
+++|++++.|+...=|.|.++|+.++..++.++|-.+.=.+ +.. .+. .. .++-+-.-|.|.
T Consensus 314 ~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lE 393 (415)
T PF14655_consen 314 CLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILE 393 (415)
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEE
Confidence 33788888888777799999999999988888776543111 111 111 11 233467789999
Q ss_pred EEecC-cceEEEEeC
Q psy3053 904 LYATE-FYLLYVLTV 917 (917)
Q Consensus 904 IWdl~-~~ll~~Ltv 917 (917)
||.+. +..+..+++
T Consensus 394 vW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 394 VWSMRQGPRVAAFNV 408 (415)
T ss_pred EEecCCCCEEEEEEe
Confidence 99996 557776653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.6 Score=45.21 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=88.0
Q ss_pred ceEEEEEeCCCCEEEEEe---cccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEe-CCCCCC
Q psy3053 624 TLSSLCILPDNCTMLVGC---WDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-TGASWS 698 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs---~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd-l~~~~~ 698 (917)
.+.+.+++++++.+|... ....++++.. +..... +.+ ..++.-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 678899999999887665 2334555543 333222 233 3788889999977776666666777774 222210
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEE---CCCeEEEEECC---CC--eee---EEecCCCCCCeEEEEEecC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT---EAGELIIWSLE---NH--LMT---QQLSDDINASVNGVLFSED 767 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs---~dG~I~iwDl~---~~--~~~---~~l~~~h~~~V~~v~fspd 767 (917)
. ............|+.+.+||||..++... .++.|.+--+. .+ ..+ ..+.......+.++.|.++
T Consensus 101 ~----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 101 E----PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred e----eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 0 01111111122899999999999887765 34667665443 22 011 1111133568899999999
Q ss_pred CCEEEEEeCCC
Q psy3053 768 GCRVLSCGNNC 778 (917)
Q Consensus 768 g~~L~s~s~Dg 778 (917)
+.+++.+...+
T Consensus 177 ~~L~V~~~~~~ 187 (253)
T PF10647_consen 177 STLVVLGRSAG 187 (253)
T ss_pred CEEEEEeCCCC
Confidence 98777665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.7 Score=50.29 Aligned_cols=315 Identities=15% Similarity=0.089 Sum_probs=159.3
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
..+|.++.+..+|. +..|+.|| +..||..+++..+...... .+|..+..+-.+ .+.+|+++| +++.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 45788888888884 56677777 4567777776665544433 455555444344 567777776 6666665422211
Q ss_pred Eecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 659 ELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 659 ~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
.... ..+.|..+.-..+| .+..|+..|-.+.- .... .. ..+.......-+.|.++..+.+|. +-+++.+|.+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~-l~rq--~L--q~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv 312 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTR-LPRQ--GL--QIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIV 312 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeEe-cCCC--Cc--cccccccCCccccccceeeccCCC-EeeeccCceE
Confidence 1111 22334333333333 44555555533221 1111 00 011111122234566777776766 5566666665
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEee--cCCceEEEEEeCCCEEEE
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKV--FEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~--~~~~i~~l~~s~~~~lv~ 813 (917)
.+-+.. ......+.......+..++.+| .+..+-.....|.+.+-+-.+|..+.... -+..|+..+.+.++.+-.
T Consensus 313 ~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWl 391 (671)
T COG3292 313 RYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWL 391 (671)
T ss_pred EEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEE
Confidence 544322 1111112211111222222222 12222222233344455555555554422 123456666666778888
Q ss_pred EeCCCeEEEEECCC-CEEEEEEec-CCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec--CC---CCCEEEE
Q psy3053 814 GGALGMVYLVDLIQ-VQLLKQVRA-HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA--GH---EDAISCV 884 (917)
Q Consensus 814 gs~dG~I~vwdl~~-~~~i~~l~~-h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~--~h---~~~V~sl 884 (917)
|+...-+..|+..+ +.......+ ..+.|.++ .++++ +..|+.+|-++. +.+.++....+. .| .+.|..+
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~l 469 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQL 469 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhh
Confidence 88887777777776 444444433 35677777 55666 888888885443 334444333322 12 2447778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 885 AWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 885 afSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
...|+|+.-+..+ +| |..|+.+.+
T Consensus 470 g~~~~g~Lw~a~g-~g-va~~~sq~~ 493 (671)
T COG3292 470 GLGPDGRLWLAAG-SG-VAAWESQRR 493 (671)
T ss_pred ccCCCCceEEEec-ce-eeeeccccc
Confidence 8899987544332 22 566666544
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=10 Score=47.01 Aligned_cols=237 Identities=7% Similarity=-0.071 Sum_probs=119.2
Q ss_pred ceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC------
Q psy3053 666 AISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA------ 734 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d------ 734 (917)
.+..+.++|++++|+.+... ..|.+-|+.++. .+....... -..++|.+|++.|+.+..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-------~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-------WYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-------CCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCC
Confidence 46678889999988765322 368888887651 111111111 1458999999877665442
Q ss_pred CeEEEEECCCC--eeeEEecCCCCCCeE-EEEEecCCCEEEEEeC---CCeEEEEEC--CCCeEEEEeecCCce-EEEEE
Q psy3053 735 GELIIWSLENH--LMTQQLSDDINASVN-GVLFSEDGCRVLSCGN---NCMLNVYDL--TTGMQVCNKVFEEKL-LCLSW 805 (917)
Q Consensus 735 G~I~iwDl~~~--~~~~~l~~~h~~~V~-~v~fspdg~~L~s~s~---Dg~I~iwDl--~tg~~i~~~~~~~~i-~~l~~ 805 (917)
..|+.+++.++ +....+. ....... .+..+.++++++..+. ++.+.+++. .++............ ..+.
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CEEEEEECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 36888888887 3333333 2222233 3334448887665443 356888884 234332223332222 2222
Q ss_pred eCCCEEEEEeCC----CeEEEEECCCCEEEEEEecC-C-CceEEEeecCCE-EEEEeCCCeEEEEECcC-CeEEEEec-C
Q psy3053 806 AGEEKVILGGAL----GMVYLVDLIQVQLLKQVRAH-K-DAVLSLHFDNCT-MLVGCWDSCVVIYDVEC-GRIVTELA-G 876 (917)
Q Consensus 806 s~~~~lv~gs~d----G~I~vwdl~~~~~i~~l~~h-~-~~V~sis~dg~~-Lasgs~DG~I~Iwdl~t-g~~l~~l~-~ 876 (917)
...+.+...+.. ..|...++.+......+..+ . ..+..+...++. +++...+|.-+++-+.. +..+..+. .
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 222344433332 24544555421222333334 2 356667555554 55556677655554332 22334433 2
Q ss_pred CCCCEEEEEEc--CCCC-EEEEEe---CCCcEEEEecCcceEE
Q psy3053 877 HEDAISCVAWD--EKRK-RLISGN---LVGAPKLYATEFYLLY 913 (917)
Q Consensus 877 h~~~V~slafS--pdg~-~LaSgs---~DG~V~IWdl~~~ll~ 913 (917)
....+..+.++ +++. .+++.+ .-+.+..+|..+....
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 22233434444 3433 444433 3467888887654433
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.04 Score=56.49 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=72.3
Q ss_pred CcEEEEEecCCceEEEeccC-CceeeeeeccccceEEEE-EeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-Ccee
Q psy3053 592 GISVASVGRDAMLKIHSLKT-GRQERSAVLSSMTLSSLC-ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAIS 668 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t-~~~~~~~~~~~~~V~sl~-~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt 668 (917)
+..++.|+.+|.|.+|++.. |............+.++. -..++.+..++++||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688899999999998762 222222222222333322 22355688899999999999999999888888888 6666
Q ss_pred EEEecCCCCEEEEE--ECCCeEEEEeCCC
Q psy3053 669 CVAWDEKRKRLISG--SWDCTVRVWNTGA 695 (917)
Q Consensus 669 ~l~~spd~~~L~Sg--s~DgtI~vWdl~~ 695 (917)
....+..+..++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666777777 7788888888754
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.4 Score=45.54 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.9
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
++.-+|.+.++.-..|+|...|..+|+.+.+++-....|+++||--
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 3345777777777788888899999999888887788899999864
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.31 E-value=7.3 Score=44.82 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=141.8
Q ss_pred CCCEEEEEecccEEEEEEeccCeee----EEeccCCCceeEEEecC-----CCCEEEEEECCCeEEEEeCCCCCCCcc--
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIV----TELAGHEDAISCVAWDE-----KRKRLISGSWDCTVRVWNTGASWSHMK-- 701 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i----~~l~~H~~~Vt~l~~sp-----d~~~L~Sgs~DgtI~vWdl~~~~~~~~-- 701 (917)
+...|++|+..|.++||+...+... ..-..-..+|-.+..-. +...||. =.-..+.+|.+........
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3468999999999999998653311 11112346777776532 2223333 4566777887733221110
Q ss_pred CCcceeeeccC--CCceEEEEEeC----C-CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 702 PSKSLVSQLDL--DNRIKCLAISK----D-NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 702 ~~~~~~~~~~h--~~~V~~l~~sp----d-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
....+.....| ......+++-| . ...+++-+.||.+.+++-+.......+. . ---...+++.+....++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-D-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-C-CCCCcCeEEeecCCEEEEe
Confidence 11122222222 22333444433 2 3678889999999999987655444444 1 2333457788888889999
Q ss_pred eCCCeEEEEECCC--------------------Ce---EEEEeecCCceEEEEEeC---CCEEEEEeCCCeEEEEECCCC
Q psy3053 775 GNNCMLNVYDLTT--------------------GM---QVCNKVFEEKLLCLSWAG---EEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 775 s~Dg~I~iwDl~t--------------------g~---~i~~~~~~~~i~~l~~s~---~~~lv~gs~dG~I~vwdl~~~ 828 (917)
+.+..+..|.... ++ +..++...+.+..+..-. ....+..-....+.+.+. +|
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G 271 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NG 271 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CC
Confidence 8888888876421 11 112233344444443321 111222222334444444 33
Q ss_pred EEEEEEecCCCceEEE----e---ecC---CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE--EEEEEcCCCCEEEEE
Q psy3053 829 QLLKQVRAHKDAVLSL----H---FDN---CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI--SCVAWDEKRKRLISG 896 (917)
Q Consensus 829 ~~i~~l~~h~~~V~si----s---~dg---~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V--~slafSpdg~~LaSg 896 (917)
......+ ......|+ . .++ ..++.++.++++.||.= .+++...+....+| .-..+..-...|++-
T Consensus 272 ~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 272 SLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSL 348 (418)
T ss_pred eEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEE
Confidence 3322222 22222333 1 122 24888999999999963 34444433333443 222233335588888
Q ss_pred eCCCcEEEEec
Q psy3053 897 NLVGAPKLYAT 907 (917)
Q Consensus 897 s~DG~V~IWdl 907 (917)
+.+|.+.+-=+
T Consensus 349 s~~G~L~v~YL 359 (418)
T PF14727_consen 349 SDEGQLSVSYL 359 (418)
T ss_pred cCCCcEEEEEe
Confidence 88998877543
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=57.87 Aligned_cols=135 Identities=20% Similarity=0.213 Sum_probs=94.2
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC--------EEEEEeCCCeEEEEECCCCE--EEEEEecCC---
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE--------KVILGGALGMVYLVDLIQVQ--LLKQVRAHK--- 838 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~--------~lv~gs~dG~I~vwdl~~~~--~i~~l~~h~--- 838 (917)
.++.....++-.|++.|+.+........|.-+.+.|+. .-++|-++..|.-||.+-.. .+...++|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 34445567888899999999888887777666666542 34678888999999987322 233333332
Q ss_pred -CceEEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 839 -DAVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 839 -~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
..-.|. .-...+|++||.+|.|++||--..+....+++-..+|..+..+.+|++|+..+.. .+.+-++
T Consensus 430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 223444 3466789999999999999973333344567888999999999999998876543 4444444
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.7 Score=44.97 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=85.1
Q ss_pred cceEEEEEeCCCCEEEEEec----------ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEE-EEEECCCeEEEE
Q psy3053 623 MTLSSLCILPDNCTMLVGCW----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVW 691 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~----------Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vW 691 (917)
.....-..+|+|++. .|.. .|.++.|-.. ..+..+...-+--+.++|+.+.+.+ ++-|.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 345556678999884 3332 2334444322 1122222222334578888766654 456677788889
Q ss_pred eCCCCCCCccCCcceeeecc----CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec
Q psy3053 692 NTGASWSHMKPSKSLVSQLD----LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE 766 (917)
Q Consensus 692 dl~~~~~~~~~~~~~~~~~~----h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp 766 (917)
|.+...........+..... ..-..-.+++..+|++.++.-..|+|...|..+|+.+.++. -....|++++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEEEEecC
Confidence 84433222222222221111 11223456667789999999999999999999999999998 4578899999964
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=1 Score=54.05 Aligned_cols=191 Identities=14% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCCcEEEEEecCC------ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc-----cEEEEEEeccCeeeE
Q psy3053 590 GEGISVASVGRDA------MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD-----SCVVIYDVECGRIVT 658 (917)
Q Consensus 590 pdg~~Lasgs~Dg------~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D-----g~I~Iwdl~tg~~i~ 658 (917)
.++..++.||.++ .+..||..+++-..............+..-++...+.||.+ ..+..||..+++-..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 4455666666542 46677776654422111111111111223367777888765 357778877654322
Q ss_pred E--eccCCCceeEEEecCCCCEEEEEECC------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 659 E--LAGHEDAISCVAWDEKRKRLISGSWD------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 659 ~--l~~H~~~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
. +...... .+++. -+++..+.||.+ ..+..||..+.. ....... .....-.++ ...++.+.+.
T Consensus 373 ~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~----p~~r~~~~~-~~~~~~iyv~ 443 (534)
T PHA03098 373 EPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPL----PISHYGGCA-IYHDGKIYVI 443 (534)
T ss_pred CCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCC----CccccCceE-EEECCEEEEE
Confidence 1 1111111 12222 255666777632 357888876652 1100000 000001122 2235667777
Q ss_pred EECCC--------eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeE
Q psy3053 731 GTEAG--------ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQ 790 (917)
Q Consensus 731 gs~dG--------~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~ 790 (917)
|+.++ .+.+||..+++-...-.......-.+++ .-+++.++.||.+ +.+.+||..+++-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 76432 3788888776433221101111111111 2256666666543 3566777665543
|
|
| >smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.08 Score=43.26 Aligned_cols=55 Identities=24% Similarity=0.131 Sum_probs=42.5
Q ss_pred ccceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeee
Q psy3053 155 YEKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIR 210 (917)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~ 210 (917)
.|+++.+..|... ......|++.||+++|+|.....-.....+.|++.+|..|-|
T Consensus 5 ~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 5 EEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEK 59 (61)
T ss_pred CcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence 5778888888887 556789999999999999873321122278899999999866
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.1 Score=46.34 Aligned_cols=223 Identities=14% Similarity=0.120 Sum_probs=103.8
Q ss_pred CCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceee----eccCCCceEEEEEeCCCCEEEEEE--C----CCeEEEEECC
Q psy3053 675 KRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVS----QLDLDNRIKCLAISKDNNQLAVGT--E----AGELIIWSLE 743 (917)
Q Consensus 675 d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~----~~~h~~~V~~l~~spdg~~Lasgs--~----dG~I~iwDl~ 743 (917)
+.++|+..+ ..+.|.|.|+.+.....+..+.+.. ....-+....+-.-|+|++++++- . -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 446777766 6789999999865321111111100 000001223334457888888752 2 2568888988
Q ss_pred CCeeeEEecCCC--CCCeEEEEEecCCCEEEEEeC--------------------CCeEEEEECCCCeEEEEeecCCc--
Q psy3053 744 NHLMTQQLSDDI--NASVNGVLFSEDGCRVLSCGN--------------------NCMLNVYDLTTGMQVCNKVFEEK-- 799 (917)
Q Consensus 744 ~~~~~~~l~~~h--~~~V~~v~fspdg~~L~s~s~--------------------Dg~I~iwDl~tg~~i~~~~~~~~-- 799 (917)
+.+......... ..--..+-+.|..+.++++.. ..++.+||+.+.+.++.+.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 877777665322 234456778888888887642 35799999999999999888642
Q ss_pred -eEEEEEe--CCC-E-EEEEeCCCeEEEEEC-CCCE----EEEEEec-----C------------CCceEEE--eecCCE
Q psy3053 800 -LLCLSWA--GEE-K-VILGGALGMVYLVDL-IQVQ----LLKQVRA-----H------------KDAVLSL--HFDNCT 850 (917)
Q Consensus 800 -i~~l~~s--~~~-~-lv~gs~dG~I~vwdl-~~~~----~i~~l~~-----h------------~~~V~si--s~dg~~ 850 (917)
...+.|. |+. . ++.+.-.++|..|-. ..++ .+..+.. - ..-|+.| |.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 4455554 332 2 333344555655544 4443 2222221 1 1335665 779999
Q ss_pred EEEEe-CCCeEEEEECcCC---eEEEEec-C-------C--------CCCEEEEEEcCCCCEEEEEe
Q psy3053 851 MLVGC-WDSCVVIYDVECG---RIVTELA-G-------H--------EDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 851 Lasgs-~DG~I~Iwdl~tg---~~l~~l~-~-------h--------~~~V~slafSpdg~~LaSgs 897 (917)
|..++ .+|.|+.||+... +++.++. + | .+...-+..|-||++|...+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 87776 5899999999753 3343321 1 0 12346688899999888654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=7.4 Score=41.62 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=123.5
Q ss_pred eEEEecCCCC-EEEEEECCCe-EEEEeCCCCCCCc-cCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEE
Q psy3053 668 SCVAWDEKRK-RLISGSWDCT-VRVWNTGASWSHM-KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELII 739 (917)
Q Consensus 668 t~l~~spd~~-~L~Sgs~Dgt-I~vWdl~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~i 739 (917)
..++++|... -++.+-.-|+ ..++|........ .....-....+| -.|||||.+|.+.-.| |.|-+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEE
Confidence 3466666433 3444444444 4567776652111 011111223333 3689999998876443 78999
Q ss_pred EECCCC-eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC------------------CeEEEEECCCCeEEEEeecC---
Q psy3053 740 WSLENH-LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN------------------CMLNVYDLTTGMQVCNKVFE--- 797 (917)
Q Consensus 740 wDl~~~-~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D------------------g~I~iwDl~tg~~i~~~~~~--- 797 (917)
||.+.+ +.+.++. .|.-....+.+.+||+.++.+... -++.+.|..+|..+.....+
T Consensus 145 Yd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 145 YDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred Eecccccceecccc-cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 999854 3344444 677778889999999999877531 13555666667666554444
Q ss_pred --CceEEEEEeCCCEEEEEeCC-C-----eEEEEECCCCEEEEEEec-------CCCceEEEee--cCCEEEEEe-CCCe
Q psy3053 798 --EKLLCLSWAGEEKVILGGAL-G-----MVYLVDLIQVQLLKQVRA-------HKDAVLSLHF--DNCTMLVGC-WDSC 859 (917)
Q Consensus 798 --~~i~~l~~s~~~~lv~gs~d-G-----~I~vwdl~~~~~i~~l~~-------h~~~V~sis~--dg~~Lasgs-~DG~ 859 (917)
-.+..++..+++.+++|+.- | --.+=-...++.+.-+.. -...|-++.. +..+++..+ ..+.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 34677777888888877642 1 011111122232222211 1123444432 234444444 4556
Q ss_pred EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3053 860 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IW 905 (917)
..+||..+|..+..-.-- ....++ +.+.-++..+.+|.+..+
T Consensus 304 ~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 304 AVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCceEEec
Confidence 789999999987654311 112222 223334555566666654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.1 Score=53.62 Aligned_cols=172 Identities=10% Similarity=0.004 Sum_probs=87.2
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecC--CceEEEEEeCC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFE--EKLLCLSWAGE 808 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~--~~i~~l~~s~~ 808 (917)
.+..||..+.+-.. +...........+..-+++..+.||.+ ..+..||..+++-......+ ..-.+++..++
T Consensus 312 ~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 312 SVVSYDTKTKSWNK-VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN 390 (534)
T ss_pred cEEEEeCCCCeeeE-CCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECC
Confidence 46677777655422 221111111112223367777777765 34778888776543322221 11223333445
Q ss_pred CEEEEEeCC------CeEEEEECCCCEEEEE--EecCCCceEEEeecCCEEEEEeCCC--------eEEEEECcCCeEEE
Q psy3053 809 EKVILGGAL------GMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTMLVGCWDS--------CVVIYDVECGRIVT 872 (917)
Q Consensus 809 ~~lv~gs~d------G~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~Lasgs~DG--------~I~Iwdl~tg~~l~ 872 (917)
..++.|+.+ ..+..||..+.+-... +........++..++...+.||.++ .+.+||..+++...
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 456666632 4688899877654321 1111112233355777777776432 38888988776543
Q ss_pred Ee--cCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q psy3053 873 EL--AGHEDAISCVAWDEKRKRLISGNLV-----GAPKLYATEFY 910 (917)
Q Consensus 873 ~l--~~h~~~V~slafSpdg~~LaSgs~D-----G~V~IWdl~~~ 910 (917)
.- .........+. .+++.++.||.+ ..|.++|.+..
T Consensus 471 ~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 471 LSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 21 11111112222 267777777754 46778877653
|
|
| >PF14470 bPH_3: Bacterial PH domain | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.59 Score=41.77 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=64.9
Q ss_pred ccceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEE
Q psy3053 155 YEKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLY 234 (917)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~ 234 (917)
.|+|.+.+.|.+-......+|.+.+|+++|+|.-...........+++++|..|-...-++. ..+.|-+.++ .--+
T Consensus 4 ~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~-~~i~i~~~~~---~~~i 79 (96)
T PF14470_consen 4 DEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILG-GKITIETNGE---KIKI 79 (96)
T ss_pred CCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccc-cEEEEEECCE---EEEE
Confidence 48888888887665566789999999999999744323345678899999999988865554 4488888443 2233
Q ss_pred EecCChhhHHHHHHHHh
Q psy3053 235 LTLKTQGARDTLYNALL 251 (917)
Q Consensus 235 ~~f~~~~~~~~~~~~~~ 251 (917)
-.+ ...+-+.+++.+.
T Consensus 80 ~~i-~k~~~~~~~~~i~ 95 (96)
T PF14470_consen 80 DNI-QKGDVKEFYEYIK 95 (96)
T ss_pred EEc-CHHHHHHHHHHHh
Confidence 334 4455677777764
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=11 Score=42.86 Aligned_cols=199 Identities=17% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccc--cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-Cc
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSS--MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DA 666 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~--~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~ 666 (917)
-+| .++.+..+|.|.-.|.+++..+.+..... ..+.+-....+|+ +..++.+|.++.+|..+|+.+....... -.
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 344 45555788888888888887664433321 2222222333554 8888999999999998899888776555 11
Q ss_pred eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcce-eeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECC
Q psy3053 667 ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL-VSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLE 743 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~-~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~ 743 (917)
+..-....+ ..+..++.++.+...|..++.......... .........+ .....+..+.. ++.+.-.|..
T Consensus 145 ~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~------~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 145 YASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA------IASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred EecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce------eecceEEEecCCCcceEEEEEcc
Confidence 111111112 233444456777777666552211100000 1111111111 12334555555 6678888888
Q ss_pred CCeeeEEecCCCCCC---e--E-EEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 744 NHLMTQQLSDDINAS---V--N-GVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~---V--~-~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
+|.........+... + . .+...+ .+.-+..++.++.+...|..+|+.+......
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 887776642111111 1 0 110000 1123356667788888999999988777664
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.093 Score=40.47 Aligned_cols=36 Identities=17% Similarity=0.420 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEE
Q psy3053 878 EDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLY 913 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~ 913 (917)
...|..++|+|....||.|+.||.|.++.++++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence 457999999999999999999999999999877653
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.5 Score=44.68 Aligned_cols=171 Identities=16% Similarity=0.115 Sum_probs=108.9
Q ss_pred CCCEEEEEECC--CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCce
Q psy3053 724 DNNQLAVGTEA--GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800 (917)
Q Consensus 724 dg~~Lasgs~d--G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i 800 (917)
+|.++.+.+.- ..|++||+.+++.+....-. ...+..=-...-|..+ +..-.+|.-..+|..+-+.+..+..++.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 34555554433 46999999999877665422 1111111111112222 23345788889999998888888888888
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe--cCCCceEEE---ee-cCCEEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR--AHKDAVLSL---HF-DNCTMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~--~h~~~V~si---s~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
..++.++. .++.++....++.-|..+.....++. ....+|..+ .+ +|...|-.-.+..|..-+.++|+.+..+
T Consensus 134 WgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 88888777 57777777888888887766554443 233444444 22 6766666666666777777788776654
Q ss_pred c------------CCCCCEEEEEEcCCCC-EEEEE
Q psy3053 875 A------------GHEDAISCVAWDEKRK-RLISG 896 (917)
Q Consensus 875 ~------------~h~~~V~slafSpdg~-~LaSg 896 (917)
. .|.+..+.+++.|++. +++||
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2 2445678999999884 55554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.83 E-value=15 Score=41.82 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=75.9
Q ss_pred CceeEEEecCCCCEEEEEE-----------CCC-eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 665 DAISCVAWDEKRKRLISGS-----------WDC-TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs-----------~Dg-tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.....|+|.++|+.+++-. ..+ .|.+++-..+..... ........-.....+++.++| +++ ++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---~~~vfa~~l~~p~Gi~~~~~G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---KSNVFAEELSMVTGLAVAVGG-VYV-AT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---eeEEeecCCCCccceeEecCC-EEE-eC
Confidence 3456788888888776643 223 676665433211111 111122223356789999888 444 44
Q ss_pred CCCeEEEE-ECCCC-----e--ee-EEecCC---CCCCeEEEEEecCCCEEEEEeCC-------------------CeEE
Q psy3053 733 EAGELIIW-SLENH-----L--MT-QQLSDD---INASVNGVLFSEDGCRVLSCGNN-------------------CMLN 781 (917)
Q Consensus 733 ~dG~I~iw-Dl~~~-----~--~~-~~l~~~---h~~~V~~v~fspdg~~L~s~s~D-------------------g~I~ 781 (917)
.. .|..+ |.... + .+ ..+... +......++|.|||.+.++.+.. |.+.
T Consensus 89 ~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 44 34444 54321 1 11 122211 23457789999999877655521 3455
Q ss_pred EEECCCCeEEEEeec-CCceEEEEEeCCCEEEEEeC
Q psy3053 782 VYDLTTGMQVCNKVF-EEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 782 iwDl~tg~~i~~~~~-~~~i~~l~~s~~~~lv~gs~ 816 (917)
-++..+++.. .... ......++|++++.++++..
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 5555444322 2222 22346788888777766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.50 E-value=14 Score=40.61 Aligned_cols=225 Identities=13% Similarity=0.166 Sum_probs=107.9
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecc---ccceEEEEEeCCCCEEEEEecccEEEEEEecc-Cee-e
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS---SMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRI-V 657 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~---~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~-i 657 (917)
..+|.|..+ ..++ ++..|. .+...+.|+.=..+... ......+....++..++ ++..|.| |.... |+. .
T Consensus 64 l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDGN-EGWI-VGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEEETT-EEEE-EEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSEE
T ss_pred EEEEEecCC-ceEE-EcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCee
Confidence 566777643 3334 444553 34444444432222211 11222333333443333 3444543 44333 332 2
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeE
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I 737 (917)
.....-.+.+..+..+++|.++++++.-....-||-... .-..........|..+.|+|++.+.+++ ..|.|
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~ 209 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQI 209 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-------cceEEccCccceehhceecCCCCEEEEe-CCcEE
Confidence 233445577888999999998888877666778885432 1112223356789999999998776654 88888
Q ss_pred EEEEC-CCCeeeEE-ecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCCC
Q psy3053 738 IIWSL-ENHLMTQQ-LSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEE 809 (917)
Q Consensus 738 ~iwDl-~~~~~~~~-l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~ 809 (917)
+.=+. .....-.. +.. ...-.+..++|.+++...++|+ .|.+ +.....|+.-.... .......+.|.++.
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 88772 22222222 111 1233478999999877776655 4433 34455565444432 24557778887666
Q ss_pred EEEEEeCCCeEEEE
Q psy3053 810 KVILGGALGMVYLV 823 (917)
Q Consensus 810 ~lv~gs~dG~I~vw 823 (917)
.-++-+.+|.|.-|
T Consensus 288 ~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 KGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEE-STTEEEEE
T ss_pred ceEEECCCcEEEEe
Confidence 77778888877655
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.71 Score=57.12 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=91.4
Q ss_pred cceEEEEEeCCCCEEEEEec--ccEEEEEEeccCee-----eEEec------cCCCceeEEEecCCC-CEEEEEECCCeE
Q psy3053 623 MTLSSLCILPDNCTMLVGCW--DSCVVIYDVECGRI-----VTELA------GHEDAISCVAWDEKR-KRLISGSWDCTV 688 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~--Dg~I~Iwdl~tg~~-----i~~l~------~H~~~Vt~l~~spd~-~~L~Sgs~DgtI 688 (917)
.++..+...+|+...++... +-.|..+|+++-.. ..-+. ....-+.++.|.|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555666777766555443 34788999875321 11111 122345678888742 235566788888
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC---CCCCCeEEEEEe
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD---DINASVNGVLFS 765 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~---~h~~~V~~v~fs 765 (917)
++..+... ............++|++|+|.|+.+++|-..|++.-|...- +....+.. .....|.+|+|-
T Consensus 181 ~V~~~~~~-------~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 181 RVKSTKQL-------AQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhh-------hhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEe
Confidence 88876543 12222245567789999999999999999999999886543 33333321 224789999998
Q ss_pred cCCCEEEEE
Q psy3053 766 EDGCRVLSC 774 (917)
Q Consensus 766 pdg~~L~s~ 774 (917)
....++++-
T Consensus 253 ~t~eflvvy 261 (1405)
T KOG3630|consen 253 STQEFLVVY 261 (1405)
T ss_pred cceeEEEEe
Confidence 776666643
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.26 Score=37.99 Aligned_cols=35 Identities=31% Similarity=0.690 Sum_probs=30.5
Q ss_pred cCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL 746 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~ 746 (917)
.....|.+++|+|..+++|.|+.+|.|.++.+ +++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 34567999999999999999999999999998 444
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.00 E-value=16 Score=39.74 Aligned_cols=222 Identities=12% Similarity=0.176 Sum_probs=125.5
Q ss_pred ceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec-----cCCCceEEEEEeCCCC------------EE
Q psy3053 666 AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL-----DLDNRIKCLAISKDNN------------QL 728 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~spdg~------------~L 728 (917)
.-+.|+++|.+..-++....+...+||.........+........ ......+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357899999998888888889999999863321111111111111 1234577777775332 35
Q ss_pred EEEECCCeEEEEECCCCee-----eEEecCCCCCC-eEEEEEecC--CCEEEEEe-CCCeEEEEECCCCeEEEEeecCCc
Q psy3053 729 AVGTEAGELIIWSLENHLM-----TQQLSDDINAS-VNGVLFSED--GCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~-----~~~l~~~h~~~-V~~v~fspd--g~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~ 799 (917)
+.+++||+|.-|...-+.. ...+.....+. -..+++... +.+|..+. ..++|.++|-.-......-.+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7788999999998533222 11222122233 334555532 45555443 567888888543221100000000
Q ss_pred -------eEE---------EEE---eCC-CEEEEEeCCCeEEEEECCCCEEEEEEec--CCCceEEE--------eecCC
Q psy3053 800 -------LLC---------LSW---AGE-EKVILGGALGMVYLVDLIQVQLLKQVRA--HKDAVLSL--------HFDNC 849 (917)
Q Consensus 800 -------i~~---------l~~---s~~-~~lv~gs~dG~I~vwdl~~~~~i~~l~~--h~~~V~si--------s~dg~ 849 (917)
... +.+ +++ ..-+.|...|.|-++|+ .++.++++.. .-..-+.| .+.+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 011 111 111 12334555688999997 5666666632 22222333 33677
Q ss_pred EEEEEeCCCeEEEEECcCCeEEEEecCCCC------CEEEEEEcC
Q psy3053 850 TMLVGCWDSCVVIYDVECGRIVTELAGHED------AISCVAWDE 888 (917)
Q Consensus 850 ~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~------~V~slafSp 888 (917)
+|+---.||+|..+|..+|+.+..+....+ .++.++|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 777777899999999999998888765433 467888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.033 Score=66.46 Aligned_cols=139 Identities=11% Similarity=0.139 Sum_probs=80.2
Q ss_pred ccEEEEEEeccCee-eEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 643 DSCVVIYDVECGRI-VTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~-i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
.+.+++-+..+... -..++|..+.|-.+.|.. +...+. -.-|.+.|||+.--.+.......+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45566655543321 123456677788888743 222222 22367889998654333333333333334445556666
Q ss_pred EeC---CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEE-----------EecCCCEEEEEeCCCeEEEEEC
Q psy3053 721 ISK---DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVL-----------FSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 721 ~sp---dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~-----------fspdg~~L~s~s~Dg~I~iwDl 785 (917)
|.| +..++..+..+|++++....+... ..+. .|...+..++ .||||..++.++.||.++.|.+
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 665 567788888889988876654322 2222 3555444433 5788888888888888877754
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=5.4 Score=47.16 Aligned_cols=180 Identities=11% Similarity=-0.023 Sum_probs=92.3
Q ss_pred CCEEEEEECCC-----eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECCCCeEEEEeecC
Q psy3053 725 NNQLAVGTEAG-----ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--CMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 725 g~~Lasgs~dG-----~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--g~I~iwDl~tg~~i~~~~~~ 797 (917)
+.++++|+.++ .+..||..++.-...-. ............-+|...+.||.+ ..+..||..+++-.......
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP-MNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC-CCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 45556666442 46678877754332211 111111111223467777777753 35788888766544333332
Q ss_pred Cce--EEEEEeCCCEEEEEeCCC---eEEEEECCCCEEEEE--EecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 798 EKL--LCLSWAGEEKVILGGALG---MVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 798 ~~i--~~l~~s~~~~lv~gs~dG---~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
.+. .+++...+..++.|+.++ .+..||..+.+-... +.........+..+++..+.|+ .+.+||.++++.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcE
Confidence 222 233333443566777553 477888877654321 1111112223356777767664 577899887765
Q ss_pred EEE--ecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCcc
Q psy3053 871 VTE--LAGHEDAISCVAWDEKRKRLISGNLV-----GAPKLYATEFY 910 (917)
Q Consensus 871 l~~--l~~h~~~V~slafSpdg~~LaSgs~D-----G~V~IWdl~~~ 910 (917)
... +.........+ .-+|+..+.||.+ .+|.+||.+..
T Consensus 428 ~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 428 TLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 432 21111122222 2367777888754 35777777643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=21 Score=40.04 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=86.4
Q ss_pred CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 713 DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
...+.++.+.+++..+++| ..|.+..-....++.-..........+.++.+.++++.++++ ..|.+.+=+...|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4568889999988766554 456554321122232333333456788999999998876654 56766543344444332
Q ss_pred EeecC-----CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe---cCCCceEEE-eecCCEEEEEeCCCeEEEE
Q psy3053 793 NKVFE-----EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR---AHKDAVLSL-HFDNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 793 ~~~~~-----~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~---~h~~~V~si-s~dg~~Lasgs~DG~I~Iw 863 (917)
....+ ..+..+.+.+++.+++++.+|.+.. ....++.-.... .-......+ ..+++..+..+..|.|..|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRY 328 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEe
Confidence 22221 3467788888778888888887664 444444333322 112234444 3355556667778888776
Q ss_pred E
Q psy3053 864 D 864 (917)
Q Consensus 864 d 864 (917)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 5
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.38 E-value=18 Score=38.70 Aligned_cols=227 Identities=11% Similarity=0.045 Sum_probs=137.7
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE-Ee
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT-EL 660 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~-~l 660 (917)
.-..|+-++||..-+++...|.|--.|-.+|+....-.+....-..+..-||+..-++-+.. .|.-.|-++.+... .+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34567888999888888888888777888887766655555555667777887765554333 34444444443221 11
Q ss_pred --ccCCCceeEEEecCCCCEEEEEECC---------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 661 --AGHEDAISCVAWDEKRKRLISGSWD---------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 661 --~~H~~~Vt~l~~spd~~~L~Sgs~D---------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
..-.+......|.+.|+.-+|+... +.|++|+.- .......|+..|+|..-+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------------CCCCCcceEECCCCcEEE
Confidence 2234557778889988888887531 345555432 234456788999999888
Q ss_pred EEECCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEE
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSW 805 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~ 805 (917)
+.-.+..|...|..++.....-. ......-..+--+|.|+.-++....+.+.-+|..+.. -.+... .....++.+
T Consensus 205 aslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rV 283 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRV 283 (353)
T ss_pred EeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeee
Confidence 87777788888887763322222 1112334455567788877787777888888876544 222222 223445555
Q ss_pred eCCCEEEE-EeCCCeEEEEECCC
Q psy3053 806 AGEEKVIL-GGALGMVYLVDLIQ 827 (917)
Q Consensus 806 s~~~~lv~-gs~dG~I~vwdl~~ 827 (917)
+..+.+.. -...|.|.-+|..+
T Consensus 284 D~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 284 DRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccCCcEEeeccccCceeecCccc
Confidence 55544433 23335555555544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=6.3 Score=46.62 Aligned_cols=185 Identities=15% Similarity=0.006 Sum_probs=83.1
Q ss_pred CCcEEEEEecCC-----ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc--cEEEEEEeccCeeeE--Eec
Q psy3053 591 EGISVASVGRDA-----MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--SCVVIYDVECGRIVT--ELA 661 (917)
Q Consensus 591 dg~~Lasgs~Dg-----~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--g~I~Iwdl~tg~~i~--~l~ 661 (917)
++..++.||.++ ++..||..+++-.................-++...++|+.+ .++..||..+++-.. .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345556666543 45567766554322111111111111223467777888764 357778876553322 221
Q ss_pred cCCCceeEEEecCCCCEEEEEECCC---eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDC---TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~Dg---tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
...... +++ .-+|+..+.||.++ ++..||..+.. ...... ......-.++ ..-++.+.+.| |.+.
T Consensus 351 ~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~----m~~~r~~~~~-~~~~~~IYv~G---G~~e 418 (480)
T PHA02790 351 KPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPS----TYYPHYKSCA-LVFGRRLFLVG---RNAE 418 (480)
T ss_pred CCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCC----CCCccccceE-EEECCEEEEEC---CceE
Confidence 111111 222 22567777777653 46778876542 110000 0001001122 23356666666 3567
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCC
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTG 788 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg 788 (917)
+||..+++-...-. ........-+..-+|+..+.||.+ ..+..||..++
T Consensus 419 ~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 88887654332211 111111111122366666776644 23555555544
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.18 E-value=7.2 Score=37.16 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=76.0
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-----CCCEEEEEECCCeEEEEECC
Q psy3053 669 CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-----DNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 669 ~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~Lasgs~dG~I~iwDl~ 743 (917)
.-.|......|+.++.-|.|.|.+.......................|++++-.+ +.+.|+.|+.. .+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3456556668888889999999987655322221233444556677888887655 34677777755 79999998
Q ss_pred CCeeeEEecCCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSE---DGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fsp---dg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
....+... .....|+++.+-. ...-++..+.+..|.-+|....+.
T Consensus 82 ~N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhhhh--hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 77655433 2446777777643 223455555566777777654443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.15 E-value=5.4 Score=37.97 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=71.3
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCe--------eeEEecCCCCCCeEEEEEec----C-CCEEEEEeCCCeEEEEEC
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENHL--------MTQQLSDDINASVNGVLFSE----D-GCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~~--------~~~~l~~~h~~~V~~v~fsp----d-g~~L~s~s~Dg~I~iwDl 785 (917)
-.|......|++++..|.|.|++..... .+..+. ....|++++-.+ + ...|+.| ....+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEc
Confidence 3455556678888999999999876432 233333 456777776554 2 3345554 4567999999
Q ss_pred CCCeEEEEeecCCceEEEEEeC----CCEEEEEeCCCeEEEEECCCCEEEE
Q psy3053 786 TTGMQVCNKVFEEKLLCLSWAG----EEKVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 786 ~tg~~i~~~~~~~~i~~l~~s~----~~~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
.....+.....+..+.++.+-. ...++..+.+..|.-||....+...
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 9888887777788888877631 2345555555566666655444433
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.8 Score=50.41 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=70.7
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCeeeEEec-cCCCceeEEEec--CCCCEEEEEECCCeEEEEeCCC-----CCCCcc
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVAWD--EKRKRLISGSWDCTVRVWNTGA-----SWSHMK 701 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~s--pd~~~L~Sgs~DgtI~vWdl~~-----~~~~~~ 701 (917)
-+.-++..++.+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|....|.++.-.. ......
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 33444444454555679999999887543322 457889999994 6899999999999999986321 111111
Q ss_pred CCcceeeeccC-CCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q psy3053 702 PSKSLVSQLDL-DNRIKCLAISKDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 702 ~~~~~~~~~~h-~~~V~~l~~spdg~~Lasgs~dG~I~iwDl 742 (917)
+...+. ...+ ..+|.+..|.++|..++.++ ..+.|+|-
T Consensus 117 ~i~~i~-i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKID-ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eeEEEE-eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111221 2233 36789999999998666543 45777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.01 E-value=27 Score=40.01 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=88.1
Q ss_pred CCCEEEEEE-CCCeEEEEECCC----CeeeEEecC------CCCCCeEEEEEecCCCEEEEEeC------CCeEEEEECC
Q psy3053 724 DNNQLAVGT-EAGELIIWSLEN----HLMTQQLSD------DINASVNGVLFSEDGCRVLSCGN------NCMLNVYDLT 786 (917)
Q Consensus 724 dg~~Lasgs-~dG~I~iwDl~~----~~~~~~l~~------~h~~~V~~v~fspdg~~L~s~s~------Dg~I~iwDl~ 786 (917)
+.++|+..+ ..+.|++.|+.+ .+..+.+.. ..-.....+..-|+|..++++-. -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456676666 678999999874 344454442 01123344556688988887632 2468888888
Q ss_pred CCeEEEEeecCCc----eEEEEEeCCC-EEEEE--------------------eCCCeEEEEECCCCEEEEEEecCCCc-
Q psy3053 787 TGMQVCNKVFEEK----LLCLSWAGEE-KVILG--------------------GALGMVYLVDLIQVQLLKQVRAHKDA- 840 (917)
Q Consensus 787 tg~~i~~~~~~~~----i~~l~~s~~~-~lv~g--------------------s~dG~I~vwdl~~~~~i~~l~~h~~~- 840 (917)
+.+.......... -..+-+.+.. .+++. ....++.+||+.+.+.++++.-....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7766655444222 2334445533 33332 12458999999999999998754332
Q ss_pred -eEEE----eecCCEEEE-EeCCCeEEEEEC-cCCeE----EEEecCC-----------------CCCEEEEEEcCCCCE
Q psy3053 841 -VLSL----HFDNCTMLV-GCWDSCVVIYDV-ECGRI----VTELAGH-----------------EDAISCVAWDEKRKR 892 (917)
Q Consensus 841 -V~si----s~dg~~Las-gs~DG~I~Iwdl-~tg~~----l~~l~~h-----------------~~~V~slafSpdg~~ 892 (917)
...+ .|+..+=++ +.-.++|..|-- +.++. +..+... ..-|+.+..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3334 334444333 334455555533 44442 2222110 244899999999999
Q ss_pred EEEEe-CCCcEEEEecCc
Q psy3053 893 LISGN-LVGAPKLYATEF 909 (917)
Q Consensus 893 LaSgs-~DG~V~IWdl~~ 909 (917)
|..+. .+|.|+.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 98665 789999999963
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.4 Score=48.78 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEECC-----C-
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFS--EDGCRVLSCGNNCMLNVYDLT-----T- 787 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fs--pdg~~L~s~s~Dg~I~iwDl~-----t- 787 (917)
++-+.-+.-++..++.+....+.|||.+.+.....-.-...+.|.++.|. |+|+.+++.|-.+.|.++.-. +
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 34444455555555555566799999998875554443457899999886 589999999999999998542 1
Q ss_pred ---CeEEEEee----cCCceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 788 ---GMQVCNKV----FEEKLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 788 ---g~~i~~~~----~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
-..+..+. .+.+|....|.++|.+++|+. +.+.++|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 12222222 236788999999988888775 46777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=91.87 E-value=11 Score=45.24 Aligned_cols=197 Identities=13% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE--e--ccCCCceeEEEecCCC
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE--L--AGHEDAISCVAWDEKR 676 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~--l--~~H~~~Vt~l~~spd~ 676 (917)
--.|+|++. +|+.+..+.-....+-.+.|+.+. .|++...+|++++|++... .+.. . ......|..+.+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc
Confidence 345888886 466666655555578888998665 5667789999999998632 2222 1 1122334444444455
Q ss_pred CEEEEEECCCeEEEEe-CCCCCCCccCCcceeeeccCCCceEEEEEeCCCC---EEEEEE-CCCeEEEEECCCC-eeeEE
Q psy3053 677 KRLISGSWDCTVRVWN-TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN---QLAVGT-EAGELIIWSLENH-LMTQQ 750 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWd-l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~Lasgs-~dG~I~iwDl~~~-~~~~~ 750 (917)
-.+.+. +|.+.+-+ ........ .+. ......+-.|-+..+++. .++--. ..| ..++..... .....
T Consensus 140 Vavlt~--~g~v~~i~~~~~~~~~~--~~d---iP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 VAVLTV--SGQVILINGVEEPKLRK--MPD---IPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA 211 (829)
T ss_pred eEEEec--CCcEEEEcCCCcchhhh--CCC---CCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc
Confidence 444443 44444332 22211000 000 001111113333333321 111111 111 011111111 11112
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--CceEEEEEeCCC
Q psy3053 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE--EKLLCLSWAGEE 809 (917)
Q Consensus 751 l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~--~~i~~l~~s~~~ 809 (917)
+. ...+.+..+..||+.++|+--..+|.+.+-+....+..+.+..+ .....++|.++.
T Consensus 212 ~~-~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 212 LS-WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cC-CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 22 22467888999999999999999999999988777766665532 333456666653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.80 E-value=2.9 Score=48.85 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=87.9
Q ss_pred ceEEEEEeCCCcEEEEEe--cCCceEEEeccCCceeeeeeccccceEEEEEeCC----CCEEEEEecccEEEEEEec---
Q psy3053 582 AITAVAICGEGISVASVG--RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD----NCTMLVGCWDSCVVIYDVE--- 652 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs--~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd----~~~Lasgs~Dg~I~Iwdl~--- 652 (917)
+|..++|....+.+.|.- ..|.++.=|. . .-+.-..|..++|.|- ...+++......|.||.+.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---K----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCc---c----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 677788875444444432 2333322221 1 1223345788999884 3355556667889999875
Q ss_pred --cCeeeEEeccC---CCc--eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 653 --CGRIVTELAGH---EDA--ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 653 --tg~~i~~l~~H---~~~--Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
.++.+..-..+ .-+ -..+.|+|....|+.-.....-.+.++... ...........+-|.|.+|.+||
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d------~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCD------SSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeC------CceEEEeccCCceEEEEEecCcC
Confidence 22332221111 111 235789998888877665554456665543 12344445677889999999999
Q ss_pred CEEEEEE-CCCeEEEEECCC
Q psy3053 726 NQLAVGT-EAGELIIWSLEN 744 (917)
Q Consensus 726 ~~Lasgs-~dG~I~iwDl~~ 744 (917)
+.|+++- ..=.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 8877653 334567888654
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=91.48 E-value=2.6 Score=53.97 Aligned_cols=230 Identities=14% Similarity=0.118 Sum_probs=110.9
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
....++|+|....+|.|+.+|.|+++-...-+......... -.+..+.+-...........+..+.+|.....
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~------ 110 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIK------ 110 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccc------
Confidence 34567899999999999999999999755333222111111 01222222222223334445566666664322
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEE-EEecCCCEEEEEeCCCeEE
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGV-LFSEDGCRVLSCGNNCMLN 781 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v-~fspdg~~L~s~s~Dg~I~ 781 (917)
...-....+++....+--.. +.| ..+.+++||..-.................. ...+..-.+..--.+-.-.
T Consensus 111 -----~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 111 -----TGVFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred -----ceeecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccc
Confidence 11122333444443333344 555 788888888753322111110100000000 0000000000000000011
Q ss_pred EEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 782 VYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
+|.+.... .....+...+.+..+......+.+...+.+..|+.........+....... ..++..++++..||++.
T Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~h~Dgs~~ 259 (993)
T KOG1983|consen 184 LISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE---SRDGSHFVSYHTDGSYA 259 (993)
T ss_pred eeeccccc-ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC---ccCCceEEEEEecCCEE
Confidence 11111111 111122334555555544466677777777777765544433333222222 67899999999999999
Q ss_pred EEECcCCeE
Q psy3053 862 IYDVECGRI 870 (917)
Q Consensus 862 Iwdl~tg~~ 870 (917)
.||...++.
T Consensus 260 fWd~s~g~~ 268 (993)
T KOG1983|consen 260 FWDVSSGKL 268 (993)
T ss_pred eeecCCCce
Confidence 999998765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.98 E-value=7.8 Score=44.06 Aligned_cols=147 Identities=10% Similarity=0.021 Sum_probs=79.0
Q ss_pred eEEEEEeCCCCEEEEEe-----------ccc-EEEEEEecc--Cee--eEEeccCCCceeEEEecCCCCEEEEEECCCeE
Q psy3053 625 LSSLCILPDNCTMLVGC-----------WDS-CVVIYDVEC--GRI--VTELAGHEDAISCVAWDEKRKRLISGSWDCTV 688 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs-----------~Dg-~I~Iwdl~t--g~~--i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI 688 (917)
...++|.++|++.++-. ..+ .|.+++-.+ |+. ...+...-.....+++.+++ .++ ++.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 35678888888776642 123 666665432 332 23333333456889999888 444 4444433
Q ss_pred EEEeCCCCCCCccCCcceeeecc-----CCCceEEEEEeCCCCEEEEEECC-------------------CeEEEEECCC
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLD-----LDNRIKCLAISKDNNQLAVGTEA-------------------GELIIWSLEN 744 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~spdg~~Lasgs~d-------------------G~I~iwDl~~ 744 (917)
++.|.............+..... +......+++.|+|.+.++-+.. |.|.-++..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 34454332111101112222121 23447789999999876654421 4566666665
Q ss_pred CeeeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
++.. .+..+ -.....++|+++|.++++-.
T Consensus 174 ~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKLR-VVAHG-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeEE-EEecC-cCCCccceECCCCCEEEEcc
Confidence 5432 33322 23456889999988876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.64 E-value=29 Score=37.82 Aligned_cols=211 Identities=11% Similarity=0.072 Sum_probs=114.7
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccC------Cc-eeeeeec-----cccceEEEEEeCCCC------------EEE
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKT------GR-QERSAVL-----SSMTLSSLCILPDNC------------TML 638 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t------~~-~~~~~~~-----~~~~V~sl~~spd~~------------~La 638 (917)
-+.|+++|.+.+-++....+...+||... .+ .+-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 35789999998777777788899999861 11 1222221 122345555553322 357
Q ss_pred EEecccEEEEEEeccCee-----eEEec-cCCCce-eEEEecC--CCCEEEEEE-CCCeEEEEeCCCCCCCccCC---cc
Q psy3053 639 VGCWDSCVVIYDVECGRI-----VTELA-GHEDAI-SCVAWDE--KRKRLISGS-WDCTVRVWNTGASWSHMKPS---KS 705 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~-----i~~l~-~H~~~V-t~l~~sp--d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~---~~ 705 (917)
.++.||+|.-|...-+.. ...+. +..+.| ..+++.. .+.+|..+. ..++|.|+|-.-........ ..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 788999999998533222 11222 112333 3455543 356666554 57899999853321000000 00
Q ss_pred e--------eeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEec------CCCE
Q psy3053 706 L--------VSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-DDINASVNGVLFSE------DGCR 770 (917)
Q Consensus 706 ~--------~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fsp------dg~~ 770 (917)
+ ....+..--|+-..-.++++.=+.|..-|.|-++|+. ++.++++. .+.-...+.++..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0000111111212222333333444455789999985 56666663 23445566777766 4566
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 771 VLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 771 L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
|+---.||+|..+|..+|+.+..+
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred EEeecCCceeEEecCCCCceeeee
Confidence 666667899999998888766443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.57 E-value=26 Score=43.38 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=19.1
Q ss_pred cceEEEEEeCCCCEEEEEecccEE
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
..|..+.++|+|+.+|..|..|.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~ 108 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV 108 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE
Confidence 457788899999999988876643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=37 Score=38.71 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=21.1
Q ss_pred eEEEEECCCCeEEEEeecCC---ceEEEEEeCCCEEEEEeC
Q psy3053 779 MLNVYDLTTGMQVCNKVFEE---KLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~~~~---~i~~l~~s~~~~lv~gs~ 816 (917)
.+.+||..++.-...-..+. .-.++...++..++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 58889988776543322221 123445555546667664
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.93 E-value=58 Score=40.40 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCC----------Cee---eEEe-------cCCCCCCeEEEEEecC---C
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN----------HLM---TQQL-------SDDINASVNGVLFSED---G 768 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~----------~~~---~~~l-------~~~h~~~V~~v~fspd---g 768 (917)
..-.|..+.++++|++++..+..|.+.+ .+.. |+. .+.+ .......|..+.|+|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3457899999999999999888765443 3321 111 1111 1134568899999995 5
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q psy3053 769 CRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg 788 (917)
..|++-..|+++++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 89999999999999999653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.70 E-value=51 Score=39.20 Aligned_cols=248 Identities=16% Similarity=0.199 Sum_probs=128.2
Q ss_pred eCCCCEEEEEecccEEEEEEeccCe--eeEEeccC-CCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcce
Q psy3053 631 LPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGH-EDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSL 706 (917)
Q Consensus 631 spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H-~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~ 706 (917)
..++..++.+..+|.+....+.... .....-+. ....+++++..++ .+|+.||.-|.=.++.+... ....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~------~l~~ 292 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS------NLEV 292 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE------SEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC------CcEE
Confidence 3457789999999999988876543 12222223 4566777776554 47888886554444433321 1233
Q ss_pred eeeccCCCceEEEEEeCC----CC------EEEEEE---CCCeEEEEECCCCeeeE--EecC-CC--CCCeEEEEEec-C
Q psy3053 707 VSQLDLDNRIKCLAISKD----NN------QLAVGT---EAGELIIWSLENHLMTQ--QLSD-DI--NASVNGVLFSE-D 767 (917)
Q Consensus 707 ~~~~~h~~~V~~l~~spd----g~------~Lasgs---~dG~I~iwDl~~~~~~~--~l~~-~h--~~~V~~v~fsp-d 767 (917)
......-++|..+++.+. .. .+++++ .+|.+++.. .|-... .... .. -..++.+.... +
T Consensus 293 ~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~ 370 (504)
T PF10433_consen 293 LDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSD 370 (504)
T ss_dssp EEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSS
T ss_pred EEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCC
Confidence 344556678888888532 11 455543 467787764 232222 1110 11 12333333222 2
Q ss_pred CCEEEEEeCCCeEEEEECC---CCeEEEE-----eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec-CC
Q psy3053 768 GCRVLSCGNNCMLNVYDLT---TGMQVCN-----KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA-HK 838 (917)
Q Consensus 768 g~~L~s~s~Dg~I~iwDl~---tg~~i~~-----~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~-h~ 838 (917)
+.+++.+..+.+ +++.+. .+..+.. +....+...+..-+++.++-.+..+ |++.+...++....+.. ..
T Consensus 371 ~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~~~~~w~~~~~ 448 (504)
T PF10433_consen 371 HSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGKLTQEWKPPAG 448 (504)
T ss_dssp BSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTSEEEEEE-TTS
T ss_pred ceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCeEEEEEeCCCC
Confidence 456666665543 455443 2333311 2222333333334455666666554 78888877777766643 45
Q ss_pred CceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEec-C----CCCCEEEEEEcC
Q psy3053 839 DAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELA-G----HEDAISCVAWDE 888 (917)
Q Consensus 839 ~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~-~----h~~~V~slafSp 888 (917)
..|.+.+.++..++.+..+|.+..+.++......... . ....|.|+..+|
T Consensus 449 ~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 449 SIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp ---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 5666777888888888889999999998777653332 1 457788888776
|
... |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.8 Score=53.88 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCcEEEE--EecCCceEEEeccCCceee-----eeec------cccceEEEEEeCCC-CEEEEEecccEEE
Q psy3053 582 AITAVAICGEGISVAS--VGRDAMLKIHSLKTGRQER-----SAVL------SSMTLSSLCILPDN-CTMLVGCWDSCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Las--gs~Dg~I~IWd~~t~~~~~-----~~~~------~~~~V~sl~~spd~-~~Lasgs~Dg~I~ 647 (917)
+|..+...+|+...++ .+.+-.|..||+.+-..-. -+.. ...-..++.|.|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555666667654333 3334467888886432211 1111 12234567787753 3456677889898
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
+..+.-......--.....++|++|+|.|+.++.|-..|++.-|..........+... ......|.|++|-....+
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp----~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP----VEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC----cCCCcceeEEEEecceeE
Confidence 8876543322222235567899999999999999999999999876443111111111 112578999999877666
Q ss_pred EEE
Q psy3053 728 LAV 730 (917)
Q Consensus 728 Las 730 (917)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 655
|
|
| >PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function | Back alignment and domain information |
|---|
Probab=88.60 E-value=3.3 Score=38.18 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=64.6
Q ss_pred cccccceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceee-----eccccCcceEEEEEEec
Q psy3053 152 EDLYEKVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRII-----RRRFLLQQVGIEIYFKD 226 (917)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~-----~r~~~~~~~~~e~~~~~ 226 (917)
+++.-++.+.++|..-..+. .-|.++|.|..+-|-...| ....++||+++|..|. +.++.-| .+|+++.
T Consensus 3 qSlNtkvdl~~~ats~~g~~-~yGkimiGDkaFEFyn~~n--~~dyIQIPW~eI~~V~a~V~fkgk~I~R---F~I~Tk~ 76 (118)
T PF06115_consen 3 QSLNTKVDLTTKATSYLGLG-KYGKIMIGDKAFEFYNDRN--VEDYIQIPWEEIDYVIASVSFKGKWIPR---FAIFTKK 76 (118)
T ss_pred cccccEEEEEEeeEEEeccc-ccCeEEEcccceEeecCCC--hhhcEEeChhheeEEEEEEEECCCEEee---EEEEECC
Confidence 45667888888888777766 7899999999999954433 5778999999998763 4455443 8999887
Q ss_pred CCCceeEEEecCChhhHHHHHHHHhCCc
Q psy3053 227 LEPVKYLYLTLKTQGARDTLYNALLDLP 254 (917)
Q Consensus 227 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (917)
+ .. +.|.+.+ -.++++.+....
T Consensus 77 ~---G~--f~Fsskd-~k~~Lk~~r~yv 98 (118)
T PF06115_consen 77 N---GK--FTFSSKD-SKKVLKAIRKYV 98 (118)
T ss_pred C---CE--EEEEECC-hHHHHHHHHHhc
Confidence 4 12 3455433 345777776554
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.50 E-value=49 Score=37.48 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=108.9
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccC--CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGH--EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H--~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
+..+.++..+|.|.-.|.++++.+.....- ...+.+-....+|+ ++.++.+|.+...|..++... -...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~--------W~~~ 138 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLV--------WSRN 138 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEE--------EEEe
Confidence 345556688888988899888866533322 12333333333554 788888998888887655211 1111
Q ss_pred CCC--ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCC--CCCeEEEEEecCCCEEEEEeC--CCeEEEEEC
Q psy3053 712 LDN--RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI--NASVNGVLFSEDGCRVLSCGN--NCMLNVYDL 785 (917)
Q Consensus 712 h~~--~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h--~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl 785 (917)
... .+..-.+-.++ .+..++.+|.+...|..++.......... ...+..-....++ .+..+.. ++.+.-.|.
T Consensus 139 ~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 139 VGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNA 216 (370)
T ss_pred cCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEc
Confidence 111 11112222233 34444478999999999888877654221 1111111112233 3444444 567888888
Q ss_pred CCCeEEEEeecCCceEE-----E-EE-----eCCCEEEEEeCCCeEEEEECCCCEEEEEEecC
Q psy3053 786 TTGMQVCNKVFEEKLLC-----L-SW-----AGEEKVILGGALGMVYLVDLIQVQLLKQVRAH 837 (917)
Q Consensus 786 ~tg~~i~~~~~~~~i~~-----l-~~-----s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h 837 (917)
.+|...........+.. . .. .-++.+..++.+|.+...|..+++.+......
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 88887766432211111 0 11 11334567888899999999999998887754
|
|
| >KOG2063|consensus | Back alignment and domain information |
|---|
Probab=88.40 E-value=19 Score=45.08 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=41.3
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeee-----------eccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSA-----------VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-----------~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
.++..-|+.+..|+.+|.+.+|.+......... ..+..+|..+...+.-..+.+ ..|+.+.++++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcc
Confidence 344556788999999999999998654221110 112345555544444333333 34677888877654
Q ss_pred ee
Q psy3053 655 RI 656 (917)
Q Consensus 655 ~~ 656 (917)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 43
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.5 Score=45.03 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=90.8
Q ss_pred CCCCEEE-EEecccEEEEEEeccCeeeEEeccCCCceeEEEecCC--------CCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 632 PDNCTML-VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK--------RKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 632 pd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd--------~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
.|.++|. .|+....++-.|++.|+.+..+..|.+. -+.+.|. .+.|+-.| +..|.-.|.+-......
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~- 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIK- 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCcee-
Confidence 3444443 4666778888999999999999888775 4667664 23455444 44454445443210000
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
..............|..- ....++|+|+..|.|++||--..+....+. +.+..|..+..+.+|+++++.+.. .+.+
T Consensus 553 -v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk~-yllL 628 (776)
T COG5167 553 -VVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCKN-YLLL 628 (776)
T ss_pred -eeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeecc-eEEE
Confidence 000000111122222222 245689999999999999965544444444 778899999999999998887754 6777
Q ss_pred EECC
Q psy3053 783 YDLT 786 (917)
Q Consensus 783 wDl~ 786 (917)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7764
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.89 E-value=58 Score=37.60 Aligned_cols=262 Identities=10% Similarity=0.064 Sum_probs=144.2
Q ss_pred CcEEEEEecCCceEEEeccCCcee-eee---eccccceEEEEEe---C--CCCEEEEEecccEEEEEEecc--Ce-----
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQE-RSA---VLSSMTLSSLCIL---P--DNCTMLVGCWDSCVVIYDVEC--GR----- 655 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~-~~~---~~~~~~V~sl~~s---p--d~~~Lasgs~Dg~I~Iwdl~t--g~----- 655 (917)
...|++||.+|.++||+...+... ..+ ..-..+|..+..- + +...||+ -.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998543311 000 1123466665532 2 2234444 4456677887732 11
Q ss_pred --eeEEeccCCC--ceeEEEecC----C-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 656 --IVTELAGHED--AISCVAWDE----K-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 656 --~i~~l~~H~~--~Vt~l~~sp----d-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
.+..+..|.- ....++.-| . ...|..-|.||.+.+++-+.- ........---...+++.+..+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--------~f~~~lp~~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--------AFSRFLPDFLLPGPLCYCPRTD 187 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--------EEEEEcCCCCCCcCeEEeecCC
Confidence 1222222322 222333322 2 367888999999999996543 1111222222234577888888
Q ss_pred EEEEEECCCeEEEEECCCC--------------------e---eeEEecCCCCCCeEEEEE---ecCCCEEEEEeCCCeE
Q psy3053 727 QLAVGTEAGELIIWSLENH--------------------L---MTQQLSDDINASVNGVLF---SEDGCRVLSCGNNCML 780 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~--------------------~---~~~~l~~~h~~~V~~v~f---spdg~~L~s~s~Dg~I 780 (917)
.+++++.+..+.-|....- + +..++ .-+..+.++.. +.....+++-+ ...+
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~--nlGE~~l~i~v~~~~~~~~~IvvLg-er~L 264 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF--NLGEQALDIQVVRFSSSESDIVVLG-ERSL 264 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEE--ECCceeEEEEEEEcCCCCceEEEEe-cceE
Confidence 8999888888887754210 0 00111 12233333333 22333344433 3456
Q ss_pred EEEECCCCeEEEEeecCCceEEEEEe-------CCC--EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe---e--
Q psy3053 781 NVYDLTTGMQVCNKVFEEKLLCLSWA-------GEE--KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH---F-- 846 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~i~~l~~s-------~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis---~-- 846 (917)
.+.+- +|........+....|++.- ++. .+++++.++.+.+|.-.+......+ ...+| +++ .
T Consensus 265 f~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~ 340 (418)
T PF14727_consen 265 FCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNG 340 (418)
T ss_pred EEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCC
Confidence 66664 56777777777666665531 221 3899999999999975443333222 22333 331 1
Q ss_pred cCCEEEEEeCCCeEEEEECcCCe
Q psy3053 847 DNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
-...|++-+.+|.+.+--+.|.-
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCceEEEEcCCCcEEEEEeCCCC
Confidence 25668888889998887765544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.64 E-value=7.9 Score=47.14 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=75.9
Q ss_pred eeEEEecC--CCCEEEEEECCCeEEEEeCCCCC----------CC--ccCCcceeeeccCCCceEEEEEe--CCCCEEEE
Q psy3053 667 ISCVAWDE--KRKRLISGSWDCTVRVWNTGASW----------SH--MKPSKSLVSQLDLDNRIKCLAIS--KDNNQLAV 730 (917)
Q Consensus 667 Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~----------~~--~~~~~~~~~~~~h~~~V~~l~~s--pdg~~Las 730 (917)
|+.|.... +...|+.|..||.|.+|.+++-. .. ................+++++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 55554433 45688999999999999753210 00 00000111223345688999999 78899999
Q ss_pred EECCCeEEEEECCCC--eeeEEecCCCCCCeEEEEEecCC---C---EEEEEeCCCeEEEEEC
Q psy3053 731 GTEAGELIIWSLENH--LMTQQLSDDINASVNGVLFSEDG---C---RVLSCGNNCMLNVYDL 785 (917)
Q Consensus 731 gs~dG~I~iwDl~~~--~~~~~l~~~h~~~V~~v~fspdg---~---~L~s~s~Dg~I~iwDl 785 (917)
++....|.|+-.... +....-...+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998888888755432 11111112356778899998743 2 7888889999988877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.61 E-value=53 Score=36.78 Aligned_cols=177 Identities=10% Similarity=-0.006 Sum_probs=87.2
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeeeEE--ecC--CCCCCeEEEEEecCCCEEEEEeCC-----------CeEEEE
Q psy3053 724 DNNQLAVGTEA-----GELIIWSLENHLMTQQ--LSD--DINASVNGVLFSEDGCRVLSCGNN-----------CMLNVY 783 (917)
Q Consensus 724 dg~~Lasgs~d-----G~I~iwDl~~~~~~~~--l~~--~h~~~V~~v~fspdg~~L~s~s~D-----------g~I~iw 783 (917)
++++++.|+.+ ..+.+||+.+.+-... +.. .........+..-+++..+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 46677777653 3477889877543221 100 011112222233456666776643 247788
Q ss_pred ECCCCeEEEEeecC----C-ceEEEEEeCCCEEEEEeC-------------CCeEEEEECCCCEEEEEE-----ecCCCc
Q psy3053 784 DLTTGMQVCNKVFE----E-KLLCLSWAGEEKVILGGA-------------LGMVYLVDLIQVQLLKQV-----RAHKDA 840 (917)
Q Consensus 784 Dl~tg~~i~~~~~~----~-~i~~l~~s~~~~lv~gs~-------------dG~I~vwdl~~~~~i~~l-----~~h~~~ 840 (917)
|..+.+-....... . .-.+++...+..++.|+. ...+.+||..+.+-...- ......
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~ 244 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV 244 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence 98876543221111 1 111233333334555542 246888998876543321 111122
Q ss_pred eEEEeecCCEEEEEeCC--------------CeEEEEECcCCeEEEEecC-----CCCC--EEEEEEcCCCCEEEEEeCC
Q psy3053 841 VLSLHFDNCTMLVGCWD--------------SCVVIYDVECGRIVTELAG-----HEDA--ISCVAWDEKRKRLISGNLV 899 (917)
Q Consensus 841 V~sis~dg~~Lasgs~D--------------G~I~Iwdl~tg~~l~~l~~-----h~~~--V~slafSpdg~~LaSgs~D 899 (917)
..++..++++++.|+.. ..+..+|..+.+....-.. .... ..++...-+++.++.||.+
T Consensus 245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~ 324 (341)
T PLN02153 245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKL 324 (341)
T ss_pred eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcC
Confidence 23345677788888752 2577888876654322110 1111 1233344455677777764
Q ss_pred C
Q psy3053 900 G 900 (917)
Q Consensus 900 G 900 (917)
+
T Consensus 325 ~ 325 (341)
T PLN02153 325 P 325 (341)
T ss_pred C
Confidence 4
|
|
| >smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.1 Score=36.55 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=46.2
Q ss_pred cCCCceeeEEEeEEEEEcCCCcccccccCCeEEeeeeeeEEccCCCCCC--ceeecCccccccCCC
Q psy3053 20 LEPGEFYFDDLSVVLILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALP--LIKIPLKECTSLSKF 83 (917)
Q Consensus 20 l~~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~f~~~~~~~~--~~~~~~~~~~~~~~~ 83 (917)
|.++|.-+.+|.|.+. ......|||-|..+-|.|-....... .+.||++++.++++.
T Consensus 2 l~~~E~l~~~~~C~l~-------~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLS-------RDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEEC-------CCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 5689999999999986 22456799999999999998765543 599999999888753
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.49 Score=57.01 Aligned_cols=118 Identities=6% Similarity=0.012 Sum_probs=75.2
Q ss_pred eeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEecc--CCceeeeeec-----cccceEEEEEe---CCCCEEEEEec
Q psy3053 574 HFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLK--TGRQERSAVL-----SSMTLSSLCIL---PDNCTMLVGCW 642 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~--t~~~~~~~~~-----~~~~V~sl~~s---pd~~~Lasgs~ 642 (917)
..+++..+.|-.++|.... ..+. -.-|.+.||+++ .|+....+.. -...+.-+.|+ ++..++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 3457778888888885422 1111 223678899875 3443322222 12233334444 46677888888
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEE-----------ecCCCCEEEEEECCCeEEEEeCC
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVA-----------WDEKRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~-----------~spd~~~L~Sgs~DgtI~vWdl~ 694 (917)
++++++..+++... ..+.+|...++.++ .+|||..+++++.||.++.|.+.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 99999888765433 44556777666654 47899999999999999999763
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=46 Score=40.35 Aligned_cols=195 Identities=11% Similarity=0.052 Sum_probs=97.8
Q ss_pred ceEEEEEeCCCcEEEEEecCC-ceEEEeccCCce----eeeeeccccceEEEEEeCCCCEEEEEec--cc--EEEEEEec
Q psy3053 582 AITAVAICGEGISVASVGRDA-MLKIHSLKTGRQ----ERSAVLSSMTLSSLCILPDNCTMLVGCW--DS--CVVIYDVE 652 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg-~I~IWd~~t~~~----~~~~~~~~~~V~sl~~spd~~~Lasgs~--Dg--~I~Iwdl~ 652 (917)
.+.+.+.|+++..+|..+.++ .+.+..+..+.. .... .....++.-.|.+++ .+.+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~-~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGV-TADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCcccccccee-eccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-
Confidence 677889999998888777665 455544433322 1111 122335555566666 3444321 22 2444442
Q ss_pred cCeeeEE-eccCCC-ceeEEEecCCCCEEEEEEC---CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 653 CGRIVTE-LAGHED-AISCVAWDEKRKRLISGSW---DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 653 tg~~i~~-l~~H~~-~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
+|+.... .....+ .|+.+..|+||-.++.... .+.|.+=-+...................-..+.+++|..++.+
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL 520 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQL 520 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEE
Confidence 3433210 112223 7999999999998776543 2555554443321111111111112122334899999999988
Q ss_pred EEEEEC-C--CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeE
Q psy3053 728 LAVGTE-A--GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCML 780 (917)
Q Consensus 728 Lasgs~-d--G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I 780 (917)
++.|.. + ..+...++.......... ..-..+..++...+.. .++.+..++.|
T Consensus 521 ~Vlg~~~~~~~~v~~v~vdG~~~~~~~~-~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 521 VVLGREEGGVQQARYVQVDGSTPPASAP-AAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEeccCCCCcceEEEecCCcCcccccc-cCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 776643 2 334444444332211111 2334556666666555 34442444443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=87.09 E-value=53 Score=36.24 Aligned_cols=267 Identities=12% Similarity=0.086 Sum_probs=120.6
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCC-ceeee--eecc---ccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTG-RQERS--AVLS---SMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~-~~~~~--~~~~---~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
...+.+|+|..+..-.++| ..+.| +...+| +.=.. .... .....++.+..+ ...++| ..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCC
Confidence 3478889998555555554 45543 333332 22111 1111 223566766543 344444 444 33444444
Q ss_pred CeeeEEec---cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 654 GRIVTELA---GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 654 g~~i~~l~---~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
|+.=..+. .-.+....+....++ ....++..|. ||....+..... . ...+....+..+.-+++|+++++
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~---~--~~~~~~gs~~~~~r~~dG~~vav 161 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQ---A--VVSETSGSINDITRSSDGRYVAV 161 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEE---E--EE-S----EEEEEE-TTS-EEEE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCee---E--cccCCcceeEeEEECCCCcEEEE
Confidence 44322221 112233333333333 3333344444 344333321111 1 12344567888889999998888
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC-CCCeEEEE--ee---cCCceEEEE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL-TTGMQVCN--KV---FEEKLLCLS 804 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl-~tg~~i~~--~~---~~~~i~~l~ 804 (917)
+.......-||-.... -..........|..+.|+|++...+.+ ..|.|+.=+. ........ .. ..-.+..++
T Consensus 162 s~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA 239 (302)
T ss_dssp ETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred ECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEE
Confidence 7666556677754321 112221356899999999998766644 8888888772 22222222 11 122378899
Q ss_pred EeCCCEEEEEeCCCeEEEEECCCCEEEEEEe---cCCCceEEEee-cCCEEEEEeCCCeEEEE
Q psy3053 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQVR---AHKDAVLSLHF-DNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 805 ~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~---~h~~~V~sis~-dg~~Lasgs~DG~I~Iw 863 (917)
+.+++.+.+++..|.+.+ ....|+.-...+ .-......+.+ +...-.+-+.+|.+.-|
T Consensus 240 ~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 240 YRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 998888888888886554 444444333322 22344566633 44555566678876544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.08 E-value=23 Score=43.25 Aligned_cols=149 Identities=13% Similarity=0.175 Sum_probs=89.4
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCCccC--C------cc-------eeeeccCCCceEEEEEeC--CCCEEEEEECCCeEE
Q psy3053 676 RKRLISGSWDCTVRVWNTGASWSHMKP--S------KS-------LVSQLDLDNRIKCLAISK--DNNQLAVGTEAGELI 738 (917)
Q Consensus 676 ~~~L~Sgs~DgtI~vWdl~~~~~~~~~--~------~~-------~~~~~~h~~~V~~l~~sp--dg~~Lasgs~dG~I~ 738 (917)
.+++++|. .+.|.||+.......... . .. ..........|+-+.+.. ....|+++.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 46666655 778999987654321100 0 00 000011223455554443 446889999999999
Q ss_pred EEECCC-------C----ee---eE----EecCCCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEECCCC--eEE--EEe
Q psy3053 739 IWSLEN-------H----LM---TQ----QLSDDINASVNGVLFS--EDGCRVLSCGNNCMLNVYDLTTG--MQV--CNK 794 (917)
Q Consensus 739 iwDl~~-------~----~~---~~----~l~~~h~~~V~~v~fs--pdg~~L~s~s~Dg~I~iwDl~tg--~~i--~~~ 794 (917)
+|.+++ . .. .. .+.......+++++++ ...++||+++....|.||-.... +.. ...
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 996631 0 00 00 0111234678899998 78888888888888888765432 111 123
Q ss_pred ecCCceEEEEEeCC-----C--EEEEEeCCCeEEEEEC
Q psy3053 795 VFEEKLLCLSWAGE-----E--KVILGGALGMVYLVDL 825 (917)
Q Consensus 795 ~~~~~i~~l~~s~~-----~--~lv~gs~dG~I~vwdl 825 (917)
.+...|.+++|-++ | .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 45567888888532 2 5777888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=85.94 E-value=60 Score=35.79 Aligned_cols=239 Identities=11% Similarity=0.023 Sum_probs=113.8
Q ss_pred CCCEEEEEecccEEEEEEecc--CeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCC--------cc
Q psy3053 633 DNCTMLVGCWDSCVVIYDVEC--GRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSH--------MK 701 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~t--g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~--------~~ 701 (917)
++++|+.|+.+|-. +.++.. ++..+.+ +...|+++...+.-+.|++-+ ....++++++..-... ..
T Consensus 12 ~~~~lL~GTe~Gly-~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLY-VLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceE-EEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 33689999998854 444554 3333333 466899999998877777655 3334999998433210 00
Q ss_pred CCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCC----eeeEEe---cCCCCCCeEEEEEecC--CCEE
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENH----LMTQQL---SDDINASVNGVLFSED--GCRV 771 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~----~~~~~l---~~~h~~~V~~v~fspd--g~~L 771 (917)
..........+.......++.... ..++++....+|.++..... ...+.. ......++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 001111122333323333333221 23344444556666543221 111110 1011234444433433 4566
Q ss_pred EEEeCCCeEEEEECCC--CeEEE----Eeec-CC-ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE-EEecCCCceE
Q psy3053 772 LSCGNNCMLNVYDLTT--GMQVC----NKVF-EE-KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK-QVRAHKDAVL 842 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~t--g~~i~----~~~~-~~-~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~-~l~~h~~~V~ 842 (917)
+.|+..+...++++.. ..... .... .. ...++..-+++.++.+-.+. ....|....+..+ ..-.-.....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~w~~~p~ 247 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEF-GVFVNLYGKRRSRNPILHWEFMPE 247 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcE-EEEEeCCCCccccceEEEcCCccc
Confidence 6666542344444432 11000 0000 11 23333333333444444433 3333433211111 1112344556
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecC
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~ 876 (917)
++.....++++-+.++ |.++++.+++.++++..
T Consensus 248 ~~~~~~pyll~~~~~~-ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 248 SFAYHSPYLLAFHDNG-IEIRSIKTGELLQELAD 280 (302)
T ss_pred EEEEECCEEEEEcCCc-EEEEECCCCceEEEEec
Confidence 6677778877776555 99999999999888863
|
Unpublished observations. |
| >PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=85.86 E-value=0.37 Score=40.38 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=42.2
Q ss_pred cCCCceeeEEEeEEEEEcCCCcccccccCCeEEeeeeeeEEccCCCCCCc--eeecCccccccCC
Q psy3053 20 LEPGEFYFDDLSVVLILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPL--IKIPLKECTSLSK 82 (917)
Q Consensus 20 l~~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~f~~~~~~~~~--~~~~~~~~~~~~~ 82 (917)
|.++|.-.++|+|.+..+ .....|+|-|.+.-|.|.++....+. +.||++++..|++
T Consensus 9 lp~~E~li~~~~c~l~~~------~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 9 LPEEERLIEEYSCALFKS------KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEK 67 (69)
T ss_dssp --TT--EEEEEEETTTEE---------EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEE
T ss_pred CCCCCeEEEEEEEEEECC------ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEE
Confidence 889999999999886432 45567999999999999998877765 9999999988864
|
It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.73 E-value=5.6 Score=41.72 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=52.2
Q ss_pred CceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEe-------c-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3053 839 DAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTEL-------A-------GHEDAISCVAWDEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 839 ~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l-------~-------~h~~~V~slafSpdg~~LaSgs~DG~V~I 904 (917)
.++..+..++.++++-+.+|.+++||+.+++.+..- . .....|..+..+.+|.-+++-+ +|..+.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 355556778889999999999999999888764322 1 3456788899998888777655 578888
Q ss_pred EecC
Q psy3053 905 YATE 908 (917)
Q Consensus 905 Wdl~ 908 (917)
|+.+
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 8876
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=85.48 E-value=16 Score=47.92 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=85.6
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
+.|...++.|.-+++|..+=. .|+.+..||.....-...-.....+++.+.-..||+..| .++.. +-|+..+..
T Consensus 359 kaH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~~-l~nLSs~~~ 432 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDDT-LVNLSSGQM 432 (1774)
T ss_pred HHHHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCCc-eeecCCCCc
Confidence 567778888888888876532 577777777654421110111223344444333443333 11110 223333221
Q ss_pred eEEeccCCCceeEEEecCCCCE-EEEEECCCeEEEEeCCCCCCCccCCc-ceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 657 VTELAGHEDAISCVAWDEKRKR-LISGSWDCTVRVWNTGASWSHMKPSK-SLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~-L~Sgs~DgtI~vWdl~~~~~~~~~~~-~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
.. ..-+.+.+...++++.. +.++....++.+|++........+.. ......+......+|.++++ .|+++..+
T Consensus 433 ~~---~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADse 507 (1774)
T PF11725_consen 433 SE---AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSE 507 (1774)
T ss_pred ch---hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCC
Confidence 11 11234666777888887 55666566779999876533222211 11222233346777888765 68888999
Q ss_pred CeEEEEECCC
Q psy3053 735 GELIIWSLEN 744 (917)
Q Consensus 735 G~I~iwDl~~ 744 (917)
|.++.=++..
T Consensus 508 GkLYsa~l~~ 517 (1774)
T PF11725_consen 508 GKLYSADLPA 517 (1774)
T ss_pred CCEEeccccc
Confidence 9988877653
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=85.43 E-value=0.52 Score=53.39 Aligned_cols=234 Identities=11% Similarity=0.127 Sum_probs=132.3
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEeccC
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAGH 663 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~H 663 (917)
...|-+.+.-++.++.+..+..||-.. +..-... ..+....++|..++..++ .+-..+.+.+||+.+....+.-.+-
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 345677776688888888888888542 2222221 233445677887776554 4566789999999865332211122
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
+..-.-+.|++.+..++.+...|.+.+++..+.. .......|...++++++.+++..+ .++.|..+.+-...
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR-------~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~~L~v~~qe 188 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR-------RIIVMGKHQRRGTQIAVTLEDYVI-LCDCDNTLSVTTQE 188 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchh-------hhhhhcccccceeEEEecccceee-ecCcHHHHHHhhhc
Confidence 2222237899988999999999999999976651 222223388899999999987544 44444444333222
Q ss_pred CCeeeEEec-CCCCCCeE--EEE---EecCCCEEEEEeCCCeEEE-----EECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 744 NHLMTQQLS-DDINASVN--GVL---FSEDGCRVLSCGNNCMLNV-----YDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 744 ~~~~~~~l~-~~h~~~V~--~v~---fspdg~~L~s~s~Dg~I~i-----wDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
+. ...... .+..+... .++ |...|..+.+.-.. .+.+ -.......+.-....+.+.|..|-.+|.+.
T Consensus 189 ge-ta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsg-Kkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~i~ 266 (615)
T KOG2247|consen 189 GE-TASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSG-KKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGYIL 266 (615)
T ss_pred cc-eeeeeeccCccchhhhheeeeeccccccceeeeeeec-HHHHHHHhhcCCCCccceEeeecCCceeEEEEecccccc
Confidence 21 111111 01111111 111 22223333322111 1111 011111122222334668999999999999
Q ss_pred EEeCCCeEEEEECCCCEE
Q psy3053 813 LGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~ 830 (917)
.|..-|.|..-+..+++.
T Consensus 267 igf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 267 IGFDAGYIVSISAHNAEL 284 (615)
T ss_pred ccccceeEEEEeccchHH
Confidence 999999998888776654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.34 E-value=6.1 Score=41.41 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=50.8
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeEEEEe---------------ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK---------------VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~---------------~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
+..++.++++.+.+|.+++||+.+++.+... .....|..+..+.+|..++.-.+|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4557889999999999999999998765432 2334577777777777777777788888887554
Q ss_pred EEE
Q psy3053 829 QLL 831 (917)
Q Consensus 829 ~~i 831 (917)
.-+
T Consensus 98 ~W~ 100 (219)
T PF07569_consen 98 CWI 100 (219)
T ss_pred eeE
Confidence 433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.40 E-value=8.9 Score=44.01 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC--------CEEEEEeCCCeEEEEECCC-CEEEEEEec
Q psy3053 767 DGCRVL-SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE--------EKVILGGALGMVYLVDLIQ-VQLLKQVRA 836 (917)
Q Consensus 767 dg~~L~-s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~--------~~lv~gs~dG~I~vwdl~~-~~~i~~l~~ 836 (917)
+..+|. .++....++-.|+..|+.+........+ -+.+.|. ..-++|-++..|.-.|.+- |..+.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4455567888888889888887776666 4555542 2345676777777777653 322222211
Q ss_pred ----CCCceEE-EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 837 ----HKDAVLS-LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 837 ----h~~~V~s-is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
....-.| +.-...++|+|+..|.|++||--..+....+++-...|..+..+.+|+++++.+.. .+.+-|+.
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 1111222 24467899999999999999965445555667778899999999999998877654 45555553
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=81 Score=35.90 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=19.2
Q ss_pred EEEEECCCCEEE--EEEecCCCceEEEeecCCEEEEEeCC
Q psy3053 820 VYLVDLIQVQLL--KQVRAHKDAVLSLHFDNCTMLVGCWD 857 (917)
Q Consensus 820 I~vwdl~~~~~i--~~l~~h~~~V~sis~dg~~Lasgs~D 857 (917)
+.+||..+.+-. ..+........++..++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 456777665432 22211112223446677777777753
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=84.34 E-value=71 Score=35.23 Aligned_cols=239 Identities=10% Similarity=0.034 Sum_probs=117.0
Q ss_pred CCcEEEEEecCCceEEEeccC--CceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEeccCee-----------
Q psy3053 591 EGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVECGRI----------- 656 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t--~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~----------- 656 (917)
++++|+.|..+|...+. ... ++..+. .+...|+++...+..+.|++-+ ....++.+++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34688999998876655 443 222222 3455788999888777666544 445599999853221
Q ss_pred ----eEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcce-eeeccCCCceEEEEEeCC--CCEE
Q psy3053 657 ----VTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSL-VSQLDLDNRIKCLAISKD--NNQL 728 (917)
Q Consensus 657 ----i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~-~~~~~h~~~V~~l~~spd--g~~L 728 (917)
....-+|.......+..... ..++.+....+|.++............... ........++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01122344444433443222 233344445667775443321111101100 000111233333333433 4677
Q ss_pred EEEECCCeEEEEECCC--CeeeE----EecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC--CeEEEEeecCCce
Q psy3053 729 AVGTEAGELIIWSLEN--HLMTQ----QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT--GMQVCNKVFEEKL 800 (917)
Q Consensus 729 asgs~dG~I~iwDl~~--~~~~~----~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t--g~~i~~~~~~~~i 800 (917)
+.|+..+...++++.. ..... ...........++.--+++.++++ -.+ ...+.|... ......+.....+
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc-~~~-~~v~Vn~~G~~~~r~~~l~w~~~p 246 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLC-YDE-FGVFVNLYGKRRSRNPILHWEFMP 246 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEE-ECc-EEEEEeCCCCccccceEEEcCCcc
Confidence 7777753344444432 11000 000011102333333344444443 333 344445432 1122345566777
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~ 836 (917)
.++++... ++++-. +..|.++++.++..+.++..
T Consensus 247 ~~~~~~~p-yll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 247 ESFAYHSP-YLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEECC-EEEEEc-CCcEEEEECCCCceEEEEec
Confidence 78888764 555554 45599999999988888763
|
Unpublished observations. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.83 E-value=89 Score=36.91 Aligned_cols=270 Identities=16% Similarity=0.099 Sum_probs=133.1
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
...+|..+.+...| .+.+|+.|| +..||..+++..+.-.... .+|..+..+-.+ .+..|+.+| |.+.+.+...
T Consensus 163 ~d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~-- 236 (671)
T COG3292 163 KDTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWR-- 236 (671)
T ss_pred cCccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcc--
Confidence 34567777777666 566778787 5567777777666544433 566666655444 566777665 5566554410
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC-CCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD-INASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~-h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
. ......-....|..+.-..+| .+-.|+..|..+.--.+.+-.....+.+ .-+.|.++....+|. +.+++.+|
T Consensus 237 ~----sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~g 310 (671)
T COG3292 237 A----SNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGG 310 (671)
T ss_pred c----cccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCc
Confidence 0 000001112334444333333 4666777765433222222111111111 224556666666664 55666666
Q ss_pred eEEEEECCCCeEEEEee-cCCc-eEEEEEeC---CCEEEEEeCCCeEEEEECCCCEEEEEEecCC-CceEEEee-cCCEE
Q psy3053 779 MLNVYDLTTGMQVCNKV-FEEK-LLCLSWAG---EEKVILGGALGMVYLVDLIQVQLLKQVRAHK-DAVLSLHF-DNCTM 851 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~-~~~~-i~~l~~s~---~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~-dg~~L 851 (917)
.+++-+.. -.....+. .++. +...+..+ +..+....+.|.+.+-+-.++..+.....-. ..|+.... .+..+
T Consensus 311 iv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~l 389 (671)
T COG3292 311 IVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRL 389 (671)
T ss_pred eEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcE
Confidence 55554321 11111111 1111 11111122 1123334444555555666666555532222 22322211 24445
Q ss_pred EEEeCCCeEEEEECcC-CeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3053 852 LVGCWDSCVVIYDVEC-GRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 852 asgs~DG~I~Iwdl~t-g~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~I 904 (917)
-.|+...-+..|+..+ +..+....+ ..++|.++.=.|+++ |..|+.+|.++.
T Consensus 390 Wlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 390 WLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 5566654466677665 444444333 356788888889888 778888887654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.39 E-value=15 Score=41.69 Aligned_cols=153 Identities=15% Similarity=0.059 Sum_probs=96.3
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCc----eE-EEE-EeCCCEEEEEeCCCeEEEE-
Q psy3053 754 DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEK----LL-CLS-WAGEEKVILGGALGMVYLV- 823 (917)
Q Consensus 754 ~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~----i~-~l~-~s~~~~lv~gs~dG~I~vw- 823 (917)
.....|..+-..|||+.+..-+. ..+.++++.+.......-. ++. ++ .+. .++.-.+++++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 44567888899999999887765 6788888866543222111 111 11 111 2344468899999998888
Q ss_pred ECCCC-----EEEEEEecCCCceEEEeec--CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q psy3053 824 DLIQV-----QLLKQVRAHKDAVLSLHFD--NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896 (917)
Q Consensus 824 dl~~~-----~~i~~l~~h~~~V~sis~d--g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg 896 (917)
|.+.+ ..++.++-....+..+.|+ .+-+++-+..|++.++.....+.+-.-. --..+.-+++||.+.+|++-
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e 375 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE 375 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheee
Confidence 54432 2233333344556666554 4457888889999888765444432222 22356778999999999875
Q ss_pred eCCCcEEEEecCc
Q psy3053 897 NLVGAPKLYATEF 909 (917)
Q Consensus 897 s~DG~V~IWdl~~ 909 (917)
..|.++++.++.
T Consensus 376 -~~gki~~~~l~N 387 (733)
T COG4590 376 -DQGKIRLAQLEN 387 (733)
T ss_pred -cCCceEEEEecC
Confidence 346788888864
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=82.76 E-value=1e+02 Score=37.58 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=87.3
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
-.|+|++.. |+.+..+.-..+.+-.+.|+.+ ..|+....||++.++++........ .. ........|.-+.+..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~---sv-g~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESN---SV-GFESQMSDIVECRFFH 137 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccc---cc-ccccccCceeEEEEec
Confidence 457777764 5555554444447889999965 5667778999999999865411100 00 0011122333333333
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe--EEEEEecCCC---EEEEEe-CCC-eEEEEECCCCeEEEEeec
Q psy3053 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV--NGVLFSEDGC---RVLSCG-NNC-MLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 724 dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V--~~v~fspdg~---~L~s~s-~Dg-~I~iwDl~tg~~i~~~~~ 796 (917)
+| +++-..+|.+.+-.-.....+..+..-..... .|-...+++. .++-.. ..+ .+..-+..+.+.......
T Consensus 138 ~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 44 34444455555443222222333332111111 2222222211 111111 000 001111111111111122
Q ss_pred CCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEe
Q psy3053 797 EEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 797 ~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~ 835 (917)
.+.+.-++.+++. .++.-+..|.|.+.+....+....+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3566777788654 56667788999988887666655554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=82.41 E-value=89 Score=34.93 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=55.6
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCce---eeee----eccccceEEEEEeCC----CCEEEEEecc--------
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQ---ERSA----VLSSMTLSSLCILPD----NCTMLVGCWD-------- 643 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~---~~~~----~~~~~~V~sl~~spd----~~~Lasgs~D-------- 643 (917)
-++|+|.|||+.++ +...|.|.+++ .++.. +..+ .........++++|+ +...++.+..
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 47899999987655 56699999999 44433 1111 123456788999994 3333333321
Q ss_pred cEEEEEEeccC-------ee-eEEecc---CCCceeEEEecCCCCEEEEEECC
Q psy3053 644 SCVVIYDVECG-------RI-VTELAG---HEDAISCVAWDEKRKRLISGSWD 685 (917)
Q Consensus 644 g~I~Iwdl~tg-------~~-i~~l~~---H~~~Vt~l~~spd~~~L~Sgs~D 685 (917)
..|.-|....+ +. +..+.. ....-..|+|.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 24555555443 11 112222 23345679999999776666543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=82.07 E-value=92 Score=34.84 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=58.5
Q ss_pred CeEEEEECCCCeEEEEeecCC---ceEEEEEeCCCEEEEEeCC------CeEEEEECCCC--E--EEEEEec-----CCC
Q psy3053 778 CMLNVYDLTTGMQVCNKVFEE---KLLCLSWAGEEKVILGGAL------GMVYLVDLIQV--Q--LLKQVRA-----HKD 839 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~~~~---~i~~l~~s~~~~lv~gs~d------G~I~vwdl~~~--~--~i~~l~~-----h~~ 839 (917)
..+.+||..+.+-........ .-.+++..++..++.|+.+ ..+..+++... + .+..+.. +..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 468889987765443322221 1233344444456666643 12445554222 2 2222211 011
Q ss_pred --ceEEEeecCCEEEEEeCC----------------------CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q psy3053 840 --AVLSLHFDNCTMLVGCWD----------------------SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 840 --~V~sis~dg~~Lasgs~D----------------------G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaS 895 (917)
....+..++++.+.|+.+ ..+.+||.++.+....-.-....-...+..-+++.++.
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~ 327 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLI 327 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEE
Confidence 111335678888888753 14678887765432211111111122233446778888
Q ss_pred EeCCC
Q psy3053 896 GNLVG 900 (917)
Q Consensus 896 gs~DG 900 (917)
||.+.
T Consensus 328 GG~~~ 332 (346)
T TIGR03547 328 GGENS 332 (346)
T ss_pred eccCC
Confidence 87653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=82.06 E-value=1.4e+02 Score=38.79 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=13.3
Q ss_pred EEEEEecccEEEEEEeccCee
Q psy3053 636 TMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
++|..--||++++=|..+.+.
T Consensus 411 y~AvsPvdgtlyvSdp~s~qv 431 (1899)
T KOG4659|consen 411 YIAVSPVDGTLYVSDPLSKQV 431 (1899)
T ss_pred EEEecCcCceEEecCCCcceE
Confidence 566666677777776665443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=81.70 E-value=94 Score=34.73 Aligned_cols=175 Identities=10% Similarity=0.096 Sum_probs=84.1
Q ss_pred CCCEEEEEECC-------CeEEEEECCCCeeeEEecCC--CCC-CeEEEEEecCCCEEEEEeCC-----CeEEEEECCCC
Q psy3053 724 DNNQLAVGTEA-------GELIIWSLENHLMTQQLSDD--INA-SVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTG 788 (917)
Q Consensus 724 dg~~Lasgs~d-------G~I~iwDl~~~~~~~~l~~~--h~~-~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg 788 (917)
++.+++.|+.+ ..+.+||+.+.+-....... ... .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 35566666652 25778888775433211100 010 11111122255666676643 35788998876
Q ss_pred eEEEEeec-----CC--ceEEEEEeCCCEEEEEeCC-----------CeEEEEECCCCEEEEEEe-----cCCCceEEEe
Q psy3053 789 MQVCNKVF-----EE--KLLCLSWAGEEKVILGGAL-----------GMVYLVDLIQVQLLKQVR-----AHKDAVLSLH 845 (917)
Q Consensus 789 ~~i~~~~~-----~~--~i~~l~~s~~~~lv~gs~d-----------G~I~vwdl~~~~~i~~l~-----~h~~~V~sis 845 (917)
+-...... +. .-.+++...+..++.|+.+ ..+.+||..+.+-...-. ..........
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~ 191 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV 191 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE
Confidence 54322111 11 1223344455456666643 257788887765432111 0111122234
Q ss_pred ecCCEEEEEeCC-------------CeEEEEECcCCeEEEEec-C--CCCCEEEEEEcCCCCEEEEEeC
Q psy3053 846 FDNCTMLVGCWD-------------SCVVIYDVECGRIVTELA-G--HEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 846 ~dg~~Lasgs~D-------------G~I~Iwdl~tg~~l~~l~-~--h~~~V~slafSpdg~~LaSgs~ 898 (917)
.++++.+.|+.+ ..+.+||..+.+....-. + ........+...+++.++.||.
T Consensus 192 ~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 192 VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcc
Confidence 577776665532 458889988776543211 0 1111111122235677777774
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.40 E-value=6.5 Score=44.39 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=98.6
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-ee-ecccc----ceE-EEEEeCCCCEEEEEecccEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-SA-VLSSM----TLS-SLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-~~-~~~~~----~V~-sl~~spd~~~Lasgs~Dg~I 646 (917)
..+..--..|..+-..|||+.+..-+. ..+.++++.+..... .+ ....+ .|+ ++.....|..+.+++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 335555677888999999998877654 678888876543221 11 11111 122 12223456778888999998
Q ss_pred EEE-EeccC-e----eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 647 VIY-DVECG-R----IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 647 ~Iw-dl~tg-~----~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
.-| |+..+ . .++.++-....+..+.-..+.+-+++-+..|++.++..... ...-....-..+..++
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~--------~~lL~~~~~~~~~~~~ 364 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE--------KLLLFERAYQAPQLVA 364 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC--------cceehhhhhcCcceee
Confidence 887 44322 2 12222222344554444445567888888899988875433 1111122223567789
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCee
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLENHLM 747 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~~~~~ 747 (917)
+||.+.++++- ..|.++++.+++..+
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCCC
Confidence 99999988874 457799988876544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=80.89 E-value=70 Score=35.69 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=62.9
Q ss_pred cceEEEEEeCCCCEEEEEecccE------EEEEEecc--C--eeeE-----EeccCCC--------ceeEEEecCCCCEE
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSC------VVIYDVEC--G--RIVT-----ELAGHED--------AISCVAWDEKRKRL 679 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~------I~Iwdl~t--g--~~i~-----~l~~H~~--------~Vt~l~~spd~~~L 679 (917)
+.++.+.+.+++..+++.+.+|. +...++.. + ..+. .+..-.+ ..-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888866666666676666 55555443 1 0111 1111111 33477887788888
Q ss_pred EEEECC------CeEEEEeCCCCCCCccCCccee-------eeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 680 ISGSWD------CTVRVWNTGASWSHMKPSKSLV-------SQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 680 ~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
++.-.+ ..|..++............... ..........+++++|+|+.|+++.+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 877667 7788887652211100011111 22345667899999999997666543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=80.78 E-value=1.1e+02 Score=34.86 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=110.1
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEE----eCCCCE--EEEEec-c---cEEEEEEecc--Ceee
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI----LPDNCT--MLVGCW-D---SCVVIYDVEC--GRIV 657 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~----spd~~~--Lasgs~-D---g~I~Iwdl~t--g~~i 657 (917)
|..++|+.+.+++-+.+||++ |+.++.+.. +....+.. .-.++. |++++. + .+|++|.++. +..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L- 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL- 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-
Confidence 455688888899999999987 455555432 22232222 113432 444443 2 5799998863 433
Q ss_pred EEecc-------CCCceeEEEe--cC-CCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 658 TELAG-------HEDAISCVAW--DE-KRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 658 ~~l~~-------H~~~Vt~l~~--sp-d~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
..+.. -...+..+|+ ++ +|. +.+..+.+|.+..|.+...... .............+.+..+.......
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g-~v~~~lVR~f~~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG-KVSATLVREFKVGSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-SEEEEEEEEEE-SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-cEeeEEEEEecCCCcceEEEEecccC
Confidence 33221 1234667776 33 344 6667788999999987532111 11123444556677899999999999
Q ss_pred EEEEEECCCeEEEEECCC-----CeeeEEecC-CCCCCeEEEEEec--CCC-EE-EEEeCCCeEEEEECCC
Q psy3053 727 QLAVGTEAGELIIWSLEN-----HLMTQQLSD-DINASVNGVLFSE--DGC-RV-LSCGNNCMLNVYDLTT 787 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~-----~~~~~~l~~-~h~~~V~~v~fsp--dg~-~L-~s~s~Dg~I~iwDl~t 787 (917)
.|..|-++.-|.-|+.+. ++.+..... .....|..+++-. +|+ +| ++.-.+++..+|+...
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999998888888762 222322221 2446788887753 332 44 4444577899999764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=1e+02 Score=34.50 Aligned_cols=269 Identities=11% Similarity=0.077 Sum_probs=129.6
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeEEec----cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCC
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVTELA----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~----~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~ 696 (917)
...+.+++|..+..-+++|. +|.| |...+ |+.-.... .....+.++.+.++ ..+++ +..|.| +....+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCC
Confidence 44677788876566666664 4433 43332 32211111 12234677877643 33443 445543 333332
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
......... ..........+.....+...++ +..|.|.. ..+.|+.-..+.....+.+.++.+.|++..++++ .
T Consensus 118 G~tW~~~~~---~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~ 191 (334)
T PRK13684 118 GKNWTRIPL---SEKLPGSPYLITALGPGTAEMA-TNVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-S 191 (334)
T ss_pred CCCCeEccC---CcCCCCCceEEEEECCCcceee-eccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-C
Confidence 211111100 0001111122222222333333 44454432 2334444444443446678999999988666554 4
Q ss_pred CCeEEE-EECCCCeEEEEe--ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec----CCCceEEE--eec
Q psy3053 777 NCMLNV-YDLTTGMQVCNK--VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA----HKDAVLSL--HFD 847 (917)
Q Consensus 777 Dg~I~i-wDl~tg~~i~~~--~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~----h~~~V~si--s~d 847 (917)
.|.+.. +| ..++..... .....+.++.+.+++.+++.+..|.+++-....+..-..... ....+.++ .++
T Consensus 192 ~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 192 RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 554443 22 122222222 234567888888877777777778775433444432222111 12335555 334
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELA---GHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~---~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+. +++++.+|.|. .....|+.-.... .-......+.|..+++.++ .+..|.|--|+=
T Consensus 271 ~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 271 GE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 55 45555677554 4445454433332 2223577788876665544 567788877653
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.62 E-value=55 Score=33.74 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=88.7
Q ss_pred CCcEEEEEec--CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-EecccEEEEEEeccCeeeEEeccCCCce
Q psy3053 591 EGISVASVGR--DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAI 667 (917)
Q Consensus 591 dg~~Lasgs~--Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg~I~Iwdl~tg~~i~~l~~H~~~V 667 (917)
+|.++.+++. ...|++||+.+|+.+.+.......+..=-...-+..+.. .-.+|.-..+|.++-+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4566666665 346999999999887765544211111001111233333 33478888889888777665542 2333
Q ss_pred eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce---EEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 668 SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI---KCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V---~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
+.++- |+..|+.++...++..-|..+-.. ...+ .......+| .-+.|- +|...|-.-.+..|...|..+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~----~~~v-~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAE----LDTV-QVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhh----cceE-EEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence 44443 455566665555666656443210 0000 011111111 112221 344444444444555556666
Q ss_pred CeeeEEec-----------CCCCCCeEEEEEecCCCEEEEE
Q psy3053 745 HLMTQQLS-----------DDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 745 ~~~~~~l~-----------~~h~~~V~~v~fspdg~~L~s~ 774 (917)
|+.+..+. ..+..-.+.+++.|++..++..
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 66554432 1234567788998877544443
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=80.62 E-value=85 Score=39.43 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=51.8
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe----cC--------------CCCCCeEEEEEecCCCEEEE
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL----SD--------------DINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l----~~--------------~h~~~V~~v~fspdg~~L~s 773 (917)
....|.+++...-+..++.+..||+|.++|..+.+.+... .. +....+..++|||.+..++.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 4567888888888889999999999999998876554433 10 11123445889999999998
Q ss_pred EeCCCeEE
Q psy3053 774 CGNNCMLN 781 (917)
Q Consensus 774 ~s~Dg~I~ 781 (917)
...+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888755
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=80.52 E-value=0.21 Score=56.49 Aligned_cols=141 Identities=17% Similarity=0.198 Sum_probs=97.7
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEE--EEE
Q psy3053 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQL--LKQ 833 (917)
Q Consensus 758 ~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~--i~~ 833 (917)
..-...|-+.+.-++.++.+..+..||- .|+.......++....++|+-++ .++.+-..+.+.+||+.+... +..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3445567787777888888888999984 46666666667777788887543 456677889999999975421 111
Q ss_pred EecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 834 VRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 834 l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
--.|.......++.+..++.|...|.+.|++-.+.+.+...-.|..++++++|.+.+ +.+.++.|.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 111223333335567778888889999999988777766665699999999999976 444444443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=80.13 E-value=1.1e+02 Score=34.33 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=27.3
Q ss_pred CCCCEEEEEecc-----------cEEEEEEeccCeeeEEeccCCCceeE--EEecCCCCEEEEEECC
Q psy3053 632 PDNCTMLVGCWD-----------SCVVIYDVECGRIVTELAGHEDAISC--VAWDEKRKRLISGSWD 685 (917)
Q Consensus 632 pd~~~Lasgs~D-----------g~I~Iwdl~tg~~i~~l~~H~~~Vt~--l~~spd~~~L~Sgs~D 685 (917)
-++++.+.|+.+ ..+..||..+.+-...-........+ .+..-+++..+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 467777777753 24777887765433221111111111 1112366777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 917 | ||||
| 1t77_A | 414 | Crystal Structure Of The Ph-Beach Domains Of Human | 1e-85 | ||
| 1mi1_A | 414 | Crystal Structure Of The Ph-Beach Domain Of Human N | 2e-81 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-16 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-16 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 9e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 9e-16 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 9e-16 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-15 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-15 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-15 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-15 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-15 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-15 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-15 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-15 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-15 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-15 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-12 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-05 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-11 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 5e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-06 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 7e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 7e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-05 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 2e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 6e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 6e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-04 |
| >pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414 | Back alignment and structure |
|
| >pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 917 | |||
| 1t77_A | 414 | Lipopolysaccharide-responsive and beige-like ancho | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.78 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.77 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.73 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.69 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.67 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.65 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.64 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.6 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.59 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.55 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.52 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.51 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.5 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.47 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.46 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.45 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.43 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.41 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.4 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.35 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.34 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.32 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.29 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.25 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.24 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.23 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.2 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.2 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.19 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.16 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.15 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.15 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.13 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.1 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.08 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.07 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.07 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.06 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.03 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.01 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.01 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.01 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.0 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.95 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.93 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.91 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.88 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.88 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.86 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.85 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.84 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.79 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.79 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.73 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.68 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.66 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.66 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.64 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.58 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.55 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.53 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.5 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.48 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.48 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.47 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.45 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.41 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.34 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.33 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.19 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.15 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.15 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.13 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.13 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.12 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.12 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.09 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.05 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.03 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.02 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.97 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.91 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.89 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.82 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.8 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.77 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.74 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.7 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.69 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.68 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.68 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.67 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.66 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.65 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.56 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.56 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.49 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.47 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.26 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.24 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.23 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.2 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.18 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.17 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.17 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.13 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.11 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.11 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.08 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.04 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.96 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.91 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.86 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.83 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.81 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.8 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.77 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.66 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.65 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.61 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.58 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.51 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.5 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.4 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.38 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.23 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.2 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.16 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.98 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.93 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.9 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.8 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.8 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.55 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.39 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.32 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.31 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.3 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.23 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.18 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.66 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.2 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.97 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.93 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.69 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.19 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.84 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.67 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 90.83 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 89.85 | |
| 1lw3_A | 657 | Myotubularin-related protein 2; protein-phosphate | 89.07 | |
| 1zsq_A | 528 | Myotubularin-related protein 2; protein-phospholip | 87.67 | |
| 1pfj_A | 108 | TFIIH basal transcription factor complex P62 subun | 86.62 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 85.91 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 84.8 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 84.68 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 83.17 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 82.4 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 81.59 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 80.43 | |
| 2yf0_A | 512 | Myotubularin-related protein 6; hydrolase; 2.65A { | 80.02 |
| >1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-125 Score=1032.14 Aligned_cols=380 Identities=47% Similarity=0.766 Sum_probs=352.6
Q ss_pred ceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCC------CC-------ceEEEEeccccceeeeccccCcceEEEEE
Q psy3053 157 KVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNI------EP-------HKLLKVRLAGIKRIIRRRFLLQQVGIEIY 223 (917)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~------~~-------~~~~~~~~~~i~~~~~r~~~~~~~~~e~~ 223 (917)
+++++++|++|+|+++.+|+|.||++.|||+|.+.. +. ....+|++++|++|++|||+||++|||||
T Consensus 2 ~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rryll~~~alEif 81 (414)
T 1t77_A 2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF 81 (414)
T ss_dssp CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeeccCcceeEEEE
Confidence 578899999999999999999999999999985421 11 11247999999999999999999999999
Q ss_pred EecCCCceeEEEecCChhhHHHHHHHHhCCcc------c---ccc--c----chhHHHHHHHHcCCCChHHHHHHhhhcc
Q psy3053 224 FKDLEPVKYLYLTLKTQGARDTLYNALLDLPE------L---QLS--H----SDQEIMTLRWQNGALSNYDYLMYLNSLA 288 (917)
Q Consensus 224 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~------~---~~~--~----~~~~~~~~~w~~~~isnf~yl~~ln~~~ 288 (917)
+.+| +++||+|.+++.++++++.+..... + .+. . ....++|++|++|+||||||||+||++|
T Consensus 82 ~~~g---~s~~l~F~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~iSNFeYLm~LN~~a 158 (414)
T 1t77_A 82 MANR---VAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIA 158 (414)
T ss_dssp ETTS---CEEEEECSSHHHHHHHHHHSCSCTTCSTTSCCCCTTTTTCCHHHHHHHCSHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred EcCC---cEEEEEcCCHHHHHHHHHhccccccccccCCccccccccCCHHHHhhhhhHHHHHhcCCccHHHHHHHHHHHc
Confidence 9998 8999999999889999988753210 0 011 0 1234699999999999999999999999
Q ss_pred CCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHHHHccCC---CCCcccCCCCCChhhHhh
Q psy3053 289 DRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMP---HPKFLYGSHYSTPGFVLF 365 (917)
Q Consensus 289 grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~~~~~~~---~~~~~y~~~ys~~~~v~~ 365 (917)
|||||||+|||||||||+||+|++|||+||++||||||||||||++|++.|++||+++. .|+||||||||+|++|++
T Consensus 159 GRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~~~~~~~f~ygshyS~~~~V~~ 238 (414)
T 1t77_A 159 GRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLA 238 (414)
T ss_dssp TCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCCSSSCCCSBSSCSCCHHHHHH
T ss_pred CCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhcccCCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999884 589999999999999999
Q ss_pred hhcccCchh--HHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccCCCCCcccccccCCCCCccccCCceeCC
Q psy3053 366 YLVRKFPQY--MLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGG 443 (917)
Q Consensus 366 ~l~r~~p~~--~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~~~~~~~fl~n~~~~~~g~~~~~~~~~d 443 (917)
||+|+|||+ +++||+|+||+|||||+||+++|++|+++++|||||||||||+ ||||+|.|+++||++|+|+.|+|
T Consensus 239 yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~~~~~d~kElIPEFf~~---Pe~l~N~n~~~lG~~~~g~~v~D 315 (414)
T 1t77_A 239 WLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYL---PEMFVNFNNYNLGVMDDGTVVSD 315 (414)
T ss_dssp HHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTC---GGGGSCTTCCCCCBCTTSCBCSS
T ss_pred HHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHhccCCCccccCchhhcC---hHhhccccCCccccccCCCCCCc
Confidence 999999974 7899999999999999999999999999999999999999986 59999999999999999999999
Q ss_pred eecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCccceeeeccccccCcccChHHHHHHHHH
Q psy3053 444 VQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQ 523 (917)
Q Consensus 444 v~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~f~~l~yeg~v~~~~i~d~~~r~a~e~~ 523 (917)
|+|||||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||++|+|++|++.+.|+.+|.+++++
T Consensus 316 V~LP~Wa~sp~~FI~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~~~a~~~~ 395 (414)
T 1t77_A 316 VELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQ 395 (414)
T ss_dssp CBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHH
T ss_pred eeCCCCCCCHHHHHHHHHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCccccccCCCCCc
Q psy3053 524 IMEFGQIPKQIFHSPHPRR 542 (917)
Q Consensus 524 i~~fGQ~P~qLF~~pHP~r 542 (917)
+.+|||+|.|||.+|||+|
T Consensus 396 i~~fGQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 396 IRSFGQTPSQLLIEPHPPR 414 (414)
T ss_dssp HHHHCCCCCCCCSSCCCCC
T ss_pred HHHcCCChhhhhcCCCCCC
Confidence 9999999999999999987
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=407.78 Aligned_cols=346 Identities=16% Similarity=0.212 Sum_probs=282.8
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce--eee----------------------
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ--ERS---------------------- 617 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~---------------------- 617 (917)
.+|+... .+....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...
T Consensus 42 ~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 42 YTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp EEEETTC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEecCCC-cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEE
Confidence 5677543 356778899999999999999999999999999999999864321 111
Q ss_pred ----------------------eeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecC
Q psy3053 618 ----------------------AVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 618 ----------------------~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp 674 (917)
+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+.+|.+.|++++|+|
T Consensus 121 ~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred EECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence 234556677788888776 599999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-- 752 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-- 752 (917)
++++|++|+.|++|++||+.++..............+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 999999999999999999877621100000000112799999999999999999999999999999999877654331
Q ss_pred ----------------------------------------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 753 ----------------------------------------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 753 ----------------------------------------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
.+|...|.+++|+|+|++|++++.|++|++||+.++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 2688899999999999999999999999999998765432
Q ss_pred Ee------------------------------------------------------------------------------
Q psy3053 793 NK------------------------------------------------------------------------------ 794 (917)
Q Consensus 793 ~~------------------------------------------------------------------------------ 794 (917)
..
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 21
Q ss_pred -----ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEE--EEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEE
Q psy3053 795 -----VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQL--LKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 795 -----~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~--i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwd 864 (917)
.+...+.+++++|++ .+++|+.||.|++||+.++.. ... .+|...|.++ +|+|++|++++.|++|++|+
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 012335678888776 477899999999999987754 334 6899999998 67999999999999999999
Q ss_pred CcC-CeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VEC-GRIVTE--LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~t-g~~l~~--l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.+ ++.... +.+|...|.+++|+|||++||||+.||+|++|+++.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 988 666543 345999999999999999999999999999999975
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=407.69 Aligned_cols=343 Identities=15% Similarity=0.198 Sum_probs=291.1
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg 640 (917)
.+|+.. +....+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++|
T Consensus 132 ~~wd~~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 132 FLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeeCC---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 467742 34567899999999999999987 59999999999999999998889999999999999999999999999
Q ss_pred ecccEEEEEEeccCeeeEEec-------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc------------
Q psy3053 641 CWDSCVVIYDVECGRIVTELA-------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------------ 701 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l~-------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------------ 701 (917)
+.|++|++||+.+++....+. +|.+.|.+++|+|++++|++|+.|++|++||+.++.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999999888874 7999999999999999999999999999999986531100
Q ss_pred ------------------------CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC---
Q psy3053 702 ------------------------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD--- 754 (917)
Q Consensus 702 ------------------------~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~--- 754 (917)
.........+|...|.+++|+|+|++|++|+.||.|++||+.++.....+...
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 00012234578999999999999999999999999999999876543322100
Q ss_pred ------------------------------------------------------------------------------CC
Q psy3053 755 ------------------------------------------------------------------------------IN 756 (917)
Q Consensus 755 ------------------------------------------------------------------------------h~ 756 (917)
+.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 12
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE--EEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCC-CEEEE
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ--VCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQ-VQLLK 832 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~--i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~-~~~i~ 832 (917)
..+.+++|+|+|++|++|+.|++|++||+.++.. .....+...|.+++|+|++ .+++++.|+.|++|++.+ ++...
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 3467899999999999999999999999987754 2345688899999999876 477899999999999987 66554
Q ss_pred E--EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe-EE-EEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3053 833 Q--VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR-IV-TELAGH-EDAISCVAWDEKRKRLISGNLVGAPKLY 905 (917)
Q Consensus 833 ~--l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~-~l-~~l~~h-~~~V~slafSpdg~~LaSgs~DG~V~IW 905 (917)
. ..+|...|.++ +|||++|++|+.||+|++||+.++. .. ..+.+| .+.|.+++|+|+++ |++|+.||+|++|
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 3 34599999998 6699999999999999999998765 33 667889 89999999999998 9999999999999
Q ss_pred ecC
Q psy3053 906 ATE 908 (917)
Q Consensus 906 dl~ 908 (917)
++.
T Consensus 608 ~~~ 610 (611)
T 1nr0_A 608 NVP 610 (611)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=388.49 Aligned_cols=307 Identities=14% Similarity=0.186 Sum_probs=273.5
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...+.+|.++|++++|+|+++++++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
+++++..+.+|...|++++|+|++++|++|+.|++|++||+.++ .......+|...|.++++++++.++++|+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999876 34455678999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
.||.|++||+.+++....+. .|...|.+++|+|++.+.......+. .......+...++
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGS--------------------ETKKSGKPGPFLL 312 (410)
T ss_dssp TTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSC--------------------C-------CCEEE
T ss_pred CCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccc--------------------cccccCCCCCEEE
Confidence 99999999999999888887 89999999999997643211111000 0000111234789
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+|+.||.|++||+.++.++..+.+|...|.++ ++++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 99999999999999999999999999999988 5689999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEec
Q psy3053 891 KRLISGNLVGAPKLYAT 907 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl 907 (917)
.+|+||+.||+|++|++
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=366.61 Aligned_cols=290 Identities=17% Similarity=0.287 Sum_probs=260.1
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
.+....+.+|.+.|++++|+|+|++|++|+.||+|++||..+++.+..+..|...|.+++|+|+++++++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 650 DVECG----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 650 dl~tg----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
++.++ +....+.+|.+.|.+++|++++ .+++++.|++|++||+.++ .......+|...|.+++|+|++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG-------QQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTS
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC-------cEEEEEcCCCCceEEEEECCCC
Confidence 99875 4567788999999999999876 5899999999999999876 3444566899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~ 805 (917)
+++++|+.||.|++||++++.....+. +|...|.+++|+|+++.+++++.||+|++||+++++.+....+.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-------- 267 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-------- 267 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--------
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC--------
Confidence 999999999999999999999988887 89999999999999999999999999999999887654332211
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 806 AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 806 s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
.+...|.++ +|+|+++++|+.||.|++||+.+++.+..+.+|.++|.+
T Consensus 268 ------------------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 317 (340)
T 1got_B 268 ------------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317 (340)
T ss_dssp ------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ------------------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEE
Confidence 122345555 568999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWd 906 (917)
++|+|+|.+|+||+.||.|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=388.75 Aligned_cols=329 Identities=20% Similarity=0.299 Sum_probs=294.5
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+.. .+.+..+.+|...|++++|+|+++.+++++.|+.|++|+. +++....+.+|...|.+++++|+++.+++++
T Consensus 246 ~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 246 KLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp EEECTT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCC--CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 578743 3567788999999999999999999999999999999996 4677788889999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.||.|++||... ..+..+.+|...|.+++|+|+++.|++|+.||+|++||.... .......|...|.+++|
T Consensus 323 ~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--------~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 323 DDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp TTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC--------EEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC--------EEEEecCCCCCeEEEEE
Confidence 999999999764 456778899999999999999999999999999999996432 44556788999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
+|+++++++|+.||.|++||. +++.+..+. .|...|.+++|+|+++.|++++.|+.|++||...........+...+.
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE
Confidence 999999999999999999996 466677776 789999999999999999999999999999975544444456788899
Q ss_pred EEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC
Q psy3053 802 CLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 802 ~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
+++|+|++ .+++++.|+.|++||. +++.+..+.+|...|+++ +|++++|++|+.||.|++||. +++++..+.+|.
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence 99999876 4778899999999995 788899999999999998 679999999999999999996 688999999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 879 DAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 879 ~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+.|++++|+|||++|+|++.||+|++||
T Consensus 550 ~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=385.28 Aligned_cols=338 Identities=22% Similarity=0.332 Sum_probs=302.2
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+.. .+.+..+.+|.+.|.+++|+|+|++|++++.|+.|++|+. +++.+..+..|...|.+++|+|+++.+++++
T Consensus 205 ~~w~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 205 KLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp EEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCC--CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEe
Confidence 577742 3567788999999999999999999999999999999995 5677888889999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|+.|++|+. +++....+.+|.+.|.+++|+|+++.+++++.|++|++||.... ......+|...+.++++
T Consensus 282 ~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 282 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAF 352 (577)
T ss_dssp TTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEE
Confidence 9999999996 46778889999999999999999999999999999999997654 44556788999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCce
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKL 800 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i 800 (917)
+|+++.+++|+.||.+++||. +++.+..+. .|...|.+++|+|+|++|++++.|+.|++||.. ++.+. ...+...+
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v 429 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 429 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCE
T ss_pred CCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCe
Confidence 999999999999999999996 466777776 789999999999999999999999999999965 44444 44577889
Q ss_pred EEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 801 LCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 801 ~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.+++++|++ .+++++.|+.|++||. +++.+..+.+|...|.++ +|++++|++++.|+.|++||. +++++..+.+|
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence 999999865 5778999999999996 677888999999999988 679999999999999999995 68899999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEEEe
Q psy3053 878 EDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~Lt 916 (917)
...|++++|+|+|++||+++.||.|++||..+..+..+.
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEc
Confidence 999999999999999999999999999999888777653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=362.59 Aligned_cols=288 Identities=18% Similarity=0.235 Sum_probs=259.2
Q ss_pred eeeeccCCcceEEEEEeCC----CcEEEEEecCCceEEEeccCCce--eeeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 573 LHFCHSHKEAITAVAICGE----GISVASVGRDAMLKIHSLKTGRQ--ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~--~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
...+++|.+.|++++|+|+ +.+|+||+.|++|++|++.+++. ...+.+|...|.++++++++..+++|+.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4566899999999999985 57899999999999999987654 44678899999999999999999999999999
Q ss_pred EEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 647 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|++.++ ........+...|.+++|+|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-------KKEYSLDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-------SEEEEEECSSSCEEEEEECTTSS
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-------ceeEEecCCCceEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999876 23444567788899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s 806 (917)
+|++|+.||.|++||+++++.+..+. +|...|.+++|+|++++|++++.|+.|++||++++..
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~---------------- 240 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL---------------- 240 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----------------
Confidence 99999999999999999999998887 8899999999999999999999999999998876532
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 884 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl 884 (917)
...+.+|...|.++ +|++.+|++|+.||+|++||+.+++++..+.+|.+.|.++
T Consensus 241 ------------------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 241 ------------------------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296 (321)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ------------------------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence 33456788888887 5689999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 885 AWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 885 afSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+|+|++++|++++.||.|++||..
T Consensus 297 ~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 297 KYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECTTSSEEEEEETTCCEEEEECC
T ss_pred EECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999964
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=369.31 Aligned_cols=324 Identities=15% Similarity=0.198 Sum_probs=285.2
Q ss_pred eccCCcceEEEEEeCCCc-EEEEEecCCceEEEec----cCCc------eeeeeec----------cccceEEEEEeCCC
Q psy3053 576 CHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSL----KTGR------QERSAVL----------SSMTLSSLCILPDN 634 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~----~t~~------~~~~~~~----------~~~~V~sl~~spd~ 634 (917)
...|.+.|++++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |...|.+++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345679999999999999 9999999999999999 8887 3444443 57799999999999
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
++|++|+.||.|++|| .+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++. .......+..
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~ 192 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-------VMQHFELKET 192 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-------EEEEECCC--
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-------EEEEeecccc
Confidence 9999999999999999 6788889999999999999999999999999999999999997762 2222223333
Q ss_pred c---------------eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 715 R---------------IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 715 ~---------------V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
. +.+++|++++ .+++++.+|.|++||+.+++....+. .|...|.+++|+|+++.+++++.||.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp -------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCE
Confidence 3 8999999875 58889999999999999998888887 78999999999999999999999999
Q ss_pred EEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC
Q psy3053 780 LNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW 856 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~ 856 (917)
|++||+.+++...... +...+.+++|++++.+++++.+|.|++||+.+++.+..+..|...+.++ ++++++|++|+.
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp EEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence 9999999887766654 6788999999998899999999999999999999999999999999988 568999999999
Q ss_pred CCeEEEEECcCCe--------------------EEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 857 DSCVVIYDVECGR--------------------IVTELAGHED--AISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 857 DG~I~Iwdl~tg~--------------------~l~~l~~h~~--~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|++++
T Consensus 351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 9999999999888 8999999976 999999999999999999999999999874
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=355.23 Aligned_cols=293 Identities=17% Similarity=0.236 Sum_probs=255.3
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
++...++.+|.+.|++++|+|+|++|++|+.||+|++||+.++..++.+..|..+|.+++|+|++++|++|+.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L 728 (917)
|+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++. .......+|...|.+++|+| ++..+
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------EEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------chhhhhcccCCcEEEEEECCCCCCEE
Confidence 999999999999999999999999999999999999999999987641 12334568999999999999 67899
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s 806 (917)
++|+.||+|++||++++.....+...+...+..+.|+| ++.+|++++.|++|++||++++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------------------ 218 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------------------ 218 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------------------
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------------------
Confidence 99999999999999988777766656777888888876 5566777777766666666544
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 884 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl 884 (917)
+++..+.+|...|.++ +|++.+|++|+.||+|++||+.+++.+..+..|...+.++
T Consensus 219 ----------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 219 ----------------------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp ----------------------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred ----------------------ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence 4455667888888877 6688999999999999999999999999999999999999
Q ss_pred EEcCCCC--EEEEEeCCCcEEEEecCc
Q psy3053 885 AWDEKRK--RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 885 afSpdg~--~LaSgs~DG~V~IWdl~~ 909 (917)
+|+|++. ++++|+.|| +.+|++..
T Consensus 277 ~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 277 ATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999875 577776665 77887754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=360.31 Aligned_cols=290 Identities=18% Similarity=0.288 Sum_probs=258.0
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+....+.+|.+.|++++|+|++++|+||+.||+|++||..+++....+..+...|.+++|+|++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eccC------eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-
Q psy3053 651 VECG------RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK- 723 (917)
Q Consensus 651 l~tg------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 723 (917)
+... .....+.+|.+.|.+++|+|++..|++|+.|++|++||+.++ .......+|...|.+++++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------QLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECCC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEcCCCCCeEEEEEEeC
Confidence 8653 345667789999999999999999999999999999999876 34455678999999999988
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEE
Q psy3053 724 -DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC 802 (917)
Q Consensus 724 -dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~ 802 (917)
+++.+++|+.||.|++||+++++.+..+. .|...|.+++|+|++..+++++.|++|++||++++..+......
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~----- 281 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE----- 281 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-----
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----
Confidence 57899999999999999999999988887 89999999999999999999999999999999876543221110
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC
Q psy3053 803 LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA 880 (917)
Q Consensus 803 l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~ 880 (917)
.+...+.++ +++++++++|+.||.|++||+.+++.+..+.+|.+.
T Consensus 282 ---------------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~ 328 (354)
T 2pbi_B 282 ---------------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 328 (354)
T ss_dssp ---------------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred ---------------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc
Confidence 112234444 668999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 881 ISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 881 V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
|++++|+|+|++|++|+.||+|++|+
T Consensus 329 v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 329 VSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=350.38 Aligned_cols=291 Identities=22% Similarity=0.355 Sum_probs=261.1
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
.....+.+|.+.|++++|+|+|++|++|+.||.|++|+..+++....+..|...|.+++|+|++++|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||+.++ ........|...|.+++|+|+++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-------KCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------EEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999999876 234455678899999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
|+.||.|++||+++++.+..+...+...+..++|+|+++++++++.|+.|++||+.+++.+..
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------------- 229 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT----------------- 229 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-----------------
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-----------------
Confidence 999999999999999988887766778899999999999999999999999999887755432
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCce----EEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEE
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAV----LSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V----~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sla 885 (917)
+.+|...+ ... .+++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++
T Consensus 230 -----------------------~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 286 (312)
T 4ery_A 230 -----------------------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286 (312)
T ss_dssp -----------------------ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -----------------------EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence 22232221 112 24688999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEecC
Q psy3053 886 WDEKRKRLISGN--LVGAPKLYATE 908 (917)
Q Consensus 886 fSpdg~~LaSgs--~DG~V~IWdl~ 908 (917)
|+|++..|++++ .||.|++|+.+
T Consensus 287 ~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 287 CHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCcCCceEEEEccCCccEEEecCC
Confidence 999999999997 69999999975
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=351.33 Aligned_cols=299 Identities=18% Similarity=0.277 Sum_probs=255.8
Q ss_pred ccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccC-----CceeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKT-----GRQERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
+.+..++.+|.+.|++++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|.+++|+|+++++++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 45667899999999999999965 8999999999999999864 33467788999999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
++|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+... ......+|...|.+++++|
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECC
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999998643 4556678999999999998
Q ss_pred C------CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 724 D------NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 724 d------g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
. +..+++|+.||.|++||+++++....+. +|...|.+++|+|+|++|++++.||.|++||+.+++.+......
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 5 4589999999999999999999888887 89999999999999999999999999999999999988888888
Q ss_pred CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 798 EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 798 ~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
..+.+++|+|++.+++++.++.+++|++..+..+..+..+... ....|
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~--------------------------------~~~~~ 285 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG--------------------------------YSKAA 285 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTT--------------------------------CCGGG
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccc--------------------------------cccCc
Confidence 8888888888766665555566666666554443333211100 01235
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 878 EDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
...+.+++|+|||++|++|+.||.|++|++.+
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 66788999999999999999999999999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=364.76 Aligned_cols=306 Identities=19% Similarity=0.232 Sum_probs=258.3
Q ss_pred cccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEE
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVI 648 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~I 648 (917)
...+..++.+|.+.|++++|+|+|++|+||+.||+|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCe-------eeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 649 YDVECGR-------IVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 649 wdl~tg~-------~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
|++.+.. ....+.+|.+.|.+++|+|+ +..|++|+.|++|++||+.++...... ......+|...|.+++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~--~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF--GSEFPSGHTADVLSLS 212 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE--CCCSSSSCCSCEEEEE
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe--ecccCCCCccCeEEEE
Confidence 9987532 34567899999999999996 457999999999999999876211000 0001246889999999
Q ss_pred EeC-CCCEEEEEECCCeEEEEECC-CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy3053 721 ISK-DNNQLAVGTEAGELIIWSLE-NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798 (917)
Q Consensus 721 ~sp-dg~~Lasgs~dG~I~iwDl~-~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~ 798 (917)
+++ +++++++|+.||.|++||++ .+..+..+. +|.+.|.+++|+|+|..|++++.||+|++||++++..+.......
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 987 78999999999999999998 446667776 899999999999999999999999999999999887654322110
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe--
Q psy3053 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL-- 874 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l-- 874 (917)
.. ...+...|+++ +++|+++++|+.||.|++||+.+++.+..+
T Consensus 292 ~~---------------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 292 DR---------------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp SS---------------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred cc---------------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 00 00122234444 778999999999999999999999988877
Q ss_pred --cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 875 --AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 875 --~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+|.+.|++++|+|+|.+|+||+.||+|++|++.+.
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 689999999999999999999999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=354.26 Aligned_cols=312 Identities=18% Similarity=0.242 Sum_probs=254.9
Q ss_pred cccceeeeccCCc-ceEEEEEeCCCcEEEEEecCCceEEEeccCCceee---eeeccccceEEEEEeCCCCEEEEEeccc
Q psy3053 569 ILEPLHFCHSHKE-AITAVAICGEGISVASVGRDAMLKIHSLKTGRQER---SAVLSSMTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 569 ~l~~~~~l~~H~~-~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~---~~~~~~~~V~sl~~spd~~~Lasgs~Dg 644 (917)
.++++..+.+|.+ .|.+++|+|+|++||+|+.|++|++|++.++.... ...+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456788999998 99999999999999999999999999998876432 2357889999999999999999999999
Q ss_pred EEEEEEeccC--eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 645 CVVIYDVECG--RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 645 ~I~Iwdl~tg--~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
++++|++.++ +.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.... .........+|...|.+++|+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEEC
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEEC
Confidence 9999999876 4577899999999999999999999999999999999987651 112234456789999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i 800 (917)
|++++|++|+.||.|++||.+++.. ...+. +|...|.+++|+|+|++|++++.|++|++||...... ...+
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~------~~~~ 232 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN------EQGV 232 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC------TTCC
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC------Cccc
Confidence 9999999999999999999988753 34555 8999999999999999999999999999999632210 0000
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec-CCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe--------
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA-HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR-------- 869 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~-h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~-------- 869 (917)
.+ .+.+ ...+++..+.+ |...|.++ ++++..+++++.|+.|++|+...+.
T Consensus 233 ~~-----------~~~~--------~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 233 AC-----------SGSD--------PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp CC-----------C-----------CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred ee-----------eccC--------CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence 00 0000 11233444544 88889888 4578899999999999999986542
Q ss_pred -EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcc
Q psy3053 870 -IVTELAGHEDAISCVAWDEKR-KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 870 -~l~~l~~h~~~V~slafSpdg-~~LaSgs~DG~V~IWdl~~~ 910 (917)
......+|...|++++|+|++ .+||||+.||+|++|++...
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 123346899999999999998 59999999999999999754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=344.62 Aligned_cols=322 Identities=15% Similarity=0.209 Sum_probs=283.5
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeee
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i 657 (917)
.|.++|.+++|+|||+.++++..++.+..|.............|...|.+++|+|+++++++++ ||.|++|++.+++..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3567899999999999999988888777776655545555557899999999999999999999 999999999877533
Q ss_pred ---EEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 658 ---TELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 658 ---~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
..+. +|...|++++|+|++++|++++.||.|++||+.++. .........|...+.+++|+|+++.+++++
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDSKVCFSCC 160 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCCCEEEEEe
Confidence 3333 799999999999999999999999999999998752 113344567888999999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~l 811 (917)
.||.|++||+++++....+. .|...+.+++|+|+++.+++++.||.|++||+++++.+....+...+.++++++++ .+
T Consensus 161 ~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 161 SDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp TTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence 99999999999999988887 78999999999999999999999999999999999999988999999999999865 57
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
++++.+|.|++||+.+++.. .+..|...|.++ +++++++++++.||.|++||+.+++.+... .|...|.+++|+|+
T Consensus 240 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 240 AVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp EEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred EEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCC
Confidence 78889999999999988754 567899999998 558999999999999999999999988554 48899999999999
Q ss_pred CCEEEEEeCCCcEEEEecC
Q psy3053 890 RKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 890 g~~LaSgs~DG~V~IWdl~ 908 (917)
+++|++++.||.|++|++-
T Consensus 318 ~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SCEEEEEETTSCEEEEEEE
T ss_pred CCEEEEecCCCeEEEEEEe
Confidence 9999999999999999973
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=355.44 Aligned_cols=322 Identities=20% Similarity=0.325 Sum_probs=292.0
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+....+.+|.+.|.. +++++|+++++|+.||+|++||+.+++.+..+.+|...|.+++++ ++.+++|+.||+|++||
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 345678999987643 356678999999999999999999999999999999999999997 56999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.+++.+..+.+|...|.+++++ ++.+++|+.||+|++||+.++ .......+|...|.++++ +++.+++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-------QCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-------CEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-------cEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 99999999999999999999996 478999999999999999876 344456688999999999 7889999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE 809 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~ 809 (917)
|+.||.|++||+++++.+..+. .|...|.+++| ++..+++++.||.|++||+++++.+.... +...+.++.++++
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~- 330 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN- 330 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT-
T ss_pred EcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCC-
Confidence 9999999999999999999887 88999999999 88999999999999999999998887654 5567888998876
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEEec---CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEe-----cCCCCCE
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQVRA---HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTEL-----AGHEDAI 881 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l~~---h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l-----~~h~~~V 881 (917)
.+++|+.||.|++||+.+++.+..+.+ |...|.+++++++++++|+.||.|++||+.+++.+..+ .+|.+.|
T Consensus 331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v 410 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceE
Confidence 999999999999999999999999986 88999999999999999999999999999999999888 4788999
Q ss_pred EEEEEcCCCCEEEEEeCCCc----EEEEecCcc
Q psy3053 882 SCVAWDEKRKRLISGNLVGA----PKLYATEFY 910 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~----V~IWdl~~~ 910 (917)
++++|+|++.++++|+.||+ |.+||++..
T Consensus 411 ~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 411 WRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999999999998 999999753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=353.47 Aligned_cols=296 Identities=23% Similarity=0.350 Sum_probs=252.3
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecccc------------------ceEEEEEeCCCCEEEE
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM------------------TLSSLCILPDNCTMLV 639 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~------------------~V~sl~~spd~~~Las 639 (917)
+|.+.|.+++|+|||++|++|+ ++.+++|++.+++.+..+..+.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 78999999999988776655432 3899999999999999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||+.++ .......+...+.++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~--------~~~~~~~~~~~v~~~ 212 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--------QCSLTLSIEDGVTTV 212 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--------EEEEEEECSSCEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC--------eeEEEEEcCCCcEEE
Confidence 999999999999999999999999999999999999999999999999999999876 233334567789999
Q ss_pred EEeC-CCCEEEEEECCCeEEEEECCCCeeeEEec------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 720 AISK-DNNQLAVGTEAGELIIWSLENHLMTQQLS------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 720 ~~sp-dg~~Lasgs~dG~I~iwDl~~~~~~~~l~------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
+++| +++++++|+.||.|++||++++..+..+. .+|...|.+++|+|+|+.|++++.|+.|++||+++.....
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999 89999999999999999999998877663 3688999999999999999999999999999997654321
Q ss_pred EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 793 NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
... ....+.+...+.+|...|.++ ++++.+|++|+.||.|++||+.++++
T Consensus 293 ~~~----------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 293 DSK----------------------------TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp ------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred ccc----------------------------CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 100 011234455677899999888 56899999999999999999999999
Q ss_pred EEEecCCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEecCcc
Q psy3053 871 VTELAGHEDAISCVAWDE------KRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 871 l~~l~~h~~~V~slafSp------dg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+..+.+|.+.|.+++|++ ++.+|+||+.||+|++|+++..
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999986 6889999999999999998643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=344.41 Aligned_cols=292 Identities=15% Similarity=0.245 Sum_probs=250.1
Q ss_pred cceeeeccCCcceEEEEE-----eC-CCcEEEEEecCCceEEEeccCC-------ceeeeeeccccceEEEEEeCCCCEE
Q psy3053 571 EPLHFCHSHKEAITAVAI-----CG-EGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~f-----Sp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~~~~~~~~V~sl~~spd~~~L 637 (917)
.+...+.+|.+.|++++| ++ ++++|+||+.|++|++||+.++ .....+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456788999999999999 76 8999999999999999999753 3456678899999999999999999
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.... .........|...|.
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSCSSCEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCCCceee
Confidence 999999999999999999999999999999999999999999999999999999986431 001111236788999
Q ss_pred EEEEeCCC----------CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-
Q psy3053 718 CLAISKDN----------NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT- 786 (917)
Q Consensus 718 ~l~~spdg----------~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~- 786 (917)
+++|+|++ .++++|+.||.|++||. +......+. .|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999987 78999999999999994 456666666 789999999999999999999999999999994
Q ss_pred CCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE--EEe-----------cCCCceEEE--eecCCEE
Q psy3053 787 TGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK--QVR-----------AHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 787 tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~--~l~-----------~h~~~V~si--s~dg~~L 851 (917)
.+...........+.+++|+|++.+++++.++.|++||+.+++... .+. +|...|.++ +|+|++|
T Consensus 245 ~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 245 LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp CSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred CcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 4444445556778999999999998889999999999998765432 333 677888888 5689999
Q ss_pred EEEeCCCeEEEEECcCCe
Q psy3053 852 LVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~ 869 (917)
++|+.||.|++|+++++.
T Consensus 325 ~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEETTSEEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEccC
Confidence 999999999999987653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=344.81 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=229.9
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC-----------ceeeeeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG-----------RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~-----------~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
..|...|.+++|+|||++|++++ |+++++||.... ........+..+|.+++|+|++ .+++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999998877 788888874211 1111222355679999999985 6889999999
Q ss_pred EEEEEeccCeeeEE----eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 646 VVIYDVECGRIVTE----LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 646 I~Iwdl~tg~~i~~----l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
|++||+.+++.... ..+|.+.|++++|+|++++|++|+.||+|++||+.++ .......+|...|.+++|
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------VVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEcCcCCceEEEEe
Confidence 99999999876543 4589999999999999999999999999999999876 345566789999999999
Q ss_pred eCCC-CEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy3053 722 SKDN-NQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798 (917)
Q Consensus 722 spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~ 798 (917)
++++ .++++|+.||+|++||+++++....+.. .+...+.+++|+|+ ++++++|+.||.|++||++++
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------- 247 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---------- 247 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----------
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC----------
Confidence 9988 5789999999999999999988887752 34567888999884 456777777777777776654
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC-CEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN-CTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg-~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+++..+.+|...|+++ +|++ ++|++|+.||+|++||+.+++++ .+.
T Consensus 248 ------------------------------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~ 296 (344)
T 4gqb_B 248 ------------------------------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ 296 (344)
T ss_dssp -------------------------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC
T ss_pred ------------------------------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc
Confidence 3445567788888888 4566 57999999999999999988765 568
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcce
Q psy3053 876 GHEDAISCVAWDEKRK-RLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 876 ~h~~~V~slafSpdg~-~LaSgs~DG~V~IWdl~~~l 911 (917)
+|.+.|++++|+|+++ +|+|||.||+|++|++....
T Consensus 297 ~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999999999986 57799999999999998653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=363.88 Aligned_cols=331 Identities=13% Similarity=0.142 Sum_probs=279.0
Q ss_pred CcceEEEEEeCCCc-EEEEE----------ecCCceEEEeccCCcee--eeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 580 KEAITAVAICGEGI-SVASV----------GRDAMLKIHSLKTGRQE--RSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~-~Lasg----------s~Dg~I~IWd~~t~~~~--~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
...|.+++|+|+|+ ++++| +.||.|++|++.++... .....|...|.+++|+|++++|++|+.||.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 45789999999997 89999 88999999999887632 2223578899999999999999999999999
Q ss_pred EEEEecc----CeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCcc--CCcceeeeccCCCceEEE
Q psy3053 647 VIYDVEC----GRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMK--PSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 647 ~Iwdl~t----g~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~--~~~~~~~~~~h~~~V~~l 719 (917)
++|++.+ .+....+.+|.+.|++++|+|+ +++|++++.||+|++||+.+...... ..........|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 4578889999999999999998 89999999999999999987631110 011112235688899999
Q ss_pred EEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecCCC-----CCCeEEEEEecCC-CEEEEEeCCC---eEEEEECCCC-
Q psy3053 720 AISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSDDI-----NASVNGVLFSEDG-CRVLSCGNNC---MLNVYDLTTG- 788 (917)
Q Consensus 720 ~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h-----~~~V~~v~fspdg-~~L~s~s~Dg---~I~iwDl~tg- 788 (917)
+|+|+ +..+++|+.||.|++||+++++.+..+.... ...|.+++|+|++ ..+++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 7899999999999999999999988887322 7899999999997 6899999998 9999999986
Q ss_pred eEEEEee--cCCceEEEEEeC-C-CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC-CEEEEEeCCCeEE
Q psy3053 789 MQVCNKV--FEEKLLCLSWAG-E-EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN-CTMLVGCWDSCVV 861 (917)
Q Consensus 789 ~~i~~~~--~~~~i~~l~~s~-~-~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg-~~Lasgs~DG~I~ 861 (917)
....... +...+.+++|++ + ..+++++.||.|++||+.+++.+..+.+|...|.++ ++++ .++++++.||.|+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 4444443 778899999987 4 468899999999999999999999999999999888 5577 8999999999999
Q ss_pred EEECcCCeEEEEe-----------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 862 IYDVECGRIVTEL-----------------------------------AGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 862 Iwdl~tg~~l~~l-----------------------------------~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+|++.++...... ..|..++.+++|+|+|++|++|+.||.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 9999876532211 11667888999999999999999999999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
++..
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 9753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=350.52 Aligned_cols=321 Identities=12% Similarity=0.111 Sum_probs=275.6
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..+++++|+|+|++|++++.||.|++||+.+++....+..+ ..+...++++++++|++|+.||.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34568999999999999999999999999988777666655 34455578999999999999999999999999999988
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
.+|.+.|++++|+|++++|++|+.||+|++||+.++ .......+|...|.+++|+|+++.+++|+.||.|++|
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 999999999999999999999999999999999876 2344456899999999999999999999999999999
Q ss_pred ECCCCeeeEEecC--CCCCCeEE---------------------EEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee--
Q psy3053 741 SLENHLMTQQLSD--DINASVNG---------------------VLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-- 795 (917)
Q Consensus 741 Dl~~~~~~~~l~~--~h~~~V~~---------------------v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-- 795 (917)
|+++++.+..+.. .+...+.+ ++|+|+|+++++++.||.|++||+++++......
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 9999998888763 23344444 4557889999999999999999999998776654
Q ss_pred cCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCE-EEEEEec-CCCceEEE-eecCCEEEEEeCCCeEEEEECcCC--
Q psy3053 796 FEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQ-LLKQVRA-HKDAVLSL-HFDNCTMLVGCWDSCVVIYDVECG-- 868 (917)
Q Consensus 796 ~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~-~i~~l~~-h~~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg-- 868 (917)
+...+.+++|++++ .+++|+.||.|++||+.+++ ++..+.+ |...+.++ .+++++|++|+.||.|++|++...
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTC
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCC
Confidence 45789999999876 68999999999999999874 4666766 67788888 668889999999999999998763
Q ss_pred -------eEEEEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEecCc
Q psy3053 869 -------RIVTELAGHEDAISCVAWDEKRK---RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 869 -------~~l~~l~~h~~~V~slafSpdg~---~LaSgs~DG~V~IWdl~~ 909 (917)
.....+.+|.+.|.+++|+|++. .+++++.+|.+.+|+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 369 ERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 12234567889999999999999 888889999999999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.70 Aligned_cols=293 Identities=20% Similarity=0.296 Sum_probs=263.1
Q ss_pred ccceeeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccCCc-----eeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKTGR-----QERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~-----~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
++...+|+||.+.|++|+|+|+ +++|+|||.||+|++||+.+++ ..+.+.+|...|.+++|+|++++|++|+.|
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 4556789999999999999998 6899999999999999987654 356678899999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
+.|++|+...+........+...+..+.+++++..|++|+.|+.+++||..... .......+|...+.++++++
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC------KYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------EEEECSSSCSSCEEEEEECS
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc------eEEEEeccccCcccceEEcc
Confidence 999999999999998888999999999999999999999999999999986541 22333457888999999988
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 724 DN--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 724 dg--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
++ ..+++++.|+.|++||+++++....+. +|.+.|.+++|+|++++|++++.||.|++||+.+++.+........+.
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE
Confidence 65 578899999999999999999998887 899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe---------cCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR---------AHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~---------~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
++++++++.+++++.|+.|++||+.++..+..+. +|...|+++ ++++++|++|+.||.|++||+++|+
T Consensus 261 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999999988776653 578899988 5689999999999999999999886
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=347.52 Aligned_cols=337 Identities=15% Similarity=0.221 Sum_probs=285.9
Q ss_pred cccCCccccceeeeccCCcce-EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 563 SWCDKSILEPLHFCHSHKEAI-TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~V-tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.|...........+.+|.+.| +++.+ +++++++|+.||+|++||+.+++.+..+.+|...|.+++|++++ .+++|+
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s 180 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS 180 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe
Confidence 455444445567889999886 55555 57799999999999999999999999999999999999999988 999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEec--CCCCEEEEEECCCeEEEEeCCCCCCCccCC----------------
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWD--EKRKRLISGSWDCTVRVWNTGASWSHMKPS---------------- 703 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~s--pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---------------- 703 (917)
.||+|++||+++++.+..+.+|.+.|.+++|+ ++++++++|+.||+|++||+.+........
T Consensus 181 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 99999999999999999999999999999998 577899999999999999998763211100
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
.......+|...+.++ +++++.+++|+.||.|++||+.+++.+..+. +|...|.+++|+|+++.+++++.||.|++|
T Consensus 261 ~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp TEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 0133456777888776 5778999999999999999999999999887 889999999999999999999999999999
Q ss_pred ECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-cCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 784 DLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 784 Dl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
|+.+++.+.... +...+.++++++. .+++|+.||.|++||+.++....... .+...+.+++++++++++|+ ||.|+
T Consensus 338 d~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 338 DLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCC-EEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 999999887764 6778999999965 99999999999999999987666553 34455667799999999998 89999
Q ss_pred EEECcCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 862 IYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 862 Iwdl~tg~~l~~-l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+||+.+++.+.. +.+|.+.|.+++|+ ++..+++++.||.+.+|-++
T Consensus 416 iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 416 IYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp EEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 999999999986 67789999999998 44556666778877766554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=348.29 Aligned_cols=314 Identities=15% Similarity=0.212 Sum_probs=239.4
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec------ccEEEEEEeccCeee-
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW------DSCVVIYDVECGRIV- 657 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~------Dg~I~Iwdl~tg~~i- 657 (917)
.+.+.+++.+ +.++.+.....|++.... ...|...|.+++|+|||++||+|+. |+.|++|+..++...
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3445555544 444556777899876432 3468889999999999999999996 889999998876543
Q ss_pred ---EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 658 ---TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 658 ---~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
....+|.+.|++++|+|++. +++++.||+|++||+.++.... .......+|...|.+++|+|++++|++|+.|
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~---~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL---VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------C---CCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE---EEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 33456999999999999875 5678899999999998763211 1122345789999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCeEEEEee---cCCceEEEEEeCC--
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTTGMQVCNKV---FEEKLLCLSWAGE-- 808 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~~i~~~~---~~~~i~~l~~s~~-- 808 (917)
|.|++||+++++.+..+. .|...|.+++|++++. .+++++.||.|++||+++++...... +...+.+++|+|+
T Consensus 161 g~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred CeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 999999999999999988 8999999999999875 78999999999999999987765543 3456899999975
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--ecC-CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEE
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--FDN-CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~dg-~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sla 885 (917)
..+++|+.|+.|++||+++++.+..+.+|...|+++. |++ ++|++|+.||+|+|||+++++++..+ +|.+.|++++
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~va 318 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVA 318 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEE
Confidence 3678899999999999999999999999999999994 565 67999999999999999999887765 7999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEecCc
Q psy3053 886 WDE-KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 886 fSp-dg~~LaSgs~DG~V~IWdl~~ 909 (917)
|+| ++.+|+|||.||+|++|++..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCC
Confidence 998 899999999999999999964
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=402.74 Aligned_cols=347 Identities=16% Similarity=0.239 Sum_probs=305.8
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeC--CCCEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP--DNCTMLV 639 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp--d~~~Las 639 (917)
.+|+..+. +.+..+.+|.+.|++++|+|+|+++++++.||.|++||+.+++.+..+..|...|.+++|+| ++..+++
T Consensus 640 ~vw~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 640 QVFKAETG-EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEEECCCC-CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 57886554 56778899999999999999999999999999999999999999999999999999999999 5568999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc------------------
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------------------ 701 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------------------ 701 (917)
|+.||.|++||+.+++....+.+|.+.|++++|+|+++.+++|+.||+|++||+.++.....
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999765410000
Q ss_pred ------------------------------------------------------------------------CCcceeee
Q psy3053 702 ------------------------------------------------------------------------PSKSLVSQ 709 (917)
Q Consensus 702 ------------------------------------------------------------------------~~~~~~~~ 709 (917)
........
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 00011123
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC----------------------------------------------
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE---------------------------------------------- 743 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~---------------------------------------------- 743 (917)
.+|...|.+++|+|+++.+++++.||.|++||+.
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 4577788889999988888888888888888743
Q ss_pred ---------------------------------CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 744 ---------------------------------NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 744 ---------------------------------~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
+++....+. +|...|.+++|+|+|+.+++++.||.|++||+.+++.
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC-CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 222223333 6788999999999999999999999999999999998
Q ss_pred EEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 791 VCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 791 i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
.....+...+.++++++++.+++++.+|.|++||+.+++....+.+|.+.|.++ +++++.+++|+.||+|++||+.++
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 887788899999999999999999999999999999999999999999999887 679999999999999999999999
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 869 RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++..+.+|.+.|++++|+|+|++|++|+.||.|++||+...
T Consensus 1118 ~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred ceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999743
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=335.57 Aligned_cols=292 Identities=17% Similarity=0.211 Sum_probs=238.8
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeee-ec-cccceEEEEEeCCCCEEEEEecccE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSA-VL-SSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~-~~-~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
++++..+.+|.++|.+++|+++ +|++|+.|++|++|++.++. ....+ .. |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4567889999999999999998 99999999999999998753 34444 34 8889999999999999999999999
Q ss_pred EEEEEecc-------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 646 VVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 646 I~Iwdl~t-------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
|++|++.. .+....+.+|.+.|.+++|+|++++|++|+.|++|++||+..... .........+|...|.+
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~---~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---EYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC---CCEEEEEECCCSSCEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC---CeEEEEEeccCCCceEE
Confidence 99999853 356778899999999999999999999999999999999854311 11233446689999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCC--eeeEEecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCC------
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENH--LMTQQLSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTG------ 788 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~--~~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg------ 788 (917)
++|+|++.+|++|+.||+|++||..++ +.+..+. +|.+.|.+++|+|+ +..|++++.|++|++||+.++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 999999999999999999999998876 5666676 89999999999998 778999999999999998654
Q ss_pred --eEEEEee--cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE--EEEE-EecCCC-ceEEEe--e--cCCEEEEEeC
Q psy3053 789 --MQVCNKV--FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ--LLKQ-VRAHKD-AVLSLH--F--DNCTMLVGCW 856 (917)
Q Consensus 789 --~~i~~~~--~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~--~i~~-l~~h~~-~V~sis--~--dg~~Lasgs~ 856 (917)
....... +...+.+++|++++.+++++.||.|++||..++. .... ..+|.. .|.+++ + ++++|++|+.
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred eeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 2223322 6678999999998899999999999999998874 3333 357877 888884 4 5789999999
Q ss_pred CCeEEEEECcC
Q psy3053 857 DSCVVIYDVEC 867 (917)
Q Consensus 857 DG~I~Iwdl~t 867 (917)
||.|++|++++
T Consensus 318 Dg~v~~W~~~~ 328 (330)
T 2hes_X 318 DGIVNFWSLEK 328 (330)
T ss_dssp TSEEEEEEC--
T ss_pred CCcEEEEEecc
Confidence 99999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=355.20 Aligned_cols=339 Identities=13% Similarity=0.161 Sum_probs=284.7
Q ss_pred ccccCCcc---ccceeeeccCCcc-eEEEEEeC--CCcEEEEEecCCceEEEeccCC--------ceeeeeeccccceEE
Q psy3053 562 NSWCDKSI---LEPLHFCHSHKEA-ITAVAICG--EGISVASVGRDAMLKIHSLKTG--------RQERSAVLSSMTLSS 627 (917)
Q Consensus 562 ~~w~~~~~---l~~~~~l~~H~~~-Vtsv~fSp--dg~~Lasgs~Dg~I~IWd~~t~--------~~~~~~~~~~~~V~s 627 (917)
.+|+..+. .++...+.+|.+. |++++|+| +|++|++|+.||.|++||+.++ +....+..|..+|.+
T Consensus 42 ~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 121 (615)
T 1pgu_A 42 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 121 (615)
T ss_dssp EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEE
T ss_pred EEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEE
Confidence 57775533 1567889999999 99999999 9999999999999999999755 667778889999999
Q ss_pred EEEeCCCCEEEEEecc----cEEEEEEeccCeeeEEeccCCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 628 LCILPDNCTMLVGCWD----SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 628 l~~spd~~~Lasgs~D----g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
++|+|+++++++++.+ +.|++|| +++.+..+.+|.+.|++++|+|+++ .+++++.|+.|++||+.+.
T Consensus 122 ~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------ 193 (615)
T 1pgu_A 122 ISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------ 193 (615)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------
T ss_pred EEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------
Confidence 9999999999999987 7888888 6788899999999999999999998 8999999999999998765
Q ss_pred CcceeeeccCCC---ceEEEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecC---CCCCCeEEEEEecCCCEEEEEe
Q psy3053 703 SKSLVSQLDLDN---RIKCLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSD---DINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 703 ~~~~~~~~~h~~---~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s 775 (917)
........|.. .|.+++|+|+ ++++++|+.||.|++||+.+++.+..+.. .|...|.+++|+ ++..+++++
T Consensus 194 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 194 -KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp -EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred -ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence 23444556888 8999999999 99999999999999999999999988844 689999999999 999999999
Q ss_pred CCCeEEEEECCCCeEEEEeecC-----C----------------------------------------------------
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFE-----E---------------------------------------------------- 798 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~-----~---------------------------------------------------- 798 (917)
.|+.|++||+.+++.+...... .
T Consensus 272 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~ 351 (615)
T 1pgu_A 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI 351 (615)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcE
Confidence 9999999999987765443322 1
Q ss_pred ----------------------ceEEEEEeCC------------------------------------------------
Q psy3053 799 ----------------------KLLCLSWAGE------------------------------------------------ 808 (917)
Q Consensus 799 ----------------------~i~~l~~s~~------------------------------------------------ 808 (917)
.+.++++.++
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 1222222111
Q ss_pred -------------------------CEEEEEeC-CCeEEEEECCCCEEE-EEEecCCCceEEE--eecCCEEEEEeCCCe
Q psy3053 809 -------------------------EKVILGGA-LGMVYLVDLIQVQLL-KQVRAHKDAVLSL--HFDNCTMLVGCWDSC 859 (917)
Q Consensus 809 -------------------------~~lv~gs~-dG~I~vwdl~~~~~i-~~l~~h~~~V~si--s~dg~~Lasgs~DG~ 859 (917)
..+++++. +|.|++||+.+++.. ..+.+|...|+++ ++++++|++|+.||.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 511 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 511 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe
Confidence 23344444 555666666555444 4556788999998 569999999999999
Q ss_pred EEEEECcCCeEEEEecC-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEecCcc
Q psy3053 860 VVIYDVECGRIVTELAG-HEDAISCVAWDE----------KRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~-h~~~V~slafSp----------dg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|++||+.+++.+..+.+ |...|++++|+| ++++|++|+.||.|++|+++..
T Consensus 512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999999999988 999999999999 9999999999999999999863
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.88 Aligned_cols=310 Identities=14% Similarity=0.100 Sum_probs=265.3
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCCcc----CCcceeeeccCCC--ceEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSHMK----PSKSLVSQLDLDN--RIKCLAI 721 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~----~~~~~~~~~~h~~--~V~~l~~ 721 (917)
+++.+..+. |...|.+++|+|+++++++++.+ |.|.+||+........ ..........+.. .+.+++|
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999988887 88999999999999999999999 9999999876532110 1112223344555 8999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCC-CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLEN-HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~-~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i 800 (917)
+|+++.+++|+.||.|.+||+++ +.....+. .|...|.+++|+|++.+|++++.|+.|++||+.+++.+........+
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 262 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 262 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence 99999999999999999999998 67777776 78999999999999999999999999999999999998888888888
Q ss_pred EEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC
Q psy3053 801 LCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 801 ~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
.++++++++. +++++.++...+|.... ......+++||..+++.+..+.+|.+
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSA--------------------------NEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp EEEEECSSSSEEEEEECCC---------------------------------------CEEEEEETTTCCEEEEEECCSS
T ss_pred eeEEecCCCceEEEeecCCCceEEEEec--------------------------CCCcceeEEEecCCCcchhheecccC
Confidence 8999887654 55666666555544311 11234799999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.|++++|+|++++|++|+.||.|++|+++..
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999999999999999753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.71 Aligned_cols=295 Identities=19% Similarity=0.218 Sum_probs=235.6
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC--eeeEEe-cc-CCCceeEEEecCCCCEEEEEECCCe
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG--RIVTEL-AG-HEDAISCVAWDEKRKRLISGSWDCT 687 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg--~~i~~l-~~-H~~~Vt~l~~spd~~~L~Sgs~Dgt 687 (917)
.+.++.+.+|..+|.+++|+|+ +||+|+.|++|++||+.++ +....+ .+ |.+.|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4556778899999999999987 9999999999999999875 445555 44 9999999999999999999999999
Q ss_pred EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC----eeeEEecCCCCCCeEEEE
Q psy3053 688 VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH----LMTQQLSDDINASVNGVL 763 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~----~~~~~l~~~h~~~V~~v~ 763 (917)
|++||+.................+|...|.+++|+|++++|++|+.||+|++||++.. +.+..+. +|...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEE
Confidence 9999986431111112234456689999999999999999999999999999999432 4555666 7999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC--eEEEEe-ecCCceEEEEEeCC--C-EEEEEeCCCeEEEEECCCC--------E
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTTG--MQVCNK-VFEEKLLCLSWAGE--E-KVILGGALGMVYLVDLIQV--------Q 829 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~tg--~~i~~~-~~~~~i~~l~~s~~--~-~lv~gs~dG~I~vwdl~~~--------~ 829 (917)
|+|++.+|++++.|++|++||..++ +.+..+ .+...|.+++|+++ + .+++|+.|+.|++||+..+ .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999998776 344443 46778999999986 3 5889999999999998754 4
Q ss_pred EEEEEec-CCCceEEEee-cCCEEEEEeCCCeEEEEECcCCe--EEEE-ecCCCC-CEEEEEEcC--CCCEEEEEeCCCc
Q psy3053 830 LLKQVRA-HKDAVLSLHF-DNCTMLVGCWDSCVVIYDVECGR--IVTE-LAGHED-AISCVAWDE--KRKRLISGNLVGA 901 (917)
Q Consensus 830 ~i~~l~~-h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~tg~--~l~~-l~~h~~-~V~slafSp--dg~~LaSgs~DG~ 901 (917)
....+.+ |...|.++++ .+..|++|+.||.|++|+..+++ .... ..+|.. .|.+++|+| ++++|+||+.||+
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 4555555 8999999966 45589999999999999998874 3333 467887 899999999 7899999999999
Q ss_pred EEEEecCc
Q psy3053 902 PKLYATEF 909 (917)
Q Consensus 902 V~IWdl~~ 909 (917)
|++|+++.
T Consensus 321 v~~W~~~~ 328 (330)
T 2hes_X 321 VNFWSLEK 328 (330)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99999874
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=364.69 Aligned_cols=314 Identities=17% Similarity=0.255 Sum_probs=262.8
Q ss_pred ccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCC-----ceeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTG-----RQERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~-----~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
++....+++|.+.|+++++++++ ++|+||+.||+|++|++.+. ...+.+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34556789999999999999875 78999999999999998763 3456788899999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
|+|++||+.+++....+.+|.+.|.+++|+|++++|+|||.|++|++||...... ........+|...|.|++|+|
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSSCEEEEEECS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCCcEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999754310 000011246888999999999
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 724 DN--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 724 dg--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
++ ..+++|+.||+|++||+++++....+. +|.+.|.+++|+|+|++|++++.||.|++||+.+++.+........+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~ 606 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIH 606 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEE
Confidence 87 689999999999999999999888887 899999999999999999999999999999999999998888888999
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V 881 (917)
+++|++++.+++++.++.|++||+.+++.+..+..+......... ..+ ......+...+
T Consensus 607 ~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~------------~~~~~~~~~~~ 665 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKAD---------NSG------------PAATKRKVIYC 665 (694)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-------------------------------------CCCCE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccccc---------ccc------------cccCCceeEEe
Confidence 999999999888888999999999999988877654322110000 000 00112233458
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 882 SCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++++|||+|++|+||+.||.|++|++..
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 8999999999999999999999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=373.25 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=180.8
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
..+|.+.|++++|+|+|++||+|+.||+|++|+..+++..... .|..+|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 4589999999999999999999999999999998877665543 3677899999999 8899999999999999999999
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC---cce-eeeccCCCceEEEEEeCC-CCEEEE
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS---KSL-VSQLDLDNRIKCLAISKD-NNQLAV 730 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---~~~-~~~~~h~~~V~~l~~spd-g~~Las 730 (917)
.+..+. |.+.|++++|+|++++|++|+.||+|++||+.++....... ... ....+|.+.|.+++|+|+ +..+++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 988886 77899999999999999999999999999998762110000 000 123568899999999996 578999
Q ss_pred EECCCeEEEEECCCCeeeEEecCC-----------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDD-----------------INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~-----------------h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
|+.||.| +||+++++....+... |...|.+++|+|+|.+|++++.||.|++||+++++.+.
T Consensus 170 g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 170 SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 9999999 9999999988877621 24779999999999999999999999999998776543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=352.88 Aligned_cols=317 Identities=16% Similarity=0.230 Sum_probs=285.1
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC----ceeeeeeccccc-eEEEEEeC--CCCEEEEEecccEEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG----RQERSAVLSSMT-LSSLCILP--DNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~~~~~~~~-V~sl~~sp--d~~~Lasgs~Dg~I~Iw 649 (917)
..|.+.|++++|+|+|++|++++ ++.|++|++.++ +....+.+|... |.+++|+| ++++|++|+.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46889999999999999999998 899999999998 888999999999 99999999 99999999999999999
Q ss_pred EeccC--------eeeEEeccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 650 DVECG--------RIVTELAGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 650 dl~tg--------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
|+.++ +....+.+|...|.+++|+|++++|++++.| +.|.+||.. .......+|...|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---------~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---------NSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---------CEEEECCSCSSCEE
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---------CcceeeecCCccEE
Confidence 99855 6778888999999999999999999999988 799999832 23445668999999
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEECCCCeeeEEecCCCCC---CeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 718 CLAISKDNN-QLAVGTEAGELIIWSLENHLMTQQLSDDINA---SVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 718 ~l~~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~---~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
+++|+|+++ .+++|+.||.|++||+.+++.+..+. .|.. .|.+++|+|+ ++++++++.||.|++||+.+++.+.
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 999999997 89999999999999999999998887 7788 9999999999 9999999999999999999999988
Q ss_pred Ee-----ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC----CceEEE-eecCCEEEEEeCCCeEEE
Q psy3053 793 NK-----VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK----DAVLSL-HFDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 793 ~~-----~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~----~~V~si-s~dg~~Lasgs~DG~I~I 862 (917)
.+ .+...+.+++|+....+++++.+|.|++||+.+++.+..+..+. ..+.++ .++++.+++|+.||.|++
T Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323 (615)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred EecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEE
Confidence 87 67889999999844478899999999999999999999998773 556666 449999999999999999
Q ss_pred EECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 863 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 863 wdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
||+.+++.+..+.+|.+.|++++| |+ +++++.||.|++|++.
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred EECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 999999999999999999999999 77 7777777777777764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=385.98 Aligned_cols=332 Identities=15% Similarity=0.224 Sum_probs=292.0
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...+.+|.+.|++++|+|+|+++++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+++.+..+.+|...|++++|+| ++..+++|+.||+|++||+.++ .......+|...|.+++|+|+++.+++
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-------ECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-------SEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-------chhheecCCCCCEEEEEEecCCCEEEE
Confidence 9999999999999999999999 5568999999999999999876 344556789999999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEe------------------------------------------------------cCCCC
Q psy3053 731 GTEAGELIIWSLENHLMTQQL------------------------------------------------------SDDIN 756 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l------------------------------------------------------~~~h~ 756 (917)
|+.||.|++||+.++.....+ ..+|.
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 999999999999876544332 12567
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCE-----
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQ----- 829 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~----- 829 (917)
..|.+++|+|++..+++++.||.|++||+.++..+.... +...+.+++|++++ .+++++.||.|++|++.+..
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 789999999999999999999999999999998876654 66789999999876 58899999999999975310
Q ss_pred ---------------E---------EEEE--------ecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 830 ---------------L---------LKQV--------RAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 830 ---------------~---------i~~l--------~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
. .... ..+...+.++ +++++++++|+.||.|++|++.+++....+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 0 0001 1123455555 7799999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
+|.+.|++++|+|+|++|++++.||.|++|++....
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 999999999999999999999999999999998653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=366.35 Aligned_cols=335 Identities=15% Similarity=0.184 Sum_probs=292.7
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
++..+.+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++++|++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L 728 (917)
|+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++ ........+|...|.+++|+| ++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------SEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------ceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99999999999999999999999999999999999999999998764 123344567899999999999 88999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEE
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSW 805 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~ 805 (917)
++|+.||.|++||+.++.....+...+...+.+++|+| ++..+++++.||.|++||+.+++.+.... +...+.+++|
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 99999999999999998888887756668999999999 99999999999999999999998887765 6678999999
Q ss_pred eCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--ecCCE-EEEEeCCCeEEEEECcCCe----------EE
Q psy3053 806 AGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--FDNCT-MLVGCWDSCVVIYDVECGR----------IV 871 (917)
Q Consensus 806 s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~dg~~-Lasgs~DG~I~Iwdl~tg~----------~l 871 (917)
+|++ .+++++.||.|++||+.+++.+..+..|...+.+++ |++.. +++++.++.+.+|++..+. .+
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence 9876 588899999999999999999999999999999995 45552 3444456678889875432 22
Q ss_pred E---------------------------------EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 872 T---------------------------------ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 872 ~---------------------------------~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
. .+..+...+.+++|+|+|+++++++ ||.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc
Confidence 1 1123445688999999999999998 8999999987543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=329.82 Aligned_cols=307 Identities=17% Similarity=0.203 Sum_probs=254.8
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc------eeeeeeccccceEEEEEeCC----C---CEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR------QERSAVLSSMTLSSLCILPD----N---CTM 637 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~------~~~~~~~~~~~V~sl~~spd----~---~~L 637 (917)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.+++ ....+..|..+|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 34567889999999999999 799999999999999999988 77888899999999999999 9 999
Q ss_pred EEEecccEEEEEEeccCee-----eEEeccC-----CCceeEEEec----CCCCE-EEEEECCCeEEEEeCCC------C
Q psy3053 638 LVGCWDSCVVIYDVECGRI-----VTELAGH-----EDAISCVAWD----EKRKR-LISGSWDCTVRVWNTGA------S 696 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~-----i~~l~~H-----~~~Vt~l~~s----pd~~~-L~Sgs~DgtI~vWdl~~------~ 696 (917)
++|+.||.|++|++.+++. ...+.+| ...|.+++|+ |+++. |++|+.||.|++||+.. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999999887 8888888 5999999999 99999 99999999999999977 3
Q ss_pred CCCccCCcceeee-------ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC---C---CCCeEEEE
Q psy3053 697 WSHMKPSKSLVSQ-------LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD---I---NASVNGVL 763 (917)
Q Consensus 697 ~~~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~---h---~~~V~~v~ 763 (917)
.... ....... ..|...|.+++|+|++ .+++|+.||.|++||+++++.+..+. . | ...|.+++
T Consensus 165 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 165 LTLN--WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTC--CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCCCEEEEE
T ss_pred ceee--ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCCccceEE
Confidence 2111 0010022 4578899999999999 99999999999999999999988887 5 7 89999999
Q ss_pred EecCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCc
Q psy3053 764 FSEDGCRVLSCGNN---CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDA 840 (917)
Q Consensus 764 fspdg~~L~s~s~D---g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~ 840 (917)
|+|++++|++++.| |.|++||+.+++.+..+..... +. ........|...
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~-------~~--------------------~~~~~~~~~~~~ 293 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------SS--------------------QASLGEFAHSSW 293 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------------CCBSBSSC
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc-------cc--------------------cccccccccCCc
Confidence 99999999999999 9999999988765543321100 00 000001126777
Q ss_pred eEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec------CC---------------CCCEEEEEEcCCC-------
Q psy3053 841 VLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA------GH---------------EDAISCVAWDEKR------- 890 (917)
Q Consensus 841 V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~------~h---------------~~~V~slafSpdg------- 890 (917)
|.++ ++++++|++|+.||.|++||+.+++.+..+. +| ..+|++++|+|++
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 8777 5578899999999999999999999999998 78 9999999999998
Q ss_pred ---CEEEEEeCCCcEEEEecCcc
Q psy3053 891 ---KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 891 ---~~LaSgs~DG~V~IWdl~~~ 910 (917)
++|++|+.||.|++|++++.
T Consensus 374 ~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 374 DLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.02 Aligned_cols=287 Identities=12% Similarity=0.182 Sum_probs=232.4
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEec------CCceEEEeccCCceee----eeeccccceEEEEEeCCCCEEEEEeccc
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGR------DAMLKIHSLKTGRQER----SAVLSSMTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~------Dg~I~IWd~~t~~~~~----~~~~~~~~V~sl~~spd~~~Lasgs~Dg 644 (917)
...+|.+.|++++|||||++|++|+. |+.|++|+..++.... ....|...|.+++|+|++. +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 34679999999999999999999997 7789999987765433 3345778899999999985 55678899
Q ss_pred EEEEEEeccCeeeE----EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 645 CVVIYDVECGRIVT----ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~----~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
+|++||+.+++... ...+|.+.|++++|+|++++|++|+.||+|++||+.++ ........|...|.+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-------AVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEE
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEcCCCCCEEEEE
Confidence 99999999886543 34589999999999999999999999999999999876 34455668999999999
Q ss_pred EeCCCC-EEEEEECCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEee-c
Q psy3053 721 ISKDNN-QLAVGTEAGELIIWSLENHLMTQQLS-DDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKV-F 796 (917)
Q Consensus 721 ~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~ 796 (917)
|++++. .+++++.||.|++||+++++....+. ..+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+. +
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~ 268 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH 268 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc
Confidence 999874 78999999999999999988776554 246678999999997 5688899999999999999988776654 5
Q ss_pred CCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--e-cCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 797 EEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--F-DNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 797 ~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~-dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
...|.+++|+|++ .+++|+.||.|++||+.+++.+..+ +|.+.|++++ | ++.+|++|+.||+|++|++.+...
T Consensus 269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 6789999999764 4788999999999999999887655 7999999995 4 789999999999999999975443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.56 Aligned_cols=287 Identities=19% Similarity=0.233 Sum_probs=237.1
Q ss_pred eeeeeeccccceEEEEE-----eC-CCCEEEEEecccEEEEEEeccC-------eeeEEeccCCCceeEEEecCCCCEEE
Q psy3053 614 QERSAVLSSMTLSSLCI-----LP-DNCTMLVGCWDSCVVIYDVECG-------RIVTELAGHEDAISCVAWDEKRKRLI 680 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~-----sp-d~~~Lasgs~Dg~I~Iwdl~tg-------~~i~~l~~H~~~Vt~l~~spd~~~L~ 680 (917)
....+.+|...|.+++| ++ ++++|++|+.|++|++||+.++ .....+.+|...|++++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678899999999999 66 8999999999999999999753 45677899999999999999999999
Q ss_pred EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe-cCCCCCCe
Q psy3053 681 SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL-SDDINASV 759 (917)
Q Consensus 681 Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l-~~~h~~~V 759 (917)
+|+.|++|++||+.++ .......+|...|.+++|+|+++.+++|+.||.|++||+......... ...|...|
T Consensus 93 s~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 9999999999999876 344556789999999999999999999999999999999854333222 12578899
Q ss_pred EEEEEecCC----------CEEEEEeCCCeEEEEECCCCeEEE-EeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCC
Q psy3053 760 NGVLFSEDG----------CRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 760 ~~v~fspdg----------~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~ 827 (917)
.+++|+|++ .++++++.|+.|++||.. +.... ...+...+.+++|+|++ .+++|+.||.|++||+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999987 789999999999999954 44443 34577889999999876 588899999999999954
Q ss_pred -CEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEE--Eec-----------CCCCCEEEEEEcCCCC
Q psy3053 828 -VQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVT--ELA-----------GHEDAISCVAWDEKRK 891 (917)
Q Consensus 828 -~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~--~l~-----------~h~~~V~slafSpdg~ 891 (917)
......+ .+...|.++ +|++.++++| .|+.|++|++.+++... .+. +|...|.+++|+|+|+
T Consensus 245 ~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 245 LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 3333333 345568877 6678777654 57789999998776433 443 6888999999999999
Q ss_pred EEEEEeCCCcEEEEecCcc
Q psy3053 892 RLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 892 ~LaSgs~DG~V~IWdl~~~ 910 (917)
+|++|+.||.|++|+++..
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEETTSEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEcc
Confidence 9999999999999998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=313.36 Aligned_cols=292 Identities=19% Similarity=0.279 Sum_probs=250.3
Q ss_pred cCCceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccCe-----eeEEeccCCCceeEEEecCCCCEEEEEE
Q psy3053 610 KTGRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECGR-----IVTELAGHEDAISCVAWDEKRKRLISGS 683 (917)
Q Consensus 610 ~t~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg~-----~i~~l~~H~~~Vt~l~~spd~~~L~Sgs 683 (917)
++.+...++.+|.+.|++++|+|+ +++||+|+.||+|++||+.+++ ....+.+|...|++++|+|++++|++|+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 334455678999999999999997 6899999999999999997653 4677899999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEE
Q psy3053 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVL 763 (917)
Q Consensus 684 ~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~ 763 (917)
.|+.|++|+.... ........+...+....+++++..+++|+.||.+++||+............|...+..++
T Consensus 106 ~d~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 106 WDGTLRLWDLTTG-------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp TTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred ccccceEEeeccc-------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 9999999998765 334445567788899999999999999999999999999887766665558899999999
Q ss_pred EecCC--CEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCC
Q psy3053 764 FSEDG--CRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKD 839 (917)
Q Consensus 764 fspdg--~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~ 839 (917)
|++++ ..+++++.|+.|++||+.+++...... +...|.+++++|++ .+++|+.||.|++||+.+.+.+..+..+ .
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~ 257 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-D 257 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-S
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-c
Confidence 99864 578899999999999999998877654 67789999999865 5788999999999999999999888755 5
Q ss_pred ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 840 AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA---------GHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 840 ~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~---------~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.++ ++++ .+++++.|+.|++||++++..+..+. +|...|++++|+|+|++|+||+.||.|+|||++
T Consensus 258 ~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 258 IINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 67777 4444 46677789999999999888776653 688899999999999999999999999999997
Q ss_pred cc
Q psy3053 909 FY 910 (917)
Q Consensus 909 ~~ 910 (917)
+.
T Consensus 337 tG 338 (340)
T 4aow_A 337 IG 338 (340)
T ss_dssp C-
T ss_pred Cc
Confidence 54
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.81 Aligned_cols=318 Identities=14% Similarity=0.129 Sum_probs=259.7
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
.+..|.++|++++|+|+|++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+++++++|+.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 356699999999999999999999999999999999987 788888999999999999999999999999999999999
Q ss_pred cCeeeEE--eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 653 CGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 653 tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+++.... +.+|...|.+++|+|++++|++|+.||.|++||+...... .........|...|.+++|+|+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---WVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---EEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---eeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 9875444 4679999999999999999999999999999998765210 0011223567899999999999999999
Q ss_pred EECCCeEEEEEC------------------CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 731 GTEAGELIIWSL------------------ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 731 gs~dG~I~iwDl------------------~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
|+.||.|++||+ ..++.+..+. .|...|.+++|+|++..|++++.||.|++||+++++.+.
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 999999999995 3667777777 788999999999999999999999999999999998887
Q ss_pred Eee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCC--CEE--EEEEecCCCceEEEeecCCEEEEEeCCCeEEEE---E
Q psy3053 793 NKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ--VQL--LKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIY---D 864 (917)
Q Consensus 793 ~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~--~~~--i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iw---d 864 (917)
.+. +...+.+++|++++.+++++.+|.|++|++.+ ++. +..+..+... ..+....+.+| +
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS------------SQRGLTARERFQNLD 306 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------------------CHHHHHHHCC
T ss_pred EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccc------------hhhhcchhhhhhhcc
Confidence 765 45689999999998888888999999999987 542 2222211111 12223445566 4
Q ss_pred CcCCeEE------EEe-cCCCCCEEEEEEc-CCC---CEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIV------TEL-AGHEDAISCVAWD-EKR---KRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l------~~l-~~h~~~V~slafS-pdg---~~LaSgs~DG~V~IWdl~~ 909 (917)
.. ++.. ..+ .+|.++|++++|+ ++| .+|+||+.||.|++|+++.
T Consensus 307 ~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 307 KK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CC-C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cc-cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 32 3332 333 4899999999976 676 9999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=337.97 Aligned_cols=327 Identities=15% Similarity=0.161 Sum_probs=253.8
Q ss_pred cccCCccccceeee-ccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccC---Cceee-eee-ccccceEEEEEeCCCC
Q psy3053 563 SWCDKSILEPLHFC-HSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKT---GRQER-SAV-LSSMTLSSLCILPDNC 635 (917)
Q Consensus 563 ~w~~~~~l~~~~~l-~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t---~~~~~-~~~-~~~~~V~sl~~spd~~ 635 (917)
.|+. ..+++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.... ... .|...|.+++|+|+++
T Consensus 47 ~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 4663 23566777 89999999999999 999999999999999999977 44221 222 4889999999999999
Q ss_pred EEEEEecccEEEEEEec---cCeeeEEecc------------CCCceeEEE--ecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 636 TMLVGCWDSCVVIYDVE---CGRIVTELAG------------HEDAISCVA--WDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~---tg~~i~~l~~------------H~~~Vt~l~--~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
.|++|+.||.|++||++ +++......+ +...+.++. +++++.+|++|+.||+|++||+.++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-- 202 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-- 202 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 99999999999999995 5655444332 455666666 5578999999999999999999876
Q ss_pred CccCCcceeeecc--CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec----CCCEEE
Q psy3053 699 HMKPSKSLVSQLD--LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE----DGCRVL 772 (917)
Q Consensus 699 ~~~~~~~~~~~~~--h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp----dg~~L~ 772 (917)
........ |...|++++|+|+++++++|+.||.|++||+++++.+..+...|...|.+++|+| ++.+++
T Consensus 203 -----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 203 -----ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp -----CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred -----eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 23333444 7889999999999999999999999999999999999888656778999996664 688999
Q ss_pred EEeCCCeEEEEECCCCeEEEEee---------------------------cCCceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKV---------------------------FEEKLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~---------------------------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
+++.||.|++||+++++.+..+. +...+.+++++++..+++|+.||.|++||+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEET
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEEC
Confidence 99999999999999998876655 334588899996667899999999999999
Q ss_pred CCCEEEEEEecCCCceEEE---ee--cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC--CCEEEEEeC
Q psy3053 826 IQVQLLKQVRAHKDAVLSL---HF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK--RKRLISGNL 898 (917)
Q Consensus 826 ~~~~~i~~l~~h~~~V~si---s~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd--g~~LaSgs~ 898 (917)
.+++....+.+|......+ .. +..+++.. |+...+........|.+.|++++|+++ +.+|+||+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred CCcccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcC
Confidence 9999888888875443333 22 22222222 333344455666779999999999998 789999999
Q ss_pred CCcEEEEe
Q psy3053 899 VGAPKLYA 906 (917)
Q Consensus 899 DG~V~IWd 906 (917)
||.|+||+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=308.65 Aligned_cols=284 Identities=14% Similarity=0.165 Sum_probs=253.7
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+.+.+|...|.+++| ++++++++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 566778899999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRV 771 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L 771 (917)
+.... ..........|...|.+++| +++.+++|+.||.|++|| .++....+. .|...+.+++|+| ++..+
T Consensus 88 ~~~~~----~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 88 LFATS----GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTCCT----TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEE
T ss_pred eeecC----CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEE
Confidence 87652 11234445678999999999 578999999999999999 666777776 7899999999998 99999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee--cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--c
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKV--FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--D 847 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~--~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--d 847 (917)
++++.||.|++||. +....... +...+.++++++++.+++++.+|.|++||+.+++.+..+.+|...|.++.+ +
T Consensus 159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 99999999999994 44444433 678899999999989999999999999999999999999999999999954 6
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+ .+++|+.||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|+++..
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 6 689999999999999999999999999999999999999998 667999999999999854
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.71 Aligned_cols=312 Identities=12% Similarity=0.122 Sum_probs=239.5
Q ss_pred eeccCCcceEEEEEeCC----CcEEEEEecCCceEEEeccCCceeeeeec-----cccceEEEEEeCC----CCEEEEEe
Q psy3053 575 FCHSHKEAITAVAICGE----GISVASVGRDAMLKIHSLKTGRQERSAVL-----SSMTLSSLCILPD----NCTMLVGC 641 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-----~~~~V~sl~~spd----~~~Lasgs 641 (917)
...+|.++|++++|+|+ ...+++++.++.|++|++.+++.+..+.. +...|.+++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44689999999999984 45677777788999999998887776664 4467999999999 67999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee---ccCCCceE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ---LDLDNRIK 717 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~---~~h~~~V~ 717 (917)
.||.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||+|++||+.++ ...... ..|...|.
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-------TLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-------EEEEEECSTTSCSSCEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-------eEEEEecccccccCcee
Confidence 999999999999999999999999999999999 8999999999999999999876 222222 57899999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
+++|+|+++.+++|+.||.|++||+++++....+.. .+.++|++..+........ .........+.
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 231 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE-------SYDYNPNKTNRPFISQKIH-------FPDFSTRDIHR 231 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH-------HHTCCGGGCSSCCCCEEEC-------CCSEEECSSCS
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccce-------eEEecCCCCcccccceeec-------cCccccccCCc
Confidence 999999999999999999999999998765544331 1122232222211110000 00000111134
Q ss_pred CceEEEEEeCCCEEEEEeCCCeEEEEECCCC--------------EEEEEEecCCCceEEE--eec--CCEEEEEeCCCe
Q psy3053 798 EKLLCLSWAGEEKVILGGALGMVYLVDLIQV--------------QLLKQVRAHKDAVLSL--HFD--NCTMLVGCWDSC 859 (917)
Q Consensus 798 ~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~--------------~~i~~l~~h~~~V~si--s~d--g~~Lasgs~DG~ 859 (917)
..+.+++|+++ .+++++.+|.|++||+.++ ..+..+.+|...|.++ +++ +++|++|+.||.
T Consensus 232 ~~v~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 232 NYVDCVRWLGD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp SCCCEEEEETT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred ceEEEEEEcCC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 44555555522 5555555555555555443 3467788898888887 778 999999999999
Q ss_pred EEEEECcCCe----EEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 860 VVIYDVECGR----IVTELAGH--EDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 860 I~Iwdl~tg~----~l~~l~~h--~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
|++||+.+++ ....+.+| ...|++++|+|++++|++|+.||.|++||+.
T Consensus 311 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999875 55577777 7999999999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=309.37 Aligned_cols=292 Identities=19% Similarity=0.266 Sum_probs=259.1
Q ss_pred CccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 567 KSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 567 ~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
....++...+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|+++.+++|+.||.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4456778899999999999999 999999999999999999999999899999999999999999999999999999999
Q ss_pred EEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 647 VIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 647 ~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
++|++... +....+.+|...|.+++| +++.+++++.||.|++||. . ........|...+.+++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~-------~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--G-------SLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--T-------EEEEEEECCSSCEEEEEEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--C-------cEEEecccCCCceeEEEEcc
Confidence 99998754 567788899999999999 5689999999999999992 2 24445667899999999998
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceE
Q psy3053 724 -DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLL 801 (917)
Q Consensus 724 -dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~ 801 (917)
+++.+++++.||.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+.... +...+.
T Consensus 153 ~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 899999999999999999 45666777755899999999999998 9999999999999999998887765 678899
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
++++++++.+++++.||.|++||+.+++.+..+..|...|.++ +++++ +++++.||.|++||+.+++.....
T Consensus 230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 230 CIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999899999999999999999999999999999999998 45777 667999999999999987765443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=313.40 Aligned_cols=256 Identities=18% Similarity=0.232 Sum_probs=222.4
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+++.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee-EEecCCCCCCeEEEEEec-CCCE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT-QQLSDDINASVNGVLFSE-DGCR 770 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~-~~l~~~h~~~V~~v~fsp-dg~~ 770 (917)
+.++ .......+|...|.+++|+|+++++++|+.||+|++||++++... ..+. +|...|.+++|+| ++..
T Consensus 84 ~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 84 YNTG-------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp TTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTE
T ss_pred CCCC-------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCE
Confidence 9876 345556789999999999999999999999999999999987444 4454 8999999999999 6789
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--e--e
Q psy3053 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--H--F 846 (917)
Q Consensus 771 L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s--~ 846 (917)
+++|+.|++|++||+.++...... ..+|...+..+ + +
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTL---------------------------------------TTGQERGVNYVDYYPLP 196 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEE---------------------------------------ECCCTTCEEEEEECCST
T ss_pred EEEEeCCCeEEEEECCCCCcccee---------------------------------------ccCCcCcEEEEEEEEcC
Confidence 999999999999998765322111 11233444444 2 3
Q ss_pred cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 847 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
++.+|++|+.||+|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||++.. .+..+
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 6789999999999999999999999999999999999999999999999999999999999854 44444
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=361.28 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=259.7
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee-----------eeeeccccceEEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-----------RSAVLSSMTLSSLCI 630 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-----------~~~~~~~~~V~sl~~ 630 (917)
.+|+..+. +++..+. |.+.|++++|+|+++++++|+.||+|++||+.+++.. .....|..+|.+++|
T Consensus 82 ~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 82 YVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp EEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred EEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence 68886543 4555664 7789999999999999999999999999999987653 234568889999999
Q ss_pred eCC-CCEEEEEecccEEEEEEeccCeeeEEeccC------------------CCceeEEEecCCCCEEEEEECCCeEEEE
Q psy3053 631 LPD-NCTMLVGCWDSCVVIYDVECGRIVTELAGH------------------EDAISCVAWDEKRKRLISGSWDCTVRVW 691 (917)
Q Consensus 631 spd-~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H------------------~~~Vt~l~~spd~~~L~Sgs~DgtI~vW 691 (917)
+|+ +..+++|+.||.| +||+.+++.+..+.+| ...|++++|+|+|++|++|+.||+|++|
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 996 5789999999999 9999999988888766 5789999999999999999999999999
Q ss_pred eCCCCCCCcc-CC-----cce-----eeeccCCCceEEEEEeC----C--------------------------------
Q psy3053 692 NTGASWSHMK-PS-----KSL-----VSQLDLDNRIKCLAISK----D-------------------------------- 724 (917)
Q Consensus 692 dl~~~~~~~~-~~-----~~~-----~~~~~h~~~V~~l~~sp----d-------------------------------- 724 (917)
|+.++..... .. ... .....+...|.+++|++ +
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9977531100 00 000 00001122344444422 1
Q ss_pred ---------------------------------------------CCEEEEEECCCeEEEEECCCCeeeEE-------ec
Q psy3053 725 ---------------------------------------------NNQLAVGTEAGELIIWSLENHLMTQQ-------LS 752 (917)
Q Consensus 725 ---------------------------------------------g~~Lasgs~dG~I~iwDl~~~~~~~~-------l~ 752 (917)
...+++++.||.|++||+.++..... +.
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 12445555566677777655532221 01
Q ss_pred ---------------------------------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE----EEe-
Q psy3053 753 ---------------------------------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV----CNK- 794 (917)
Q Consensus 753 ---------------------------------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i----~~~- 794 (917)
.+|...+.+++|+|+++.|++|+.|++|++||+.++... ...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~ 478 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVN 478 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence 012223344556788999999999999999999877421 111
Q ss_pred -------ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCC--------------------------------------
Q psy3053 795 -------VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQV-------------------------------------- 828 (917)
Q Consensus 795 -------~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~-------------------------------------- 828 (917)
.+...|.+++|+|++ .+++|+.||+|++||+.++
T Consensus 479 l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (902)
T 2oaj_A 479 LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP 558 (902)
T ss_dssp HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence 456789999999875 5788999999999999765
Q ss_pred -------EEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEE--E---ec-CCCCCEEEEEEc-----C
Q psy3053 829 -------QLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVT--E---LA-GHEDAISCVAWD-----E 888 (917)
Q Consensus 829 -------~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~--~---l~-~h~~~V~slafS-----p 888 (917)
+++..+.+|.+.|+++ +||| +||+|+.||+|++||++++..+. . +. +|.+.|++++|+ |
T Consensus 559 ~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~ 637 (902)
T 2oaj_A 559 TGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD 637 (902)
T ss_dssp TTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT
T ss_pred CCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC
Confidence 3467788999999999 7799 99999999999999999887764 2 32 899999999999 8
Q ss_pred CC---CEEEEEeCCCcEEEEec
Q psy3053 889 KR---KRLISGNLVGAPKLYAT 907 (917)
Q Consensus 889 dg---~~LaSgs~DG~V~IWdl 907 (917)
|| ++|++|+.||+|++|++
T Consensus 638 Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 638 DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp SSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCcceEEEEEecCCcEEEEEE
Confidence 85 89999999999999998
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=307.74 Aligned_cols=292 Identities=19% Similarity=0.210 Sum_probs=253.8
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-----ccccceEEEEEeCCCCEE
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-----LSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-----~~~~~V~sl~~spd~~~L 637 (917)
.|.......+.. ..+|.+.|++++|+|+++++++++ ||.|++|++.++.....+. .|...|.+++|+|+++.+
T Consensus 35 ~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 112 (337)
T 1gxr_A 35 GPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp STTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE
T ss_pred ccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEE
Confidence 344333333333 347999999999999999999999 9999999998876443332 678899999999999999
Q ss_pred EEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 638 LVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
++|+.||.|++||+.+++ ....+.+|...|++++|+|+++++++++.||.|++||+.++ ........|...
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~ 185 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDG 185 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSC
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCc
Confidence 999999999999999887 66778889999999999999999999999999999999875 234445668899
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+.+++|+|+++.+++++.||.|++||+++++.+..+. +...+.+++|+|+++.+++++.++.|++||+.+++......
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC
Confidence 9999999999999999999999999999999888775 67889999999999999999999999999999998877777
Q ss_pred cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECc
Q psy3053 796 FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 796 ~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
+...+.+++|++++ .+++++.+|.|++||+.+++.+.. ..|...+.++ ++++++|++++.||.|++|++.
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 88899999999865 588899999999999999988754 3578888888 5689999999999999999963
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=324.00 Aligned_cols=292 Identities=17% Similarity=0.191 Sum_probs=246.2
Q ss_pred eccCCceeeeeeccccceEEEEEeCCC-CEEEEEecccEEEEEEeccCeeeEEec--cCCCceeEEEecC-CCCEEEEEE
Q psy3053 608 SLKTGRQERSAVLSSMTLSSLCILPDN-CTMLVGCWDSCVVIYDVECGRIVTELA--GHEDAISCVAWDE-KRKRLISGS 683 (917)
Q Consensus 608 d~~t~~~~~~~~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwdl~tg~~i~~l~--~H~~~Vt~l~~sp-d~~~L~Sgs 683 (917)
++.+.+....+..|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334455566677899999999999999 999999999999999999888777665 6999999999999 789999999
Q ss_pred CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEE
Q psy3053 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVL 763 (917)
Q Consensus 684 ~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~ 763 (917)
.|++|++||+.+. ..........+...|.+++|+|+++.+++|+.||.|++||+ +++.+..+. .|...|.+++
T Consensus 139 ~d~~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~ 211 (383)
T 3ei3_B 139 IRGATTLRDFSGS-----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAE 211 (383)
T ss_dssp TTTEEEEEETTSC-----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEE
T ss_pred CCCEEEEEECCCC-----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEE
Confidence 9999999999753 11112222345588999999999999999999999999999 566777777 7899999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEECCC----CeEEEEeecCCceEEEEEeC-CC-EEEEEeCCCeEEEEECCCCEEEEEEec
Q psy3053 764 FSEDGC-RVLSCGNNCMLNVYDLTT----GMQVCNKVFEEKLLCLSWAG-EE-KVILGGALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 764 fspdg~-~L~s~s~Dg~I~iwDl~t----g~~i~~~~~~~~i~~l~~s~-~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~ 836 (917)
|+|+++ .+++++.|+.|++||+++ +..+....+...+.+++|++ ++ .+++++.||.|++||+.+++....+.+
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 999999 999999999999999987 67777788899999999998 65 678899999999999998877666665
Q ss_pred CC-------C----------ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecC--CCCCEEEEEEcCCCCEEEE
Q psy3053 837 HK-------D----------AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 837 h~-------~----------~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~--h~~~V~slafSpdg~~LaS 895 (917)
|. . .+.++ ++++++ +|+.||.|++||+.+++.+..+.+ |.+.+..++|+|++++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 43 1 22222 456665 777899999999999999999987 4577888899999999999
Q ss_pred EeCCCcEEEEecCc
Q psy3053 896 GNLVGAPKLYATEF 909 (917)
Q Consensus 896 gs~DG~V~IWdl~~ 909 (917)
|+ ||.|++|+++.
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999975
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.49 Aligned_cols=328 Identities=12% Similarity=0.157 Sum_probs=246.3
Q ss_pred cceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCceeeeee-------------ccccceEEEEEeC-CCC
Q psy3053 571 EPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAV-------------LSSMTLSSLCILP-DNC 635 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-------------~~~~~V~sl~~sp-d~~ 635 (917)
+....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++....... .|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 45677889999999999999 99999999999999999999887665543 4888999999999 778
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCC---CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK---RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd---~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
++++|+.||.|++||+.+++....+. +...+.++++++. +.++++|+.||.|++||+.++ ........|
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-------~~~~~~~~~ 185 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-------SCSHILQGH 185 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-------CCCEEECCC
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-------ceeeeecCC
Confidence 99999999999999999999888776 7888999999884 459999999999999999765 234445678
Q ss_pred CCceEEEEEeCCCC-EEEEEECCCeEEEEECCCCe-eeEEec--------------CCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 713 DNRIKCLAISKDNN-QLAVGTEAGELIIWSLENHL-MTQQLS--------------DDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 713 ~~~V~~l~~spdg~-~Lasgs~dG~I~iwDl~~~~-~~~~l~--------------~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
...|.+++|+|+++ ++++|+.||.|++||++++. ....+. ..|...|.+++|+|+++++++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 99999999999998 58999999999999998765 333331 267889999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeec-------CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eec
Q psy3053 777 NCMLNVYDLTTGMQVCNKVF-------EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFD 847 (917)
Q Consensus 777 Dg~I~iwDl~tg~~i~~~~~-------~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~d 847 (917)
||.|++||+.+++....... ..............+++++.+|.|++||+.+++.+..+.+|...|+++ +++
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 99999999998865432211 111223333455678889999999999999999999999999999998 668
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCc
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp-dg~~LaSgs~DG~V~IWdl~~ 909 (917)
+++|++|+.||.|++||+.+++.+.....+... ..+.+ ....+.+++.|+.+++|+...
T Consensus 346 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred CCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 999999999999999999999887665543322 23333 334556778899999998753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=313.14 Aligned_cols=287 Identities=13% Similarity=0.228 Sum_probs=242.7
Q ss_pred eeeccccceEEEEEeCCCCEE-EEEec---ccEEEEEEeccCeeeEEe-ccCCCceeEEEecCC---CCEEEEEECCCeE
Q psy3053 617 SAVLSSMTLSSLCILPDNCTM-LVGCW---DSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEK---RKRLISGSWDCTV 688 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~L-asgs~---Dg~I~Iwdl~tg~~i~~l-~~H~~~Vt~l~~spd---~~~L~Sgs~DgtI 688 (917)
...+|...|.+++|+|++..+ ++|+. ||.|++||+.+++..... .+|.+.|++++|+|+ +++|++|+.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 345689999999999998654 56665 999999999998765443 379999999999998 6999999999999
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEE------eCCCCEEEEEECCCeEEEEECCCCe-eeEEecCCC----CC
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI------SKDNNQLAVGTEAGELIIWSLENHL-MTQQLSDDI----NA 757 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~------spdg~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h----~~ 757 (917)
++||+.++. .......+|...|.+++| +|+++.+++|+.||.|++||+.++. ....+. .+ ..
T Consensus 93 ~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~ 165 (357)
T 3i2n_A 93 HIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKR 165 (357)
T ss_dssp EEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCC
T ss_pred EEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCC
Confidence 999998762 134455689999999955 6789999999999999999999886 566665 33 34
Q ss_pred CeEEEE----EecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC----CCEEEEEeCCCeEEEEECCCCE
Q psy3053 758 SVNGVL----FSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG----EEKVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 758 ~V~~v~----fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~----~~~lv~gs~dG~I~vwdl~~~~ 829 (917)
.+.+++ |+|+++.+++++.||.|++||+++++......+...+.+++|+| ...+++|+.+|.|++||+.+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 888998 77899999999999999999999999988888899999999996 4578899999999999998776
Q ss_pred EEEEE-----ecCCCceEEE--eecCC-EEEEEeCCCeEEEEECcCC-------------------eEEEEecCCCCCEE
Q psy3053 830 LLKQV-----RAHKDAVLSL--HFDNC-TMLVGCWDSCVVIYDVECG-------------------RIVTELAGHEDAIS 882 (917)
Q Consensus 830 ~i~~l-----~~h~~~V~si--s~dg~-~Lasgs~DG~I~Iwdl~tg-------------------~~l~~l~~h~~~V~ 882 (917)
....+ .+|...|.++ +++++ ++++|+.||.|++||+.++ +.+..+.+|.++|+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 54443 4899999998 55677 8999999999999999754 46778899999999
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEecCcc
Q psy3053 883 CVAWDEKRKRLI-SGNLVGAPKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~La-Sgs~DG~V~IWdl~~~ 910 (917)
+++|+|++++|+ +|+.||.|++|++...
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999998 8999999999999753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=317.09 Aligned_cols=286 Identities=11% Similarity=0.132 Sum_probs=242.5
Q ss_pred cccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeC-CCCEEEEEeccc
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILP-DNCTMLVGCWDS 644 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~sp-d~~~Lasgs~Dg 644 (917)
..+....+.+|.+.|++++|+|+| ++|++|+.||.|++||+.+++....+. .|...|.+++|+| ++..+++|+.||
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345667889999999999999999 999999999999999999888776665 5899999999999 779999999999
Q ss_pred EEEEEEeccCeeeEEecc---CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 645 CVVIYDVECGRIVTELAG---HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~---H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|++||+.+ .....+.. |...|.+++|+|++++|++|+.||.|++||+... .......|...|.+++|
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH--------EIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--------EEEEEECSSSCEEEEEE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--------EEEEeccCCCcEEEEEE
Confidence 999999986 44455544 4588999999999999999999999999998432 45556789999999999
Q ss_pred eCCCC-EEEEEECCCeEEEEECCC----CeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 722 SKDNN-QLAVGTEAGELIIWSLEN----HLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 722 spdg~-~Lasgs~dG~I~iwDl~~----~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+|+++ ++++|+.||.|++||+++ +..+..+ .|...|.+++|+| ++..|++++.|+.|++||+++++......
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99998 999999999999999997 5566665 4889999999999 99999999999999999998875543322
Q ss_pred -c-----------------CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec--CCCceEEE--eecCCEEEE
Q psy3053 796 -F-----------------EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA--HKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 796 -~-----------------~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~--h~~~V~si--s~dg~~Las 853 (917)
+ ...+.++++++++.+ +|+.||.|++||+.+++.+..+.+ |...+.++ ++++++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 1 134455666776666 778899999999999999999987 45666654 779999999
Q ss_pred EeCCCeEEEEECcC
Q psy3053 854 GCWDSCVVIYDVEC 867 (917)
Q Consensus 854 gs~DG~I~Iwdl~t 867 (917)
|+ ||.|++||+++
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=343.39 Aligned_cols=331 Identities=16% Similarity=0.188 Sum_probs=270.5
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+..+ .+.+..+.+|.++|++++|+|+|++|++|+.||.|++||+.+++.+..+..|...|.+++|+|+++.|++|+
T Consensus 38 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 38 EIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp EEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 5787544 356778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeccC-eeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 642 WDSCVVIYDVECG-RIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
.||.|++||+.++ .....+.+|...|.+++|+| +++.+++++.||+|++||+.++. ........+...+.++
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST------PNFTLTTGQERGVNYV 190 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS------CSEEEECCCTTCCCEE
T ss_pred CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------ceeEEecCCCCCEEEE
Confidence 9999999999987 77788899999999999999 88999999999999999997652 1222233455889999
Q ss_pred EEeC--CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-
Q psy3053 720 AISK--DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF- 796 (917)
Q Consensus 720 ~~sp--dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~- 796 (917)
+|+| ++..+++|+.||.|++||+.+++.+..+. .|...|.+++|+|+|..+++++.||.|++||+.+++.......
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 9999 99999999999999999999999988887 7889999999999999999999999999999999988776654
Q ss_pred CCceEEEEEeCCCE--EEEEeCCCeEEEEECCCCE----------EEEE-------------------------------
Q psy3053 797 EEKLLCLSWAGEEK--VILGGALGMVYLVDLIQVQ----------LLKQ------------------------------- 833 (917)
Q Consensus 797 ~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~~~~----------~i~~------------------------------- 833 (917)
...+.+++|+|++. +++++.++.+.+|++.... .+..
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQT 349 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCC
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeee
Confidence 57899999999875 5667778888899876432 2211
Q ss_pred --EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 834 --VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 834 --l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+..+...+.++ +|+|+++++++ ||.+.+|++....... .+.|.+++|+|+|+++++++.||.|++|+
T Consensus 350 ~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-----~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 350 KELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-----FGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp EEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-----EEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred ecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-----CCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 11233334455 77999999988 8999999976543321 23344555555555555555555555554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=315.45 Aligned_cols=287 Identities=18% Similarity=0.241 Sum_probs=239.0
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
..+|...+...++++++..+++++.||.|++|++.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 346766655544554556688999999999999999998877766 7888999999999999999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
+.+..+.+|...|.+++|+ ++.+++|+.||.|++||+... ........+|...|.+++|+|+++.+++|+.|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 9999999999999999995 589999999999999999754 12345567899999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE-EEEEe--CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR-VLSCG--NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~-L~s~s--~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
|.|++||+++++....+. .|...|.+++|+|++.. +++++ .|+.|++||+.+++.+....+...+.+++|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s----- 312 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWS----- 312 (401)
T ss_dssp SCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEEC-----
T ss_pred CeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEEC-----
Confidence 999999999999888887 78999999999997754 44544 5889999998887766554444444444443
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEE--EeCCCeEEEEECcCCeEEE--EecCCCCCEEEEEEc
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIVT--ELAGHEDAISCVAWD 887 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Las--gs~DG~I~Iwdl~tg~~l~--~l~~h~~~V~slafS 887 (917)
++++.+++ |+.||.|++||+.+++... .+.+|.+.|.+++|+
T Consensus 313 ----------------------------------~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 313 ----------------------------------PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp ----------------------------------SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred ----------------------------------CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 45666777 4478999999988866544 467899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCcc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|+|++|++++.||.|++|++...
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC-
T ss_pred CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999999754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=319.62 Aligned_cols=255 Identities=19% Similarity=0.303 Sum_probs=232.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+..++ +....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.+++|+
T Consensus 133 ~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 133 KVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp EEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 68886543 56788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|++|++||+.++.++..+.+|...|.++++++++.+|++|+.||+|++||+.++ .......+|...|.+++|
T Consensus 212 ~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-------ECKAELREHRHVVECISW 284 (410)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------ceeeEecCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999775 234456689999999999
Q ss_pred eCC--------------------CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q psy3053 722 SKD--------------------NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLN 781 (917)
Q Consensus 722 spd--------------------g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~ 781 (917)
+|+ +.++++|+.||.|++||++++..+..+. +|...|.+++|+|+|++|++|+.||.|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 996 6789999999999999999999999888 8999999999999999999999999999
Q ss_pred EEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEEC
Q psy3053 782 VYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDL 825 (917)
Q Consensus 782 iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl 825 (917)
+||+.+++.+..+. +...|.+++|++++ .+++|+.||.|++|++
T Consensus 364 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999887766654 66789999999865 5778888999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=306.89 Aligned_cols=258 Identities=21% Similarity=0.270 Sum_probs=234.4
Q ss_pred cccccCCcc-ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE
Q psy3053 561 SNSWCDKSI-LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 561 ~~~w~~~~~-l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las 639 (917)
.++|+.... ......+.+|...|.++++++++..+++++.|++|++||+.+++.+..+..+...+.+++|+|++++|++
T Consensus 60 v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 139 (321)
T 3ow8_A 60 VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139 (321)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEE
T ss_pred EEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 368875432 3445678999999999999999999999999999999999999999999989889999999999999999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
|+.||.|++|++++++....+..|...|.+++|+|++++|++|+.||.|++||+.++ .......+|..+|.++
T Consensus 140 g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l 212 (321)
T 3ow8_A 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-------KLLHTLEGHAMPIRSL 212 (321)
T ss_dssp ECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCCCEE
T ss_pred EcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------cEEEEEcccCCceeEE
Confidence 999999999999999999999999999999999999999999999999999999876 3344566789999999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCC
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-VFEE 798 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~ 798 (917)
+|+|++++|++|+.||.|++||++++.....+. +|...|.+++|+|++.+|++++.|++|++||+.+++.+..+ .+..
T Consensus 213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291 (321)
T ss_dssp EECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999888887 89999999999999999999999999999999999988775 4677
Q ss_pred ceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 799 KLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 799 ~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
.|.+++|++++ .+++++.||.|++||..
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999865 58888999999999863
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-33 Score=313.14 Aligned_cols=297 Identities=13% Similarity=0.165 Sum_probs=248.9
Q ss_pred ceEEEeccCCceeeeeeccccceEEEEEeCCCC-EEEEEecccEEEEEEe----ccCe------eeEEecc---------
Q psy3053 603 MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDV----ECGR------IVTELAG--------- 662 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl----~tg~------~i~~l~~--------- 662 (917)
.+.+|++...........|..+|.+++|+|+++ +||+|+.||.|++|++ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 446787766555555556678999999999999 9999999999999999 8887 4555544
Q ss_pred -CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 663 -HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 663 -H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
|.+.|++++|+|++++|++|+.||.|++||... ........|...|.+++|+|+++.+++++.||.|++||
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence 688999999999999999999999999999432 24455667899999999999999999999999999999
Q ss_pred CCCCeeeEEecCCCCCC---------------eEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCceEEEEE
Q psy3053 742 LENHLMTQQLSDDINAS---------------VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-VFEEKLLCLSW 805 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~---------------V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~~i~~l~~ 805 (917)
+.+++.+..+. .+... +.+++|+|++ .+++++.+|.|++||+.+++.+... .+...+.+++|
T Consensus 178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 178 VISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255 (425)
T ss_dssp TTTTEEEEEEC-CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE
T ss_pred CCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE
Confidence 99999888877 44444 8999999986 6889999999999999988776555 46778999999
Q ss_pred eCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 806 AGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 806 s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
++++ .+++++.+|.|++||+.+++.+..+.+|...|.++ ++++ .+++++.||.|++||+.+++.+..+..|...|.
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 9865 68889999999999999999999999999999999 4466 999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 883 CVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++|+|++++|++++.||.|++|++...
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999999999743
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=341.48 Aligned_cols=312 Identities=11% Similarity=0.066 Sum_probs=226.7
Q ss_pred EeCCCcEEEEEecCCceEEEeccCCcee----eeeeccccceEEEEEeCC------CCEEEEEecccEEEEEEeccCee-
Q psy3053 588 ICGEGISVASVGRDAMLKIHSLKTGRQE----RSAVLSSMTLSSLCILPD------NCTMLVGCWDSCVVIYDVECGRI- 656 (917)
Q Consensus 588 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~~~~~~~~V~sl~~spd------~~~Lasgs~Dg~I~Iwdl~tg~~- 656 (917)
.+|+++.+++++.|++|+||++.+++.. ..+..|...|.+++|+|+ +.+||+|+.||+|++||+.+++.
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 3566667777889999999999887643 335567788999999996 57999999999999999987642
Q ss_pred ----------eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE--EEeCC
Q psy3053 657 ----------VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL--AISKD 724 (917)
Q Consensus 657 ----------i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l--~~spd 724 (917)
...+.+|...|++++|+++ ..|++|+.||+|++||+.++. ........|...|.++ +++++
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~~ 321 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSDF 321 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCTT
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCCC
Confidence 2367889999999999986 589999999999999997641 1223356899999999 56888
Q ss_pred C-CEEEEEECCCeEEEEECCCCeeeEEecCCCC--CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCce
Q psy3053 725 N-NQLAVGTEAGELIIWSLENHLMTQQLSDDIN--ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKL 800 (917)
Q Consensus 725 g-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~--~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i 800 (917)
+ .+|++|+.||+|++||+++++....+. +|. ..|.+++|+|+++.+++++.|++|++||++++.... ...+.+.|
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V 400 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTI 400 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCE
T ss_pred CCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCce
Confidence 7 899999999999999999887665554 333 358899999999999999999999999999887643 34578899
Q ss_pred EEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEec-----CCCceEEE--eecCCEEEEEeCCCeEEEEECc-CCeEE
Q psy3053 801 LCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRA-----HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVE-CGRIV 871 (917)
Q Consensus 801 ~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~-----h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~-tg~~l 871 (917)
.+++|+|++ .+++|+.||+|++||+... .+..... +...+.++ +++++.+ .... .+.+|+.. ++..+
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~--~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS--SYEVYPLTVNDVSK 476 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECC--CCCCCC--------
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccC--CceecccccCCcce
Confidence 999999876 4789999999999998653 1111110 11235566 6677754 2222 23344433 57788
Q ss_pred EEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEecCcce
Q psy3053 872 TELAGHEDAISCVAWDEKRK---RLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 872 ~~l~~h~~~V~slafSpdg~---~LaSgs~DG~V~IWdl~~~l 911 (917)
..+.+|..+|.+++|+|++. .+|+|+.||.|+||++.+..
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 88999999999999999964 99999999999999998764
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=310.32 Aligned_cols=289 Identities=14% Similarity=0.207 Sum_probs=240.4
Q ss_pred eeeccCCcceEEEEEeCCCcEE-EEEec---CCceEEEeccCCceeeee-eccccceEEEEEeCC---CCEEEEEecccE
Q psy3053 574 HFCHSHKEAITAVAICGEGISV-ASVGR---DAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPD---NCTMLVGCWDSC 645 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~L-asgs~---Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~spd---~~~Lasgs~Dg~ 645 (917)
..+++|.+.|++++|+|++..+ ++|+. ||.|++|++.+++..... ..|..+|.+++|+|+ +.++++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4568899999999999999655 55655 999999999988765443 368889999999998 699999999999
Q ss_pred EEEEEeccCe-eeEEeccCCCceeEEE------ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC----CC
Q psy3053 646 VVIYDVECGR-IVTELAGHEDAISCVA------WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL----DN 714 (917)
Q Consensus 646 I~Iwdl~tg~-~i~~l~~H~~~Vt~l~------~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h----~~ 714 (917)
|++||+.+++ .+..+.+|.+.|.+++ |+|+++.|++|+.||+|++||+.++.. .......+ ..
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------PVANMEPVQGENKR 165 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS------CSEEECCCTTSCCC
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC------cceeccccCCCCCC
Confidence 9999999988 8889999999999995 467899999999999999999987621 12222222 34
Q ss_pred ceEEEE----EeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCC
Q psy3053 715 RIKCLA----ISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE---DGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 715 ~V~~l~----~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp---dg~~L~s~s~Dg~I~iwDl~t 787 (917)
.+.+++ |+|+++.+++|+.||.|++||+++++..... .+...|.+++|+| ++..+++++.||.|++||+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 788888 6789999999999999999999999876554 5788999999999 999999999999999999987
Q ss_pred CeEEEEe------ecCCceEEEEEeCCCE--EEEEeCCCeEEEEECCCC-------------------EEEEEEecCCCc
Q psy3053 788 GMQVCNK------VFEEKLLCLSWAGEEK--VILGGALGMVYLVDLIQV-------------------QLLKQVRAHKDA 840 (917)
Q Consensus 788 g~~i~~~------~~~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~~~-------------------~~i~~l~~h~~~ 840 (917)
++..... .+...+.+++|+|++. +++|+.||.|++||+..+ +.+..+.+|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 6543222 5778899999999864 788999999999999753 567888999999
Q ss_pred eEEE--eecCCEEE-EEeCCCeEEEEECcCCeE
Q psy3053 841 VLSL--HFDNCTML-VGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 841 V~si--s~dg~~La-sgs~DG~I~Iwdl~tg~~ 870 (917)
|.++ ++++++++ +|+.||.|++||+.+.+.
T Consensus 324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999 56888888 899999999999987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.47 Aligned_cols=321 Identities=14% Similarity=0.110 Sum_probs=237.0
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC--ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG--RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..++.|.++|++++|+|+|++|++|+.||.|++|++.++ +....+..|...|.+++|+|++++|++|+.||+|++||+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345667889999999999999999999999999999988 778888999999999999999999999999999999999
Q ss_pred ccCe---eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc-CCCceEEEEEeCCCCE
Q psy3053 652 ECGR---IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD-LDNRIKCLAISKDNNQ 727 (917)
Q Consensus 652 ~tg~---~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~ 727 (917)
.+++ ....+.+|...|++++|+|++++|++|+.|++|++||+.++.. ......... |...|.+++|+|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----WWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----ceeeeEeecccCCCeEEEEEcCCCCE
Confidence 9887 6777888999999999999999999999999999999987621 111233444 8999999999999999
Q ss_pred EEEEECCCeEEEEECC------------------CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 728 LAVGTEAGELIIWSLE------------------NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~------------------~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
+++|+.||.|++||+. .++.+..+ .|...|.+++|+|+|++|++++.||.|++||+.+++
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 9999999999999985 24445555 788999999999999999999999999999999886
Q ss_pred E----EEE-eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE--EEEEecCCCc---------------eEEEeec
Q psy3053 790 Q----VCN-KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL--LKQVRAHKDA---------------VLSLHFD 847 (917)
Q Consensus 790 ~----i~~-~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~--i~~l~~h~~~---------------V~sis~d 847 (917)
. +.. ..+...+.+++|++++.+++++.++.+.+|+...... ...+...... ..++.+.
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 5 333 3456779999999998888777787777888764321 1111111100 1111000
Q ss_pred CCEEEEEeCCCeEEEEECcC--CeEEEEecCCCCCEEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q psy3053 848 NCTMLVGCWDSCVVIYDVEC--GRIVTELAGHEDAISCVAWDEKR-K---RLISGNLVGAPKLYAT 907 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~t--g~~l~~l~~h~~~V~slafSpdg-~---~LaSgs~DG~V~IWdl 907 (917)
.........+... .........|.+.|+++++.+.. . .|+|||.||.|++||+
T Consensus 319 -------~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 -------ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred -------cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0001111111110 01122234699999999976543 3 6999999999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.39 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=211.0
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee----eeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS----AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~----~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
...|...|.+++|+|++ .+++|+.||+|+|||+.+++.... ..+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567889999999996 688999999999999999876544 3478999999999999999999999999999999
Q ss_pred ccCeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEE
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLA 729 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~La 729 (917)
.+++.+..+.+|.+.|++++|++++ ..|++|+.|++|++||++++... .......+...+.+++|+|+ +.+++
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----SQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----EECC----CCCEEEEEECSSCTTEEE
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee-----eeeecceeeccceeeeecCCCCcceE
Confidence 9999999999999999999999987 47899999999999999876211 11112345667999999995 57889
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~ 808 (917)
+|+.||.|++||+++++.+..+. +|...|.+++|+|+| ++|++|+.|++|++||+.+++......|.+.|.+++|+|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS
T ss_pred EeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC
Confidence 99999999999999999999988 899999999999998 5799999999999999999998888888999999999986
Q ss_pred C--EEEEEeCCCeEEEEECCCCE
Q psy3053 809 E--KVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 809 ~--~lv~gs~dG~I~vwdl~~~~ 829 (917)
+ .+++++.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 5 35678899999999997654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=312.17 Aligned_cols=277 Identities=14% Similarity=0.199 Sum_probs=229.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
.+..|+||++ +.||+| .|++|+|||..+|+..+.+. .|...|++++|+|+|++||+|+.||+|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999976 466665 59999999999999877665 4667899999999999999999999999999999999999
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
+.+|...+.+++++ +..|++|+.|+.+++||.... ........+|...+.++.++|++..+++++.||.+++
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc------ceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 99999999999886 489999999999999998764 2234456789999999999999999999999999999
Q ss_pred EECCCCee----eEEecCCCCCCeEEEEEecCCC-EEEEE--eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 740 WSLENHLM----TQQLSDDINASVNGVLFSEDGC-RVLSC--GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 740 wDl~~~~~----~~~l~~~h~~~V~~v~fspdg~-~L~s~--s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
|+..+++. +.... .|...|.+++|+|++. .++++ +.|++|++||+.++...........+.++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~------- 328 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW------- 328 (420)
T ss_dssp EESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE-------
T ss_pred Eeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee-------
Confidence 99987653 33344 6889999999999654 44443 3577777777777665544443333333333
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe--CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC--WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs--~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+++++.+++++ .||.|++||+.+++++.++.+|.+.|++++|+|||
T Consensus 329 --------------------------------~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg 376 (420)
T 4gga_A 329 --------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 376 (420)
T ss_dssp --------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred --------------------------------cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 44566666554 78999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q psy3053 891 KRLISGNLVGAPKLYATE 908 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl~ 908 (917)
++||||+.||+|+|||+.
T Consensus 377 ~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 377 ATVASAAADETLRLWRCF 394 (420)
T ss_dssp SCEEEEETTTEEEEECCS
T ss_pred CEEEEEecCCeEEEEECC
Confidence 999999999999999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.33 Aligned_cols=302 Identities=13% Similarity=0.118 Sum_probs=233.7
Q ss_pred ceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCcee--eeeeccccceEEEEEeC-CCCEEEEEecccEEE
Q psy3053 572 PLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQE--RSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVV 647 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~--~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~ 647 (917)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|...|.+++|+| ++.+|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3455678999999999999 5679999999999999999877644 44567999999999998 688999999999999
Q ss_pred EEEeccCeeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 648 IYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+||++++........ +...+.+++|+|++.+|++|+.||+|++||++.. ......+|...|.+++|+|++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEEECTTC
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeeeecCCC
Confidence 999987655444333 3456789999999999999999999999998653 334456789999999999987
Q ss_pred C-EEEEEECCCeEEEEECCCCeeeEEec--CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CC---
Q psy3053 726 N-QLAVGTEAGELIIWSLENHLMTQQLS--DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF-EE--- 798 (917)
Q Consensus 726 ~-~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-~~--- 798 (917)
. ++++|+.||.|++||+++.+....+. .+|...|.+++|+|+|.+|++++.||.|++||+.++........ ..
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc
Confidence 6 78899999999999998876544332 36889999999999999999999999999999998765443221 11
Q ss_pred ---ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEE-eCCCeEEEEECcCCeEEEEe
Q psy3053 799 ---KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVG-CWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 799 ---~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasg-s~DG~I~Iwdl~tg~~l~~l 874 (917)
.+....|++++.++ +.+.++++..++++ ..++.|++||..+++.+..+
T Consensus 343 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLI----------------------------VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SSSCCCBCEECSSSSCE----------------------------EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred ccceeEEEEEcCCCCEE----------------------------EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 01112222221111 01113344444443 34568999999999998886
Q ss_pred c-CCCCCEEEE-EEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 875 A-GHEDAISCV-AWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 875 ~-~h~~~V~sl-afSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
. +|...|.++ +|+|+|++|++|+ |+.|+||+++..
T Consensus 395 ~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 395 YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 4 688888887 6999999999876 889999999854
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=313.56 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=256.0
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEeccCeeeEEec-------------cCCC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECGRIVTELA-------------GHED 665 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-------------~H~~ 665 (917)
.++.+++|+++.++....+.+|..+|.+++|+| ++++|++|+.||.|++||+.+++....+. +|..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 356688899988888888899999999999999 99999999999999999999886655443 5999
Q ss_pred ceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEECCCeEEEEE
Q psy3053 666 AISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTEAGELIIWS 741 (917)
Q Consensus 666 ~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwD 741 (917)
.|++++|+| ++.+|++++.||.|++||+.++ .......+...+.++++++. +..+++|+.+|.|.+||
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 999999999 7789999999999999999876 33444557888999999985 45999999999999999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCe-EEEE----------------eecCCceEEE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTTGM-QVCN----------------KVFEEKLLCL 803 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~-~i~~----------------~~~~~~i~~l 803 (917)
+++++.+..+. .|...|.+++|+|++. .+++++.||.|++||++++. .... ..+...+.++
T Consensus 173 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999888887 7899999999999998 58899999999999998764 2222 2356779999
Q ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCC------CceEEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 804 SWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHK------DAVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 804 ~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~------~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+|++++ .+++++.||.|++||+.+++......++. ...... ...+..+++++.||.|++||+.+++.+..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 999876 58889999999999999887654443221 111222 2345667778889999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|.+.|++++|+|++++|++|+.||.|++|+++..
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=310.40 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=219.0
Q ss_pred CcceEEEEEeCCCcEEEEEecCC-------ceEEEeccCCcee----------eeeeccccceEEEEEeCCCCEEEEE--
Q psy3053 580 KEAITAVAICGEGISVASVGRDA-------MLKIHSLKTGRQE----------RSAVLSSMTLSSLCILPDNCTMLVG-- 640 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg-------~I~IWd~~t~~~~----------~~~~~~~~~V~sl~~spd~~~Lasg-- 640 (917)
.-||.+++|+|||++|++||.|. .|++|++..+... ..+..+...+.++++ +++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 35899999999999999998644 4999998765432 124456666777655 45566665
Q ss_pred ---------ecccEEEEEEeccCeee----EEe-----ccCCCceeEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCc
Q psy3053 641 ---------CWDSCVVIYDVECGRIV----TEL-----AGHEDAISCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHM 700 (917)
Q Consensus 641 ---------s~Dg~I~Iwdl~tg~~i----~~l-----~~H~~~Vt~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~ 700 (917)
+.|+.+++|++.++... ... ..+...+.+++|+|||+++++|+ .|++|++||+.++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---- 167 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---- 167 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----
Confidence 45788999998765321 111 23456689999999999987655 7899999999876
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeE-EecCCCCCCeEEEEEecCCCEEEEEeCCC-
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ-QLSDDINASVNGVLFSEDGCRVLSCGNNC- 778 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~Dg- 778 (917)
.......|...|.+++|+|+|+++++++.+ .+.+|+..++.... .....|...|.+++|+|+|+.+++++.|+
T Consensus 168 ----~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 168 ----TEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp ----EEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred ----cEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 333345688899999999999999999865 46666666665544 34446888999999999999999998876
Q ss_pred ---eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEE
Q psy3053 779 ---MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 779 ---~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Las 853 (917)
.+++|++..+.... .....+.+|...|+++ +|+|++||+
T Consensus 243 ~~~~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSV------------------------------------LRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CCEEEEEEEEETTEEEE------------------------------------EEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred ceeEEeecccccceecc------------------------------------eeeeeecCCCCCeEeEEECCCCCceEE
Confidence 46666654432210 1234566788889887 679999999
Q ss_pred EeCCCeEEEEECcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 854 GCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
|+.||+|+|||+.+++++..+ .+|..+|++++|||||++|||||.|++|+||++.
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999999885 7899999999999999999999999999999995
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=292.93 Aligned_cols=277 Identities=15% Similarity=0.211 Sum_probs=226.1
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..+|+||+++ .||+| .|++|+|||+.+++.++.+. .|...|.+++|+|+++++++|+.||+|++|++++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 56654 69999999999999887765 46678999999999999999999999999999999999999
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
.+|...+.++.+. +..+++|+.++.+++|+.... ........+|...+.+++++++++.+++++.||.|++|
T Consensus 106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCccceEEEeecC--CCEEEEEecCCceEeeecCCC------ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 9999998877665 589999999999999998765 23444567899999999999999999999999999999
Q ss_pred ECCCCeee----EEecCCCCCCeEEEEEecCCCEEE---EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEE
Q psy3053 741 SLENHLMT----QQLSDDINASVNGVLFSEDGCRVL---SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 741 Dl~~~~~~----~~l~~~h~~~V~~v~fspdg~~L~---s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~ 813 (917)
|+++++.. .... .+.+.|.+++++|++..++ +++.++.|++||...+.......+...+.++.+
T Consensus 178 d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~-------- 248 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW-------- 248 (318)
T ss_dssp ESSCBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE--------
T ss_pred ECCCCcccccceeeec-ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee--------
Confidence 99876532 2222 5778899999999765433 445667777777766654443333333333332
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEE--eCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVG--CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasg--s~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~ 891 (917)
+++++.++++ +.||.|++||+.+++++.++.+|.+.|++++|+|+|+
T Consensus 249 -------------------------------~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~ 297 (318)
T 4ggc_A 249 -------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 297 (318)
T ss_dssp -------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred -------------------------------cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 4455555554 4799999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEecCc
Q psy3053 892 RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 892 ~LaSgs~DG~V~IWdl~~ 909 (917)
+|||||.||+|+|||+..
T Consensus 298 ~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTEEEEECCSC
T ss_pred EEEEEecCCeEEEEECCC
Confidence 999999999999999853
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=320.35 Aligned_cols=283 Identities=14% Similarity=0.269 Sum_probs=246.5
Q ss_pred ceEEEEEeCCCC-EEEEE----------ecccEEEEEEeccCe---eeEEeccCCCceeEEEecCCCCEEEEEECCCeEE
Q psy3053 624 TLSSLCILPDNC-TMLVG----------CWDSCVVIYDVECGR---IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVR 689 (917)
Q Consensus 624 ~V~sl~~spd~~-~Lasg----------s~Dg~I~Iwdl~tg~---~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~ 689 (917)
.+.+++|+|+++ ++++| +.|+.|++||+.++. .+..+ .|...|++++|+|++++|++|+.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 578899999987 99999 889999999999875 33333 5899999999999999999999999999
Q ss_pred EEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCCCe------eeEEe--cCCCCCCeE
Q psy3053 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLENHL------MTQQL--SDDINASVN 760 (917)
Q Consensus 690 vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~------~~~~l--~~~h~~~V~ 760 (917)
+||+..... .........+|...|.+++|+|+ ++++++|+.||.|++||+.+++ ..... ...|...|.
T Consensus 93 vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 93 LYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred Eeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999976311 11244556679999999999998 8999999999999999999876 33322 126888999
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec-------CCceEEEEEeCCC--EEEEEeCCC---eEEEEECCC
Q psy3053 761 GVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF-------EEKLLCLSWAGEE--KVILGGALG---MVYLVDLIQ 827 (917)
Q Consensus 761 ~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-------~~~i~~l~~s~~~--~lv~gs~dG---~I~vwdl~~ 827 (917)
+++|+|+ +..+++++.||.|++||+++++.+..... ...+.+++|++++ .+++++.++ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999998 78999999999999999999998877765 5779999999875 688899998 999999998
Q ss_pred C-EEEEEEe-cCCCceEEEe--e-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCc
Q psy3053 828 V-QLLKQVR-AHKDAVLSLH--F-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR-KRLISGNLVGA 901 (917)
Q Consensus 828 ~-~~i~~l~-~h~~~V~sis--~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg-~~LaSgs~DG~ 901 (917)
+ ..+..+. +|...|.++. + ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 6 6677777 8999999994 4 78999999999999999999999999999999999999999999 89999999999
Q ss_pred EEEEecCcc
Q psy3053 902 PKLYATEFY 910 (917)
Q Consensus 902 V~IWdl~~~ 910 (917)
|++|+++..
T Consensus 330 i~iw~~~~~ 338 (416)
T 2pm9_A 330 IEVQTLQNL 338 (416)
T ss_dssp EEEEESCCC
T ss_pred EEEEEccCC
Confidence 999999753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=298.35 Aligned_cols=307 Identities=11% Similarity=0.107 Sum_probs=231.9
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC----ceeeeeeccccceEEEEEeC--CCCEEEEEecccEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG----RQERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCV 646 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I 646 (917)
...+.+|.+.|++++|+|+|++|++|+.||.|++|++.++ +....+..|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876 35666778999999999999 69999999999999
Q ss_pred EEEEeccC---------eeeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCc------ceeee
Q psy3053 647 VIYDVECG---------RIVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSK------SLVSQ 709 (917)
Q Consensus 647 ~Iwdl~tg---------~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~------~~~~~ 709 (917)
++||+.++ +....+.+|.+.|++++|+|+ +.+|++++.||.|++||+.++........ .....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888899999999999999 99999999999999999987632211100 00112
Q ss_pred ccCCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecCC----CEEEEEeCCCeE
Q psy3053 710 LDLDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHLM--TQQLSDDINASVNGVLFSEDG----CRVLSCGNNCML 780 (917)
Q Consensus 710 ~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg----~~L~s~s~Dg~I 780 (917)
..+...+.+++|+|+ +..+++++.++.+.+|+...+.. ...+. +|...|.+++|+|++ .+|++++.||.|
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 357788999999997 89999999999999888887765 45555 789999999999998 899999999999
Q ss_pred EEEECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCe
Q psy3053 781 NVYDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSC 859 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~ 859 (917)
++||++++......... ......... ......+.....+...+.
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNS-----------------------------------ADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EEEEEEECC-----------------------------------------------------------------------
T ss_pred EEEeCCCCcCccccCCcccceeccCCC-----------------------------------ccccccccccccccccee
Confidence 99998765332110000 000000000 000111111233344556
Q ss_pred EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 860 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+.+|+....+.+..+.+|.+.|++++|+|++++|++|+.||.|++|+++.. .+.++
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 778888888899999999999999999999999999999999999999853 44444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=314.13 Aligned_cols=298 Identities=16% Similarity=0.280 Sum_probs=247.4
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
+....+|...|+++++ +++.+++|+.||.|++||+.+++....+.+|...|.++++ +++.+++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3344567788998877 7899999999999999999999999999999999999988 78899999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
+++.+..+.+|.+.|.+++|++ ..+++|+.||+|++||+.++.. ........+|...|.++++ +++.+++|+
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC----CEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC----ceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 9999999999999999999975 6999999999999999977521 1122445688999999999 688999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~l 811 (917)
.||.|++||+++++.+..+. .|...|.+++++ +..+++|+.||.|++||+++++.+.... +...+.++++++. .+
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l 349 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RI 349 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSS-EE
T ss_pred CCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCC-EE
Confidence 99999999999999999888 889999999984 6799999999999999999998887765 6678999999655 89
Q ss_pred EEEeCCCeEEEEECCCCE---------EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 812 ILGGALGMVYLVDLIQVQ---------LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~---------~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
++|+.||.|++||+.++. .+..+.+|.+.|.++++++..|++|+.||.|++||+.++....... ...+..
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~ 428 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSR 428 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------------------
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCcc
Confidence 999999999999997766 8889999999999999999999999999999999998776554433 233445
Q ss_pred EEEEc
Q psy3053 883 CVAWD 887 (917)
Q Consensus 883 slafS 887 (917)
++.|.
T Consensus 429 ~~~~~ 433 (435)
T 1p22_A 429 TYTYI 433 (435)
T ss_dssp -----
T ss_pred ceeee
Confidence 55554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=305.83 Aligned_cols=284 Identities=20% Similarity=0.373 Sum_probs=252.8
Q ss_pred eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 614 QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
....+.+|...+.. ++.++++++++|+.||+|++||+.+++.+..+.+|.+.|++++|+ ++.+++|+.||+|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34556778776543 356678999999999999999999999999999999999999998 479999999999999999
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
.++ .......+|...|.+++++ ++.+++|+.||.|++||+.+++.+..+. .|...|.++++ ++..+++
T Consensus 187 ~~~-------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 187 ETG-------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp TTT-------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEE
T ss_pred CcC-------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEE
Confidence 876 3445566899999999996 5789999999999999999999988887 78999999999 7889999
Q ss_pred EeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEE
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTML 852 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~La 852 (917)
++.||.|++||+++++.+.... +...+.++++++. .+++|+.||.|++||+.+++.+..+.+|...+.++++++++++
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 333 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 333 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEE
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEE
Confidence 9999999999999998887765 5678999999554 8999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECcCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 853 VGCWDSCVVIYDVECGRIVTELAG---HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 853 sgs~DG~I~Iwdl~tg~~l~~l~~---h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+|+.||.|++||+.+++.+..+.+ |..+|++++|+ +++|++|+.||.|++||+... .+..+
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 999999999999999999999986 88899999996 579999999999999999744 44444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=310.31 Aligned_cols=271 Identities=20% Similarity=0.330 Sum_probs=241.1
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
+...|.++.+ +++.+++|+.||.|++||+.+++....+.+|.+.|++++| +++.|++|+.||+|++||+.++
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---- 203 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---- 203 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC----
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC----
Confidence 4456776655 8999999999999999999999999999999999999999 6789999999999999999876
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee---EEecCCCCCCeEEEEEecCCCEEEEEeCC
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT---QQLSDDINASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~---~~l~~~h~~~V~~v~fspdg~~L~s~s~D 777 (917)
.......+|...|.+++++ ++.+++|+.||.|++||+.++... ..+. +|...|.++++ +++.+++++.|
T Consensus 204 ---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 204 ---EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp ---CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ETTEEEEEETT
T ss_pred ---cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CCCEEEEEeCC
Confidence 3445566889999999997 469999999999999999987655 3444 78999999999 78899999999
Q ss_pred CeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC
Q psy3053 778 CMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW 856 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~ 856 (917)
|.|++||+++++.+.... +...+.+++++++ .+++|+.||.|++||+.+++.+..+.+|...|.++++++.++++|+.
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~ 354 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 354 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeC
Confidence 999999999998887765 6678999999765 99999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECcCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 857 DSCVVIYDVECGR---------IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 857 DG~I~Iwdl~tg~---------~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
||.|++||+.++. ++..+.+|.+.|.+++| ++.+|++|+.||.|++||+...
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 9999999998766 88999999999999999 7889999999999999999754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=295.43 Aligned_cols=257 Identities=13% Similarity=0.169 Sum_probs=222.2
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+.+.... ........+|...|.++.|++++. +++|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++++++
T Consensus 126 ~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 126 LKTREGN---VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp TTTCSBS---CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEE
T ss_pred CccCCCc---ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEE
Confidence 9765211 122334568999999999998875 8899999999999999999998887 8999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT 850 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~ 850 (917)
+|+.|+.|++||++++.. ...+.+|...|.++ +|++++
T Consensus 201 sg~~d~~v~~wd~~~~~~----------------------------------------~~~~~~h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 201 SGACDASAKLWDVREGMC----------------------------------------RQTFTGHESDINAICFFPNGNA 240 (340)
T ss_dssp EEETTSCEEEEETTTCSE----------------------------------------EEEECCCSSCEEEEEECTTSSE
T ss_pred EEeCCCcEEEEECCCCee----------------------------------------EEEEcCCcCCEEEEEEcCCCCE
Confidence 999999999999876543 23445677788777 568899
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYV 914 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~--h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~ 914 (917)
|++|+.||+|++||+++++.+..+.. +...|++++|+|+|++|++|+.||.|++||+... .+..
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence 99999999999999999988877653 3357999999999999999999999999998643 4433
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=310.23 Aligned_cols=297 Identities=14% Similarity=0.141 Sum_probs=247.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+.... +....+..| ..+...++++++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+
T Consensus 81 ~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 158 (420)
T 3vl1_A 81 FLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS 158 (420)
T ss_dssp EEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe
Confidence 56775432 333445555 4556668899999999999999999999999988888889999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec---cC------
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL---DL------ 712 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~---~h------ 712 (917)
.||.|++||+.+++.+..+.+|.+.|++++|+|+++.|++|+.||+|++||+.++. ...... .+
T Consensus 159 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-------TIHTFNRKENPHDGVNS 231 (420)
T ss_dssp TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-------EEEEECBTTBTTCCEEE
T ss_pred CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-------eeEEeecCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999998762 111111 22
Q ss_pred ---------------CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeC
Q psy3053 713 ---------------DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGN 776 (917)
Q Consensus 713 ---------------~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~ 776 (917)
...+.+++|+|+++++++|+.||.|++||+++++....+...|...|.+++|+|++. ++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC
Confidence 345555666889999999999999999999999988888767889999999999999 9999999
Q ss_pred CCeEEEEECCCCeE-EEEee--cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC---------EEEEEEecCCCceEEE
Q psy3053 777 NCMLNVYDLTTGMQ-VCNKV--FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---------QLLKQVRAHKDAVLSL 844 (917)
Q Consensus 777 Dg~I~iwDl~tg~~-i~~~~--~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---------~~i~~l~~h~~~V~si 844 (917)
||.|++||+++++. +.... +...+.++.+.+...+++++.||.|++|++... .....+.+|...|.++
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 391 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF 391 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEE
Confidence 99999999998743 33333 567788888887768899999999999998763 1123355677888777
Q ss_pred --eecCC---EEEEEeCCCeEEEEECcC
Q psy3053 845 --HFDNC---TMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 845 --s~dg~---~Lasgs~DG~I~Iwdl~t 867 (917)
++++. .+++++.+|.+.+|+++.
T Consensus 392 ~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 392 CYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCCCcceEEEEcCCceEEEEeccC
Confidence 67888 788888899999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-31 Score=305.41 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=245.5
Q ss_pred eeeeeccccce-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 615 ERSAVLSSMTL-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 615 ~~~~~~~~~~V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
...+.+|...+ .++. ++++++++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ .+++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~--~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEE--ECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34566777775 4444 467899999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEe--CCCCEEEEEECCCeEEEEECCCCeee-----------------------
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAIS--KDNNQLAVGTEAGELIIWSLENHLMT----------------------- 748 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~Lasgs~dG~I~iwDl~~~~~~----------------------- 748 (917)
.++ .......+|...|.+++++ +++..+++|+.||.|++||+.++...
T Consensus 191 ~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 191 KKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp TTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 876 3444566799999999999 57799999999999999999877532
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 749 QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 749 ~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
..+. +|...+.++ ++++..+++++.||.|++||+.+++.+.... +...+.++++++++ .+++|+.||.|++||+.
T Consensus 264 ~~~~-~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 264 GVLR-GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EEEC-CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EEcc-CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 2333 677777776 6789999999999999999999999887765 67789999999864 68899999999999999
Q ss_pred CCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 827 QVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 827 ~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+++.+..+.+|...|.++.++++++++|+.||.|++||+.++....... |...+..++|++++.+|++|+ ||.|++||
T Consensus 341 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 341 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 9999999999999999999999999999999999999999988776664 677788899999999999998 89999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
++..
T Consensus 419 ~~~g 422 (464)
T 3v7d_B 419 LRSG 422 (464)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=297.11 Aligned_cols=297 Identities=11% Similarity=0.082 Sum_probs=238.6
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeeccccceEEEEEeCCCC-EEEEEecccEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVI 648 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~I 648 (917)
.....+|.+.|++++|+|++++|++++.||.|++|++.++. .......|...|.+++|+|+++ ++++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998877 3455668889999999999999 9999999999999
Q ss_pred EEe-ccCeeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-cCCcceeeeccCCCceEEEEEeCC
Q psy3053 649 YDV-ECGRIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM-KPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 649 wdl-~tg~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
||+ .+++. ..+.+ |...|++++|+| ++.+++++.|+.|++||+.+..... ...........+...|.+++|+++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 999 87755 67788 999999999999 9999999999999999986510000 000011222347889999999988
Q ss_pred CCEEEEEECCCeEEEEECCC-Cee-eEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC------eEEEEee
Q psy3053 725 NNQLAVGTEAGELIIWSLEN-HLM-TQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTG------MQVCNKV 795 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~-~~~-~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg------~~i~~~~ 795 (917)
+ +++|+.+|.|++||+++ +.. .......+...+.+++|+| +++.+++++.||.+++|++..+ +....+.
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 7 99999999999999998 543 2333336788999999999 9999999999999999998764 1111110
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEE
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTE 873 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~ 873 (917)
.. .. . .. -.+|...|.++ ++++++|++|+.||.|++||+.+++.+..
T Consensus 240 ~~---------~~---------~-------~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 240 CH---------RL---------N-------LK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp CC---------CC---------C-------TT------CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cc---------cc---------c-------cc------ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 00 00 0 00 01345588887 55899999999999999999999999999
Q ss_pred ecCC-CCCEEEEEEcCCCCEEEEEeCCCc-EEEEe
Q psy3053 874 LAGH-EDAISCVAWDEKRKRLISGNLVGA-PKLYA 906 (917)
Q Consensus 874 l~~h-~~~V~slafSpdg~~LaSgs~DG~-V~IWd 906 (917)
+.+| .++|++++ |++++|++|+.||. .+.|.
T Consensus 289 ~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 289 FAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9998 99999999 99999999999998 44444
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=310.34 Aligned_cols=318 Identities=12% Similarity=0.185 Sum_probs=237.0
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc-----------eeeeeeccc------------cceEEEEEeCCC
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR-----------QERSAVLSS------------MTLSSLCILPDN 634 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~~~~~~------------~~V~sl~~spd~ 634 (917)
.|.+.|++++|+|+|++||+|+.||.|++|++.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 467788887 889999999998
Q ss_pred --CEEEEEecccEEEEEEeccCeee---------------------------------------EE-eccCCCceeEEEe
Q psy3053 635 --CTMLVGCWDSCVVIYDVECGRIV---------------------------------------TE-LAGHEDAISCVAW 672 (917)
Q Consensus 635 --~~Lasgs~Dg~I~Iwdl~tg~~i---------------------------------------~~-l~~H~~~Vt~l~~ 672 (917)
..+++|+.||+|++||+.++... .. ..+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999875432 12 3689999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCCCCccC-CcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCee---
Q psy3053 673 DEKRKRLISGSWDCTVRVWNTGASWSHMKP-SKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLM--- 747 (917)
Q Consensus 673 spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~--- 747 (917)
+|++++|++| .||+|++||+......... ........+|...|.+++|+|++ +++++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 7999999999743100000 00001245789999999999998 9999999999999999999886
Q ss_pred -eEEecCCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCc--------------
Q psy3053 748 -TQQLSDDINA------------SVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEK-------------- 799 (917)
Q Consensus 748 -~~~l~~~h~~------------~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~~~~~-------------- 799 (917)
...+. .|.. .|.+++|+|+|++|++++. +.|++||+++ ++.+..+.....
T Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 265 HSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 56666 5554 8999999999999999999 9999999987 665555443332
Q ss_pred --eEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 800 --LLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 800 --i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+..++|++++ .+++|+.||.|++||+.+++.+ .+.+|........ ...+.+..++... .........
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 413 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRK--------KDEISVDSL 413 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCC--------TTCEEGGGC
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcc--------ccccccccc
Confidence 2237888765 4778888899999998888765 4444544332111 1122222222110 011111112
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+...|.+++|+|++.+||+++.++ +.+|.-.
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 3567899999999999999998886 7787643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=289.72 Aligned_cols=247 Identities=16% Similarity=0.171 Sum_probs=208.1
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC--CceeeeeeccccceEEEEEeCC--CCEEEEEecccEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVVIY 649 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t--~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~Iw 649 (917)
..+.+|.+.|++++|+|+|++||+|+.|++|++|++.+ ++.+..+.+|..+|.+++|+++ +++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 3667888999999999999864 8999999999999999
Q ss_pred EeccCe--eeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-
Q psy3053 650 DVECGR--IVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD- 724 (917)
Q Consensus 650 dl~tg~--~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 724 (917)
|+.+++ .+..+.+|...|.+++|+|+ +.+|++|+.||+|++||+..... .......+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-----BCCEEEECCSSCEEEEEECCCC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-----eeeeeeecccCccceEeecCCc
Confidence 999874 56678889999999999997 88999999999999999876421 112345678999999999997
Q ss_pred ------------CCEEEEEECCCeEEEEECCCCe----eeEEecCCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEEC
Q psy3053 725 ------------NNQLAVGTEAGELIIWSLENHL----MTQQLSDDINASVNGVLFSEDG---CRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 725 ------------g~~Lasgs~dG~I~iwDl~~~~----~~~~l~~~h~~~V~~v~fspdg---~~L~s~s~Dg~I~iwDl 785 (917)
++.|++|+.||.|++||++++. ....+. +|...|.+++|+|++ .+|++++.|++|++||+
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999998765 455565 899999999999984 89999999999999999
Q ss_pred CCCe---EEEE---eecCCceEEEEEeCCCE-EEEEeCCCeEEEEECC
Q psy3053 786 TTGM---QVCN---KVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLI 826 (917)
Q Consensus 786 ~tg~---~i~~---~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~ 826 (917)
.++. .... ..+...+.+++|+|++. +++++.||.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 7642 1111 23456788888887654 6677888888888865
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=294.13 Aligned_cols=289 Identities=13% Similarity=0.176 Sum_probs=242.5
Q ss_pred EeccCCceeeeeeccccceEEEEEeCC---CCEEEEEecccEEEEEEecc-Ceee-EEeccCCCceeEEEecCCCCEEEE
Q psy3053 607 HSLKTGRQERSAVLSSMTLSSLCILPD---NCTMLVGCWDSCVVIYDVEC-GRIV-TELAGHEDAISCVAWDEKRKRLIS 681 (917)
Q Consensus 607 Wd~~t~~~~~~~~~~~~~V~sl~~spd---~~~Lasgs~Dg~I~Iwdl~t-g~~i-~~l~~H~~~Vt~l~~spd~~~L~S 681 (917)
|+....+.+..+..|...|.+++|+|+ +++|++|+.||.|++||+.+ +..+ ..+.+|.+.|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 344556677788899999999999999 59999999999999999997 5554 788899999999999999999999
Q ss_pred EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE--eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe
Q psy3053 682 GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759 (917)
Q Consensus 682 gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V 759 (917)
|+.||.|++||+.++ .......|...|.+++| ++++.++++|+.||.|++||+++++.+..+. . ...+
T Consensus 104 ~~~dg~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-~~~~ 173 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-L-PERC 173 (368)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-C-SSCE
T ss_pred EcCCCcEEEEEcCCC--------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-c-CCCc
Confidence 999999999999876 34446679999999999 8999999999999999999999999888887 3 3456
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCceEEEEEe--CC---CEEEEEeCCCeEEEEECCCC---
Q psy3053 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV---FEEKLLCLSWA--GE---EKVILGGALGMVYLVDLIQV--- 828 (917)
Q Consensus 760 ~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~---~~~~i~~l~~s--~~---~~lv~gs~dG~I~vwdl~~~--- 828 (917)
.++.+. +..+++++.++.+.+|++.......... ......++++. +. ..+++++.+|.|++||+...
T Consensus 174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 174 YCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred eEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 666665 4588899999999999998765443322 23445555554 22 13999999999999999987
Q ss_pred EEEEEEecCCC------------ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE
Q psy3053 829 QLLKQVRAHKD------------AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI 894 (917)
Q Consensus 829 ~~i~~l~~h~~------------~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La 894 (917)
..+..+.+|.. .|.++ ++++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|+|++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence 55667777765 68888 66899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEec
Q psy3053 895 SGNLVGAPKLYAT 907 (917)
Q Consensus 895 Sgs~DG~V~IWdl 907 (917)
+|+.|+..+.|++
T Consensus 332 ~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 332 YASSYDWSKGHEF 344 (368)
T ss_dssp EEECCCSTTCGGG
T ss_pred EEecccccccccc
Confidence 9999986555554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=306.11 Aligned_cols=266 Identities=12% Similarity=0.144 Sum_probs=224.2
Q ss_pred EEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC
Q psy3053 605 KIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW 684 (917)
Q Consensus 605 ~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~ 684 (917)
..|+..+..+.+.+.+|...|.+++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~ 128 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL 128 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 34555556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEec----CCCCCCe
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLS----DDINASV 759 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~----~~h~~~V 759 (917)
|+.|++||+.+...............+|.+.|.+++|+|++ ..+++|+.||+|++||+.+++.+..+. .+|...|
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 99999999976532222222333456899999999999974 579999999999999999998887662 3678889
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 760 NGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 760 ~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
.+++|++ ++..+++|+.|++|++||++.. ++.+..+.+|.
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---------------------------------------~~~~~~~~~h~ 249 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRIT---------------------------------------SRAVRTYHGHE 249 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTT---------------------------------------CCCCEEECCCS
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCC---------------------------------------CcceEEECCcC
Confidence 9999977 7888889988988888887632 12234556788
Q ss_pred CceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 839 DAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-------DAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 839 ~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-------~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.|.++ +|++++|++|+.||+|++||+++++.+..+..+. ..|++++|+|+|++|++|+.||.|++||+..
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 888887 5688999999999999999999999888876543 2489999999999999999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=289.97 Aligned_cols=261 Identities=15% Similarity=0.141 Sum_probs=221.0
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+.+.+|...|.+++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCR 770 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~ 770 (917)
+....... ..........|...|.+++|+|++..+++|+.||+|++||+++++.+..+. +|...|.+++++| +|..
T Consensus 135 ~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNEN-MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCC-SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCE
T ss_pred Eecccccc-ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCE
Confidence 86542111 112334456799999999999999999999999999999999999998887 8889999999987 4678
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC
Q psy3053 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 771 L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++|+.||.|++||+++++ ++..+.+|...|.++ +|++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQ----------------------------------------CVQAFETHESDVNSVRYYPSG 252 (354)
T ss_dssp EEEEETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEECTTS
T ss_pred EEEEeCCCeEEEEECCCCc----------------------------------------EEEEecCCCCCeEEEEEeCCC
Confidence 8888888888888776654 334455678888877 5578
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEE
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAGH--EDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVL 915 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h--~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~L 915 (917)
..+++|+.||+|++||+++++.+..+..+ ...+++++|+|+|++|++|+.||.|++||+. +..+..+
T Consensus 253 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 99999999999999999998887776544 3578999999999999999999999999995 4444443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=286.22 Aligned_cols=251 Identities=16% Similarity=0.187 Sum_probs=220.4
Q ss_pred eeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
.+..++.+|.+.|++++|+|++ ++|+||+.|++|++|++..... ..........+|...|.+++|+|+++++++|+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--cccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3456789999999999999964 8999999999999999864311 111234456789999999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC----
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE---- 809 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~---- 809 (917)
||+|++||+.+++.+..+. +|...|.+++|+|++..+++++.|++|++||++.........+...+.++.+.|..
T Consensus 86 D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-----
T ss_pred CCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 9999999999999998888 89999999999999999999999999999999866555556677889999998743
Q ss_pred ---EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE
Q psy3053 810 ---KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 884 (917)
Q Consensus 810 ---~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl 884 (917)
.+++++.|+.|++||+.+++....+.+|...|.++ +|++++|++|+.||.|++||+.+++.+..+..+ ..|.++
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 58999999999999999999999999999999998 668999999999999999999999999988854 689999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 885 AWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 885 afSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|+|++.+|++++.++ +++|+++..
T Consensus 244 ~~sp~~~~la~~~~~~-i~v~~~~~~ 268 (319)
T 3frx_A 244 AFSPNRYWLAAATATG-IKVFSLDPQ 268 (319)
T ss_dssp EECSSSSEEEEEETTE-EEEEEETTE
T ss_pred EEcCCCCEEEEEcCCC-cEEEEeCcC
Confidence 9999999999988664 999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-31 Score=294.59 Aligned_cols=269 Identities=15% Similarity=0.174 Sum_probs=218.0
Q ss_pred cccccCCcccc--ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCE
Q psy3053 561 SNSWCDKSILE--PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCT 636 (917)
Q Consensus 561 ~~~w~~~~~l~--~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~ 636 (917)
.++|+...... ......+|.+.|++++|+|+|++|++|+.|+++++|+..++. .+..+.+|...|.+++|+|++++
T Consensus 40 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 119 (345)
T 3fm0_A 40 IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119 (345)
T ss_dssp EEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE
Confidence 36887554321 122347899999999999999999999999999999988764 56778899999999999999999
Q ss_pred EEEEecccEEEEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 637 MLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
|++|+.|++|++||+.++ ..+..+.+|...|.+++|+|++++|++|+.|++|++||...+. ........+|.
T Consensus 120 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-----~~~~~~~~~h~ 194 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-----WVCCATLEGHE 194 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-----EEEEEEECCCS
T ss_pred EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-----EEEEEEecCCC
Confidence 999999999999999876 3466788999999999999999999999999999999986541 11234567899
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCC---------------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENH---------------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~---------------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
..|.+++|+|+|++|++|+.||+|++||.... +.+..+...|...|.+++|+|++..+++++.|+
T Consensus 195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 99999999999999999999999999996321 234455545888999999999999999999999
Q ss_pred eEEEEECCCCe--------EEEE--eecCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEE
Q psy3053 779 MLNVYDLTTGM--------QVCN--KVFEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 779 ~I~iwDl~tg~--------~i~~--~~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l 834 (917)
.|++|+...+. .... ..|...|.+++|+|++ .+++|+.||.|++|++.+++.....
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 99999986542 1111 2466789999999864 6888999999999999887765443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=284.96 Aligned_cols=245 Identities=18% Similarity=0.203 Sum_probs=207.5
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCC
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAG 735 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG 735 (917)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.... ........+|...|.+++|+++ +++|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 4567899999999999999999999999999999986431 1234456789999999999864 89999999999
Q ss_pred eEEEEECCCCe--eeEEecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCe---EEEEeecCCceEEEEEeCC
Q psy3053 736 ELIIWSLENHL--MTQQLSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGM---QVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 736 ~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~---~i~~~~~~~~i~~l~~s~~ 808 (917)
+|++||+.+++ .+..+. .|...|.+++|+|+ |..|++++.|+.|++||++++. ......+...+.+++|+|+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99999998874 444554 78899999999997 8999999999999999998763 2233456778999999985
Q ss_pred --------------CEEEEEeCCCeEEEEECCCCE----EEEEEecCCCceEEEee--c---CCEEEEEeCCCeEEEEEC
Q psy3053 809 --------------EKVILGGALGMVYLVDLIQVQ----LLKQVRAHKDAVLSLHF--D---NCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 809 --------------~~lv~gs~dG~I~vwdl~~~~----~i~~l~~h~~~V~sis~--d---g~~Lasgs~DG~I~Iwdl 865 (917)
..+++|+.||.|++||+.+++ ....+.+|...|.++++ + +.+|++|+.||+|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 379999999999999998765 66788999999999954 5 378999999999999999
Q ss_pred cCCe---EEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 866 ECGR---IVTEL--AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 866 ~tg~---~l~~l--~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+++. ....+ .+|...|.+++|+|+|++||+++.||.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 7643 22333 5688999999999999999999999999999986
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-30 Score=280.22 Aligned_cols=256 Identities=18% Similarity=0.285 Sum_probs=219.9
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
.....+.+|...|.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+.++ .......+|...|.+++|+|+++.+++|+.||.|++||+++++.+..+. .|...|.+++|+|+++.++
T Consensus 94 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 94 VSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEE
T ss_pred CCCC-------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCCEEE
Confidence 9876 3445566899999999999999999999999999999999999888887 7889999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT 850 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~ 850 (917)
+++.||.|++||+++++.+.... ..+...+.++ ++++++
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~ 206 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLI---------------------------------------DDDNPPVSFVKFSPNGKY 206 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC---------------------------------------CSSCCCEEEEEECTTSSE
T ss_pred EEeCCCcEEEEECCCCceeeEEe---------------------------------------ccCCCceEEEEECCCCCE
Confidence 99999999999998776543211 1233344444 668899
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEE---EEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAIS---CVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~---slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+++++.||.|++||+.+++.+..+.+|...+. .....+++.+|++|+.||.|++||++.. .+..+
T Consensus 207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 99999999999999999999999998876533 2333468899999999999999999854 44443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-30 Score=289.00 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=218.0
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEecc--CCceeeeeeccccceEEEEEeCC--CCEEEEEecccEEE
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLK--TGRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVV 647 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~ 647 (917)
++..+.+|.+.|++++|+|+|++|++|+.||.|++|++. +++....+..|...|.+++|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 457789999999999999999999999999999999998 56677888899999999999987 89999999999999
Q ss_pred EEEeccCe--eeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 648 IYDVECGR--IVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 648 Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
+||+.+++ .+..+.+|...|++++|+|+ +.+|++++.||.|++||+.... .........|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----TTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-----CCCEEEEECCTTCEEEEEECC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-----ceeeEEecCCCCceEEEEEcC
Confidence 99999997 77888899999999999999 9999999999999999997752 123334567899999999999
Q ss_pred -------------CCCEEEEEECCCeEEEEECCCCe----eeEEecCCCCCCeEEEEEecC---CCEEEEEeCCCeEEEE
Q psy3053 724 -------------DNNQLAVGTEAGELIIWSLENHL----MTQQLSDDINASVNGVLFSED---GCRVLSCGNNCMLNVY 783 (917)
Q Consensus 724 -------------dg~~Lasgs~dG~I~iwDl~~~~----~~~~l~~~h~~~V~~v~fspd---g~~L~s~s~Dg~I~iw 783 (917)
++..+++|+.||.|++||++++. ....+. .|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 69999999999999999998764 334454 78999999999999 8999999999999999
Q ss_pred ECCCCe---EEEE---eecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCE
Q psy3053 784 DLTTGM---QVCN---KVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 784 Dl~tg~---~i~~---~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~ 829 (917)
|+.++. .... ..+...+.+++|++++. +++++.||.|++|++....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 998863 1222 22667899999998765 7788999999999997543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-30 Score=292.17 Aligned_cols=243 Identities=17% Similarity=0.233 Sum_probs=201.4
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||+.+++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred ccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 661 AGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 661 ~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
. +...+.+++|+| ++++|++|+.||+|++||+.++..............+|...|.+++|+|+++.+++|+.||.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 6 567899999999 89999999999999999998762111100011112578899999999999999999999999999
Q ss_pred EECCCCe------------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEe
Q psy3053 740 WSLENHL------------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWA 806 (917)
Q Consensus 740 wDl~~~~------------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s 806 (917)
||+++.. ....+. +|...|.+++|+|++.+|++++.|+.|++||..+++.+..+. |...+.+++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9997642 334444 788999999999999999999999999999999998876654 66778898887
Q ss_pred CC-------CEEEEEeCCCeEEEEEC
Q psy3053 807 GE-------EKVILGGALGMVYLVDL 825 (917)
Q Consensus 807 ~~-------~~lv~gs~dG~I~vwdl 825 (917)
+. ..+++|+.||.|++|++
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCcCcCCCCCEEEEECCCCcEEECcc
Confidence 53 24555556666666654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=290.67 Aligned_cols=248 Identities=16% Similarity=0.183 Sum_probs=204.0
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iw 649 (917)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998775 4567889999999999986 48999999999999999
Q ss_pred EeccC--eeeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-
Q psy3053 650 DVECG--RIVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD- 724 (917)
Q Consensus 650 dl~tg--~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 724 (917)
|+.++ +....+.+|.+.|++++|+|+ +.+|++|+.|++|++||+..... .........|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ----WEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC----EEECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC----cceeeeeccccCCcceEEEcccc
Confidence 99987 456778899999999999997 78999999999999999876410 0011233568889999999997
Q ss_pred ----------------CCEEEEEECCCeEEEEECCCC---eeeEEecCCCCCCeEEEEEecCC----CEEEEEeCCCeEE
Q psy3053 725 ----------------NNQLAVGTEAGELIIWSLENH---LMTQQLSDDINASVNGVLFSEDG----CRVLSCGNNCMLN 781 (917)
Q Consensus 725 ----------------g~~Lasgs~dG~I~iwDl~~~---~~~~~l~~~h~~~V~~v~fspdg----~~L~s~s~Dg~I~ 781 (917)
+.+|++|+.||.|++||++.. +....+. +|...|.+++|+|++ ..|++++.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 478999999999999999765 3555565 899999999999986 8899999999999
Q ss_pred EEECCCC---e--EEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 782 VYDLTTG---M--QVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 782 iwDl~tg---~--~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
+||+.+. . ......+...+.+++|+|++ .+++++.||.|++|+..
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9998762 1 11223467889999999876 47789999999999975
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=288.66 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=205.0
Q ss_pred eeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecC--CCCEEEEEECCCeEEEEe
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDE--KRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWd 692 (917)
.+.+|...|.+++|+|++++||+|+.|++|++||+.+++ .+..+.+|.+.|++++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 345799999999999999999999999999999999875 4678899999999999986 489999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCCeEEEEECCCCeee--EEecCCCCCCeEEEEEecCC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENHLMT--QQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG~I~iwDl~~~~~~--~~l~~~h~~~V~~v~fspdg 768 (917)
+.++. ........+|...|.+++|+|+ +.++++|+.||.|++||++.+... ......|...|.+++|+|++
T Consensus 88 ~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 87641 1223345679999999999998 789999999999999999876322 22233788899999999975
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC---EEEEEEecCCCceEEEe
Q psy3053 769 CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---QLLKQVRAHKDAVLSLH 845 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---~~i~~l~~h~~~V~sis 845 (917)
.. +.+ .+...+.. ......+++|+.|+.|++||+... +.+..+.+|...|.++.
T Consensus 163 ~~-------~~~--~~~~~~~~--------------~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 163 VP-------GSL--IDHPSGQK--------------PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp CC---------------CCSCC--------------CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred CC-------ccc--cccccccC--------------ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 21 000 00001100 001236888888999999998754 56777889999999994
Q ss_pred --ecC----CEEEEEeCCCeEEEEECcCC---e-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 846 --FDN----CTMLVGCWDSCVVIYDVECG---R-IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 846 --~dg----~~Lasgs~DG~I~Iwdl~tg---~-~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
|++ .+|++|+.||+|++|++.+. . ....+.+|.+.|.+++|+|++++||+|+.||+|++|+..
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 454 78999999999999998762 1 223456788999999999999999999999999999976
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=281.69 Aligned_cols=286 Identities=13% Similarity=0.200 Sum_probs=236.2
Q ss_pred ccccceeeeccCCcceEEEEEeCC---CcEEEEEecCCceEEEeccC-Ccee-eeeeccccceEEEEEeCCCCEEEEEec
Q psy3053 568 SILEPLHFCHSHKEAITAVAICGE---GISVASVGRDAMLKIHSLKT-GRQE-RSAVLSSMTLSSLCILPDNCTMLVGCW 642 (917)
Q Consensus 568 ~~l~~~~~l~~H~~~Vtsv~fSpd---g~~Lasgs~Dg~I~IWd~~t-~~~~-~~~~~~~~~V~sl~~spd~~~Lasgs~ 642 (917)
...+++..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 445677888999999999999999 69999999999999999987 5554 678889999999999999999999999
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEe--cCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~--spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
||.|++||+.+++.+. +.+|...|++++| ++++++|++++.||.|++||+.++. .. ........+.++.
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~-~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-------PM-MVLQLPERCYCAD 177 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-------CS-EEEECSSCEEEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-------EE-EEEecCCCceEEE
Confidence 9999999999998776 5679999999999 8999999999999999999998762 22 2223344666666
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeeeE-EecCCCCCCeEEEEEecCCCE----EEEEeCCCeEEEEECCCCe---EEE
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLENHLMTQ-QLSDDINASVNGVLFSEDGCR----VLSCGNNCMLNVYDLTTGM---QVC 792 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~~~~~~~-~l~~~h~~~V~~v~fspdg~~----L~s~s~Dg~I~iwDl~tg~---~i~ 792 (917)
+. +..+++++.++.+.+|+++...... .....+...+.++++.+++.. +++++.||.|++||+.... ...
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 66 4588999999999999998765433 333345667778888776655 9999999999999998762 223
Q ss_pred EeecCC-------------ceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC
Q psy3053 793 NKVFEE-------------KLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW 856 (917)
Q Consensus 793 ~~~~~~-------------~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~ 856 (917)
...... .+.+++|++++ .+++|+.||.|++||+.+++.+..+.+|...|.++ ++++++|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 322221 69999999876 68899999999999999999999999999999998 568999999999
Q ss_pred CCeEEEEE
Q psy3053 857 DSCVVIYD 864 (917)
Q Consensus 857 DG~I~Iwd 864 (917)
|+..+.|+
T Consensus 336 d~~~~~~~ 343 (368)
T 3mmy_A 336 YDWSKGHE 343 (368)
T ss_dssp CCSTTCGG
T ss_pred cccccccc
Confidence 87554444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=282.19 Aligned_cols=318 Identities=12% Similarity=0.069 Sum_probs=257.4
Q ss_pred CcceEEEE---EeCCCcEEEEE--------------ecCCceEEEeccC--C--ceeeeeeccccceEEEEEeCCCCEEE
Q psy3053 580 KEAITAVA---ICGEGISVASV--------------GRDAMLKIHSLKT--G--RQERSAVLSSMTLSSLCILPDNCTML 638 (917)
Q Consensus 580 ~~~Vtsv~---fSpdg~~Lasg--------------s~Dg~I~IWd~~t--~--~~~~~~~~~~~~V~sl~~spd~~~La 638 (917)
...+..++ |+|++..++.. +.++.+.+|.++. + +.+..+..+. .+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence 34556666 77766655433 3344345555433 4 3444444443 456899999888888
Q ss_pred EEecccEEEEEEeccCeeeE-----EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 639 VGCWDSCVVIYDVECGRIVT-----ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~i~-----~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
+++.++.|++||+.+++... .+.+|.+.|.+++|++++..+++++.|+.|++||+.++ ........|.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------~~~~~~~~~~ 211 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-------AYKATVDLTG 211 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-------CEEEEEECSS
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-------eEEEEEcCCC
Confidence 88889999999999998877 45579999999999999999999999999999999765 2333444678
Q ss_pred CceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--------CCCeEEEEE
Q psy3053 714 NRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--------NNCMLNVYD 784 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--------~Dg~I~iwD 784 (917)
..+.+++|+|+++.+++++ .+|.|.+||+++++.+..+. ....+.+++|+|+|+.+++++ .|+.|++||
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 8999999999999885554 79999999999999888776 345699999999999999888 588999999
Q ss_pred CCCCeEEEEeecCCceEEEEEeCCC-E-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC----
Q psy3053 785 LTTGMQVCNKVFEEKLLCLSWAGEE-K-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW---- 856 (917)
Q Consensus 785 l~tg~~i~~~~~~~~i~~l~~s~~~-~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~---- 856 (917)
+.+++......+...+.+++|++++ . +++++.++.|++||+.+++.+..+. +...+.++ +++++.+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 290 MDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp TTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCC
T ss_pred CCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCc
Confidence 9999988887777789999999877 3 4566889999999999999888876 56667777 668998888876
Q ss_pred -----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCc
Q psy3053 857 -----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL-VGAPKLYATEF 909 (917)
Q Consensus 857 -----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~-DG~V~IWdl~~ 909 (917)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. ||.|++|++++
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988876 457999999999999998875 99999999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=284.12 Aligned_cols=255 Identities=14% Similarity=0.195 Sum_probs=209.4
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec--cCeeeEEeccCCCceeEEEecCC--CCEEEEEECCCe
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE--CGRIVTELAGHEDAISCVAWDEK--RKRLISGSWDCT 687 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~--tg~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~Dgt 687 (917)
|+.+..+.+|...|.+++|+|++++|++|+.||.|++|++. +++.+..+.+|.+.|++++|+++ +++|++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34567788999999999999999999999999999999998 66778889999999999999977 899999999999
Q ss_pred EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCCeEEEEECCCCe--eeEEecCCCCCCeEEEE
Q psy3053 688 VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENHL--MTQQLSDDINASVNGVL 763 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG~I~iwDl~~~~--~~~~l~~~h~~~V~~v~ 763 (917)
|++||+.++. .........|...|.+++|+|+ +..+++|+.||.|++||+.++. ....+. .|...|.+++
T Consensus 81 v~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~ 154 (379)
T 3jrp_A 81 VLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSAS 154 (379)
T ss_dssp EEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEE
T ss_pred EEEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEE
Confidence 9999987651 1134445678999999999999 9999999999999999998873 233343 7889999999
Q ss_pred Eec-------------CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 764 FSE-------------DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 764 fsp-------------dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
|+| ++..+++++.||.|++||++++... ...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------------~~~ 198 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------------YVL 198 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------------EEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------------eee
Confidence 999 5777777777777777776543211 123
Q ss_pred EEEEecCCCceEEE--eec---CCEEEEEeCCCeEEEEECcCCe---EEEE--ecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 831 LKQVRAHKDAVLSL--HFD---NCTMLVGCWDSCVVIYDVECGR---IVTE--LAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 831 i~~l~~h~~~V~si--s~d---g~~Lasgs~DG~I~Iwdl~tg~---~l~~--l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
...+.+|...|.++ +|+ +++|++++.||.|++||+.++. .... ...|...|++++|+|+|++|++++.||
T Consensus 199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 45567788888888 456 7899999999999999998864 2223 334889999999999999999999999
Q ss_pred cEEEEecC
Q psy3053 901 APKLYATE 908 (917)
Q Consensus 901 ~V~IWdl~ 908 (917)
.|++|+++
T Consensus 279 ~i~iw~~~ 286 (379)
T 3jrp_A 279 KVTLWKEN 286 (379)
T ss_dssp SEEEEEEE
T ss_pred cEEEEeCC
Confidence 99999997
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=309.83 Aligned_cols=294 Identities=8% Similarity=0.001 Sum_probs=222.4
Q ss_pred ccccCCcccc---ceeeeccCCcceEEEEEeCC------CcEEEEEecCCceEEEeccCCce-----------eeeeecc
Q psy3053 562 NSWCDKSILE---PLHFCHSHKEAITAVAICGE------GISVASVGRDAMLKIHSLKTGRQ-----------ERSAVLS 621 (917)
Q Consensus 562 ~~w~~~~~l~---~~~~l~~H~~~Vtsv~fSpd------g~~Lasgs~Dg~I~IWd~~t~~~-----------~~~~~~~ 621 (917)
.+|+...... ....+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+.+|
T Consensus 186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h 265 (524)
T 2j04_B 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265 (524)
T ss_dssp EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT
T ss_pred EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC
Confidence 5787543211 12446788999999999997 57999999999999999987642 2356678
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-eeEEeccCCCceeEE--EecCCC-CEEEEEECCCeEEEEeCCCCC
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-IVTELAGHEDAISCV--AWDEKR-KRLISGSWDCTVRVWNTGASW 697 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-~i~~l~~H~~~Vt~l--~~spd~-~~L~Sgs~DgtI~vWdl~~~~ 697 (917)
...|.+++|++++ .|++|+.||+|++||+.++. ....+.+|.+.|+++ +|++++ .+|+|||.|++|++||++++.
T Consensus 266 ~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 266 DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 8999999999864 89999999999999999874 456688999999999 578887 899999999999999987641
Q ss_pred CCccCCcceeeeccCC--CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 698 SHMKPSKSLVSQLDLD--NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~--~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
......+|. ..|.+++|+|++..+++++.|++|++||++++..+..+. +|.+.|.+++|+|+|+.|++|+
T Consensus 345 -------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 345 -------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp -------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEE
T ss_pred -------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEE
Confidence 122222333 358899999999999999999999999999998877777 7999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEe------ecCCceEEEEEeCCCEEEEEeCCCeEEEEECC-CCEEEEEEecCCCceEEEee--
Q psy3053 776 NNCMLNVYDLTTGMQVCNK------VFEEKLLCLSWAGEEKVILGGALGMVYLVDLI-QVQLLKQVRAHKDAVLSLHF-- 846 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~------~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~-~~~~i~~l~~h~~~V~sis~-- 846 (917)
.||+|++||+..+. .... .....+.++++++++..+....+ ..+|+.. ++..+..+.+|...|.++++
T Consensus 417 ~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 417 ADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEEECCC--CCCCC-------------CCCSCCCEEECC
T ss_pred CCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEEccCC--ceecccccCCcceeeecCCCceEEEEECCC
Confidence 99999999986541 1110 01124567888888765544332 2333332 46677888999999999954
Q ss_pred cC---CEEEEEeCCCeEEEEECcC
Q psy3053 847 DN---CTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 847 dg---~~Lasgs~DG~I~Iwdl~t 867 (917)
++ ..+|+|+.||.|+||+++-
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 53 4899999999999999863
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=291.90 Aligned_cols=284 Identities=13% Similarity=0.176 Sum_probs=229.6
Q ss_pred eEEEEEeCCCcEE-EEEecCCceEEEeccCC----ceeeeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEeccC--
Q psy3053 583 ITAVAICGEGISV-ASVGRDAMLKIHSLKTG----RQERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECG-- 654 (917)
Q Consensus 583 Vtsv~fSpdg~~L-asgs~Dg~I~IWd~~t~----~~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg-- 654 (917)
...++++|+...+ ++++.||.|++|++... .....+.+|...|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3457888887544 45788999999998654 23456778999999999999 8999999999999999999988
Q ss_pred -----eeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeee--ccCCCceEEEEEeCCCC
Q psy3053 655 -----RIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNN 726 (917)
Q Consensus 655 -----~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~ 726 (917)
+.+..+.+|.+.|++++|+|++ ++|++|+.||+|++||+.++ ...... ..|...|.+++|+|+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------AAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-------EEEEEECTTTCCSCEEEEEECTTSS
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-------CccEEEecCCCCCceEEEEECCCCC
Confidence 5678899999999999999998 69999999999999999876 233344 57899999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeEEecCCCCCC-eEEEEEecCCCEEEEE---eCCCeEEEEECCCCeE-EEEeecCCceE
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQQLSDDINAS-VNGVLFSEDGCRVLSC---GNNCMLNVYDLTTGMQ-VCNKVFEEKLL 801 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~-V~~v~fspdg~~L~s~---s~Dg~I~iwDl~tg~~-i~~~~~~~~i~ 801 (917)
.+++|+.||.|++||+++++.+..+...|.+. +.+++|+|++.+++++ +.|+.|++||++++.. ....
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------- 262 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------- 262 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-------
T ss_pred EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-------
Confidence 99999999999999999999998883366655 8999999999999998 7899999999876532 1000
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEE-EeCCCeEEEEECcCCeE-EEEecC-
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLV-GCWDSCVVIYDVECGRI-VTELAG- 876 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Las-gs~DG~I~Iwdl~tg~~-l~~l~~- 876 (917)
...|...+.++ +++++.+++ |+.||.|++||+.+++. +..+..
T Consensus 263 --------------------------------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 263 --------------------------------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp --------------------------------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred --------------------------------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 01234445555 667888764 55799999999988873 444433
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 877 -HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 877 -h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
|..+|.+++|+|++.++++ .++.+++|++....+..
T Consensus 311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~ 347 (402)
T 2aq5_A 311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEP 347 (402)
T ss_dssp CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEE
T ss_pred ccCCcccceEEeccccccee--cceeEEEEEcCCCcEEE
Confidence 5689999999999998875 56799999998765443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=301.67 Aligned_cols=291 Identities=12% Similarity=0.077 Sum_probs=228.0
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
+.-...|.+++|||||+++||++.|++|+ |...+ +.+.+|...|.+++|+|+| .++.+.+|+ ++.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~ 76 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQ 76 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEe---CCC
Confidence 34457899999999999999999999999 64444 4557899999999999998 455555554 433
Q ss_pred eEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC-----ceEEEEEeCCCCEEEE
Q psy3053 657 VTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN-----RIKCLAISKDNNQLAV 730 (917)
Q Consensus 657 i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~Las 730 (917)
...+. +|.+.|.+++|+|+|+.||+++.||+|++||..+ ......|.. .+.+++|||+|++|++
T Consensus 77 ~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 77 NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLDSKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECCCSSCSTTTCEEEEEECSSSSCEEE
T ss_pred ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeeccCCCccccccEEEEEEcCCCCEEEE
Confidence 23333 5688999999999999999999999999999532 222222443 5999999999999999
Q ss_pred EECCCeEEEEECCCCee-------eEEec---CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE---EEEe--e
Q psy3053 731 GTEAGELIIWSLENHLM-------TQQLS---DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ---VCNK--V 795 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~-------~~~l~---~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~---i~~~--~ 795 (917)
|+.||+|++||+.++.. +..+. .+|...|.+++|+|+| +++++.|+++++||+.++.. ...+ .
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 99999999999998753 45552 3678899999999999 88899999999999988763 2333 3
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE----eecCCEEEEEeCCCeEEEEECcCCe--
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL----HFDNCTMLVGCWDSCVVIYDVECGR-- 869 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si----s~dg~~Lasgs~DG~I~Iwdl~tg~-- 869 (917)
+...|.+++|+ ++.+++++ +|.|++||+.+++......+|.+.+..+ ++++..++++++||+ ++|....-.
T Consensus 225 h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~s 301 (588)
T 2j04_A 225 SRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVT 301 (588)
T ss_dssp CSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEE
T ss_pred ccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEEC
Confidence 55789999999 45777776 6999999999988855444899988866 557888999999999 999875211
Q ss_pred ---------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 870 ---------------------IVTELAGHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 870 ---------------------~l~~l~~h~~~V~slafSpdg~~LaSgs~ 898 (917)
.+..+. +...|.+++|||||+.+|+++.
T Consensus 302 pd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 302 ADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred CCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 011111 2345999999999999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=282.74 Aligned_cols=258 Identities=14% Similarity=0.115 Sum_probs=223.1
Q ss_pred ccccCCccc-----cceeeeccCCcceEEEEEeCC----C---cEEEEEecCCceEEEeccCCce-----eeeeecc---
Q psy3053 562 NSWCDKSIL-----EPLHFCHSHKEAITAVAICGE----G---ISVASVGRDAMLKIHSLKTGRQ-----ERSAVLS--- 621 (917)
Q Consensus 562 ~~w~~~~~l-----~~~~~l~~H~~~Vtsv~fSpd----g---~~Lasgs~Dg~I~IWd~~t~~~-----~~~~~~~--- 621 (917)
.+|+..... ++...+.+|...|++++|+|+ | ++|++++.||.|++|++.+++. ...+..|
T Consensus 39 ~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 118 (397)
T 1sq9_A 39 KVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD 118 (397)
T ss_dssp EEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT
T ss_pred EEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc
Confidence 577765432 367888899999999999999 9 9999999999999999999887 7778888
Q ss_pred --ccceEEEEEe----CCCCE-EEEEecccEEEEEEecc------CeeeE-----Ee-------ccCCCceeEEEecCCC
Q psy3053 622 --SMTLSSLCIL----PDNCT-MLVGCWDSCVVIYDVEC------GRIVT-----EL-------AGHEDAISCVAWDEKR 676 (917)
Q Consensus 622 --~~~V~sl~~s----pd~~~-Lasgs~Dg~I~Iwdl~t------g~~i~-----~l-------~~H~~~Vt~l~~spd~ 676 (917)
...|.+++|+ |+++. +++|+.||.|++||+.+ ++.+. .+ ..|...|++++|+|++
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 119 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 5899999999 99999 99999999999999998 66665 66 4489999999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc---C---CCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCee
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD---L---DNRIKCLAISKDNNQLAVGTEA---GELIIWSLENHLM 747 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~---h---~~~V~~l~~spdg~~Lasgs~d---G~I~iwDl~~~~~ 747 (917)
.+++|+.||.|++||+.++ ........ | ...|.+++|+|+++++++|+.| |.|++||+++++.
T Consensus 199 -~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 199 -LIATGFNNGTVQISELSTL-------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp -EEEEECTTSEEEEEETTTT-------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred -eEEEEeCCCcEEEEECCCC-------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 9999999999999999765 23333445 7 8999999999999999999999 9999999999999
Q ss_pred eEEecCC-------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-------c-----------
Q psy3053 748 TQQLSDD-------------INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-------F----------- 796 (917)
Q Consensus 748 ~~~l~~~-------------h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-------~----------- 796 (917)
+..+. . |...|.+++|+|++++|++++.||.|++||+.+++.+..+. +
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 271 IGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred cceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 88887 5 88999999999999999999999999999999999888776 3
Q ss_pred ----CCceEEEEEeCCC-----------EEEEEeCCCeEEEEECCCC
Q psy3053 797 ----EEKLLCLSWAGEE-----------KVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 797 ----~~~i~~l~~s~~~-----------~lv~gs~dG~I~vwdl~~~ 828 (917)
...+.+++|++++ .+++|+.||.|++|++.++
T Consensus 350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 6789999999884 6778888888888887665
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=282.76 Aligned_cols=304 Identities=9% Similarity=0.040 Sum_probs=235.4
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeecc-----------------------------------
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLS----------------------------------- 621 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~----------------------------------- 621 (917)
..++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966655 68899999999998 55444322
Q ss_pred -------------------ccceEEEEEeCCCCEE-EEEecccEEEEEEec--cCeeeEEec--cCCCceeEEEecCCCC
Q psy3053 622 -------------------SMTLSSLCILPDNCTM-LVGCWDSCVVIYDVE--CGRIVTELA--GHEDAISCVAWDEKRK 677 (917)
Q Consensus 622 -------------------~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~--tg~~i~~l~--~H~~~Vt~l~~spd~~ 677 (917)
...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|++++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 2269999999999996 889999999999999 888888876 5778999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
+|++|+.||.|.+|++.+...... ......+|...|.+++|+|+ +++|++|+.||.|++||+.+++.+..+..+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF---TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC---CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEEeCCCcEEEEecCCcccccc---cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 999999999999999977621110 11234578899999999999 999999999999999999999888875558
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC---CCEEEEEeCCCeEEEEECCCCEEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG---EEKVILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~---~~~lv~gs~dG~I~vwdl~~~~~i 831 (917)
|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.....+..+.+.. ...+. .
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 300 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ------------------N 300 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC------------------------
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc------------------c
Confidence 99999999999 99999999999999999999998776654322111111100 00000 0
Q ss_pred EEEecCCCceEEE--eecCCEEEEEe-CCCeEEEEEC--cCC---eEEEEecCCCCCEEEEEEcCCCCEEEEE-eC----
Q psy3053 832 KQVRAHKDAVLSL--HFDNCTMLVGC-WDSCVVIYDV--ECG---RIVTELAGHEDAISCVAWDEKRKRLISG-NL---- 898 (917)
Q Consensus 832 ~~l~~h~~~V~si--s~dg~~Lasgs-~DG~I~Iwdl--~tg---~~l~~l~~h~~~V~slafSpdg~~LaSg-s~---- 898 (917)
.........|.++ +++++++++++ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|++ .++++ +.
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~ 378 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSG 378 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCS
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCC
Confidence 0001233456666 56899999998 8999999999 666 778888888 889999999964 44444 32
Q ss_pred --CCcEEEEecC
Q psy3053 899 --VGAPKLYATE 908 (917)
Q Consensus 899 --DG~V~IWdl~ 908 (917)
+..|.+|.++
T Consensus 379 ~~~~~i~v~~~~ 390 (450)
T 2vdu_B 379 VQKNFAKFIEYN 390 (450)
T ss_dssp SCCCSEEEEEEE
T ss_pred CCCcceEEEEEE
Confidence 5568999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=290.02 Aligned_cols=302 Identities=9% Similarity=0.121 Sum_probs=240.5
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeC-CCCEEEEEecccEEEEEEecc---Ce---eeE
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVEC---GR---IVT 658 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~t---g~---~i~ 658 (917)
.|+|++..+++++ .|+ .+++.+..+ .+|...|.+++|+| ++++|++|+.||+|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678887777665 377 557777778 78899999999999 999999999999999999987 43 222
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC---CCCCCccCC-cce--eeecc--CCCceEEEE--EeCCCCEE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG---ASWSHMKPS-KSL--VSQLD--LDNRIKCLA--ISKDNNQL 728 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~---~~~~~~~~~-~~~--~~~~~--h~~~V~~l~--~spdg~~L 728 (917)
.+ +|.+.|++++|+|++++|++|+.||+|++||+. .+....... ... ..... +...+.++. +++++..+
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 599999999999999999999999999999985 221000000 000 01111 567788887 56889999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe--ecCCceEEEEE
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDD-INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK--VFEEKLLCLSW 805 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~-h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~--~~~~~i~~l~~ 805 (917)
++|+.||.|++||+++++.+..+... |...|.+++|+|++.+|++|+.||.|++||+++++.+... .+...+.++++
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 99999999999999999999988832 7899999999999999999999999999999999988876 45567999977
Q ss_pred eC----CC-EEEEEeCCCeEEEEECCCCEEEEEEecCC--------------------------CceEEEee-cCCEEEE
Q psy3053 806 AG----EE-KVILGGALGMVYLVDLIQVQLLKQVRAHK--------------------------DAVLSLHF-DNCTMLV 853 (917)
Q Consensus 806 s~----~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~--------------------------~~V~sis~-dg~~Las 853 (917)
++ ++ .+++|+.||.|++||+.+++.+..+.+|. ..|.++++ ++++|++
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s 345 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLT 345 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEe
Confidence 64 44 57888999999999999999988887553 34555533 5678999
Q ss_pred EeCCCeEEEEECcCCeEEEEecCCC---CCEEEEEEcCCCCEEEEE
Q psy3053 854 GCWDSCVVIYDVECGRIVTELAGHE---DAISCVAWDEKRKRLISG 896 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~l~~h~---~~V~slafSpdg~~LaSg 896 (917)
|+.||.|++||+.+++....+.+|. ..+....+++...+++..
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 9999999999999999888888764 345666777766655554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-29 Score=276.44 Aligned_cols=262 Identities=15% Similarity=0.168 Sum_probs=222.6
Q ss_pred eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
+..|..+|.+++|+|+++++++|+.||.|++||+.+++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34578899999999999999999999999999999997 8889999999999999999999999999999999999866
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee---eEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM---TQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~---~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+. .........|...|.+++|+|+++.+++|+.||.|++||++.+.. ...+...|...|.+++|+|+++.++
T Consensus 84 ~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 84 RT-----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp TE-----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred Ce-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 51 112233457889999999999999999999999999999988763 4445447889999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEE--ECCCCEEEEEEecCCCceEEE--eecC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLV--DLIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vw--dl~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++.||.|++||+......... . ...| ....++.+..+.+|...|.++ ++++
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~-------------~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERP-------------A-----------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCC-------------C-----------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred EEcCCCCEEEEEcccccccccc-------------c-----------ccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 9999999999998643210000 0 0001 123566777788899999988 5588
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|++| .||.|++|++..
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999999999999999999999999999999988887 999999999976
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=270.88 Aligned_cols=273 Identities=13% Similarity=0.137 Sum_probs=231.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+... .+.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+++.+++++
T Consensus 57 ~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 57 SVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp EEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEec
Confidence 5787544 46778899999999999999999999999999999999999999888877 778999999999999999999
Q ss_pred cc-----cEEEEEEeccCe-----------eeEEeccCCC--ceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC
Q psy3053 642 WD-----SCVVIYDVECGR-----------IVTELAGHED--AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 642 ~D-----g~I~Iwdl~tg~-----------~i~~l~~H~~--~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
.+ |.|++||+..+. ....+..|.+ .+.+++|+|+++.|++++.||.|++||+.+. .
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~ 208 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN------Y 208 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT------T
T ss_pred CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC------c
Confidence 99 999999998763 3445556666 9999999999999999999999999999763 1
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
........|...|.+++|+|+++++++++.||.|++||+++++....+. +...+.+++|+|+++.+++++.++...+|
T Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 209 EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 2344556788999999999999999999999999999999999888886 67899999999999999999999877776
Q ss_pred ECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEE
Q psy3053 784 DLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 784 Dl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~ 861 (917)
..... .....+++||..+++.+..+.+|...|.++ ++++++|++|+.||.|+
T Consensus 287 ~~~~~--------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 287 TTSAN--------------------------EGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp ----------------------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecC--------------------------CCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 54321 223478999999999999999999999998 55899999999999999
Q ss_pred EEECcCCeE
Q psy3053 862 IYDVECGRI 870 (917)
Q Consensus 862 Iwdl~tg~~ 870 (917)
+|+++++..
T Consensus 341 iw~~~~~~~ 349 (369)
T 3zwl_B 341 LHHFEKSYF 349 (369)
T ss_dssp EEEECHHHH
T ss_pred EEECccccc
Confidence 999976543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-27 Score=267.36 Aligned_cols=304 Identities=13% Similarity=0.137 Sum_probs=248.3
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeEEeccCCCceeEEE
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~ 671 (917)
..+++++.|+.|++||+.+++....+..+. .+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467888899999999999999888887665 47999999999977 667789999999999999998887665 899999
Q ss_pred ecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE-EEEECCCeEEEEECCCCeeeE
Q psy3053 672 WDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL-AVGTEAGELIIWSLENHLMTQ 749 (917)
Q Consensus 672 ~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L-asgs~dG~I~iwDl~~~~~~~ 749 (917)
|+|++++|+.+ +.|+.|++||+.++ .......+...+.+++|+|+++.+ ++++.++.|++||+.+++...
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSN--------TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTT--------EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCC--------eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999988654 46799999999876 233334456678999999999977 677889999999999999888
Q ss_pred EecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEe---CCCeEEEEE
Q psy3053 750 QLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGG---ALGMVYLVD 824 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs---~dG~I~vwd 824 (917)
.+. ....+.+++|+|+|+.+ ++++.++.|++||+++++......+...+.++++++++ .+++++ .++.|++||
T Consensus 153 ~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 153 TVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 876 34567999999999988 56678899999999999998888888889999999876 466666 689999999
Q ss_pred CCCCEEEEEEecCCCceEEE--eecCCEE-EEEeCCCeEEEEECcCCeEEEEecCCCCCEE---EEEEcC----------
Q psy3053 825 LIQVQLLKQVRAHKDAVLSL--HFDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAIS---CVAWDE---------- 888 (917)
Q Consensus 825 l~~~~~i~~l~~h~~~V~si--s~dg~~L-asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~---slafSp---------- 888 (917)
+.+++.+..+..|.. +.++ +++++.+ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 231 TGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 999999998887665 4555 6789877 6678899999999999999998877655421 122222
Q ss_pred --CC----------CEEEEEeCCCcEEEEecCc
Q psy3053 889 --KR----------KRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 889 --dg----------~~LaSgs~DG~V~IWdl~~ 909 (917)
+. ..+...+.|..+++|++..
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 11 2455667789999999964
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=278.80 Aligned_cols=277 Identities=19% Similarity=0.242 Sum_probs=217.1
Q ss_pred ccccccccCCcccccee--eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCC
Q psy3053 558 SDVSNSWCDKSILEPLH--FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 558 ~d~~~~w~~~~~l~~~~--~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
.....+|+..++ +... .+.+|.+.|++|+|+|+|++|++|+.||+|++||+.+++.++.+.+|...+.++++ ++.
T Consensus 124 d~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~ 200 (420)
T 4gga_A 124 DNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY 200 (420)
T ss_dssp TTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETT
T ss_pred CCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCC
Confidence 334478987664 3333 44678899999999999999999999999999999999999999999999988776 567
Q ss_pred EEEEEecccEEEEEEeccC-eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.+++|+.|+.+++||.... ..+..+.+|...+.++.++|+++++++++.|+.+++|+...+... .........|..
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~---~~~~~~~~~~~~ 277 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTFTQHQG 277 (420)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC---SCCSEEECCCSS
T ss_pred EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc---ceeeeeecccCC
Confidence 9999999999999998864 556788999999999999999999999999999999999876321 123345667889
Q ss_pred ceEEEEEeCCC-CEEEEE--ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCe
Q psy3053 715 RIKCLAISKDN-NQLAVG--TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGM 789 (917)
Q Consensus 715 ~V~~l~~spdg-~~Lasg--s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~ 789 (917)
.|.+++|+|.+ ..++++ +.||.|++||+.+++....+. +...+.++.|+|+++.+++++ .|+.|++||+
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~---- 351 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKY---- 351 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEET----
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEEC----
Confidence 99999999976 455543 579999999999999988886 456899999999998887764 4555555554
Q ss_pred EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcC
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~t 867 (917)
.+++++.++.+|.+.|+++ +|+|++|++|+.||+|++||+..
T Consensus 352 ------------------------------------~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 352 ------------------------------------PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ------------------------------------TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ------------------------------------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 4455566677888888887 56888899999999999998876
Q ss_pred CeEEEEecCCCCCEE
Q psy3053 868 GRIVTELAGHEDAIS 882 (917)
Q Consensus 868 g~~l~~l~~h~~~V~ 882 (917)
..+......+...+.
T Consensus 396 ~~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 396 LDPARRREREKASAA 410 (420)
T ss_dssp SSCC-----------
T ss_pred CCccchhhhccCCcc
Confidence 665555554444433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=286.17 Aligned_cols=261 Identities=12% Similarity=0.140 Sum_probs=210.1
Q ss_pred eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC--eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG--RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg--~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
...+..+|.+++|+|++++|++|+.||.|++||+.++ +.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3445678999999999999999999999999999998 78888999999999999999999999999999999999987
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe---eeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL---MTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~---~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+. ..........|...|.+++|+|+++.+++|+.||.|++||+++++ ....+...|...|.+++|+|++++|+
T Consensus 87 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 87 DG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 62 112344566799999999999999999999999999999999887 36677644999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEE--CCCCEEEEEEecCCCceEEE--eecC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVD--LIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwd--l~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++.|+.|++||+.++........ ..|. +..++++..+ +|...|.++ +|++
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEA------------------------SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCS------------------------CSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred EEeCCCEEEEEEEEecccCCCccc------------------------cccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 999999999999875432111000 0010 1234455666 899999988 5689
Q ss_pred CEEEEEeCCCeEEEEECcCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~----l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++|++|+.||.|++||+.+++. +..+.+|..+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999999999887 77889999999999999999999998877665 66664
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=279.78 Aligned_cols=255 Identities=16% Similarity=0.211 Sum_probs=209.3
Q ss_pred eeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEecc----------CeeeEEeccCCCceeEEEecCCCC-EEEEEE
Q psy3053 616 RSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVEC----------GRIVTELAGHEDAISCVAWDEKRK-RLISGS 683 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~t----------g~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs 683 (917)
.....|...|.+++|+|+ +.++++|+.||.|++|++.+ .+....+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345568889999999997 68999999999999999987 577888899999999999999988 999999
Q ss_pred CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEEEECCCeEEEEECCCC---eeeEEecCCCCCCe
Q psy3053 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELIIWSLENH---LMTQQLSDDINASV 759 (917)
Q Consensus 684 ~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~---~~~~~l~~~h~~~V 759 (917)
.||+|++||+..+...............|...|.+++|+| ++..+++++.||.|++||++++ +....+. .|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCe
Confidence 9999999999874221111112334557899999999999 6789999999999999999987 4566665 788999
Q ss_pred EEEEEecCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 760 NGVLFSEDGC-RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 760 ~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
++++|+|++. .+++|+.||.|++||+++.. .++..+.+|.
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------------~~~~~~~~h~ 321 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------------LKLHSFESHK 321 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------------SCSEEEECCS
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------------CCeEEeecCC
Confidence 9999999887 68889999999999987531 1223444566
Q ss_pred CceEEE--eecC-CEEEEEeCCCeEEEEECcC--------------CeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCC
Q psy3053 839 DAVLSL--HFDN-CTMLVGCWDSCVVIYDVEC--------------GRIVTELAGHEDAISCVAWDEKRK-RLISGNLVG 900 (917)
Q Consensus 839 ~~V~si--s~dg-~~Lasgs~DG~I~Iwdl~t--------------g~~l~~l~~h~~~V~slafSpdg~-~LaSgs~DG 900 (917)
..|.++ +|++ .++++++.||.|++||+.. .+.+....+|...|++++|+|+++ +|++++.||
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 777776 3445 4688888888888888876 367888889999999999999999 999999999
Q ss_pred cEEEEecCcc
Q psy3053 901 APKLYATEFY 910 (917)
Q Consensus 901 ~V~IWdl~~~ 910 (917)
.|++|++...
T Consensus 402 ~i~iw~~~~~ 411 (430)
T 2xyi_A 402 IMQVWQMAEN 411 (430)
T ss_dssp EEEEEEECHH
T ss_pred CEEEeEcccc
Confidence 9999999753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-28 Score=295.10 Aligned_cols=248 Identities=16% Similarity=0.235 Sum_probs=215.7
Q ss_pred EEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 658 TELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
..+.+|.+.|++++|+++ +++|+|||.|++|++||+...... .........+|...|.+++|+|++++|++|+.||+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC--SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc--cccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 457799999999999986 479999999999999999764211 11223456789999999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe----ecCCceEEEEEeCCC---
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK----VFEEKLLCLSWAGEE--- 809 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~----~~~~~i~~l~~s~~~--- 809 (917)
|++||+.++.....+. +|...|.+++|+|+++.|++++.|++|++||.......... .+...+.|++|++++
T Consensus 454 v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999999999988887 89999999999999999999999999999998765444332 355679999999864
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS 887 (917)
.+++|+.||.|++||+.+++....+.+|.+.|.++ ++++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s 611 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFS 611 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEEC
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEc
Confidence 68999999999999999999999999999999998 66899999999999999999999999888764 5689999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCcc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|++.+|++++ |+.|++||++..
T Consensus 612 p~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 612 PNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTT
T ss_pred CCCcEEEEEc-CCCEEEEECCCC
Confidence 9998888776 456999999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=288.00 Aligned_cols=260 Identities=9% Similarity=0.089 Sum_probs=216.2
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+....
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----- 77 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----- 77 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-----
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc-----
Confidence 46789999999999999999999999 755554 447999999999999988 5666666654322
Q ss_pred CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC-----CeEEEEEecCCCEEEEEeC
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA-----SVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~-----~V~~v~fspdg~~L~s~s~ 776 (917)
. .....+...|.+++|+|+|..||+++.||.|++||..+ .+..+. |.. .|.+++|||||++|++|+.
T Consensus 78 ---~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 78 ---G-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp ---C-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred ---e-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 1 11224578899999999999999999999999999654 555544 333 6999999999999999999
Q ss_pred CCeEEEEECCCCe-------EEEEe-----ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE---EEEE-ecCCCc
Q psy3053 777 NCMLNVYDLTTGM-------QVCNK-----VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL---LKQV-RAHKDA 840 (917)
Q Consensus 777 Dg~I~iwDl~tg~-------~i~~~-----~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~---i~~l-~~h~~~ 840 (917)
||+|++||+.++. .+..+ .|...|.+++|+|++ +++++.|+.|++||+.++.. ..++ .+|...
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 9999999999874 23443 244689999999999 99999999999999988773 4566 478899
Q ss_pred eEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCc
Q psy3053 841 VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 841 V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slaf--Spdg~~LaSgs~DG~V~IWdl~~ 909 (917)
|.++++.|+.+|+++ +|+|++||+.+++......+|.+.|.+++| +|++..|++++.||+ ++|..+.
T Consensus 229 V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~ 297 (588)
T 2j04_A 229 ITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE 297 (588)
T ss_dssp CCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred EEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence 999977788999997 699999999988885555489999999999 999999999999999 9999873
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=273.30 Aligned_cols=261 Identities=13% Similarity=0.218 Sum_probs=216.4
Q ss_pred ccccCCccccceeeec-cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE
Q psy3053 562 NSWCDKSILEPLHFCH-SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~-~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg 640 (917)
.+|+..++. ....+. .|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+..|...|.+++| ++..+++|
T Consensus 116 ~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 192 (401)
T 4aez_A 116 YVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSG 192 (401)
T ss_dssp EEEETTTCC-EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred EEeeCCCCc-EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEE
Confidence 678866543 333443 48999999999999999999999999999999999999999999999999999 46799999
Q ss_pred ecccEEEEEEec-cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 641 CWDSCVVIYDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 641 s~Dg~I~Iwdl~-tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
+.||.|++||+. .+.....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++ ........|...|.++
T Consensus 193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~ 265 (401)
T 4aez_A 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-------IPKFTKTNHNAAVKAV 265 (401)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-------SEEEEECCCSSCCCEE
T ss_pred cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-------CccEEecCCcceEEEE
Confidence 999999999998 56778889999999999999999999999999999999999875 2344556789999999
Q ss_pred EEeCCC-CEEEEEE--CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeEEEEe
Q psy3053 720 AISKDN-NQLAVGT--EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 720 ~~spdg-~~Lasgs--~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~~i~~~ 794 (917)
+|+|++ .++++|+ .||.|++||+.+++.+..+. +...|.+++|+|+++.+++++ .||.|++||+.++......
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence 999977 4556654 79999999999999988886 667899999999999999954 8999999999987655432
Q ss_pred ---ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEE
Q psy3053 795 ---VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 795 ---~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l 834 (917)
.+...+.+++|++++ .+++++.||.|++|++.+++.+...
T Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 356678888888765 4667777888888888777665543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=310.52 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=214.2
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEecc--CCceeeeeeccccceEEEEEeCC--CCEEEEEecccEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLK--TGRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVVI 648 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~I 648 (917)
+..+.+|.++|++++|+|+|+++++|+.||+|++|++. +++....+.+|..+|.+++|+|+ ++.+++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 55677888899999999999988 999999999999999
Q ss_pred EEeccCe--eeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-
Q psy3053 649 YDVECGR--IVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK- 723 (917)
Q Consensus 649 wdl~tg~--~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 723 (917)
||+.+++ .+..+.+|.+.|++++|+|+ ++.+++|+.||+|++||+.++.. .......+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----CCCEEEECCSSCEEEEEECCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----cceeEeecCCCceEEEEecCc
Confidence 9999987 77888899999999999999 99999999999999999977521 22334567899999999999
Q ss_pred ------------CCCEEEEEECCCeEEEEECCCC----eeeEEecCCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEE
Q psy3053 724 ------------DNNQLAVGTEAGELIIWSLENH----LMTQQLSDDINASVNGVLFSED---GCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 724 ------------dg~~Lasgs~dG~I~iwDl~~~----~~~~~l~~~h~~~V~~v~fspd---g~~L~s~s~Dg~I~iwD 784 (917)
++..+++|+.||.|++||++++ .....+. +|...|.+++|+|+ +..+++++.||.|++||
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999999999999999877 4445555 78999999999999 89999999999999999
Q ss_pred CCCCeE------EEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCC
Q psy3053 785 LTTGMQ------VCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 785 l~tg~~------i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~ 828 (917)
+.++.. .....+...+.+++|+|++ .+++|+.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 988632 1223356779999999876 4778899999999999854
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=271.13 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=215.0
Q ss_pred ccccCCccccceeeec-----cCCcceEEEEEeCC----CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeC
Q psy3053 562 NSWCDKSILEPLHFCH-----SHKEAITAVAICGE----GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~-----~H~~~Vtsv~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp 632 (917)
.+|+.... +.+..+. .|.+.|++++|+|+ |.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|
T Consensus 47 ~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 47 TLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 125 (366)
T ss_dssp EEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS
T ss_pred EEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC
Confidence 57775533 2333333 36788999999999 67999999999999999999999999999999999999999
Q ss_pred -CCCEEEEEecccEEEEEEeccCeeeEEe---ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-------
Q psy3053 633 -DNCTMLVGCWDSCVVIYDVECGRIVTEL---AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------- 701 (917)
Q Consensus 633 -d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l---~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------- 701 (917)
++..+++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+.++.....
T Consensus 126 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 8999999999999999999999998888 78999999999999999999999999999999976521000
Q ss_pred --------------CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee--------------eEEecC
Q psy3053 702 --------------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM--------------TQQLSD 753 (917)
Q Consensus 702 --------------~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~--------------~~~l~~ 753 (917)
..........|...|.+++|+ ++++++++.||.|++||+.++.. +..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~- 282 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD- 282 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-
Confidence 001112223488999999999 78999999999999999987643 55555
Q ss_pred CCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCeE----EEEee-c--CCceEEEEEeCCC-EEEEEeCCCeEEEE
Q psy3053 754 DINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGMQ----VCNKV-F--EEKLLCLSWAGEE-KVILGGALGMVYLV 823 (917)
Q Consensus 754 ~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~~----i~~~~-~--~~~i~~l~~s~~~-~lv~gs~dG~I~vw 823 (917)
.|...|.+++|+|+ +++|++++.||.|++||+.+++. ..... + ...+.+++|++++ .+++++.||.|++|
T Consensus 283 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 283 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 78889999999999 99999999999999999998742 22333 2 5789999998765 57778888888888
Q ss_pred ECC
Q psy3053 824 DLI 826 (917)
Q Consensus 824 dl~ 826 (917)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=266.21 Aligned_cols=301 Identities=11% Similarity=0.136 Sum_probs=213.6
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIY 649 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iw 649 (917)
+++....+|.+.|++++|+|||++|++|+.+| +++|++.+++.......+ .+..+++.++++.+ ++|+.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 45556789999999999999999999988775 789999887665543332 57788889888877 567788999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
|..+++.+..+. |...|.+++++++ .++++ .|+.|++||+.+...... ... . +...+++++ ..++
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~---~~~---~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRIT---DDI---R---FGGVCEFSN--GLLV 151 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSS---CCE---E---EEEEEEEET--TEEE
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeE---Eec---c---CCceEEEEc--cEEE
Confidence 999999998887 6779999999875 45544 488999999976511111 111 1 344566777 5666
Q ss_pred E--EECCCeEEEEECCCCe----------------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCeE
Q psy3053 730 V--GTEAGELIIWSLENHL----------------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM-LNVYDLTTGMQ 790 (917)
Q Consensus 730 s--gs~dG~I~iwDl~~~~----------------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~-I~iwDl~tg~~ 790 (917)
+ |+.+|.|++||+.++. .+..+. +|.+.|.+++|+|+|++|++|+.|++ |++||+++++.
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 6 5889999999999865 155565 89999999999999999999999998 99999999998
Q ss_pred EEEee---cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEE--EEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 791 VCNKV---FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLK--QVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 791 i~~~~---~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~--~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
+..+. +...+.+++|+|++ .+++++.||.|++||+..+.... .+..+ +. ..++. ..-.+..+.
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~------~~--~~~~~---~~~~~~~~~ 299 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW------IN--MKYFQ---SEWSLCNFK 299 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT------EE--CCCCC---CSSCSEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce------ee--ccccc---cccceeEEE
Confidence 88776 77889999998865 46778888899999887652111 11100 00 00000 000011111
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+. ..+......++|+++++.|++++.||.+++|++..
T Consensus 300 ~~--------~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 300 LS--------VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CC--------CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ec--------cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 11 11233456799999999999999999999999853
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=267.26 Aligned_cols=248 Identities=15% Similarity=0.158 Sum_probs=213.3
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC-EEEEEECCCeE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN-QLAVGTEAGEL 737 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs~dG~I 737 (917)
...+|.+.|++++|+|++++|++|+.||.|++||+.++. ..........|...|.+++|+|+++ .+++|+.||.|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 345899999999999999999999999999999987651 1112344568899999999999999 99999999999
Q ss_pred EEEEC-CCCeeeEEecCC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---------CeEEEEeecCCceEEEEE
Q psy3053 738 IIWSL-ENHLMTQQLSDD--INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT---------GMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 738 ~iwDl-~~~~~~~~l~~~--h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t---------g~~i~~~~~~~~i~~l~~ 805 (917)
++||+ .+++. ..+. . |...|.+++|+| +..+++++.|+.|++||+++ ++.+....+...+.++++
T Consensus 82 ~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSE-EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEEeccCCce-Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 99999 87755 4555 6 899999999999 99999999999999999987 666666668889999999
Q ss_pred eCCCEEEEEeCCCeEEEEECCC-CE--EEEEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCC------eEEEE
Q psy3053 806 AGEEKVILGGALGMVYLVDLIQ-VQ--LLKQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECG------RIVTE 873 (917)
Q Consensus 806 s~~~~lv~gs~dG~I~vwdl~~-~~--~i~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg------~~l~~ 873 (917)
++++ +++++.+|.|++||+.+ +. .......|...+.++ ++ +++++++|+.||.|++|+++.+ +....
T Consensus 159 ~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 159 NSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp CSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred cCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 9986 99999999999999988 44 334455688889888 56 7899999999999999999887 77778
Q ss_pred ecCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEE
Q psy3053 874 LAGHED---------AISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYV 914 (917)
Q Consensus 874 l~~h~~---------~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~ 914 (917)
+.+|.. .|.+++|+|++++|++|+.||.|++||+... .+..
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 888765 9999999999999999999999999999854 4443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=277.47 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=182.3
Q ss_pred EEEeCCCCEEEEEecccEEEEEEeccCeee-----EEeccCCCceeEEEecC--------CCCEEEEEECCCeEEEEeCC
Q psy3053 628 LCILPDNCTMLVGCWDSCVVIYDVECGRIV-----TELAGHEDAISCVAWDE--------KRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 628 l~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i-----~~l~~H~~~Vt~l~~sp--------d~~~L~Sgs~DgtI~vWdl~ 694 (917)
..+.+++..+++|+.|++|++||.+++... ..+.+|.+.|.+++|+| ++++|+|||.|++|++||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 334556778999999999999999988653 34679999999999997 78999999999999999987
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEec---------------------
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLS--------------------- 752 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~--------------------- 752 (917)
++ ........|...+.+++|+|++ .+|++|+.||+|++||+++++......
T Consensus 175 ~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 175 DE-------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp TT-------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred CC-------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 65 3455667889999999999987 589999999999999999876543321
Q ss_pred ---CCCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 753 ---DDINASVNGVLFS-EDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 753 ---~~h~~~V~~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
.+|...+.++.|+ ++|+.+++++.|+++++||+.++.....+. +...+..+.+.++
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~------------------- 308 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN------------------- 308 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS-------------------
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc-------------------
Confidence 1456678888887 688889999999999999987765443221 1112222222222
Q ss_pred CEEEEEEecCCCceEEE-e--ecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3053 828 VQLLKQVRAHKDAVLSL-H--FDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 828 ~~~i~~l~~h~~~V~si-s--~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~I 904 (917)
......+...+.++ . .++.++++|+.||.|++||+.+++......+|..+|.+++|||||++||+++.|| +.+
T Consensus 309 ---~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 309 ---VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp ---EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred ---cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 11222222222222 2 2555778888999999999999998888888999999999999999999998776 777
Q ss_pred EecCcc
Q psy3053 905 YATEFY 910 (917)
Q Consensus 905 Wdl~~~ 910 (917)
|.+.++
T Consensus 385 vrL~gf 390 (393)
T 4gq1_A 385 TRLMGF 390 (393)
T ss_dssp EEEGGG
T ss_pred EEEeCc
Confidence 776543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=269.45 Aligned_cols=279 Identities=11% Similarity=0.065 Sum_probs=215.0
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec---------cCee
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE---------CGRI 656 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~---------tg~~ 656 (917)
..+.+++..+++|+.||+|++||+.+++.+..+. ...|.++.++|+ +++|+.|++|++|+.. +++.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455788999999999999999999998887776 456788888888 9999999999999665 4554
Q ss_pred eEEec-cCCCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-eccCCCceEEEEEeCCCCEEEEEE
Q psy3053 657 VTELA-GHEDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 657 i~~l~-~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
+..+. +|.+.|.+++|+| +++++++|+.||+|++||+.++. .... ...+...+.+++|+|++.++++|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 44443 6888999999999 99999999999999999998762 2221 234566799999999999999999
Q ss_pred CCCeEEEEECCCCeee-EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 733 EAGELIIWSLENHLMT-QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
.||.|++||+++++.. ..+...|.+.|.+++|+|+|.+|++++ |+.|++||+++++....+... .
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~--------~----- 255 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY--------T----- 255 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC--------B-----
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc--------c-----
Confidence 9999999999999887 777744899999999999999999999 559999999876432211100 0
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC-CCeEEEEECcCCeEEEEecCCCCCEEEEEEcC--
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-DSCVVIYDVECGRIVTELAGHEDAISCVAWDE-- 888 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~-DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp-- 888 (917)
. ...... ....+++++|++|++++. |+.|++|++.++...... .++..++|++
T Consensus 256 ----------------~---~~~~~~-~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~ 311 (343)
T 3lrv_A 256 ----------------I---PEFKTG-TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDT 311 (343)
T ss_dssp ----------------C--------C-CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----
T ss_pred ----------------c---cccccc-ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccc
Confidence 0 000000 022344778999999988 999999998665433322 5678889998
Q ss_pred -CCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 889 -KRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 889 -dg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
++..+++++.||.+.++-..+.....
T Consensus 312 ~~~~~l~~~~~d~~~~~~~~~~~~~~i 338 (343)
T 3lrv_A 312 ADFTDMDVVCGDGGIAAILKTNDSFNI 338 (343)
T ss_dssp CCCCEEEEEEETTEEEEEEECSSEEEE
T ss_pred cccceeEEEecCCceEEEEecCCeEeE
Confidence 88999999999999998776554443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=273.93 Aligned_cols=261 Identities=14% Similarity=0.195 Sum_probs=219.3
Q ss_pred ccccCCccc---cceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCC-------ceeeeeeccccceEEEEE
Q psy3053 562 NSWCDKSIL---EPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCI 630 (917)
Q Consensus 562 ~~w~~~~~l---~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~~~~~~~~V~sl~~ 630 (917)
.+|+..... .....+.+|.+.|++++|+| ++++|++|+.||+|++|++.++ +.+..+.+|...|.+++|
T Consensus 60 ~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 139 (402)
T 2aq5_A 60 LVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139 (402)
T ss_dssp EEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEE
T ss_pred EEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEE
Confidence 467643221 34566889999999999999 9999999999999999999987 567788899999999999
Q ss_pred eCCC-CEEEEEecccEEEEEEeccCeeeEEe--ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee
Q psy3053 631 LPDN-CTMLVGCWDSCVVIYDVECGRIVTEL--AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 631 spd~-~~Lasgs~Dg~I~Iwdl~tg~~i~~l--~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
+|++ .++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++++|++++.||.|++||++++ ....
T Consensus 140 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~ 212 (402)
T 2aq5_A 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-------TVVA 212 (402)
T ss_dssp CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------EEEE
T ss_pred CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-------ceee
Confidence 9998 69999999999999999999999999 889999999999999999999999999999999876 2233
Q ss_pred ee-ccCCCc-eEEEEEeCCCCEEEEE---ECCCeEEEEECCCCee-eEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeE
Q psy3053 708 SQ-LDLDNR-IKCLAISKDNNQLAVG---TEAGELIIWSLENHLM-TQQLSDDINASVNGVLFSEDGCRVLSCG-NNCML 780 (917)
Q Consensus 708 ~~-~~h~~~-V~~l~~spdg~~Lasg---s~dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I 780 (917)
.. ..|.+. +.+++|+|++.++++| +.||.|++||++++.. .......+...+.+++|+|+++.+++++ .||.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 33 456655 8999999999999999 7899999999998654 3333335778899999999999997554 79999
Q ss_pred EEEECCCCe----EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 781 NVYDLTTGM----QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 781 ~iwDl~tg~----~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
++||+.+++ .+....+...+.+++|+|++.+++ +.++.+++|++.++..
T Consensus 293 ~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~-s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV-NKCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG-GGTEEEEEEEEETTEE
T ss_pred EEEEecCCCcceEeecccccCCcccceEEecccccce-ecceeEEEEEcCCCcE
Confidence 999999887 233344568899999999877655 4677999999987654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=263.54 Aligned_cols=285 Identities=14% Similarity=0.138 Sum_probs=239.5
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-----eeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-----SAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
+.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+..|...|.+++|++++..+++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455555554 45699999988888888889999999999998876 34467788999999999999999999999
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
|++||+++++.+..+..|...+.+++|+|+++.+++++ .|+.|++||+.++ ...........+.+++|+|+
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~ 264 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK--------LEIRKTDKIGLPRGLLLSKD 264 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--------EEEEECCCCSEEEEEEECTT
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--------cEEEEecCCCCceEEEEcCC
Confidence 99999999999999999999999999999999885544 7999999999765 23333445567999999999
Q ss_pred CCEEEEEE--------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEEEEee
Q psy3053 725 NNQLAVGT--------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 725 g~~Lasgs--------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
++.+++++ .||.|++||+.+++....+. +...+.+++|+|+++.+ ++++.|+.|++||+.+++......
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 99999888 58899999999998877764 55688999999999755 566889999999999999988888
Q ss_pred cCCceEEEEEeCCCE-EEEEeC---------------CCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC-
Q psy3053 796 FEEKLLCLSWAGEEK-VILGGA---------------LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW- 856 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~-lv~gs~---------------dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~- 856 (917)
+...+.++++++++. +++++. ||.|++||+.+++.+..+..+ ..+.++ +++|++|++++.
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECC
Confidence 888999999998874 666655 479999999999999888764 456666 678999988875
Q ss_pred CCeEEEEECcC
Q psy3053 857 DSCVVIYDVEC 867 (917)
Q Consensus 857 DG~I~Iwdl~t 867 (917)
|+.|++|+++.
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999863
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=272.95 Aligned_cols=256 Identities=11% Similarity=0.189 Sum_probs=206.2
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-----------eeEEeccCC------------CceeEEEecCCC-
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-----------IVTELAGHE------------DAISCVAWDEKR- 676 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-----------~i~~l~~H~------------~~Vt~l~~spd~- 676 (917)
+...|.+++|+|++++||+|+.||.|++|++.+++ ....+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 56789999999999999999999999999999877 578889998 889999999998
Q ss_pred -CEEEEEECCCeEEEEeCCCCCCCcc------------------C--C------------c-ceeeeccCCCceEEEEEe
Q psy3053 677 -KRLISGSWDCTVRVWNTGASWSHMK------------------P--S------------K-SLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 677 -~~L~Sgs~DgtI~vWdl~~~~~~~~------------------~--~------------~-~~~~~~~h~~~V~~l~~s 722 (917)
..|++++.||+|++||+.++..... . . . ......+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 7999999999999999865311000 0 0 0 001135799999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CeeeEEe------cCCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeE----
Q psy3053 723 KDNNQLAVGTEAGELIIWSLEN-HLMTQQL------SDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQ---- 790 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~-~~~~~~l------~~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~---- 790 (917)
|+++.+++| .||.|++||+++ +.....+ ...|...|.+++|+|++ ..+++++.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999994 4444422 23788999999999998 9999999999999999998875
Q ss_pred EEEeecC-C------------ceEEEEEeCCCE-EEEEeCCCeEEEEECCC-CEEEEEEecCCCce--------------
Q psy3053 791 VCNKVFE-E------------KLLCLSWAGEEK-VILGGALGMVYLVDLIQ-VQLLKQVRAHKDAV-------------- 841 (917)
Q Consensus 791 i~~~~~~-~------------~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~-~~~i~~l~~h~~~V-------------- 841 (917)
...+... . .+.+++|++++. +++++. |.|++||+.+ ++++..+.+|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 344 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence 4444333 2 899999998875 555566 9999999997 88888888886422
Q ss_pred ---EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC
Q psy3053 842 ---LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 842 ---~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
.++++++++|++|+.||.|++||+.+++.+ .+.+|..
T Consensus 345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~ 384 (447)
T 3dw8_B 345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRE 384 (447)
T ss_dssp CCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCST
T ss_pred ceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeeccc
Confidence 456889999999999999999999998876 4444543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=252.66 Aligned_cols=289 Identities=10% Similarity=0.096 Sum_probs=216.2
Q ss_pred ccceeeeccCCcc----eEEEEEeCCCc---EEEEEecCCceEEEeccCC---ceeeeeeccccceEEEEEeCCCCEEEE
Q psy3053 570 LEPLHFCHSHKEA----ITAVAICGEGI---SVASVGRDAMLKIHSLKTG---RQERSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 570 l~~~~~l~~H~~~----Vtsv~fSpdg~---~Lasgs~Dg~I~IWd~~t~---~~~~~~~~~~~~V~sl~~spd~~~Las 639 (917)
++.+..++.-.+. +.++-|-..|- -+++++ ...|++|+..++ +.++++.+|..+|..+++.||..-|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 4555555544332 34455544442 455555 678999999998 789999999999999999998765554
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCC----CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd----~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
..- | .-+...|.+++++|+ ++.+++++.+ +++|++.+
T Consensus 104 ~~~-----------~------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~-------------------- 144 (356)
T 2w18_A 104 VAL-----------G------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK-------------------- 144 (356)
T ss_dssp EEE-----------C------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT--------------------
T ss_pred eee-----------c------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCC--------------------
Confidence 321 1 125568999999999 9999998854 77786532
Q ss_pred eEEEEEeCCCCEEEEEE--CCCeEEEEEC-CCCeeeEEecCCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCe
Q psy3053 716 IKCLAISKDNNQLAVGT--EAGELIIWSL-ENHLMTQQLSDDINASVNGVLFSE---DGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs--~dG~I~iwDl-~~~~~~~~l~~~h~~~V~~v~fsp---dg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
++++.+++ .|+.|++|++ .+++.+..+. .|...+..++|++ ++..|++++.|++|++||+.+|+
T Consensus 145 ---------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 145 ---------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp ---------TEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred ---------CcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 33333322 4677777777 3366555555 7888899999999 78999999999999999999999
Q ss_pred EEEEeec----CCceEEEEEeCCCEE-------------EEEeCCCeEEEEECCCCEEEEEE-----ecCCCceEEEeec
Q psy3053 790 QVCNKVF----EEKLLCLSWAGEEKV-------------ILGGALGMVYLVDLIQVQLLKQV-----RAHKDAVLSLHFD 847 (917)
Q Consensus 790 ~i~~~~~----~~~i~~l~~s~~~~l-------------v~gs~dG~I~vwdl~~~~~i~~l-----~~h~~~V~sis~d 847 (917)
.+..+.. ...+.+++++|++.+ ++|+.|++|++||..+++.+..+ .+|...+.+.+.+
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s 294 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK 294 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC
Confidence 9888753 235677788888764 45778999999999999988765 3677777777778
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS-CVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~-slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..+++|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+||+.|++|+|||+.
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 99999999999999999999999999999987655 68999999999999999999999963
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=275.59 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=200.3
Q ss_pred cccccCCcc-ccceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCceeeeeec--cccceEEEEEeCCCCE
Q psy3053 561 SNSWCDKSI-LEPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAVL--SSMTLSSLCILPDNCT 636 (917)
Q Consensus 561 ~~~w~~~~~-l~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~--~~~~V~sl~~spd~~~ 636 (917)
..+|+.... ......+.+|.+.|++|+|+| ++++|+||+.||+|++||+.++........ +...+.+++|+|++.+
T Consensus 144 i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223 (435)
T ss_dssp EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE
T ss_pred EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE
Confidence 368986543 234455679999999999998 689999999999999999986644332222 3445788999999999
Q ss_pred EEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
|++|+.||.|++||++ ++.+..+.+|.+.|++++|+|++. ++++|+.|++|++||+.+... ........+|...
T Consensus 224 l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~----~~~~~~~~~h~~~ 298 (435)
T 4e54_B 224 VVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG----KASFLYSLPHRHP 298 (435)
T ss_dssp EEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS----SSCCSBCCBCSSC
T ss_pred EEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc----cceEEEeeecccc
Confidence 9999999999999986 566778899999999999999875 788999999999999987521 1223334578999
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC------CCeEEEEEecCCCEEEEEeC------------C
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN------ASVNGVLFSEDGCRVLSCGN------------N 777 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~------~~V~~v~fspdg~~L~s~s~------------D 777 (917)
|++++|+|+|.+|++|+.||.|++||+.++.....+. .|. ..+....|+|++..+++++. +
T Consensus 299 v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 299 VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 9999999999999999999999999999988776665 222 12345567777777776642 3
Q ss_pred CeEEEEECCCCeEEEEee--cCCceEEE-EEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 778 CMLNVYDLTTGMQVCNKV--FEEKLLCL-SWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~--~~~~i~~l-~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
+.|++||..+++.+.... +...|.++ +|+|++.+++++.|+.|++|++.+++.
T Consensus 378 ~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 378 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred CEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 568888888887776543 34455555 467776666666677777777776654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=252.82 Aligned_cols=268 Identities=10% Similarity=0.154 Sum_probs=224.5
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
..+++++.|+.|++||+.+++.+..+.+|. .+.+++|+|+++.+ ++++.|++|++||+.++ .......+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eEEEEEECC
Confidence 467888999999999999999999888775 48999999999987 67779999999999776 233334445
Q ss_pred CceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEE
Q psy3053 714 NRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i 791 (917)
..+.+++|+|+++.+++++ .++.|++||+.+++.+..+. +...+.+++|+|+|+.+ ++++.++.|++||+.+++.+
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 5899999999999876554 67999999999999888776 44578999999999987 67778999999999999998
Q ss_pred EEeecCCceEEEEEeCCCE-E-EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEe---CCCeEEEEE
Q psy3053 792 CNKVFEEKLLCLSWAGEEK-V-ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGC---WDSCVVIYD 864 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~~-l-v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs---~DG~I~Iwd 864 (917)
........+.++++++++. + ++++.++.|++||+.+++....+.. ...+.++ +++++.+++++ .++.|++||
T Consensus 152 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 8888888899999998774 4 4667889999999999998877764 4566666 66899988888 689999999
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcc-eEEEE
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRL-ISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~L-aSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||++.. .+..+
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 231 TGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 99999999888765 57899999999988 67788999999999854 44443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=249.50 Aligned_cols=261 Identities=20% Similarity=0.246 Sum_probs=204.9
Q ss_pred ccccccCCccccceee--eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE
Q psy3053 560 VSNSWCDKSILEPLHF--CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 560 ~~~~w~~~~~l~~~~~--l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L 637 (917)
..++|+..++ ++++. +.+|...|++++|+|+|+++++|+.||+|++|++.+++.++.+.+|...+.++ ++++..+
T Consensus 46 tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~--~~~~~~l 122 (318)
T 4ggc_A 46 SVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYIL 122 (318)
T ss_dssp EEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEETTEE
T ss_pred EEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe--ecCCCEE
Confidence 3478986654 34444 45788899999999999999999999999999999999999999998877665 4567899
Q ss_pred EEEecccEEEEEEeccC-eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce
Q psy3053 638 LVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI 716 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V 716 (917)
++|+.++.+++|+...+ ..+..+.+|...+.+++++++++++++++.||+|++||+.++... .........+...|
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~v 199 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTFTQHQGAV 199 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB---SCCSEEECCCCSCE
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc---ccceeeecccCCce
Confidence 99999999999998875 556778899999999999999999999999999999999876321 12334456678899
Q ss_pred EEEEEeCCCCEE---EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeEE
Q psy3053 717 KCLAISKDNNQL---AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGMQV 791 (917)
Q Consensus 717 ~~l~~spdg~~L---asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~~i 791 (917)
.++++++++..+ ++|+.++.|++||........... +...+..+.|+|++..+++++ .|+.|++||+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--- 274 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 274 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---
Confidence 999999977533 456778999999999888776664 677899999999988877654 4566666665554
Q ss_pred EEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 792 CNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
+++.++.+|.+.|+++ +|++++|++|+.||+|++||+.+.
T Consensus 275 -------------------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 275 -------------------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -------------------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -------------------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 4445556666666666 446667777777777777776543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=265.85 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=209.7
Q ss_pred eeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccC----------CceeeeeeccccceEEEEEeCCCC-EEEEEe
Q psy3053 574 HFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKT----------GRQERSAVLSSMTLSSLCILPDNC-TMLVGC 641 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t----------~~~~~~~~~~~~~V~sl~~spd~~-~Lasgs 641 (917)
.....|.+.|++++|+|+ +.++++++.||.|++|++.+ ......+..|...+.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 68999999999999999987 567778889999999999999988 999999
Q ss_pred cccEEEEEEeccCee-------eEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 642 WDSCVVIYDVECGRI-------VTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~-------i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
.||.|++|++.++.. ...+.+|...|.+++|+| ++..+++++.||.|++||+++... .........|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----~~~~~~~~~~~ 277 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----SKPSHTVDAHT 277 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----SSCSEEEECCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----CcceeEeecCC
Confidence 999999999987432 456778999999999999 778999999999999999986521 12333445788
Q ss_pred CceEEEEEeCCCC-EEEEEECCCeEEEEECCC-CeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCC---
Q psy3053 714 NRIKCLAISKDNN-QLAVGTEAGELIIWSLEN-HLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTT--- 787 (917)
Q Consensus 714 ~~V~~l~~spdg~-~Lasgs~dG~I~iwDl~~-~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~t--- 787 (917)
..|++++|+|++. ++++|+.||.|++||+++ +..+..+. .|...|.+++|+|++. ++++++.||.|++||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 9999999999987 789999999999999998 45666776 7899999999999985 689999999999999976
Q ss_pred -----------CeEEEEe-ecCCceEEEEEeCCC--EEEEEeCCCeEEEEECCC
Q psy3053 788 -----------GMQVCNK-VFEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 788 -----------g~~i~~~-~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~ 827 (917)
.+.+... .+...+.+++|++++ .+++++.||.|++|++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 2333333 356679999999875 477888889999998864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=292.90 Aligned_cols=247 Identities=18% Similarity=0.195 Sum_probs=209.6
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECC
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEA 734 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~d 734 (917)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++. ........+|.+.|.+++|+++ ++.+++|+.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 34678999999999999999999999999999999986431 1234456689999999999988 9999999999
Q ss_pred CeEEEEECCCCe--eeEEecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCe---EEEEeecCCceEEEEEeC
Q psy3053 735 GELIIWSLENHL--MTQQLSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGM---QVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 735 G~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~---~i~~~~~~~~i~~l~~s~ 807 (917)
|.|++||+.+++ ....+. .|...|.+++|+|+ +..+++|+.||.|++||++++. ......+...+.+++|+|
T Consensus 77 g~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp SCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 999999999986 555555 78999999999999 9999999999999999998773 333445778899999998
Q ss_pred --------------CCEEEEEeCCCeEEEEECCCC----EEEEEEecCCCceEEE--eec---CCEEEEEeCCCeEEEEE
Q psy3053 808 --------------EEKVILGGALGMVYLVDLIQV----QLLKQVRAHKDAVLSL--HFD---NCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 808 --------------~~~lv~gs~dG~I~vwdl~~~----~~i~~l~~h~~~V~si--s~d---g~~Lasgs~DG~I~Iwd 864 (917)
...+++|+.||.|++||++++ .....+.+|...|+++ +|+ ++++++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 457999999999999999877 6677888999999999 556 88999999999999999
Q ss_pred CcCCe-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGR-----IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~-----~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.++. ......+|.+.|++++|+|+|++|++|+.||.|++|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 98864 3333456889999999999999999999999999999973
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-25 Score=261.65 Aligned_cols=322 Identities=9% Similarity=0.056 Sum_probs=252.5
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe--ccCeeeEEeccCC
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV--ECGRIVTELAGHE 664 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl--~tg~~i~~l~~H~ 664 (917)
+++|++..+++++.|++|.+||..+++.+..+..+.. +.+++++||++++++++.|++|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3789999999999999999999999999988875433 789999999999999999999999999 8899888887 45
Q ss_pred CceeEEEecC----CCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeee--------ccCCCceEEEEEeCCCCE-EEE
Q psy3053 665 DAISCVAWDE----KRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQ--------LDLDNRIKCLAISKDNNQ-LAV 730 (917)
Q Consensus 665 ~~Vt~l~~sp----d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~-Las 730 (917)
..+..++|+| +|+++++++ .+++|.+||..+..... .+... ......+.++.++|++.. +++
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~----~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ----IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE----EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce----eecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 5689999999 999999988 48999999987652110 00000 012337899999997754 556
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec-----CCceEEEE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF-----EEKLLCLS 804 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~-----~~~i~~l~ 804 (917)
...+|.|.+||+.+.+.+......+...+.+++|+|+|+++++++ .+++|.+||..+++.+..+.. .+....+
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 677899999999887654411113566788999999999877665 588999999999998877653 3333333
Q ss_pred EeCC-CEEEEEe--CCCeEEEEECCC-------CEEEEEEecCCCceEEE--eecCCEEEEEe-------CCCeEEEEEC
Q psy3053 805 WAGE-EKVILGG--ALGMVYLVDLIQ-------VQLLKQVRAHKDAVLSL--HFDNCTMLVGC-------WDSCVVIYDV 865 (917)
Q Consensus 805 ~s~~-~~lv~gs--~dG~I~vwdl~~-------~~~i~~l~~h~~~V~si--s~dg~~Lasgs-------~DG~I~Iwdl 865 (917)
++|+ +.+++.+ .+++|.+||..+ ++.++++.+|.+.+..+ +|+++.|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 3554 5555443 579999999998 89999999988776555 88999999987 3779999999
Q ss_pred cCCeEE-EEe--------cCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCcc-eEEEE
Q psy3053 866 ECGRIV-TEL--------AGHEDAISCVAWDEKRKRLISGN-----LVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 866 ~tg~~l-~~l--------~~h~~~V~slafSpdg~~LaSgs-----~DG~V~IWdl~~~-ll~~L 915 (917)
.+++.. ..+ ..+...+..++|+|+|+.|+++. .|+.|.|||.++. ++.++
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 998876 443 35677899999999999998763 4799999999865 55544
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=255.69 Aligned_cols=207 Identities=11% Similarity=0.082 Sum_probs=175.1
Q ss_pred ccCCcceEEEEEeCCCcEEEEEe--cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 577 HSHKEAITAVAICGEGISVASVG--RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs--~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
..+...+.+++|||||+++++++ .|++|+|||+.+++.+..+. |...|.+++|+|||+++++++.+ .+.+|+..++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 34556789999999999987554 68999999999999888775 66789999999999999999855 5667777777
Q ss_pred eeeE--EeccCCCceeEEEecCCCCEEEEEECCC----eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 655 RIVT--ELAGHEDAISCVAWDEKRKRLISGSWDC----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 655 ~~i~--~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
+.+. ...+|...|.+++|+|+++.+++++.|+ .+++|++...... ........+|...|++++|+|+|++|
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS---VLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---EEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---ceeeeeecCCCCCeEeEEECCCCCce
Confidence 6543 3457899999999999999999999887 6888987654111 11223456788999999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
|+|+.||+|++||+.+++++..+..+|...|++++|+|||++|++|+.|++|+|||+..+
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999876689999999999999999999999999999999643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=256.70 Aligned_cols=243 Identities=10% Similarity=0.065 Sum_probs=205.7
Q ss_pred eeccCCcceEEEEEeCCCcEE-EEEecCCceEEEecc--CCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 575 FCHSHKEAITAVAICGEGISV-ASVGRDAMLKIHSLK--TGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~L-asgs~Dg~I~IWd~~--t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
...+|.+.|++++|+|+|++| ++|+.||.|++|++. +++.+..+. .+...|.+++|+|++++|++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 346789999999999999996 899999999999999 888888776 456789999999999999999999999999
Q ss_pred EeccCeeeE----EeccCCCceeEEEecCC---CCEEEEEECCCeEEEEeCCCCCCCccCCcceee-eccCCCceEEEEE
Q psy3053 650 DVECGRIVT----ELAGHEDAISCVAWDEK---RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIKCLAI 721 (917)
Q Consensus 650 dl~tg~~i~----~l~~H~~~Vt~l~~spd---~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~~l~~ 721 (917)
++.+++... .+.+|.+.|++++|+|+ +++|++|+.|++|++||+.++ ..... ..+|...|.+++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-------FIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-------TCEEEECCCCSSCEEEEEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-------ceeeeeecCCCCceEEEEE
Confidence 998887554 77889999999999999 999999999999999998765 22333 4478999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecC------------------------CCCCCeEEEEEecCCCEEEEEe-C
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSD------------------------DINASVNGVLFSEDGCRVLSCG-N 776 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~------------------------~h~~~V~~v~fspdg~~L~s~s-~ 776 (917)
+ ++++|++|+.||.|++||+.+++.+..+.. .....|.+++|+|+++++++++ .
T Consensus 250 s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 250 G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 9 999999999999999999999988877652 2245789999999999999999 8
Q ss_pred CCeEEEEEC--CCC---eEEEEeecCCceEEEEEeCCCEEEEEeC-------CCeEEEEEC
Q psy3053 777 NCMLNVYDL--TTG---MQVCNKVFEEKLLCLSWAGEEKVILGGA-------LGMVYLVDL 825 (917)
Q Consensus 777 Dg~I~iwDl--~tg---~~i~~~~~~~~i~~l~~s~~~~lv~gs~-------dG~I~vwdl 825 (917)
|+.|++|++ .++ ..+..+.....+.+++|++++.+++.+. +..|.+|.+
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 999999999 665 6666666678899999999766666544 344677754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=252.52 Aligned_cols=244 Identities=10% Similarity=0.146 Sum_probs=185.6
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
+|++.+.+.+....+|.+.|++++|+|++++|++|+.|| +++|++.+. ...... +...+..+++.++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMSQ-EMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEEE-ECSCCCEEEECTTSSE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeeee-ecCCeEEEEEcCCCCE
Confidence 566777777777889999999999999999999988775 789998654 111111 1224788899998887
Q ss_pred E-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCceEEEEE
Q psy3053 728 L-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 728 L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~~~i~~l~~ 805 (917)
+ ++|+.|+.|++||+.+++.+..+. +...|.++++++++ ++++ .|+.|++||+.++ +.+..... ....+++
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~ 145 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEF 145 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEE
T ss_pred EEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEE
Confidence 7 567788999999999999988886 66799999998874 3433 4789999999987 54444333 3444556
Q ss_pred eCCCEEEE--EeCCCeEEEEECCCCE---------------E-EEEEecCCCceEEE--eecCCEEEEEeCCCe-EEEEE
Q psy3053 806 AGEEKVIL--GGALGMVYLVDLIQVQ---------------L-LKQVRAHKDAVLSL--HFDNCTMLVGCWDSC-VVIYD 864 (917)
Q Consensus 806 s~~~~lv~--gs~dG~I~vwdl~~~~---------------~-i~~l~~h~~~V~si--s~dg~~Lasgs~DG~-I~Iwd 864 (917)
++ ..+++ |+.+|.|++||+.+++ + +..+.+|.+.|.++ +|+|++|++|+.||+ |++||
T Consensus 146 s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 146 SN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp ET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred Ec-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 66 46665 5789999999999865 2 67889999999999 669999999999998 99999
Q ss_pred CcCCeEEEEec-C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIVTELA-G-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l~~l~-~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.+++++..+. + |.+.|.+++|+|+|++|++|+.||+|++||++.
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 99999999998 5 999999999999999999999999999999964
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=254.04 Aligned_cols=234 Identities=11% Similarity=0.088 Sum_probs=195.6
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
+.+++..+++|+.||+|++||+.+++.+..+. ...|.+++++|+ +++|+.|++|++|+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------- 104 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------- 104 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT--------------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC--------------
Confidence 34578899999999999999999999888776 567888899986 99999999999999632
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCC
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~t 787 (917)
.+.+||+.+++.+......|.+.|.+++|+| +++++++++.||.|++||+++
T Consensus 105 --------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 105 --------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp --------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred --------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 4677898888877777767888999999999 999999999999999999999
Q ss_pred CeEEEEe--ecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEE-EEEec-CCCceEEE--eecCCEEEEEeCCCeE
Q psy3053 788 GMQVCNK--VFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLL-KQVRA-HKDAVLSL--HFDNCTMLVGCWDSCV 860 (917)
Q Consensus 788 g~~i~~~--~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i-~~l~~-h~~~V~si--s~dg~~Lasgs~DG~I 860 (917)
++..... .+...+.+++|+|++. +++|+.||.|++||+++++.+ ..+.+ |.+.|.++ +|++.+|++|+ |+.|
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v 237 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTV 237 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBE
T ss_pred CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeE
Confidence 9886554 3445699999998775 556799999999999999877 78888 99999999 55899999999 5599
Q ss_pred EEEECcCCeEEEEecC---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecCc
Q psy3053 861 VIYDVECGRIVTELAG---HEDAIS--CVAWDEKRKRLISGNL-VGAPKLYATEF 909 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~---h~~~V~--slafSpdg~~LaSgs~-DG~V~IWdl~~ 909 (917)
++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|++|+++.
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 9999998876555443 434444 6999999999999998 99999999853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=256.47 Aligned_cols=266 Identities=11% Similarity=0.052 Sum_probs=184.6
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee-----eeeeccccceEEEEEeC--------CCCEEEEEec
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-----RSAVLSSMTLSSLCILP--------DNCTMLVGCW 642 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-----~~~~~~~~~V~sl~~sp--------d~~~Lasgs~ 642 (917)
...|...+....+++++.+|++++.|++|++||..++... ..+.+|...|.+++|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3456666677777888899999999999999999887643 44678999999999998 7899999999
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCC------------------
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPS------------------ 703 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~------------------ 703 (917)
|++|+|||+.++..+..+.+|.+.|.+++|+|++ .+|++|+.||+|++||+.++.......
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999998888888999999999999987 479999999999999998764211100
Q ss_pred cceeeeccCCCceEEEEEe-CCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
.......+|...+.++.|+ ++++.+++++.|+.+++||+..++....+. .+...+..+.+.|+++.+......
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGISLFPSL----- 318 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCS-----
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEccccccccccCcc-----
Confidence 0111234677889999987 799999999999999999999888777766 666777777777765433221111
Q ss_pred EECCCCeEEEEeecCCceEEEEEe-CCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCC
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWA-GEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s-~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG 858 (917)
+.++.+. .++. +++|+.||.|++||..+++......+|..+|.++ +|||++||+++.+|
T Consensus 319 -----------------~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 319 -----------------LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp -----------------SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred -----------------eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 1111111 2334 4567789999999999998888888899999988 66999999998776
Q ss_pred eEEEEEC
Q psy3053 859 CVVIYDV 865 (917)
Q Consensus 859 ~I~Iwdl 865 (917)
+.+|.+
T Consensus 382 -v~lvrL 387 (393)
T 4gq1_A 382 -VLLTRL 387 (393)
T ss_dssp -EEEEEE
T ss_pred -eEEEEE
Confidence 666654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=266.15 Aligned_cols=322 Identities=11% Similarity=0.018 Sum_probs=246.2
Q ss_pred CcceEEEEEeCCCcEEEEEec-CC-----ceEEEeccCCceeeeeecccc------------------------ceEEEE
Q psy3053 580 KEAITAVAICGEGISVASVGR-DA-----MLKIHSLKTGRQERSAVLSSM------------------------TLSSLC 629 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~-Dg-----~I~IWd~~t~~~~~~~~~~~~------------------------~V~sl~ 629 (917)
...|.+++|||||++|++++. |+ .|.+||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 899999999887766655433 378999
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
|+|||+.|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|.+||+.++.. ..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-------~~ 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-------MQ 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-------EE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-------EE
Confidence 9999999999886 999999999883 4556777888999999999999999988 56999999977521 11
Q ss_pred eeccCCC----------------ceEEEEEeCCCCEEEEEECCC---------------------------------eEE
Q psy3053 708 SQLDLDN----------------RIKCLAISKDNNQLAVGTEAG---------------------------------ELI 738 (917)
Q Consensus 708 ~~~~h~~----------------~V~~l~~spdg~~Lasgs~dG---------------------------------~I~ 738 (917)
....+.. .+.+++|+|||+.|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 1111111 247899999999999987765 789
Q ss_pred EEECCC-CeeeEEecC-CCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCeEEEEeecCC-----ceEEEEEe
Q psy3053 739 IWSLEN-HLMTQQLSD-DINASVNGVLFSEDGCRVLSCGN-----NCMLNVYDLTTGMQVCNKVFEE-----KLLCLSWA 806 (917)
Q Consensus 739 iwDl~~-~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~-----Dg~I~iwDl~tg~~i~~~~~~~-----~i~~l~~s 806 (917)
+||+.+ ++....... .+...+.+++| |||+.|++++. +..|.+||+.+++......... .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876554432 36678999999 99999997764 5689999999987765544322 34578899
Q ss_pred CCCE-EEEEeCCCeEEEEECC-CCEEEEEEecCCCceEE---EeecCCEEEE-EeCCC--eEEEEECcC-CeEEEEecCC
Q psy3053 807 GEEK-VILGGALGMVYLVDLI-QVQLLKQVRAHKDAVLS---LHFDNCTMLV-GCWDS--CVVIYDVEC-GRIVTELAGH 877 (917)
Q Consensus 807 ~~~~-lv~gs~dG~I~vwdl~-~~~~i~~l~~h~~~V~s---is~dg~~Las-gs~DG--~I~Iwdl~t-g~~l~~l~~h 877 (917)
+++. +++++.+|.+.+|.+. ++. ...+..|...+.+ ++++++.|+. ++.++ .+++|++.. +.....+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 8875 4566777877777664 344 7777777777754 4779987754 55555 899999864 555666665
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcceEE
Q psy3053 878 EDAISCVAWDEKRKRLISGNLV----GAPKLYATEFYLLY 913 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~D----G~V~IWdl~~~ll~ 913 (917)
...+.+++|||||++|+....+ +.+.+|+.++..+.
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~ 463 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIA 463 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEE
Confidence 6678999999999998876543 56889988766544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=240.08 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=190.9
Q ss_pred ccccCCccc---cceeeeccCCcceEEEEEeC--CCcEEEEEecCCceEEEeccCC---------ceeeeeeccccceEE
Q psy3053 562 NSWCDKSIL---EPLHFCHSHKEAITAVAICG--EGISVASVGRDAMLKIHSLKTG---------RQERSAVLSSMTLSS 627 (917)
Q Consensus 562 ~~w~~~~~l---~~~~~l~~H~~~Vtsv~fSp--dg~~Lasgs~Dg~I~IWd~~t~---------~~~~~~~~~~~~V~s 627 (917)
.+|+..... +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +....+..|...|.+
T Consensus 36 ~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 115 (351)
T 3f3f_A 36 KVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115 (351)
T ss_dssp EEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred EEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence 578755432 46677889999999999999 6999999999999999999887 446777789999999
Q ss_pred EEEeCC--CCEEEEEecccEEEEEEeccCeeeEEec-------------cCCCceeEEEecCC---CCEEEEEECCCeEE
Q psy3053 628 LCILPD--NCTMLVGCWDSCVVIYDVECGRIVTELA-------------GHEDAISCVAWDEK---RKRLISGSWDCTVR 689 (917)
Q Consensus 628 l~~spd--~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-------------~H~~~Vt~l~~spd---~~~L~Sgs~DgtI~ 689 (917)
++|+|+ +.++++|+.||.|++||+.+++.+..+. +|...+.+++|+|+ +..+++++.|+.+.
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 195 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE
Confidence 999999 9999999999999999999876544332 68889999999997 89999999999998
Q ss_pred EEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC----CEEEEEECCCeEEEEECCCC--------------------
Q psy3053 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN----NQLAVGTEAGELIIWSLENH-------------------- 745 (917)
Q Consensus 690 vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg----~~Lasgs~dG~I~iwDl~~~-------------------- 745 (917)
+|+...+. ........+|...|.+++|+|++ +++++|+.||.|++||++++
T Consensus 196 ~~~~~~~~-----~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
T 3f3f_A 196 YQRGKDGK-----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSA 270 (351)
T ss_dssp EEECTTSC-----EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred EEccCCCc-----eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCc
Confidence 88876541 11244456789999999999998 89999999999999999864
Q ss_pred --------------------------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE
Q psy3053 746 --------------------------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 746 --------------------------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i 791 (917)
+.+..+. +|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 271 DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp --------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred ccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 4455555 78899999999999999999999999999999887544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=245.94 Aligned_cols=296 Identities=11% Similarity=0.091 Sum_probs=230.6
Q ss_pred cceEEEEEeCCCc-EEEEEe----cCC----ceEEEec--cCCcee--eeeeccccceEEEEEeC--------------C
Q psy3053 581 EAITAVAICGEGI-SVASVG----RDA----MLKIHSL--KTGRQE--RSAVLSSMTLSSLCILP--------------D 633 (917)
Q Consensus 581 ~~Vtsv~fSpdg~-~Lasgs----~Dg----~I~IWd~--~t~~~~--~~~~~~~~~V~sl~~sp--------------d 633 (917)
..|...+|++.|. .+++|+ .|| .+++||+ .+++.+ ..+.+|...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566777888775 555765 467 8999999 888877 44777777777666554 2
Q ss_pred CCEEEEEecc------cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC---eEEEEeCCCCCCCccCCc
Q psy3053 634 NCTMLVGCWD------SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC---TVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 634 ~~~Lasgs~D------g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg---tI~vWdl~~~~~~~~~~~ 704 (917)
+..++.++.+ +.|++||++ +.....+.+|.+.|.+++|+|+|+.|++++.|+ .|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-------- 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------- 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------
Confidence 5666666654 799999997 455677888999999999999999999999885 9999999876
Q ss_pred ceeeeccCCCceEEEEEeCCCCEEE-EEECCCe--EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CC--
Q psy3053 705 SLVSQLDLDNRIKCLAISKDNNQLA-VGTEAGE--LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NC-- 778 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~spdg~~La-sgs~dG~--I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg-- 778 (917)
.......+...+.+++|+|+|+.|+ +++.+|. |++||+.+++. ..+. .+...+.+++|+|||+.|++++. ++
T Consensus 214 ~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCCCCEEEEEECCCCCc
Confidence 2234556778899999999999888 5666654 99999998876 4444 57788999999999999998886 44
Q ss_pred eEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCC---CeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEE
Q psy3053 779 MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGAL---GMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTML 852 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~d---G~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~La 852 (917)
.|.+||+.+++..........+.+++|+|++. +++++.+ +.|++||+.+++.. .+..+. .+.++ +|+|+.|+
T Consensus 292 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 292 QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 68888998887544444556788999999875 4445443 58999999988774 455443 56555 77999999
Q ss_pred EEeCCC---eEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 853 VGCWDS---CVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 853 sgs~DG---~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+++.++ .|++||+. +.....+.+|.+.|.+++|+|..
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 988877 79999987 56677889999999999999964
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=229.92 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=189.9
Q ss_pred ccccCCccc--cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCC----CC
Q psy3053 562 NSWCDKSIL--EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD----NC 635 (917)
Q Consensus 562 ~~w~~~~~l--~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd----~~ 635 (917)
.+|+..... +.+++++.|..+|..+++.||..-|+...- -..+...|.+++++|| +.
T Consensus 66 ~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~sla~spd~~~~~~ 128 (356)
T 2w18_A 66 SLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------------GNLEIREIRALFCSSDDESEKQ 128 (356)
T ss_dssp EEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------------CSSSEEEEEEECC------CCE
T ss_pred EEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------------ccccccceEEEEECCCcccccc
Confidence 578876643 678999999999999999998644433221 1124457889999999 89
Q ss_pred EEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.+++++.+ +.+|++.+++.+.. ..+|...|..++++|+|+.++ ....|..
T Consensus 129 ~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~---------------------------s~~~~~~ 179 (356)
T 2w18_A 129 VLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE---------------------------NQFLMPP 179 (356)
T ss_dssp EEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE---------------------------EEEECCC
T ss_pred EEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceee---------------------------eeccCCC
Confidence 99998844 77787766665555 345555555555555554443 2346777
Q ss_pred ceEEEEEeC---CCCEEEEEECCCeEEEEECCCCeeeEEecCCC--CCCeEEEEEecCCCEE------------EEEeCC
Q psy3053 715 RIKCLAISK---DNNQLAVGTEAGELIIWSLENHLMTQQLSDDI--NASVNGVLFSEDGCRV------------LSCGNN 777 (917)
Q Consensus 715 ~V~~l~~sp---dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h--~~~V~~v~fspdg~~L------------~s~s~D 777 (917)
.++.++|++ ++..|++|+.|++|++||+.+++.++++..++ ...+.+++|+|+|..+ ++|+.|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 888899999 77999999999999999999999999997332 3478888999999876 567789
Q ss_pred CeEEEEECCCCeEEEEee------cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceE---EEeecC
Q psy3053 778 CMLNVYDLTTGMQVCNKV------FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL---SLHFDN 848 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~---sis~dg 848 (917)
+++++||..+++.+.... +.....+..+++. .+++|+.||+|++||+.+++.+.++.+|...+. +++|||
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence 999999999998876542 2223444455533 788899999999999999999999999876543 348899
Q ss_pred CEEEEEeCCCeEEEEEC
Q psy3053 849 CTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl 865 (917)
++|++|+.|++|+|||+
T Consensus 339 ~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCcEEEecC
Confidence 99999999999999985
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=267.97 Aligned_cols=337 Identities=13% Similarity=0.055 Sum_probs=258.8
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecC------CceEEEeccCCceeeeeeccccce-------EEEE
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRD------AMLKIHSLKTGRQERSAVLSSMTL-------SSLC 629 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~D------g~I~IWd~~t~~~~~~~~~~~~~V-------~sl~ 629 (917)
+|+...+ ....+.+|.+.|.+++|||||++||+++.+ ..|.+|++.+++ .+.+..|...+ .+++
T Consensus 37 ~~~~~gg--~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~ 113 (1045)
T 1k32_A 37 EHDLKSG--STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAG 113 (1045)
T ss_dssp EEETTTC--CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEE
T ss_pred EEECCCC--cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccccccc
Confidence 4554332 345678899999999999999999988654 379999998776 56677777777 8999
Q ss_pred EeCCCCEEEEEecc------cEEEEEEeccCeee----------------------------------------------
Q psy3053 630 ILPDNCTMLVGCWD------SCVVIYDVECGRIV---------------------------------------------- 657 (917)
Q Consensus 630 ~spd~~~Lasgs~D------g~I~Iwdl~tg~~i---------------------------------------------- 657 (917)
|+|||+++++++.+ ..|++|++.+++..
T Consensus 114 ~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~ 193 (1045)
T 1k32_A 114 FDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS 193 (1045)
T ss_dssp ECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET
T ss_pred CCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC
Confidence 99999977777654 46888887766432
Q ss_pred ---EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 658 ---TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 658 ---~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
..+.+|...+.+++|+++ ..+++++.|+++.+|.+.... ........+. .+.+.+|+|+|+.++++. +
T Consensus 194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g------~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~ 264 (1045)
T 1k32_A 194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG------KDLRKHTSFT-DYYPRHLNTDGRRILFSK-G 264 (1045)
T ss_dssp TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS------CSCEECCCCC-SSCEEEEEESSSCEEEEE-T
T ss_pred CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC------CcceEecCCC-CcceeeEcCCCCEEEEEe-C
Confidence 123457778888899887 666778888999999865421 1112222333 466789999999998874 8
Q ss_pred CeEEEEECCCCeeeEEecCC----------CCCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-ceEE
Q psy3053 735 GELIIWSLENHLMTQQLSDD----------INASVNGVLFS-EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-KLLC 802 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~----------h~~~V~~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-~i~~ 802 (917)
+.|.+||+.... +..+... +...+.+++|+ |||+.+++++ ++.+.+|+..++.......+.. .+.+
T Consensus 265 ~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (1045)
T 1k32_A 265 GSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVR 342 (1045)
T ss_dssp TEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEE
T ss_pred CEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEe
Confidence 999999995544 3344421 23468999999 9999999888 7899999999887665545555 7888
Q ss_pred EEEeCCCE-EEEEeCCCeEE-EEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC
Q psy3053 803 LSWAGEEK-VILGGALGMVY-LVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 803 l~~s~~~~-lv~gs~dG~I~-vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
++|+ ++. ++.++.++.+. +||+.+++... +.+|...+.++ +|||+.|++++.++.|++||+.+++......+|.
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 9999 764 66777788888 99998876543 44777777776 7799999999999999999999999888887899
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC----------cEEEEecCcceEEEE
Q psy3053 879 DAISCVAWDEKRKRLISGNLVG----------APKLYATEFYLLYVL 915 (917)
Q Consensus 879 ~~V~slafSpdg~~LaSgs~DG----------~V~IWdl~~~ll~~L 915 (917)
+.+.+++|||||++|++++.++ .|++||+++..+..+
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 9999999999999999887654 899999987655443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-23 Score=233.98 Aligned_cols=280 Identities=16% Similarity=0.116 Sum_probs=219.1
Q ss_pred cceEEEEEeCCCC-EEEEEe----ccc----EEEEEEe--ccCeee--EEeccCCCceeEEEecC--------------C
Q psy3053 623 MTLSSLCILPDNC-TMLVGC----WDS----CVVIYDV--ECGRIV--TELAGHEDAISCVAWDE--------------K 675 (917)
Q Consensus 623 ~~V~sl~~spd~~-~Lasgs----~Dg----~I~Iwdl--~tg~~i--~~l~~H~~~Vt~l~~sp--------------d 675 (917)
..+....|.+.+. .+++|+ .|| .+++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3556667777764 565776 357 8999999 899877 55888998888887764 1
Q ss_pred CCEEEEEECC------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCe
Q psy3053 676 RKRLISGSWD------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG---ELIIWSLENHL 746 (917)
Q Consensus 676 ~~~L~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG---~I~iwDl~~~~ 746 (917)
+..++.++.+ ++|++||+... ......+|...+.+++|+|+|+.|++++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 5677766654 79999998653 3344556788999999999999999999885 99999999987
Q ss_pred eeEEecCCCCCCeEEEEEecCCCEEE-EEeCCC--eEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeC-CC--e
Q psy3053 747 MTQQLSDDINASVNGVLFSEDGCRVL-SCGNNC--MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGA-LG--M 819 (917)
Q Consensus 747 ~~~~l~~~h~~~V~~v~fspdg~~L~-s~s~Dg--~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~-dG--~ 819 (917)
... +. .+...+.+++|+|||+.|+ +++.++ .|++||+.+++......+...+.+++|+|++. +++++. +| .
T Consensus 215 ~~~-l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 215 VRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp EEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EEE-ee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 754 33 5677899999999999888 555555 49999999988765556677899999999876 555655 34 7
Q ss_pred EEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCC---CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE
Q psy3053 820 VYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWD---SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI 894 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~D---G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La 894 (917)
|++||+.+++. ..+..+...+.++ +|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|++|+
T Consensus 293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 88889988764 3455566667665 7799999988764 58999999988874 455554 899999999999999
Q ss_pred EEeCCC---cEEEEecCcceEEEE
Q psy3053 895 SGNLVG---APKLYATEFYLLYVL 915 (917)
Q Consensus 895 Sgs~DG---~V~IWdl~~~ll~~L 915 (917)
+++.++ .|++||+++..+..|
T Consensus 370 ~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEEEETTEEEEEEEETTSCCEEEC
T ss_pred EEEcCCCccEEEEEECCCCcEEEe
Confidence 988877 799999998776655
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=241.61 Aligned_cols=319 Identities=12% Similarity=0.043 Sum_probs=226.1
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCcee-eeeeccc-----------------cceEEEEEeCCCCEEEEEeccc
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-RSAVLSS-----------------MTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-~~~~~~~-----------------~~V~sl~~spd~~~Lasgs~Dg 644 (917)
+..+.|+ |..+++++.|+ | +||+.+++.+ ..+..+. ..+.+++|+|| +.++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 5557788 66777777888 8 9999998873 3333332 46999999999 666655 469
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC-----CCCCccCCccee-------eeccC
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA-----SWSHMKPSKSLV-------SQLDL 712 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~-----~~~~~~~~~~~~-------~~~~h 712 (917)
.|++||+.+++... +..+...+.+++|+|||+.|+++ .|+.|.+||+.+ +........... ....+
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 99999999887654 44567789999999999999995 689999999987 421100000000 00001
Q ss_pred CCceEEEEEeCCCCEEEEEE---------------------------------CCCeEEEEECCCCeeeEEecC-CCCCC
Q psy3053 713 DNRIKCLAISKDNNQLAVGT---------------------------------EAGELIIWSLENHLMTQQLSD-DINAS 758 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs---------------------------------~dG~I~iwDl~~~~~~~~l~~-~h~~~ 758 (917)
...+.+++|+|||+.|++++ .++.|.+||+.+++....... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 12258999999999999987 457899999999886554432 45677
Q ss_pred eEEEEEecCCCEEEEEeCCC-----eEEEEECCCC-eEEEEe--ecCC---ceEEEEEeC--CCEEE-EEeCCCeEEEEE
Q psy3053 759 VNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTG-MQVCNK--VFEE---KLLCLSWAG--EEKVI-LGGALGMVYLVD 824 (917)
Q Consensus 759 V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg-~~i~~~--~~~~---~i~~l~~s~--~~~lv-~gs~dG~I~vwd 824 (917)
+.+++|+|||+.|++++.++ .|.+||+.++ ...... .... .+.+++|++ ++.++ +++.+|.+.+|+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988775 8999999998 333222 1221 235678998 87654 566778888888
Q ss_pred CC-CCEEEEEEecCCCceEE---EeecCCEEEEEeC-CC----eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q psy3053 825 LI-QVQLLKQVRAHKDAVLS---LHFDNCTMLVGCW-DS----CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 825 l~-~~~~i~~l~~h~~~V~s---is~dg~~Lasgs~-DG----~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaS 895 (917)
+. ++..+..+..+...+.+ ++++++.|+.++. ++ .|..||+.+++ ...+. |...+.+++|||||++++.
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEE
Confidence 76 67777888877777754 4778988766554 44 67777877766 33444 6778999999999999887
Q ss_pred EeCC----CcEEEEecCcce
Q psy3053 896 GNLV----GAPKLYATEFYL 911 (917)
Q Consensus 896 gs~D----G~V~IWdl~~~l 911 (917)
++.+ +.|++||+++..
T Consensus 418 ~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCCcEEEEEECCCCe
Confidence 6544 569999998765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-22 Score=234.92 Aligned_cols=272 Identities=11% Similarity=0.087 Sum_probs=221.5
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC--CCCCCCccCCccee
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT--GASWSHMKPSKSLV 707 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl--~~~~~~~~~~~~~~ 707 (917)
++|++..+++++.|++|.+||..+++++.++..+.. +.+++|+|++++|++++.|++|.+||+ .++ ...
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------TKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------EEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--------cEE
Confidence 678888999999999999999999999999884433 889999999999999999999999999 443 223
Q ss_pred eeccCCCceEEEEEeC----CCCEEEEEEC-CCeEEEEECCCCeeeEEecCC---------C-CCCeEEEEEecCCCE-E
Q psy3053 708 SQLDLDNRIKCLAISK----DNNQLAVGTE-AGELIIWSLENHLMTQQLSDD---------I-NASVNGVLFSEDGCR-V 771 (917)
Q Consensus 708 ~~~~h~~~V~~l~~sp----dg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~---------h-~~~V~~v~fspdg~~-L 771 (917)
....+...+..++|+| +|+++++++. +++|.+||..+++.+..+... | ...+.++.++|++.. +
T Consensus 216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 3334566789999999 9999998884 899999999999988887621 1 237899999997665 5
Q ss_pred EEEeCCCeEEEEECCCCeEEE--EeecCCceEEEEEeCCCE-EEEE-eCCCeEEEEECCCCEEEEEEec----CCCceEE
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVC--NKVFEEKLLCLSWAGEEK-VILG-GALGMVYLVDLIQVQLLKQVRA----HKDAVLS 843 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~--~~~~~~~i~~l~~s~~~~-lv~g-s~dG~I~vwdl~~~~~i~~l~~----h~~~V~s 843 (917)
++...++.|.+||..+++.+. .......+..++|+|++. ++++ ..+++|.+||..+++++..+.. |.+....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 566678999999998764332 455566688899999876 4444 4579999999999999988874 6544444
Q ss_pred E-eec-CCEEEEEe-CCCeEEEEECcC-------CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-------CCCcEEEEe
Q psy3053 844 L-HFD-NCTMLVGC-WDSCVVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGN-------LVGAPKLYA 906 (917)
Q Consensus 844 i-s~d-g~~Lasgs-~DG~I~Iwdl~t-------g~~l~~l~~h~~~V~slafSpdg~~LaSgs-------~DG~V~IWd 906 (917)
+ +++ +..++++. .|++|.+||+.+ +++++++.+|.+.+..++++|+|++|++++ .+++|.|||
T Consensus 376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 4 666 55666665 689999999998 899999999998899999999999999987 378999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
+++.
T Consensus 456 ~~~~ 459 (543)
T 1nir_A 456 LKNL 459 (543)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 9843
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=249.50 Aligned_cols=337 Identities=11% Similarity=0.020 Sum_probs=256.4
Q ss_pred ccccCCccccceeeeccCCcce-------EEEEEeCCCcEEEEEecC------CceEEEeccCCceee------------
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAI-------TAVAICGEGISVASVGRD------AMLKIHSLKTGRQER------------ 616 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~V-------tsv~fSpdg~~Lasgs~D------g~I~IWd~~t~~~~~------------ 616 (917)
.+|+...+ ....+..|...+ .+++|||||+.+++++.+ ..|.+|++.+++...
T Consensus 83 ~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~s 160 (1045)
T 1k32_A 83 YFYNGENG--EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFA 160 (1045)
T ss_dssp EEEETTTT--EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEE
T ss_pred EEEECCCC--CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeC
Confidence 35664433 256778899888 999999999977777754 347777776554321
Q ss_pred -------------------------------------eeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeE
Q psy3053 617 -------------------------------------SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVT 658 (917)
Q Consensus 617 -------------------------------------~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~ 658 (917)
.+..|...+.++.|+++ .++++++.|+.+.+|.++. +....
T Consensus 161 pG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~ 239 (1045)
T 1k32_A 161 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR 239 (1045)
T ss_dssp TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE
T ss_pred CCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce
Confidence 11234556777888887 6667778889999998764 44556
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC---cceeeeccCCCceEEEEEe-CCCCEEEEEECC
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS---KSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEA 734 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~d 734 (917)
.+..|. .+.+.+|+|+|+.|++++ ++.|.+||+.......... ........+...+.+++|+ |+|+.+++++ +
T Consensus 240 ~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~ 316 (1045)
T 1k32_A 240 KHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R 316 (1045)
T ss_dssp ECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T
T ss_pred EecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-c
Confidence 666665 467789999999998875 8999999984321000000 0000011234578999999 9999999888 7
Q ss_pred CeEEEEECCCCeeeEEecCCCCC-CeEEEEEecCCCEEEEEeCCCeEE-EEECCCCeEEEEeecCCceEEEEEeCCCE-E
Q psy3053 735 GELIIWSLENHLMTQQLSDDINA-SVNGVLFSEDGCRVLSCGNNCMLN-VYDLTTGMQVCNKVFEEKLLCLSWAGEEK-V 811 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~-~V~~v~fspdg~~L~s~s~Dg~I~-iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-l 811 (917)
+.+.+|++.++.... +. .+.. .+.+++|+ ||+.+++++.++.+. +||+.+++......+...+.+++|+|++. +
T Consensus 317 ~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLK-VP-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp TEEEEECTTSSBEEE-CS-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred CEEEEEcCCCCceEE-cc-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEE
Confidence 899999998876544 44 4556 89999999 999999999888898 99998887655444557799999999875 6
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCC----------eEEEEECcCCeEEEEecCCCC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDS----------CVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG----------~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
++++.++.|++||+.+++......+|...+.++ +|||++|++++.++ .|++||+.+++ +..+..|..
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~ 472 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS 472 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence 778889999999999999888877888777665 77999998887654 89999999888 677888888
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.+++|+|||++|++++.++...+|+..
T Consensus 473 ~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp BEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 89999999999999999999988888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=249.02 Aligned_cols=307 Identities=10% Similarity=0.013 Sum_probs=223.8
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecccc---ceEEEEEeCCCCEEEEEecc---------cEEEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM---TLSSLCILPDNCTMLVGCWD---------SCVVIY 649 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~---~V~sl~~spd~~~Lasgs~D---------g~I~Iw 649 (917)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. .+.+++|+|||++|++++.+ +.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988777766654 48999999999999999764 789999
Q ss_pred EeccCeee--EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC-------------
Q psy3053 650 DVECGRIV--TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN------------- 714 (917)
Q Consensus 650 dl~tg~~i--~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~------------- 714 (917)
|+.+++.. ....+|...+.+++|+|||+.|++++. +.|.+||+.++.. ......+..
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-------~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-------IRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-------EEEECCCBTTTEEEEECCHHHH
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-------EEEecCCCCCceECcccceeEE
Confidence 99988762 222345556899999999999999886 7999999977521 111111111
Q ss_pred -----ceEEEEEeCCCCEEEEEECCC----------------------------------eEEEEECCCCeeeEEecCC-
Q psy3053 715 -----RIKCLAISKDNNQLAVGTEAG----------------------------------ELIIWSLENHLMTQQLSDD- 754 (917)
Q Consensus 715 -----~V~~l~~spdg~~Lasgs~dG----------------------------------~I~iwDl~~~~~~~~l~~~- 754 (917)
.+.+++|+|||+.|++++.++ .|.+||+.+++....+...
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 347899999999999987543 7999999988865666522
Q ss_pred ----CCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCeEEEEee--cCCce----EEEEEeCCCE-EE-E-EeCC
Q psy3053 755 ----INASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGMQVCNKV--FEEKL----LCLSWAGEEK-VI-L-GGAL 817 (917)
Q Consensus 755 ----h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~~i~~~~--~~~~i----~~l~~s~~~~-lv-~-gs~d 817 (917)
+...+.+++|+|||+.+++.+. +..|.+||+.+++...... ....+ ..++|+|++. ++ + +..+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 2567899999999998877653 3579999999987665432 22322 3778998876 33 2 4566
Q ss_pred C------eEEEEE-CCCCE--EEEEEecCCCceE---EEeecCCEEEEEeCC---CeEEEEECcCCe--EEEEecC---C
Q psy3053 818 G------MVYLVD-LIQVQ--LLKQVRAHKDAVL---SLHFDNCTMLVGCWD---SCVVIYDVECGR--IVTELAG---H 877 (917)
Q Consensus 818 G------~I~vwd-l~~~~--~i~~l~~h~~~V~---sis~dg~~Lasgs~D---G~I~Iwdl~tg~--~l~~l~~---h 877 (917)
| .|++|| ..++. ....+..+...+. ++++||+.|+..+.+ +.+++|++.... ....+.. |
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 408 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE 408 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC
Confidence 6 577788 34443 1444443333333 458899998766655 789999986432 3334443 6
Q ss_pred CCCEEEEEEcCCCCEEEEEe
Q psy3053 878 EDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs 897 (917)
...+..++|+|||++|+...
T Consensus 409 ~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 409 NCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SCCCCEEEECTTSSEEEEEC
T ss_pred CCCeEEEEECCCCCEEEEEc
Confidence 67789999999999888653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=207.68 Aligned_cols=280 Identities=9% Similarity=0.061 Sum_probs=207.8
Q ss_pred EEeCCCcE-EEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-ccEEEEEEeccCee-eEEeccC
Q psy3053 587 AICGEGIS-VASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVECGRI-VTELAGH 663 (917)
Q Consensus 587 ~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg~~-i~~l~~H 663 (917)
.|.++++. +++++.++.|.+||..+++....+..+.... +++|+|+++.+++++. ++.|.+||..+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45565554 6677789999999999999888877766666 9999999997776665 89999999999987 7777777
Q ss_pred CCceeEEEecCCCCEEEEEECCC---eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE-EECCCe-EE
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDC---TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV-GTEAGE-LI 738 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~Dg---tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las-gs~dG~-I~ 738 (917)
..+..+++|+|++++++++..++ .|.+||+.++ ...........+.+++|+|+|+.+++ +..++. +.
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--------KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--------EEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--------CeEEEEECCCCccceEECCCCCEEEEEecCCCceEE
Confidence 77776699999999999655553 8999999776 22333344566799999999985554 455588 99
Q ss_pred EEECCCCeee----EEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeE---EEEeecCCceEEEEEeCCCE
Q psy3053 739 IWSLENHLMT----QQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQ---VCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 739 iwDl~~~~~~----~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~---i~~~~~~~~i~~l~~s~~~~ 810 (917)
+|++.....+ .... .....+.+++|+|+|+++++++ .++.|.+||+.+++. +........+.+++++|++.
T Consensus 155 ~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS 233 (331)
T ss_dssp EEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred EEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence 9998754332 1111 3445689999999999766555 688999999998887 77777777888999999877
Q ss_pred -EEEEe-CCCeEEEEECCCCEE--EEEEecC----CCce-----EEEeecCCEEEEEeC-CCeEEEEECcCCeEEEEecC
Q psy3053 811 -VILGG-ALGMVYLVDLIQVQL--LKQVRAH----KDAV-----LSLHFDNCTMLVGCW-DSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 811 -lv~gs-~dG~I~vwdl~~~~~--i~~l~~h----~~~V-----~sis~dg~~Lasgs~-DG~I~Iwdl~tg~~l~~l~~ 876 (917)
+++++ .++.|.+||+.+++. +..+..+ .... .++++++++|++++. ++.|.+||+..... ..+.+
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~ 312 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV-GYVAG 312 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTT
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceec
Confidence 44443 468899999999887 4444432 2222 367899998866655 57999999986543 33433
Q ss_pred C
Q psy3053 877 H 877 (917)
Q Consensus 877 h 877 (917)
.
T Consensus 313 ~ 313 (331)
T 3u4y_A 313 I 313 (331)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-20 Score=202.66 Aligned_cols=270 Identities=12% Similarity=0.080 Sum_probs=209.3
Q ss_pred CcceEEEEEeCCCcEEEEEec-------CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEe
Q psy3053 580 KEAITAVAICGEGISVASVGR-------DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDV 651 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl 651 (917)
...+..++++|+|+.+++++. ++.|.+||..+++....+... ..+..++++|+++.++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456789999999999888874 568999999999888877654 346789999999966554 55799999999
Q ss_pred ccCeeeEEeccCCCc---------eeEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeecc-CCCceEEE
Q psy3053 652 ECGRIVTELAGHEDA---------ISCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLD-LDNRIKCL 719 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~---------Vt~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~~~V~~l 719 (917)
.+++.+..+..+... +.+++|+|+++.+++++ .++.|.+||..++ ....... +...+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI--------KLKTAIQNTGKMSTGL 190 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT--------EEEEEECCCCTTCCCC
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC--------ceEEEecCCCCccceE
Confidence 999988887765432 78999999999888776 4789999999765 2222223 55568899
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC---CCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCeEEEEee
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD---DINASVNGVLFSEDGCRVLSCGNN-CMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~D-g~I~iwDl~tg~~i~~~~ 795 (917)
+|+|+|+.+++++.++.|.+||+.+++....+.. ++...+.+++|+|+|+.+++++.+ +.|.+||..+++.+....
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 9999999999999999999999999988877663 245567889999999977776654 788888887765443221
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe-CCCeEEEEECcCCeEEEEe
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC-WDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs-~DG~I~Iwdl~tg~~l~~l 874 (917)
.....-.+++++++.+++++ .++.|.+||..+++.+..+
T Consensus 271 ----------------------------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 271 ----------------------------------------APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp ----------------------------------------CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ----------------------------------------cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 11122245577888665555 6899999999999998888
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCC
Q psy3053 875 AGHEDAISCVAWDEKRKRLISGNLV 899 (917)
Q Consensus 875 ~~h~~~V~slafSpdg~~LaSgs~D 899 (917)
..+ ..+.+++|+|+|++|+++..+
T Consensus 311 ~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 311 DTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred ecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 754 467999999999988776655
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-20 Score=204.08 Aligned_cols=277 Identities=10% Similarity=0.074 Sum_probs=202.4
Q ss_pred EEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcce
Q psy3053 629 CILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSL 706 (917)
Q Consensus 629 ~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~ 706 (917)
.|.+++. .+++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..++.. ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~------~~ 76 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP------KV 76 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC------EE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce------eE
Confidence 3555544 46777889999999999999988887777777 9999999997777666 89999999987621 02
Q ss_pred eeeccCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCe-EE
Q psy3053 707 VSQLDLDNRIKCLAISKDNNQLAVGTEAG---ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCM-LN 781 (917)
Q Consensus 707 ~~~~~h~~~V~~l~~spdg~~Lasgs~dG---~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~-I~ 781 (917)
.....+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+. ......+++|+|+|++++++ ..++. +.
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEE
Confidence 22333444444499999999999655553 89999999999888776 34567999999999866555 55578 99
Q ss_pred EEECCCCeEE-----EEeecCCceEEEEEeCCCE-EEE-EeCCCeEEEEECCCCEE---EEEEecCCCc-eEEEeecCCE
Q psy3053 782 VYDLTTGMQV-----CNKVFEEKLLCLSWAGEEK-VIL-GGALGMVYLVDLIQVQL---LKQVRAHKDA-VLSLHFDNCT 850 (917)
Q Consensus 782 iwDl~tg~~i-----~~~~~~~~i~~l~~s~~~~-lv~-gs~dG~I~vwdl~~~~~---i~~l~~h~~~-V~sis~dg~~ 850 (917)
+|++.....+ ..........++++++++. +++ +..++.|.+||+.+++. +..+..+... -.+++|+|++
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGST 234 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCE
Confidence 9998754322 2223445688999999875 444 44689999999998887 7777654322 2345889997
Q ss_pred EEEEe-CCCeEEEEECcCCeE--EEEecCC----CC---CEEEEEEcCCCCEEEEEe-CCCcEEEEecCcceEEE
Q psy3053 851 MLVGC-WDSCVVIYDVECGRI--VTELAGH----ED---AISCVAWDEKRKRLISGN-LVGAPKLYATEFYLLYV 914 (917)
Q Consensus 851 Lasgs-~DG~I~Iwdl~tg~~--l~~l~~h----~~---~V~slafSpdg~~LaSgs-~DG~V~IWdl~~~ll~~ 914 (917)
+++++ .++.|.+||..+++. +..+..+ .. ...+++|+|||++|++++ .++.|.+|+++...+..
T Consensus 235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 76665 578899999999887 4444322 22 235689999999887655 56799999998776543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-20 Score=202.06 Aligned_cols=289 Identities=12% Similarity=0.151 Sum_probs=201.1
Q ss_pred EEEEecCCceEEEecc-CCce-eeeeeccccceEEEEEeCCCCEEEEEecc-cEEEEEEec--cCee--eEEeccCCCce
Q psy3053 595 VASVGRDAMLKIHSLK-TGRQ-ERSAVLSSMTLSSLCILPDNCTMLVGCWD-SCVVIYDVE--CGRI--VTELAGHEDAI 667 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~-t~~~-~~~~~~~~~~V~sl~~spd~~~Lasgs~D-g~I~Iwdl~--tg~~--i~~l~~H~~~V 667 (917)
+++++.|+.|.+|++. ++.. ......+...+.+++|+|+++.+++++.+ +.|.+|+++ +++. +..+..+. .+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence 4444779999999995 3322 12223356678899999999999988886 999999998 5553 34454444 78
Q ss_pred eEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCC-
Q psy3053 668 SCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLEN- 744 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~- 744 (917)
.+++|+|++++|++++. ++.|.+||+..+. .............+.+++|+|+++.+++++ .++.|.+||+.+
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGL-----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTE-----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCc-----cccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 99999999998877765 8899999985220 112222334455689999999999888887 899999999987
Q ss_pred CeeeE----EecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC--CeE--EEEee-c------CCceEEEEEeCC
Q psy3053 745 HLMTQ----QLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTT--GMQ--VCNKV-F------EEKLLCLSWAGE 808 (917)
Q Consensus 745 ~~~~~----~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~t--g~~--i~~~~-~------~~~i~~l~~s~~ 808 (917)
++... .........+.+++|+|+|+.+++++ .++.+.+|++.. +.. ..... . ...+.+++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 64432 22323456788999999999776655 789999999953 432 22221 1 124668999988
Q ss_pred C-EEE-EEeCCCeEEEEECC----CCEEEEEEecCCCceEE--EeecCCEEEEEe-CCCeEEEEEC--cCCeE--EEEec
Q psy3053 809 E-KVI-LGGALGMVYLVDLI----QVQLLKQVRAHKDAVLS--LHFDNCTMLVGC-WDSCVVIYDV--ECGRI--VTELA 875 (917)
Q Consensus 809 ~-~lv-~gs~dG~I~vwdl~----~~~~i~~l~~h~~~V~s--is~dg~~Lasgs-~DG~I~Iwdl--~tg~~--l~~l~ 875 (917)
+ .++ ++..++.|.+||+. ..+.+..+..+.. +.+ ++++|++|++++ .++.|.+|++ .+++. +..+.
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 7 454 44478999999998 3455555655444 444 477899888887 6899999954 46643 44444
Q ss_pred CCCCCEEEEEEcCCCC
Q psy3053 876 GHEDAISCVAWDEKRK 891 (917)
Q Consensus 876 ~h~~~V~slafSpdg~ 891 (917)
.. ....+++|.|+.+
T Consensus 321 ~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 VG-QGPMWVVVNAHEG 335 (343)
T ss_dssp CS-SSCCEEEEEEEC-
T ss_pred cC-CCCeeEEEEcccC
Confidence 32 3456777777543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-21 Score=232.66 Aligned_cols=277 Identities=14% Similarity=0.095 Sum_probs=214.2
Q ss_pred ccceEEEEEeCCCCEEEEEec-cc-----EEEEEEeccCeeeEEeccCCC------------------------ceeEEE
Q psy3053 622 SMTLSSLCILPDNCTMLVGCW-DS-----CVVIYDVECGRIVTELAGHED------------------------AISCVA 671 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~-Dg-----~I~Iwdl~tg~~i~~l~~H~~------------------------~Vt~l~ 671 (917)
...+.+++|+|||+.|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 999999999988777765543 388999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe
Q psy3053 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL 751 (917)
Q Consensus 672 ~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l 751 (917)
|+|||++|++++. +.|.+||+.++.. ........+...+.+++|+|||+.|++++ ++.|++||+.+++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999999986 9999999976510 01223445667899999999999999987 468999999998766544
Q ss_pred cCCCCCC----------------eEEEEEecCCCEEEEEeCCC---------------------------------eEEE
Q psy3053 752 SDDINAS----------------VNGVLFSEDGCRVLSCGNNC---------------------------------MLNV 782 (917)
Q Consensus 752 ~~~h~~~----------------V~~v~fspdg~~L~s~s~Dg---------------------------------~I~i 782 (917)
. .+... +.+++|||||+.|++++.|+ .|.+
T Consensus 189 ~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 A-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp C-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred c-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4 23222 47899999999999988765 7899
Q ss_pred EECCC-CeEEEEe---ecCCceEEEEEeCCCE-EEEEe-----CCCeEEEEECCCCEEEEEEecCCC----c--eEEEee
Q psy3053 783 YDLTT-GMQVCNK---VFEEKLLCLSWAGEEK-VILGG-----ALGMVYLVDLIQVQLLKQVRAHKD----A--VLSLHF 846 (917)
Q Consensus 783 wDl~t-g~~i~~~---~~~~~i~~l~~s~~~~-lv~gs-----~dG~I~vwdl~~~~~i~~l~~h~~----~--V~sis~ 846 (917)
||+.+ ++..... .+...+.+++| +++. +++++ .++.|++||+.+++....+..+.. . -.++++
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 99988 7654433 24456888999 8765 44443 257899999999987777665543 1 234578
Q ss_pred cCCEEEEEeCCCeEEEEECc-CCeEEEEecCCCCCEEEE-EEcCCCCEEEE-EeCCC--cEEEEecC
Q psy3053 847 DNCTMLVGCWDSCVVIYDVE-CGRIVTELAGHEDAISCV-AWDEKRKRLIS-GNLVG--APKLYATE 908 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~-tg~~l~~l~~h~~~V~sl-afSpdg~~LaS-gs~DG--~V~IWdl~ 908 (917)
||+++++++.||.+++|.+. ++. ...+..|...|.++ +|+|+|+.|+. ++.++ .+++|+++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999999999988888765 455 77888888889887 59999998765 45555 89999985
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-20 Score=200.85 Aligned_cols=265 Identities=10% Similarity=0.078 Sum_probs=188.9
Q ss_pred EEEEEecccEEEEEEec-cCe--eeEEeccCCCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 636 TMLVGCWDSCVVIYDVE-CGR--IVTELAGHEDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~-tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
.+++++.|+.|++|+++ +++ .+.. ..|...+.+++|+|++++|++++.+ +.|.+|++...... ........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~ 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----LTFAAESA 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----EEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc----eeeccccc
Confidence 34445779999999996 342 2333 3477889999999999999999887 99999998722101 11112222
Q ss_pred CCCceEEEEEeCCCCEEEEEEC-CCeEEEEECC---CCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTE-AGELIIWSLE---NHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT 786 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~---~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~ 786 (917)
....+.+++|+|+++.+++++. ++.|.+||+. ..+....+. ....+.+++|+|+|+.+++++ .++.|.+||+.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 2347899999999998877665 8899999994 334444443 345688999999999888887 89999999998
Q ss_pred C-CeEEE----E--eecCCceEEEEEeCCCE-EEEE-eCCCeEEEEECCC--CEE--EEEEec----C--CCce--EEEe
Q psy3053 787 T-GMQVC----N--KVFEEKLLCLSWAGEEK-VILG-GALGMVYLVDLIQ--VQL--LKQVRA----H--KDAV--LSLH 845 (917)
Q Consensus 787 t-g~~i~----~--~~~~~~i~~l~~s~~~~-lv~g-s~dG~I~vwdl~~--~~~--i~~l~~----h--~~~V--~sis 845 (917)
+ ++... . ......+.+++|++++. ++++ ..++.|.+|++.. ++. ...... + ...+ .+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 7 65432 1 12345688899998875 5444 4789999999953 432 333321 1 1233 3447
Q ss_pred ecCCEEEEE-eCCCeEEEEECc--C--CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q psy3053 846 FDNCTMLVG-CWDSCVVIYDVE--C--GRIVTELAGHEDAISCVAWDEKRKRLISGN-LVGAPKLYATE 908 (917)
Q Consensus 846 ~dg~~Lasg-s~DG~I~Iwdl~--t--g~~l~~l~~h~~~V~slafSpdg~~LaSgs-~DG~V~IWdl~ 908 (917)
+++++++++ ..++.|.+|++. + .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|+++
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 789887754 478999999998 3 345555655544 88999999999998887 68999999665
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-20 Score=203.37 Aligned_cols=268 Identities=13% Similarity=0.052 Sum_probs=201.2
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCC--ceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeee-c
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHED--AISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQ-L 710 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~--~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~-~ 710 (917)
.++++++.++.|.+||+.+++.+..+..... .+.+++|+|+++.++ +++.++.|.+||+.++. ..... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEc
Confidence 4788999999999999999998887763322 588999999998765 55567899999997762 11111 1
Q ss_pred cC----CCceEEEEEeCCCCEEEEEE------------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 711 DL----DNRIKCLAISKDNNQLAVGT------------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 711 ~h----~~~V~~l~~spdg~~Lasgs------------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
++ ...+.+++|+|+|+.+++++ .++.|.+||+.+++....+. ....+.+++|+|+|+.++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe
Confidence 11 12577899999999998886 57999999999998887776 24567889999999988888
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEe-CCC-----------------------eEEEEECCCCE
Q psy3053 775 GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGG-ALG-----------------------MVYLVDLIQVQ 829 (917)
Q Consensus 775 s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG-----------------------~I~vwdl~~~~ 829 (917)
++.|.+||+.+++.............+.+++++. +++++ .++ .|.+||+.+++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6889999999998876655433111224555543 22222 122 57899999987
Q ss_pred EE-EEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 830 LL-KQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 830 ~i-~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
.. ..+..+...+.++ ++++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 64 2334455566555 7799998888 799999999999988887643 4678999999999999999999999999
Q ss_pred cCc-ceEEEEe
Q psy3053 907 TEF-YLLYVLT 916 (917)
Q Consensus 907 l~~-~ll~~Lt 916 (917)
+++ ..+..+.
T Consensus 308 ~~~~~~~~~~~ 318 (337)
T 1pby_B 308 AETLEKKGQVD 318 (337)
T ss_dssp TTTCCEEEEEE
T ss_pred CcCCcEEEEEE
Confidence 975 4555543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-20 Score=200.00 Aligned_cols=272 Identities=14% Similarity=0.091 Sum_probs=208.2
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeecccc--ceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEecc-C----C
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAG-H----E 664 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~--~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~-H----~ 664 (917)
+++++++.++.|.+||..+++.+..+..... .+.+++|+|+++.++ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988877764432 478899999998664 555688999999999988776653 2 2
Q ss_pred CceeEEEecCCCCEEEEEE------------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 665 DAISCVAWDEKRKRLISGS------------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs------------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
..+.+++|+|+++++++++ .++.|.+||+.++ ...........+.+++|+|+|+.++++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--------SRRKAFEAPRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--------EEEEEEECCSSCCCEEECTTSSCEEEE-
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--------cEEEEEeCCCCcceeEECCCCCEEEEe-
Confidence 2678899999999999886 5799999999765 222223335567889999999988887
Q ss_pred CCCeEEEEECCCCeeeEEecCCC-CCCeEEEEEecCCCEEEEEeCCC------------------------eEEEEECCC
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDI-NASVNGVLFSEDGCRVLSCGNNC------------------------MLNVYDLTT 787 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h-~~~V~~v~fspdg~~L~s~s~Dg------------------------~I~iwDl~t 787 (917)
++.|.+||+.+++....+.... .. .+.|+|+|+.++.++.++ .|.+||+.+
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred -CCeEEEEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 6899999999998887776332 12 237899988776554332 478999999
Q ss_pred CeEEE--EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC-ceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 788 GMQVC--NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD-AVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 788 g~~i~--~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
++... .......+.++++++++..+..+ ++.|.+||+.+++.+..+..+.. .-.+++++|+++++++.++.|.+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 87651 12234567889999987655444 79999999999998888764332 2233477899999999999999999
Q ss_pred CcCCeEEEEecCCC
Q psy3053 865 VECGRIVTELAGHE 878 (917)
Q Consensus 865 l~tg~~l~~l~~h~ 878 (917)
+.+++.+..+..+.
T Consensus 308 ~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 308 AETLEKKGQVDLPG 321 (337)
T ss_dssp TTTCCEEEEEECGG
T ss_pred CcCCcEEEEEEcCC
Confidence 99999988886553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=198.32 Aligned_cols=250 Identities=10% Similarity=0.131 Sum_probs=190.7
Q ss_pred EEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC-CCCCccCCcceeeeccC-CCce
Q psy3053 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA-SWSHMKPSKSLVSQLDL-DNRI 716 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~-~~~~~~~~~~~~~~~~h-~~~V 716 (917)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ +. .......+ ...+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICN 87 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccc
Confidence 3467899999999988866 4556899999999999999999987 88999999987 52 11112222 4678
Q ss_pred EEEEEeCCCCEEEEEEC--C--CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEC--CCCe
Q psy3053 717 KCLAISKDNNQLAVGTE--A--GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL-SCGNNCMLNVYDL--TTGM 789 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~--d--G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~-s~s~Dg~I~iwDl--~tg~ 789 (917)
.+++|+|+++.+++++. + ..|..+++.++. ...+. ....+..++|+|+|+.++ +++.++.+.+|++ .++.
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 89999999999999983 3 445555656555 34443 233589999999999887 7778998899884 5565
Q ss_pred EEEEeecCCceEEEEEeCCCE-EEEEe-CCCeEEEEECC-CCEEEEEEecCCCceEEE--eecCCEEEEEeCC-------
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEK-VILGG-ALGMVYLVDLI-QVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWD------- 857 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~-~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~D------- 857 (917)
......+...+.+++|++++. +++++ .++.+.+|++. .+.....+..|...+.++ +++|++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 555555667899999998875 44444 58899999886 555667777777777766 6799999888765
Q ss_pred ----CeEEEEECcCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 858 ----SCVVIYDVECGRI--VTELAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 858 ----G~I~Iwdl~tg~~--l~~l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
+.|.+||+.+++. +..+.+|...+.+++|+|+|+.|++++.|.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988765 445557888999999999999999887654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=220.54 Aligned_cols=293 Identities=12% Similarity=0.051 Sum_probs=206.0
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-----Ce
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-----GR 655 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-----g~ 655 (917)
..|.+++|||| +.++.+ .++.|.+||+.+++... +..+...+.+++|+|||+.|+++ .|+.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 555554 46999999998876544 34456678899999999999985 689999999998 87
Q ss_pred eeEEeccCCCc--------------eeEEEecCCCCEEEEEE---------------------------------CCCeE
Q psy3053 656 IVTELAGHEDA--------------ISCVAWDEKRKRLISGS---------------------------------WDCTV 688 (917)
Q Consensus 656 ~i~~l~~H~~~--------------Vt~l~~spd~~~L~Sgs---------------------------------~DgtI 688 (917)
.......+... +.+++|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 76655544443 48999999999999998 44789
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----eEEEEECCCCeeeEEec-CCCC---CCe
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-----ELIIWSLENHLMTQQLS-DDIN---ASV 759 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-----~I~iwDl~~~~~~~~l~-~~h~---~~V 759 (917)
.+||+.++... .......+...+.+++|+|+|+.|++++.++ .|.+||+.+++....+. ..+. ..+
T Consensus 238 ~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 238 GIYHLATGKTV-----YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEETTTTEEE-----ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred EEEECCCCceE-----eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 99999776210 1111124667799999999999999987775 89999999983333332 1122 234
Q ss_pred EEEEEec--CCCEEEEEeCCCeEEEEECC-CCeEEEEee-cCCceEE-EEEeCCCE-EEEE-eCCC----eEEEEECCCC
Q psy3053 760 NGVLFSE--DGCRVLSCGNNCMLNVYDLT-TGMQVCNKV-FEEKLLC-LSWAGEEK-VILG-GALG----MVYLVDLIQV 828 (917)
Q Consensus 760 ~~v~fsp--dg~~L~s~s~Dg~I~iwDl~-tg~~i~~~~-~~~~i~~-l~~s~~~~-lv~g-s~dG----~I~vwdl~~~ 828 (917)
.+++|+| ||+++++++.|+.+++|++. ++.....+. +...+.+ ++|++++. ++++ +.++ .|..||+.++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 6789999 99999999999999998875 555554443 3344665 79998763 4444 4444 7788888776
Q ss_pred EEEEEEecCCCceEEE--eecCCEEEEEeCC----CeEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 829 QLLKQVRAHKDAVLSL--HFDNCTMLVGCWD----SCVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 829 ~~i~~l~~h~~~V~si--s~dg~~Lasgs~D----G~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
+ ...+. +...+.++ ++||++++.++.+ +.|++||+.+++ ...+. +..++....+
T Consensus 393 ~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~ 452 (706)
T 2z3z_A 393 K-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM 452 (706)
T ss_dssp C-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred C-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence 5 33333 55566665 7789988776544 569999999887 33332 3334444444
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=229.74 Aligned_cols=276 Identities=13% Similarity=0.058 Sum_probs=204.3
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCC---ceeEEEecCCCCEEEEEECC---------CeEEEEe
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED---AISCVAWDEKRKRLISGSWD---------CTVRVWN 692 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~---~Vt~l~~spd~~~L~Sgs~D---------gtI~vWd 692 (917)
..+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|+|||++|++++.+ +.+.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 567889999997766 7899999999999998888887765 49999999999999999875 7888999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC---------------
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA--------------- 757 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~--------------- 757 (917)
+.++.. ..+.....+...+.+++|||||+.|++++. +.|++||+.+++...... .+..
T Consensus 98 ~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 98 IPHGDP-----QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp SSSCCC-----EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHT
T ss_pred CCCCce-----EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEE
Confidence 987621 111112234455889999999999999886 799999999987766554 2222
Q ss_pred ---CeEEEEEecCCCEEEEEeCCC----------------------------------eEEEEECCCCeEEEEeec----
Q psy3053 758 ---SVNGVLFSEDGCRVLSCGNNC----------------------------------MLNVYDLTTGMQVCNKVF---- 796 (917)
Q Consensus 758 ---~V~~v~fspdg~~L~s~s~Dg----------------------------------~I~iwDl~tg~~i~~~~~---- 796 (917)
.+.+++|||||+.|++++.|+ .|++||+.+++....+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 237899999999999887543 799999988875333332
Q ss_pred ---CCceEEEEEeCCCEEEE-EeC----CCeEEEEECCCCEEEEEEec-CCCc------eEEEeecCCEEEE--EeCCC-
Q psy3053 797 ---EEKLLCLSWAGEEKVIL-GGA----LGMVYLVDLIQVQLLKQVRA-HKDA------VLSLHFDNCTMLV--GCWDS- 858 (917)
Q Consensus 797 ---~~~i~~l~~s~~~~lv~-gs~----dG~I~vwdl~~~~~i~~l~~-h~~~------V~sis~dg~~Las--gs~DG- 858 (917)
...+.+++|+|++.+++ ... +..|++||+.+++....+.. +... -.+.+|||+.|+. +..+|
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 34588999999997664 322 35799999999987666543 3332 2345889997665 45667
Q ss_pred -----eEEEEE-CcCCe--EEEEecCCCCCEEE-EEEcCCCCEEEEEeCC---CcEEEEecC
Q psy3053 859 -----CVVIYD-VECGR--IVTELAGHEDAISC-VAWDEKRKRLISGNLV---GAPKLYATE 908 (917)
Q Consensus 859 -----~I~Iwd-l~tg~--~l~~l~~h~~~V~s-lafSpdg~~LaSgs~D---G~V~IWdl~ 908 (917)
.|.+|| ..++. +...+..+...+.. ++|+|||+.|+..+.+ +.+++|+++
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 566777 34444 14455544445554 6999999999876655 789999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=224.92 Aligned_cols=320 Identities=11% Similarity=0.026 Sum_probs=221.0
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecccc---ceEEEEEeCCCCEEEEEec---------ccEEEEEEec
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM---TLSSLCILPDNCTMLVGCW---------DSCVVIYDVE 652 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~---~V~sl~~spd~~~Lasgs~---------Dg~I~Iwdl~ 652 (917)
+++|+|+|++++ ++.|+.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 679999996555 45699999999999988776665544 4899999999999999876 7899999999
Q ss_pred cCeee--EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC--CcceeeeccCCC---------ceEEE
Q psy3053 653 CGRIV--TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP--SKSLVSQLDLDN---------RIKCL 719 (917)
Q Consensus 653 tg~~i--~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~--~~~~~~~~~h~~---------~V~~l 719 (917)
+++.+ ..+ ...+.+++|+|||+.|++++ |+.|++|++.++...... ........++.. ...++
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 98863 222 35689999999999999986 789999999776311000 000000111211 12589
Q ss_pred EEeCCCCEEEEEECCC----------------------------------eEEEEECCCCeee--EEec-----CCCCCC
Q psy3053 720 AISKDNNQLAVGTEAG----------------------------------ELIIWSLENHLMT--QQLS-----DDINAS 758 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG----------------------------------~I~iwDl~~~~~~--~~l~-----~~h~~~ 758 (917)
+|+|||+.|++++.|. .|.+||+.+++.. ..+. ..+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999987652 7889999987653 1221 146778
Q ss_pred eEEEEEecCCCEEEEEeCC----CeEEEEE----CCCCeEEEEe-----ecCCceE-----EEEEeCCCE--EE-EEeCC
Q psy3053 759 VNGVLFSEDGCRVLSCGNN----CMLNVYD----LTTGMQVCNK-----VFEEKLL-----CLSWAGEEK--VI-LGGAL 817 (917)
Q Consensus 759 V~~v~fspdg~~L~s~s~D----g~I~iwD----l~tg~~i~~~-----~~~~~i~-----~l~~s~~~~--lv-~gs~d 817 (917)
+.+++|+||++.+++.... ..|.+|| ..+++..... .+...+. ++.|++++. ++ ++..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999998776664432 2488899 7777654333 2333444 778998775 33 34445
Q ss_pred C--eEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCC-----CeEEEEECcC--Ce-EEEEec----CCCCCEE
Q psy3053 818 G--MVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWD-----SCVVIYDVEC--GR-IVTELA----GHEDAIS 882 (917)
Q Consensus 818 G--~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~D-----G~I~Iwdl~t--g~-~l~~l~----~h~~~V~ 882 (917)
| .|.+||+.+++ ...+..+...+..+ .++++.|+..+.+ +.+++|.+.. +. ....+. +|...+.
T Consensus 335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~ 413 (719)
T 1z68_A 335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYY 413 (719)
T ss_dssp SCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBE
T ss_pred CceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceE
Confidence 5 67778887766 44555555556554 2288877776654 7888998753 42 123333 2667788
Q ss_pred EEEEcCCCCEEEE-EeCC--CcEEEEecCcc
Q psy3053 883 CVAWDEKRKRLIS-GNLV--GAPKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~LaS-gs~D--G~V~IWdl~~~ 910 (917)
.+.|+|++++++. ++.+ ..+.+|++...
T Consensus 414 ~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 414 TASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 9999999987774 3333 46889988643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=190.44 Aligned_cols=250 Identities=10% Similarity=0.009 Sum_probs=186.2
Q ss_pred EecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeEEeccC-CCceeEEEecCC
Q psy3053 598 VGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGH-EDAISCVAWDEK 675 (917)
Q Consensus 598 gs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~~H-~~~Vt~l~~spd 675 (917)
++.|+.|++||+.+++.. .+..+...+.+++|+|+++++++++ ++.|++||+.+ ++......+| ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 457899999999988765 4555788899999999999999986 88999999999 8877776666 478899999999
Q ss_pred CCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE-EEECCCeEEEEEC--CCCeeeEE
Q psy3053 676 RKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA-VGTEAGELIIWSL--ENHLMTQQ 750 (917)
Q Consensus 676 ~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La-sgs~dG~I~iwDl--~~~~~~~~ 750 (917)
++.|++++ .++...+|.+..... ... .......+.+++|+|+++.++ +++.++.+.+|++ .++.. ..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~------~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~ 167 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGG------TPR-LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR 167 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCC------CCE-ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCC------ceE-EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE
Confidence 99999999 445566665432210 111 223334588999999999887 7788999999985 34433 44
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC-CCeEEEE-eecCCceEEEEEeCCCE-EEEEeCC---------
Q psy3053 751 LSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT-TGMQVCN-KVFEEKLLCLSWAGEEK-VILGGAL--------- 817 (917)
Q Consensus 751 l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~-tg~~i~~-~~~~~~i~~l~~s~~~~-lv~gs~d--------- 817 (917)
+. .+...+.+++|+|+|+.+++++ .++.+.+|++. .+..... ..+...+.+++|++++. +++++.+
T Consensus 168 ~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 168 LT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred cc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 44 5678899999999999888776 48889999875 3333333 33455688899998775 5555544
Q ss_pred --CeEEEEECCCCEE--EEEEecCCCceEEE--eecCCEEEEEeCCC
Q psy3053 818 --GMVYLVDLIQVQL--LKQVRAHKDAVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 818 --G~I~vwdl~~~~~--i~~l~~h~~~V~si--s~dg~~Lasgs~DG 858 (917)
+.|++||+.+++. +..+.+|...+.++ +|+++.|++++.+.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988754 44555777777766 67899988887654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-17 Score=185.01 Aligned_cols=271 Identities=11% Similarity=0.132 Sum_probs=181.2
Q ss_pred CCceEEEecc--CCceee-eeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEeccCe--eeEEeccCCCceeEEEe
Q psy3053 601 DAMLKIHSLK--TGRQER-SAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVECGR--IVTELAGHEDAISCVAW 672 (917)
Q Consensus 601 Dg~I~IWd~~--t~~~~~-~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~ 672 (917)
++.|.+|.++ +++... ....+......++|+||++ +++++. ++.|++|++.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 5567777765 444332 2233445677899999999 555554 6899999998776 34455567788999999
Q ss_pred cCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeec---------cCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q psy3053 673 DEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQL---------DLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 673 spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~---------~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl 742 (917)
+|++++|++++ .+++|.+|++...... ....... .....+.+++|+|+|++++++..++.|.+|++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGAL----TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCE----EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCe----eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 99999999888 7899999998643110 0111111 12235889999999996666667889999999
Q ss_pred C-CCeeeE--EecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC--CeEEEEeecCCceEEEEEeCCCEEEEEeC
Q psy3053 743 E-NHLMTQ--QLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTT--GMQVCNKVFEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 743 ~-~~~~~~--~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~t--g~~i~~~~~~~~i~~l~~s~~~~lv~gs~ 816 (917)
. +++... .........+..++|+|||++++++ ..++.+.+|++.. ++...... +...+.
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~-------- 234 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-------VKTIPA-------- 234 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-------EESSCT--------
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-------eeecCC--------
Confidence 8 554332 2222234467889999999966664 5678899998763 33211000 000000
Q ss_pred CCeEEEEECCCCEEEEEEecCCCceE--EEeecCCEE-EEEeCCCeEEEEECc---CCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 817 LGMVYLVDLIQVQLLKQVRAHKDAVL--SLHFDNCTM-LVGCWDSCVVIYDVE---CGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~~h~~~V~--sis~dg~~L-asgs~DG~I~Iwdl~---tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+ . .....+. +++|||++| +++..++.|.+|++. +.+.+..+..+...+.+++|+|||
T Consensus 235 -----------~-----~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 235 -----------D-----Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp -----------T-----C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred -----------C-----C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence 0 0 0011233 347788877 455568999999986 235566677677778999999999
Q ss_pred CEEEEEeCC-CcEEEEecC
Q psy3053 891 KRLISGNLV-GAPKLYATE 908 (917)
Q Consensus 891 ~~LaSgs~D-G~V~IWdl~ 908 (917)
++|++++.+ +.|.+|+++
T Consensus 298 ~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEEcCCCcEEEEEEe
Confidence 999888765 899999654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-18 Score=193.24 Aligned_cols=302 Identities=12% Similarity=0.088 Sum_probs=208.7
Q ss_pred ccCCccccceeeeccCCcceEE-----EEEeCCCcEEEEEec-CCc--eEEEeccCCceeeeeeccccceEEEEEeCCCC
Q psy3053 564 WCDKSILEPLHFCHSHKEAITA-----VAICGEGISVASVGR-DAM--LKIHSLKTGRQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 564 w~~~~~l~~~~~l~~H~~~Vts-----v~fSpdg~~Lasgs~-Dg~--I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
|-.......+..+..|...+.. .+|||||+.|+.++. +|. |.+||+.+++..+....+...+...+|+||++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 4333333455667777766666 899999999998887 674 77889888887776666666666778999999
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEe--cCCCCEEEEEE----------------------CCCeEEEE
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGS----------------------WDCTVRVW 691 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~--spd~~~L~Sgs----------------------~DgtI~vW 691 (917)
.|+.++.++.|++||+.+++.......+...+....| ++++..++... .++.|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 9999999999999999999887777767666654444 88999887432 44789999
Q ss_pred eCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEEEECC------CeEEEEECCCCeeeEEecCCCC-CCeEEEE
Q psy3053 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEA------GELIIWSLENHLMTQQLSDDIN-ASVNGVL 763 (917)
Q Consensus 692 dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h~-~~V~~v~ 763 (917)
|+.++ .......+...+..++|+| +|+.|+.+..+ ..|.++|+.++.. ..+..... ..+...+
T Consensus 174 d~~~g--------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 174 DLKTG--------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEF 244 (388)
T ss_dssp ETTTC--------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEE
T ss_pred ECCCC--------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccce
Confidence 98876 2233345566789999999 99999887764 3788888876544 33432222 3578899
Q ss_pred EecCCCEEEEEeC-CC----eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 764 FSEDGCRVLSCGN-NC----MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 764 fspdg~~L~s~s~-Dg----~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
|+|||+.|+..+. ++ .|++||+.+++......... .....++ ..
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~------------------------------~~ 293 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSN------------------------------YD 293 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEEC------------------------------TT
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeec------------------------------CC
Confidence 9999998866543 22 38889988776432111111 0000000 11
Q ss_pred CceEEEeecCCEEEEE---------eCCCeEEEEECcCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEe-
Q psy3053 839 DAVLSLHFDNCTMLVG---------CWDSCVVIYDVECGRIVTELAGHED-----------AISCVAWDEKRKRLISGN- 897 (917)
Q Consensus 839 ~~V~sis~dg~~Lasg---------s~DG~I~Iwdl~tg~~l~~l~~h~~-----------~V~slafSpdg~~LaSgs- 897 (917)
+. .++|||+.|+.. ..+..|++||+.+++.. .+..|.. .+.+++|+|||+.|+.++
T Consensus 294 ~~--~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 294 GS--LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp SS--EEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CC--eEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 11 357888776653 45678999999988763 4444554 578899999999888665
Q ss_pred CCCcEEEEecC
Q psy3053 898 LVGAPKLYATE 908 (917)
Q Consensus 898 ~DG~V~IWdl~ 908 (917)
.+|...+|.++
T Consensus 371 ~~g~~~l~~~~ 381 (388)
T 3pe7_A 371 VHGKPALYLAT 381 (388)
T ss_dssp TTSSCEEEEEE
T ss_pred CCCceeEEEEE
Confidence 57777777664
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=190.33 Aligned_cols=275 Identities=12% Similarity=0.116 Sum_probs=190.1
Q ss_pred EEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCc
Q psy3053 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 627 sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
.+++++++..+++++.++.|++||..+++.+..+..+. ..+..++|+|+++.++ +++.++.|.+||+.++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~------- 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK------- 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence 34577888899999999999999999999888877543 2578999999998665 45578999999997752
Q ss_pred ceeeec-cC-----CCceEEEEEeCCCCEEEEEECC------------CeEEEEECCCCee---eEEecCCCCCCeEEEE
Q psy3053 705 SLVSQL-DL-----DNRIKCLAISKDNNQLAVGTEA------------GELIIWSLENHLM---TQQLSDDINASVNGVL 763 (917)
Q Consensus 705 ~~~~~~-~h-----~~~V~~l~~spdg~~Lasgs~d------------G~I~iwDl~~~~~---~~~l~~~h~~~V~~v~ 763 (917)
...... .+ ...+.+++|+|+|+.+++++.+ +.|.+||+.+++. +.... +...+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~ 154 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMR 154 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCccccee
Confidence 111111 11 2237889999999999998865 8999999988543 33333 344688999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-------------------------ceEEEEEeCCCEEE--EEeC
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-------------------------KLLCLSWAGEEKVI--LGGA 816 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-------------------------~i~~l~~s~~~~lv--~gs~ 816 (917)
|+|+|+ +++++. .|.+||..+++......... ...++++.+++... ....
T Consensus 155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 666543 49999999998776655432 23334444322100 0000
Q ss_pred CCeEEEEECCCCEEE-EEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCE
Q psy3053 817 LGMVYLVDLIQVQLL-KQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR 892 (917)
Q Consensus 817 dG~I~vwdl~~~~~i-~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~ 892 (917)
...+..++..+++.. ..+..+...+.++ ++ ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSC
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCE
Confidence 011222344433321 1112234444444 78 99999888 889999999999988887643 45678999999999
Q ss_pred EEEEeCCCcEEEEecCcc-eEEEEe
Q psy3053 893 LISGNLVGAPKLYATEFY-LLYVLT 916 (917)
Q Consensus 893 LaSgs~DG~V~IWdl~~~-ll~~Lt 916 (917)
|++++.++.|.+||++.. .+..+.
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCeEEEEeccccceeeeee
Confidence 999999999999999754 555553
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-19 Score=209.07 Aligned_cols=269 Identities=11% Similarity=0.015 Sum_probs=201.3
Q ss_pred cccceEEEEEeCCCCEEEEEec-ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC---CCeEEEEeCCC-
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW---DCTVRVWNTGA- 695 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~- 695 (917)
...+|.+++++|||+.||+++. ||++.||++++++..+....+...+.+++|+|| +.+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999777665544434368999999999 77887775 45566765543
Q ss_pred -CCCCccCCcceeeeccCCCceEEEEEeCCCCE-EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 696 -SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ-LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 696 -~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
... .. .. .....+...+|+|+|+. +++++.++.+.+||+.+++...... .+ . .+++|||||+.+++
T Consensus 99 ~~g~------~~-~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~-~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 99 RPGE------EQ-RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LP-G--FGFVSDIRGDLIAG 166 (582)
T ss_dssp STTC------CE-EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ES-S--CEEEEEEETTEEEE
T ss_pred CCCc------cc-cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CC-C--ceEEECCCCCEEEE
Confidence 210 11 11 12223456788888853 3444445556699999987665544 22 2 78999999999998
Q ss_pred EeCC----CeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCC--eEEEEECCCCEEEEEEecCCCceE--E-
Q psy3053 774 CGNN----CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALG--MVYLVDLIQVQLLKQVRAHKDAVL--S- 843 (917)
Q Consensus 774 ~s~D----g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG--~I~vwdl~~~~~i~~l~~h~~~V~--s- 843 (917)
++.+ +.|++||+.+++......+...+..++|+|+|. ++++..+| .|++||+.+++.. .+.+|...+. .
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 8877 789999999888765556667789999999886 44556677 8999999998887 6666765443 2
Q ss_pred -------EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc---EEEEecCc
Q psy3053 844 -------LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGA---PKLYATEF 909 (917)
Q Consensus 844 -------is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~---V~IWdl~~ 909 (917)
++|||.++++++.||.+++|++ |+... .+.+.|.+++|+ +++.+++++.+.+ +.+|+.++
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 6789989999999999999999 76654 345679999999 9999999887744 67777665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=189.18 Aligned_cols=285 Identities=13% Similarity=0.067 Sum_probs=198.7
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEec
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
+++++++++.++++++.++.|.+||..+++....+..+. ..+..++|+|+++.++ ++..++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788899999999999999999999998887776543 2567899999998665 45568999999999998887776
Q ss_pred cCC------CceeEEEecCCCCEEEEEECC------------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 662 GHE------DAISCVAWDEKRKRLISGSWD------------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 662 ~H~------~~Vt~l~~spd~~~L~Sgs~D------------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
.+. ..+.+++|+|+|+++++++.+ +.|.+||+.++.. ........+...+.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEEECCSSCCCEEECT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-----cceeeeccCCCcccceeECC
Confidence 332 337899999999999998866 9999999876411 01111223445688999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC-----------------------CeEEEEEecCCCEEEEEeCC-Ce
Q psy3053 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA-----------------------SVNGVLFSEDGCRVLSCGNN-CM 779 (917)
Q Consensus 724 dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~-----------------------~V~~v~fspdg~~L~s~s~D-g~ 779 (917)
+|+ +++++ +.|.+||+.+++....+...... ....+++++++......... ..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 34999999999887776522100 33456666554221110001 11
Q ss_pred EEEEECCCCeEEE--EeecCCceEEEEEeC-CCEEEEEeCCCeEEEEECCCCEEEEEEecCC-CceEEEeecCCEEEEEe
Q psy3053 780 LNVYDLTTGMQVC--NKVFEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNCTMLVGC 855 (917)
Q Consensus 780 I~iwDl~tg~~i~--~~~~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~~Lasgs 855 (917)
+..+|..+++... .......+.++++++ ++..+..+ ++.|.+||+.+++.+..+.... ..-.+++++++.|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec
Confidence 2224544443221 112445678899998 77655544 8999999999999888776432 22334477898888888
Q ss_pred CCCeEEEEECcCCeEEEEecCC
Q psy3053 856 WDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.++.|.+||+.+++.+..+...
T Consensus 314 ~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp BSSEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEeccccceeeeeecC
Confidence 8999999999999998887654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-19 Score=209.14 Aligned_cols=267 Identities=9% Similarity=-0.043 Sum_probs=191.2
Q ss_pred CCcceEEEEEeCCCcEEEEEec-CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEecc-
Q psy3053 579 HKEAITAVAICGEGISVASVGR-DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVEC- 653 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~t- 653 (917)
+..+|.+++|+|||+.||+++. ||+++||++.+++..+....+...+.+++|+|| +.+++++. +....+|.++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999766554433333367899999999 77777765 45566666543
Q ss_pred --CeeeEEeccCCCceeEEEecCCCC--EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 654 --GRIVTELAGHEDAISCVAWDEKRK--RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 654 --g~~i~~l~~H~~~Vt~l~~spd~~--~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
+... .+..+. .+...+|+|+++ .+++++. +.+.+||+.++ .......+.. .+++|+|||+.++
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g--------~~~~l~~~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGG--------GLRELARLPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETT--------EEEEEEEESS--CEEEEEEETTEEE
T ss_pred CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCC--------cEEEeecCCC--ceEEECCCCCEEE
Confidence 3322 343322 344668888875 3444444 44559998765 2222222222 7899999999999
Q ss_pred EEECC----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeEEEEeecCCceEEE
Q psy3053 730 VGTEA----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC--MLNVYDLTTGMQVCNKVFEEKLLCL 803 (917)
Q Consensus 730 sgs~d----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg--~I~iwDl~tg~~i~~~~~~~~i~~l 803 (917)
+++.+ +.|++||+.+++.. .+. .+.+.+..++|||||+.|+++..++ .|++||+.+++......+...+..+
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY 243 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHH
T ss_pred EEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhh
Confidence 88877 78999999988765 444 6778899999999999999888888 8999999998877222233444445
Q ss_pred E--------EeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCC---eEEEEECcC
Q psy3053 804 S--------WAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDS---CVVIYDVEC 867 (917)
Q Consensus 804 ~--------~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG---~I~Iwdl~t 867 (917)
+ |+|++. +++++.+|.+++|++ ++... ...+.+.++ + +++.+++++.+. .+.+|+..+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 5 998875 456778999999999 66554 334566666 5 888888888774 466666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=202.97 Aligned_cols=324 Identities=10% Similarity=0.006 Sum_probs=218.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccc-----eEEEEEeCCCCEEEEEecc---------cEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMT-----LSSLCILPDNCTMLVGCWD---------SCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~-----V~sl~~spd~~~Lasgs~D---------g~I~ 647 (917)
...+++|+|||++++++ ||.|++||+.+++....+..+... ..+.+|||||+.|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999988886 999999999999887766666432 2347899999999999876 5677
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC--cceeeeccCC---------Cce
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS--KSLVSQLDLD---------NRI 716 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~--~~~~~~~~h~---------~~V 716 (917)
+||+.+++.. .+..|.+.+...+|||||+.||.++ |+.|.+|++.++....... .......++. +..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 9999998865 4667888999999999999999885 7899999987763110000 0000011111 222
Q ss_pred EEEEEeCCCCEEEEEECCC------------------------------------eEEEEECCC---Ce--eeEEecC--
Q psy3053 717 KCLAISKDNNQLAVGTEAG------------------------------------ELIIWSLEN---HL--MTQQLSD-- 753 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~dG------------------------------------~I~iwDl~~---~~--~~~~l~~-- 753 (917)
..++|||||+.||.++.|. .|.+||+.+ +. ....+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 4589999999999875321 588899988 73 2233332
Q ss_pred ---CCCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCe----EE-----EEeecCCce-----EEEEEeCCCE-E
Q psy3053 754 ---DINASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGM----QV-----CNKVFEEKL-----LCLSWAGEEK-V 811 (917)
Q Consensus 754 ---~h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~----~i-----~~~~~~~~i-----~~l~~s~~~~-l 811 (917)
++...+..++|+|||+.++.... +..|.+||+.+++ +. ....+...+ ...+|+|++. +
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 26778999999999997665543 3479999998876 21 112223222 3678998875 3
Q ss_pred E-EEe-CC--CeEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCC-----CeEEEE--ECcCCeEEEEecC---
Q psy3053 812 I-LGG-AL--GMVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWD-----SCVVIY--DVECGRIVTELAG--- 876 (917)
Q Consensus 812 v-~gs-~d--G~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~D-----G~I~Iw--dl~tg~~l~~l~~--- 876 (917)
+ ..+ .+ ..|++||+.++... .+......+..+ .+|++.|+..+.. +...+| ++..+.....+..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~ 412 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELN 412 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred EEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccC
Confidence 3 443 33 46888898876554 344445555555 5777776655443 334454 5544443334442
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcc
Q psy3053 877 -HEDAISCVAWDEKRKRLISGNLV---GAPKLYATEFY 910 (917)
Q Consensus 877 -h~~~V~slafSpdg~~LaSgs~D---G~V~IWdl~~~ 910 (917)
....+....|||++++++..... ..+.+++..+.
T Consensus 413 ~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 23568899999999987755433 46778887643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-16 Score=176.95 Aligned_cols=293 Identities=10% Similarity=0.072 Sum_probs=196.0
Q ss_pred CCcEEEEEe----cCCceEEEecc--CCceeeeeeccccceEEEEEeCCCCEEEEEecc----cEEEEEEecc--Cee--
Q psy3053 591 EGISVASVG----RDAMLKIHSLK--TGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----SCVVIYDVEC--GRI-- 656 (917)
Q Consensus 591 dg~~Lasgs----~Dg~I~IWd~~--t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g~I~Iwdl~t--g~~-- 656 (917)
....++.|+ .++.|.+|.++ +++.......+......++|+||+++|++++.+ +.|.+|+++. ++.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 334555554 45688998774 454433322256667889999999999999886 7999999876 443
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeee--------ccCCCceEEEEEeCCCCE
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQ--------LDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~ 727 (917)
+.....+......+++ ++++|++++ .+++|.+|++........ ....... ..+...+.+++|+|+|+.
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP-ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS-CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc-cceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3344445566778888 778877776 578999999875421111 1111111 112334688999999997
Q ss_pred EEEEE-CCCeEEEEECCCCee------e------EEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q psy3053 728 LAVGT-EAGELIIWSLENHLM------T------QQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 728 Lasgs-~dG~I~iwDl~~~~~------~------~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~ 793 (917)
+++++ .++.|.+|++..... + ..........+.+++|+|+|+++++++ .++.|.+||+.++.....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 76655 478999998875431 1 122224556788999999999888777 689999999987755322
Q ss_pred --eec----CCceEEEEEeCCCE-EEEEeC--CCeEEEEECC--CCE--EEEEEecCCCceE--EEeecCCEEEEEe-CC
Q psy3053 794 --KVF----EEKLLCLSWAGEEK-VILGGA--LGMVYLVDLI--QVQ--LLKQVRAHKDAVL--SLHFDNCTMLVGC-WD 857 (917)
Q Consensus 794 --~~~----~~~i~~l~~s~~~~-lv~gs~--dG~I~vwdl~--~~~--~i~~l~~h~~~V~--sis~dg~~Lasgs-~D 857 (917)
... .....+++|+|++. ++++.. ++.|.+|++. +++ .+..+.. ...+. +++|+|++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 221 23467999999886 445554 4899999985 444 4445544 33344 4478999988887 67
Q ss_pred CeEEEEE--CcCCeEEEEe-cCCCCCEEEEEEc
Q psy3053 858 SCVVIYD--VECGRIVTEL-AGHEDAISCVAWD 887 (917)
Q Consensus 858 G~I~Iwd--l~tg~~l~~l-~~h~~~V~slafS 887 (917)
+.|.+|+ ..+++..... ..+...+.|++|.
T Consensus 328 ~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 328 NVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 8999965 4577765543 2244578888886
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=176.74 Aligned_cols=247 Identities=12% Similarity=0.044 Sum_probs=190.1
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEE-ecCCceEEEeccCCceeeeeeccccc---------eEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASV-GRDAMLKIHSLKTGRQERSAVLSSMT---------LSSLCIL 631 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~~~~~~~~---------V~sl~~s 631 (917)
.+|+..+. +....+.. ...+.+++++|+|+.++.+ ..++.|.+||..+++....+..+... +.+++|+
T Consensus 72 ~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 72 YRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp EEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred EEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC
Confidence 35554432 34444433 3457889999999966554 55799999999999988777664322 6789999
Q ss_pred CCCCEEEEEe--cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-
Q psy3053 632 PDNCTMLVGC--WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS- 708 (917)
Q Consensus 632 pd~~~Lasgs--~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~- 708 (917)
|+++.+++++ .++.|.+||..+++.+..+..+...+.+++|+|+++.+++++.++.|.+||..++... .....
T Consensus 150 ~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~ 225 (353)
T 3vgz_A 150 DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL----SRKKLL 225 (353)
T ss_dssp TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE----EEEECC
T ss_pred CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE----EEEEcC
Confidence 9999888776 4789999999999999888867777899999999999999999999999998876210 00000
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECC-CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT 786 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~d-G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~ 786 (917)
..++...+.+++|+|+++.+++++.+ +.|.+||+.+++.+..+..+. ..+++|+|+|+.+++++ .++.|.+||..
T Consensus 226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 11245568889999999987776654 999999999999888776322 25699999999766665 68999999999
Q ss_pred CCeEEEEeecCCceEEEEEeCCCE-EEEEeCC
Q psy3053 787 TGMQVCNKVFEEKLLCLSWAGEEK-VILGGAL 817 (917)
Q Consensus 787 tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~d 817 (917)
+++.+........+.++++++++. ++++..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 303 SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 999988888888899999998875 5555444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-18 Score=195.25 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=156.2
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCc----------eee-----eeeccccceEEEEEeCCCCEEE----EE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGR----------QER-----SAVLSSMTLSSLCILPDNCTML----VG 640 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~----------~~~-----~~~~~~~~V~sl~~spd~~~La----sg 640 (917)
...+..+++++++.++++++.|+ +++|+..... ... ....+...|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688999999999999999888 8898764211 000 0112345699999999999999 78
Q ss_pred ecccEEEEEEeccC--------e---eeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceee
Q psy3053 641 CWDSCVVIYDVECG--------R---IVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS 708 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg--------~---~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~ 708 (917)
+.|+.|++||+.++ + ....+.+|.+.|++++|+|+ +.+|++++.||+|++||++++ .....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-------~~~~~ 187 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-------VKVCA 187 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-------EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-------cceee
Confidence 88999999999765 1 24566789999999999997 889999999999999999765 22334
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC------CCCCCeEEEEEecCCCEEEEEe-CCC---
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD------DINASVNGVLFSEDGCRVLSCG-NNC--- 778 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~------~h~~~V~~v~fspdg~~L~s~s-~Dg--- 778 (917)
..+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.. .|...|.+++|++++.++++.+ .+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 45678899999999999999999999999999998 555544431 1233899999999987776543 443
Q ss_pred ---eEEEEECCCC
Q psy3053 779 ---MLNVYDLTTG 788 (917)
Q Consensus 779 ---~I~iwDl~tg 788 (917)
.+++|++.+.
T Consensus 267 ~~~~v~i~~l~~~ 279 (434)
T 2oit_A 267 TSPDVVMALLPKK 279 (434)
T ss_dssp SCCEEEEEECCCT
T ss_pred CCCceEEEEeccC
Confidence 3899999754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=177.26 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=170.5
Q ss_pred ccCCcceEEEEEeCCCcEEEEEec---CCceEEEeccCCce--eeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGR---DAMLKIHSLKTGRQ--ERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYD 650 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~--~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwd 650 (917)
..+...+..++|+|||+ |++++. ++.|.+|++.+++. +..+..+...+..++|+||+++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34557788899999999 665554 68999999987653 344445667788999999999888888 689999999
Q ss_pred ec-cCe--eeEEecc---------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-eccCCCceE
Q psy3053 651 VE-CGR--IVTELAG---------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIK 717 (917)
Q Consensus 651 l~-tg~--~i~~l~~---------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~ 717 (917)
+. ++. .+..+.. +...+.+++|+|+++.+++...++.|.+|++..... . ..... .......+.
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~-~---~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ-L---SEQSVLTMEAGFGPR 190 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC-E---EEEEEEECCTTCCEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc-E---EEeeeEEcCCCCCCc
Confidence 96 332 2333321 123488999999999666666788999999973210 0 01111 122344678
Q ss_pred EEEEeCCCCEEEE-EECCCeEEEEECCC--Cee--eEEecCCC-----CCCeEEEEEecCCCEEE-EEeCCCeEEEEECC
Q psy3053 718 CLAISKDNNQLAV-GTEAGELIIWSLEN--HLM--TQQLSDDI-----NASVNGVLFSEDGCRVL-SCGNNCMLNVYDLT 786 (917)
Q Consensus 718 ~l~~spdg~~Las-gs~dG~I~iwDl~~--~~~--~~~l~~~h-----~~~V~~v~fspdg~~L~-s~s~Dg~I~iwDl~ 786 (917)
.++|+|+|+++++ +..++.+.+|++.. ++. ...+.... ...+..++|+|||++|+ ++..++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996655 55678999999874 543 22222111 14588999999999875 55568999999986
Q ss_pred C-C--eEEEEeec-CCceEEEEEeCCCE-EEEEeC-CCeEEEE--ECCCCEEE
Q psy3053 787 T-G--MQVCNKVF-EEKLLCLSWAGEEK-VILGGA-LGMVYLV--DLIQVQLL 831 (917)
Q Consensus 787 t-g--~~i~~~~~-~~~i~~l~~s~~~~-lv~gs~-dG~I~vw--dl~~~~~i 831 (917)
. + ..+..... ...+.+++|+|++. +++++. ++.|.+| |..+++..
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 2 2 33333333 34577888888764 555554 4788888 44455543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-17 Score=198.49 Aligned_cols=301 Identities=14% Similarity=0.073 Sum_probs=207.1
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEE--ecCCceEEEeccCCceeeeeeccccceE---------EEEEe--CCCCE-EEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASV--GRDAMLKIHSLKTGRQERSAVLSSMTLS---------SLCIL--PDNCT-MLV 639 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasg--s~Dg~I~IWd~~t~~~~~~~~~~~~~V~---------sl~~s--pd~~~-Las 639 (917)
..+.+|...|..+++++++-.+++. +.++...||....+...+.+..+...+. ...|+ |||+. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999887666666 5588899999655555556666655555 56566 99998 776
Q ss_pred Eec-ccEEEEEEec--cCeeeEEecc-----CCCceeEEEecCCCCEEEEEECC----------CeEEEEeCCCCCCCcc
Q psy3053 640 GCW-DSCVVIYDVE--CGRIVTELAG-----HEDAISCVAWDEKRKRLISGSWD----------CTVRVWNTGASWSHMK 701 (917)
Q Consensus 640 gs~-Dg~I~Iwdl~--tg~~i~~l~~-----H~~~Vt~l~~spd~~~L~Sgs~D----------gtI~vWdl~~~~~~~~ 701 (917)
++. +..|+++++. ++.....+.. |...+.+++|+|||+.|++++.| ..|.+||+.+....
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA-- 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--
Confidence 654 5566666665 2033455555 67789999999999999999877 58999998762000
Q ss_pred CCcceeeec-cCCCceEEEEEeCCCCEEEEEECC--------CeEEEEECC-CC--eeeEEecCCCCCCeEEEEEecCCC
Q psy3053 702 PSKSLVSQL-DLDNRIKCLAISKDNNQLAVGTEA--------GELIIWSLE-NH--LMTQQLSDDINASVNGVLFSEDGC 769 (917)
Q Consensus 702 ~~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs~d--------G~I~iwDl~-~~--~~~~~l~~~h~~~V~~v~fspdg~ 769 (917)
......... .+...+..++|+|||+.|+.++.+ ..|.+||+. ++ .....+...+...+..++|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 000122233 445678889999999999987755 379999998 56 233344435578899999999999
Q ss_pred EEEEEeCCC--eEEEEECCCCeEEEEeecCCc---------eEEEEEeCCCEE-EEEeCCCeEEEE--ECCCCEEEEEEe
Q psy3053 770 RVLSCGNNC--MLNVYDLTTGMQVCNKVFEEK---------LLCLSWAGEEKV-ILGGALGMVYLV--DLIQVQLLKQVR 835 (917)
Q Consensus 770 ~L~s~s~Dg--~I~iwDl~tg~~i~~~~~~~~---------i~~l~~s~~~~l-v~gs~dG~I~vw--dl~~~~~i~~l~ 835 (917)
++++++.++ .|.+||+.+++.......... +.++++++++.+ ++++. +.+.+| |+.+++ +..+.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 877887788 677777767765543332221 456788766554 45555 888888 666665 67778
Q ss_pred cCCCceEEE-eecCCEEE--EEeCCC--eEEEEECcCCeEEEEecCCC
Q psy3053 836 AHKDAVLSL-HFDNCTML--VGCWDS--CVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 836 ~h~~~V~si-s~dg~~La--sgs~DG--~I~Iwdl~tg~~l~~l~~h~ 878 (917)
.|...+.++ +++++.++ +++.+. .|.++|+.+++.......|.
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCC
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCc
Confidence 888888888 88877544 334443 56666777777655444443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-17 Score=186.96 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=161.6
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe----------eeE-----EeccCCCc
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR----------IVT-----ELAGHEDA 666 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~----------~i~-----~l~~H~~~ 666 (917)
+.+++|+.... .....+..+++++++.++++|+.|+ +++|+..... ... ....|...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 45777764311 2234578899999999999999888 8898764210 010 11235678
Q ss_pred eeEEEecCCCCEEE----EEECCCeEEEEeCCCCCCC----ccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeE
Q psy3053 667 ISCVAWDEKRKRLI----SGSWDCTVRVWNTGASWSH----MKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGEL 737 (917)
Q Consensus 667 Vt~l~~spd~~~L~----Sgs~DgtI~vWdl~~~~~~----~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I 737 (917)
|++++|+|++++|+ +|+.|++|++||+.+.... ...........+|...|.+++|+|+ +.++++|+.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 7889999999998653100 0111123334568899999999998 7899999999999
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec--------CCceEEEEEeCCC
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--------EEKLLCLSWAGEE 809 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--------~~~i~~l~~s~~~ 809 (917)
++||++++....... +|...|.+++|+|+|++|++|+.||.|++||.+ ++....... ...+.+++|++++
T Consensus 175 ~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 999999987665555 678899999999999999999999999999998 544443321 1268999999887
Q ss_pred EEEEEe--CCC------eEEEEECCCC
Q psy3053 810 KVILGG--ALG------MVYLVDLIQV 828 (917)
Q Consensus 810 ~lv~gs--~dG------~I~vwdl~~~ 828 (917)
.++++. .+| .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 766433 332 3899999764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=209.24 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=197.2
Q ss_pred EEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCC---ceeEEEecCCCCEEEEEEC---------CCeEEEEeCC
Q psy3053 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED---AISCVAWDEKRKRLISGSW---------DCTVRVWNTG 694 (917)
Q Consensus 627 sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~---~Vt~l~~spd~~~L~Sgs~---------DgtI~vWdl~ 694 (917)
+++|+||++++++ +.|++|++||+.+++....+.+|.. .+.+++|||||++|++++. |++|.+||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965554 4699999999999998877776654 4899999999999999876 7899999998
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe---------------
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV--------------- 759 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V--------------- 759 (917)
++... ........+.+++|||||+.|+++. ++.|++||+.+++.......++...+
T Consensus 99 ~g~~~--------~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFV--------RGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEEC--------CSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred CCccc--------cceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 76210 0011124688999999999999986 78999999998877654433333322
Q ss_pred --EEEEEecCCCEEEEEeCCC----------------------------------eEEEEECCCCeEE--EEe-------
Q psy3053 760 --NGVLFSEDGCRVLSCGNNC----------------------------------MLNVYDLTTGMQV--CNK------- 794 (917)
Q Consensus 760 --~~v~fspdg~~L~s~s~Dg----------------------------------~I~iwDl~tg~~i--~~~------- 794 (917)
.+++|||||+.|++++.|. .|++||+.+++.. ...
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 4899999999999987652 7889999887642 111
Q ss_pred ecCCceEEEEEeCCCEEEEEeC-C----CeEEEEE----CCCCEEEEEE----ecCCCceE-------EEeecCCEEEE-
Q psy3053 795 VFEEKLLCLSWAGEEKVILGGA-L----GMVYLVD----LIQVQLLKQV----RAHKDAVL-------SLHFDNCTMLV- 853 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv~gs~-d----G~I~vwd----l~~~~~i~~l----~~h~~~V~-------sis~dg~~Las- 853 (917)
.+...+.+++|+|++.+++... . ..|.+|| +.+++....+ .+|...+. ..++||+.++.
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 1344688999999988765522 2 3588999 8777655444 35555443 45789986554
Q ss_pred -EeCCC--eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecC
Q psy3053 854 -GCWDS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV-----GAPKLYATE 908 (917)
Q Consensus 854 -gs~DG--~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D-----G~V~IWdl~ 908 (917)
+..+| .|.+||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.++
T Consensus 330 ~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 44555 57777877766 45566666678888888 88888877665 889999875
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-16 Score=173.48 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=183.3
Q ss_pred CCEEEEEe----cccEEEEEEec--cCeeeEEeccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCC
Q psy3053 634 NCTMLVGC----WDSCVVIYDVE--CGRIVTELAGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 634 ~~~Lasgs----~Dg~I~Iwdl~--tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~ 703 (917)
...+++|+ .++.|++|.++ +++.......+...+..++|+|++++|++++.+ +.|.+|++.......
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~--- 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL--- 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---
Confidence 34555664 35689999875 455433222277788899999999999999986 799999986531110
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEe----cC---------CCCCCeEEEEEecCCC
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQL----SD---------DINASVNGVLFSEDGC 769 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l----~~---------~h~~~V~~v~fspdg~ 769 (917)
........+...+..+++ +++.+++++ .++.+.+|++.....+... .. .+...+.+++|+|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 112222234556777777 788777766 5789999999754322211 10 1123458899999999
Q ss_pred EEEEEe-CCCeEEEEECCCCe-------E-------EEEeecCCceEEEEEeCCCE-EEEEe-CCCeEEEEECCCCEE--
Q psy3053 770 RVLSCG-NNCMLNVYDLTTGM-------Q-------VCNKVFEEKLLCLSWAGEEK-VILGG-ALGMVYLVDLIQVQL-- 830 (917)
Q Consensus 770 ~L~s~s-~Dg~I~iwDl~tg~-------~-------i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~~~~~-- 830 (917)
++++++ .++.+.+|++.... . .........+..++|+|++. +++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 776665 47899999886433 1 22233455688999999885 55555 589999999987754
Q ss_pred EEEEec---CCCceEEE--eecCCEEEEEeCC--CeEEEEECc--CCe--EEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q psy3053 831 LKQVRA---HKDAVLSL--HFDNCTMLVGCWD--SCVVIYDVE--CGR--IVTELAGHEDAISCVAWDEKRKRLISGN-L 898 (917)
Q Consensus 831 i~~l~~---h~~~V~si--s~dg~~Lasgs~D--G~I~Iwdl~--tg~--~l~~l~~h~~~V~slafSpdg~~LaSgs-~ 898 (917)
+..+.. +.....++ +|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence 333332 22334444 7899998776654 899999985 455 4445554 45678999999999998887 6
Q ss_pred CCcEEEEecC
Q psy3053 899 VGAPKLYATE 908 (917)
Q Consensus 899 DG~V~IWdl~ 908 (917)
++.|.+|+++
T Consensus 327 ~~~v~v~~~d 336 (361)
T 3scy_A 327 TNVIQIFERD 336 (361)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEEE
Confidence 7899997665
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-16 Score=172.53 Aligned_cols=286 Identities=9% Similarity=0.022 Sum_probs=207.6
Q ss_pred CCcEEEEEe------cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccC
Q psy3053 591 EGISVASVG------RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECG 654 (917)
Q Consensus 591 dg~~Lasgs------~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg 654 (917)
++++++++. .|+.|.+||..+++.+..+..+..+ .++++||++++++++ .++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 4789999999999988887776655 899999999999886 3778999999999
Q ss_pred eeeEEeccC------CCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEeCCC
Q psy3053 655 RIVTELAGH------EDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAISKDN 725 (917)
Q Consensus 655 ~~i~~l~~H------~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg 725 (917)
+.+..+... ......++++|+|++|++++. +++|.+||+.+. ..... ..... ...+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--------~~~~~~i~~~~-~~~v~~~p~~ 162 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--------DYVEDVTAAAG-CWSVIPQPNR 162 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--------EEEEEEGGGTT-EEEEEECTTS
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC--------cEEEEEecCCC-cceeEEcCCC
Confidence 888877632 345678999999999998874 589999999876 22222 33222 2235667765
Q ss_pred -CEEEEEECCCeEEEEECCC-CeeeEEec-----CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE--EEEeec
Q psy3053 726 -NQLAVGTEAGELIIWSLEN-HLMTQQLS-----DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ--VCNKVF 796 (917)
Q Consensus 726 -~~Lasgs~dG~I~iwDl~~-~~~~~~l~-----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~--i~~~~~ 796 (917)
..+++.+.||.+.+|+... ++...... .....+ ..+.+++++..++..+.++.+.++|+..+.. ......
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 241 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSL 241 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEES
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccc
Confidence 6778888999999998865 44432111 111222 2344578888888888899999999875532 222111
Q ss_pred C-----------CceEEEEEeCC-CEEEEEeC-----------CCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 797 E-----------EKLLCLSWAGE-EKVILGGA-----------LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 797 ~-----------~~i~~l~~s~~-~~lv~gs~-----------dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
. .....++++++ +.++++.. .+.|.+||+.+++.+.++..+. +.++ ++||++|
T Consensus 242 ~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 242 LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEE
Confidence 1 11112567765 45555432 3589999999999999998777 5554 8899999
Q ss_pred EEEeCCCeEEEEECcCC--eEEEEecCCCCCEEEEEEcCCCC
Q psy3053 852 LVGCWDSCVVIYDVECG--RIVTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg--~~l~~l~~h~~~V~slafSpdg~ 891 (917)
++++. ++|.+||..++ +.+..+..+......++++|+|+
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 98887 99999999999 99999877777889999999985
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=178.76 Aligned_cols=277 Identities=10% Similarity=0.029 Sum_probs=187.5
Q ss_pred ceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 582 AITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
.+.+++|||||++|+.++.. ..|.+|++.+++.......+......+.|+|||+.|+.++.++.|++|++.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 37889999999998877543 367888988876554433333333347899999999999999999999999888766
Q ss_pred EeccCCCceeE-------------------EEecCCCCEEEEE-----ECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 659 ELAGHEDAISC-------------------VAWDEKRKRLISG-----SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 659 ~l~~H~~~Vt~-------------------l~~spd~~~L~Sg-----s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
....+...... ++|+|+++.++.+ ..+..|.+||+.++ .......+..
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g--------~~~~~~~~~~ 188 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG--------ELEVIHQDTA 188 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC--------CEEEEEEESS
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC--------cEEeeccCCc
Confidence 66555443333 3467777766544 35678999998765 2222334566
Q ss_pred ceEEEEEeC-CCCEEEEEECC------CeEEEEECCCCeeeEEecCCC-CCCeEEEEEecCCCEEEEEeCC-----CeEE
Q psy3053 715 RIKCLAISK-DNNQLAVGTEA------GELIIWSLENHLMTQQLSDDI-NASVNGVLFSEDGCRVLSCGNN-----CMLN 781 (917)
Q Consensus 715 ~V~~l~~sp-dg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h-~~~V~~v~fspdg~~L~s~s~D-----g~I~ 781 (917)
.+..+.|+| +++.++..+.+ ..|.+||+.+++.. .+.... ...+..++|+|+|+.|+.++.+ +.|+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 789999999 78877776643 36889998766533 333221 3357889999999988877544 4599
Q ss_pred EEECCCCeEEEEeecCCceEEEEEeC-CCEEEEE-e----------------CCCeEEEEECCCCEEEEEEecCCCc---
Q psy3053 782 VYDLTTGMQVCNKVFEEKLLCLSWAG-EEKVILG-G----------------ALGMVYLVDLIQVQLLKQVRAHKDA--- 840 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i~~l~~s~-~~~lv~g-s----------------~dG~I~vwdl~~~~~i~~l~~h~~~--- 840 (917)
+||+.+++......... .. ..|++ ++.+++. + .++.|++||+.+++.. .+..+...
T Consensus 268 ~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccc
Confidence 99999887654433333 33 78887 7665543 2 3478999999887643 34444331
Q ss_pred --------e--EEEeecCCEEEEEeC-CCe--EEEEECcCCeE
Q psy3053 841 --------V--LSLHFDNCTMLVGCW-DSC--VVIYDVECGRI 870 (917)
Q Consensus 841 --------V--~sis~dg~~Lasgs~-DG~--I~Iwdl~tg~~ 870 (917)
+ .+++++|+.|+.++. ++. |...++.++..
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 2 345889998887765 454 44445555544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-16 Score=175.00 Aligned_cols=271 Identities=10% Similarity=0.070 Sum_probs=182.4
Q ss_pred EEEEEecc--cEEEEEEec--cCeeeEE--ec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCC-CCCCCccCCccee
Q psy3053 636 TMLVGCWD--SCVVIYDVE--CGRIVTE--LA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG-ASWSHMKPSKSLV 707 (917)
Q Consensus 636 ~Lasgs~D--g~I~Iwdl~--tg~~i~~--l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~-~~~~~~~~~~~~~ 707 (917)
.+++|+.. +.|.+|+++ +|+.... .. +....+..++|+|++++|++++.+ .|.+|++. ++.. ....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----VHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----EEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----EEee
Confidence 35556543 568887764 5654322 11 234568899999999999999988 99999986 4310 0111
Q ss_pred eeccCCCceEEEEEeCCCCE--EEEEE-------------CCCeEEEEECC-CCeeeEEec---CCCCCCeEEEEEecCC
Q psy3053 708 SQLDLDNRIKCLAISKDNNQ--LAVGT-------------EAGELIIWSLE-NHLMTQQLS---DDINASVNGVLFSEDG 768 (917)
Q Consensus 708 ~~~~h~~~V~~l~~spdg~~--Lasgs-------------~dG~I~iwDl~-~~~~~~~l~---~~h~~~V~~v~fspdg 768 (917)
.... .+.+.+++++|+|+. +++++ .+|.+.+|++. .++....+. ..+...+.+++|+|||
T Consensus 78 ~~~~-~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 78 SHPI-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp EEEC-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred Eeec-CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 1111 123566899999994 44543 68999999997 455443332 1245679999999999
Q ss_pred CEEEEEeC-CCeEEEEECC-CCeEE--EEee---cCCceEEEEEeCCCE-EEEEeC-CCeEEEEECC--CCEEE---EEE
Q psy3053 769 CRVLSCGN-NCMLNVYDLT-TGMQV--CNKV---FEEKLLCLSWAGEEK-VILGGA-LGMVYLVDLI--QVQLL---KQV 834 (917)
Q Consensus 769 ~~L~s~s~-Dg~I~iwDl~-tg~~i--~~~~---~~~~i~~l~~s~~~~-lv~gs~-dG~I~vwdl~--~~~~i---~~l 834 (917)
+++++++. ++.|++||+. +++.. .... +...+..++|+|++. +++++. ++.|.+|++. +++.. ..+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 98887764 6799999998 77653 2233 245689999999884 555554 6899999765 55542 222
Q ss_pred e---c----CCC------ceE--E-EeecCCEEEEEeCC-C-----eEEEEECc-CCeEEE---EecCCCCCEEEEEEcC
Q psy3053 835 R---A----HKD------AVL--S-LHFDNCTMLVGCWD-S-----CVVIYDVE-CGRIVT---ELAGHEDAISCVAWDE 888 (917)
Q Consensus 835 ~---~----h~~------~V~--s-is~dg~~Lasgs~D-G-----~I~Iwdl~-tg~~l~---~l~~h~~~V~slafSp 888 (917)
. . |.. .+. + ++|||++|++++.+ + +|.+|++. +++... ....+...+..++|+|
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 2 1 121 243 3 56899998876643 2 89999996 676543 2334555567899999
Q ss_pred ---CCCEEEEEeCC-CcEEEEecCcceEE
Q psy3053 889 ---KRKRLISGNLV-GAPKLYATEFYLLY 913 (917)
Q Consensus 889 ---dg~~LaSgs~D-G~V~IWdl~~~ll~ 913 (917)
||++|++++.+ +.|.+|+++...+.
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~~~l~ 345 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEchhhCc
Confidence 89999999864 89999999866443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=176.00 Aligned_cols=291 Identities=10% Similarity=0.024 Sum_probs=193.8
Q ss_pred EEeccCCceeeeeeccccc-----eEEEEEeCCCCEEEEEecc---cEEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 606 IHSLKTGRQERSAVLSSMT-----LSSLCILPDNCTMLVGCWD---SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 606 IWd~~t~~~~~~~~~~~~~-----V~sl~~spd~~~Lasgs~D---g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
..|..++..+..+..+... +.+++|+|||+.|+.+... ..|.+||+.+++......++......+.|+|+|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 3466667666655544332 6778899999998877543 4788999988876554443433344488999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE-------------------EEEeCCCCEEEEE-----EC
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC-------------------LAISKDNNQLAVG-----TE 733 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~spdg~~Lasg-----s~ 733 (917)
.|+.++.++.|.+||+.++.. ......+...... ++++|+++.++.+ ..
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEE-------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCE-------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred EEEEEEcCCcEEEEECCCCCc-------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 999999999999999877621 1111111111111 3467777766554 35
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEECCCCeEEEEeec--CCceEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNN------CMLNVYDLTTGMQVCNKVF--EEKLLCLS 804 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~D------g~I~iwDl~tg~~i~~~~~--~~~i~~l~ 804 (917)
++.|.+||+.+++..... .+...+..+.|+| +|+.|+.++.+ ..|.+||+.++........ ...+..++
T Consensus 167 ~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred cceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 678999999988765544 3567789999999 88877776643 3688999876654333222 22477789
Q ss_pred EeCCCE-EEEEeCC-----CeEEEEECCCCEEEEEEecCCCceEEEee-cCCEEEEEe----------------CCCeEE
Q psy3053 805 WAGEEK-VILGGAL-----GMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLVGC----------------WDSCVV 861 (917)
Q Consensus 805 ~s~~~~-lv~gs~d-----G~I~vwdl~~~~~i~~l~~h~~~V~sis~-dg~~Lasgs----------------~DG~I~ 861 (917)
|+|++. ++.++.+ +.|++||+.+++........ ......++ +|+.+++++ .++.|+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 998875 5555433 45999999888654332221 11145578 999888765 347899
Q ss_pred EEECcCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q psy3053 862 IYDVECGRIVTELAGHED-----------AISCVAWDEKRKRLISGNL-VGAPKLYAT 907 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~-----------~V~slafSpdg~~LaSgs~-DG~V~IWdl 907 (917)
+||+.+++.. .+..+.. .+..++|+|||+.|+.++. ++...+|.+
T Consensus 324 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 324 VLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9999888753 3444443 2567899999999887764 566556654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=162.82 Aligned_cols=270 Identities=10% Similarity=-0.021 Sum_probs=179.3
Q ss_pred EEEEecC--CceEEEec--cCCceeeeee---ccccceEEEEEeCCCCEEEEEecccEEEEEEec-cCeeeEEeccC-CC
Q psy3053 595 VASVGRD--AMLKIHSL--KTGRQERSAV---LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE-CGRIVTELAGH-ED 665 (917)
Q Consensus 595 Lasgs~D--g~I~IWd~--~t~~~~~~~~---~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~-tg~~i~~l~~H-~~ 665 (917)
++.|+.. +.|.+|++ .+++...... .....+..++++|++++|++++.+ .|.+|++. +++........ .+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 4455542 45777665 3444322111 122357789999999999999888 99999997 78765433211 12
Q ss_pred ceeEEEecCCCCE--EEEEE-------------CCCeEEEEeCCCCCCCccCCcceeee--ccCCCceEEEEEeCCCCEE
Q psy3053 666 AISCVAWDEKRKR--LISGS-------------WDCTVRVWNTGASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 666 ~Vt~l~~spd~~~--L~Sgs-------------~DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L 728 (917)
.+.+++|+|+|++ +++++ .+|++.+|++...... ...... ..+...+.+++|+|+|+++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL----EKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE----EEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC----cceEeeEEeCCCCcceEEEECCCCCEE
Confidence 3567899999994 45553 6899999998642110 011111 1245679999999999988
Q ss_pred EEEEC-CCeEEEEECC-CCeee--EEecC-CCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECC--CCeEEE---Eee-c
Q psy3053 729 AVGTE-AGELIIWSLE-NHLMT--QQLSD-DINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLT--TGMQVC---NKV-F 796 (917)
Q Consensus 729 asgs~-dG~I~iwDl~-~~~~~--~~l~~-~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~--tg~~i~---~~~-~ 796 (917)
++++. ++.|.+||+. +++.. ..+.. .+...+..++|+|+|+++++++. ++.+.+|++. +++... ... .
T Consensus 160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 87764 6799999998 67643 22321 13567999999999999988775 6899999764 565421 121 1
Q ss_pred C------C-------ceEEEE-EeCCCE-EEEEeCC-C-----eEEEEECC-CCEEEE---EEecCC--CceEEEee---
Q psy3053 797 E------E-------KLLCLS-WAGEEK-VILGGAL-G-----MVYLVDLI-QVQLLK---QVRAHK--DAVLSLHF--- 846 (917)
Q Consensus 797 ~------~-------~i~~l~-~s~~~~-lv~gs~d-G-----~I~vwdl~-~~~~i~---~l~~h~--~~V~sis~--- 846 (917)
. . .+..++ ++|++. +++++.+ + .|.+|++. +++... ....+. ..-.+++|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 1 1 478899 999885 4444432 3 89999996 566543 233232 23345588
Q ss_pred cCCEEEEEeCC-CeEEEEECcCCe
Q psy3053 847 DNCTMLVGCWD-SCVVIYDVECGR 869 (917)
Q Consensus 847 dg~~Lasgs~D-G~I~Iwdl~tg~ 869 (917)
||++|++++.+ +.|.+|+++...
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCEEEEEEcCCCeEEEEEEchhh
Confidence 89999999865 899999987663
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=162.88 Aligned_cols=266 Identities=14% Similarity=0.127 Sum_probs=186.9
Q ss_pred CCCEEEEEe------cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC----------CCeEEEEeCCCC
Q psy3053 633 DNCTMLVGC------WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW----------DCTVRVWNTGAS 696 (917)
Q Consensus 633 d~~~Lasgs------~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~----------DgtI~vWdl~~~ 696 (917)
+++++.+.. .|+.|.+||..+++.+..+..+..+ .++++|+++++++++. +++|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555442 4789999999999998888877655 8999999999998873 678999998765
Q ss_pred CCCccCCcceeee---ccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEE-ecCCCCCCeEEEEEecCC-C
Q psy3053 697 WSHMKPSKSLVSQ---LDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQ-LSDDINASVNGVLFSEDG-C 769 (917)
Q Consensus 697 ~~~~~~~~~~~~~---~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~-l~~~h~~~V~~v~fspdg-~ 769 (917)
.. ...+... ..+......++++|+|++++++.. ++.|.+||+.+++.+.. +. .. ....+.+.|++ .
T Consensus 92 ~~----~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~ 164 (361)
T 2oiz_A 92 TF----EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPR 164 (361)
T ss_dssp CE----EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSS
T ss_pred cE----EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCe
Confidence 21 0011000 012345678999999999998874 58999999999998887 65 22 22335677765 6
Q ss_pred EEEEEeCCCeEEEEECCC-CeEEEEee------cCCceEEEEEeC-CCEEEEEeCCCeEEEEECCCCE--EEEEEec---
Q psy3053 770 RVLSCGNNCMLNVYDLTT-GMQVCNKV------FEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQVQ--LLKQVRA--- 836 (917)
Q Consensus 770 ~L~s~s~Dg~I~iwDl~t-g~~i~~~~------~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~--- 836 (917)
.+++.+.||.+.+|+... ++...... .......+...+ ...++..+.++.+.++|+.... ....+..
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND 244 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence 778888999999998865 55442211 111111111122 2256666788999999987543 2232211
Q ss_pred ---------CCCceEEEeecCCEEEEEeC-----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q psy3053 837 ---------HKDAVLSLHFDNCTMLVGCW-----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896 (917)
Q Consensus 837 ---------h~~~V~sis~dg~~Lasgs~-----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg 896 (917)
.......++++++.++++.. ++.|.+||+.+++.+.++..+. +.+++|+|||++|+++
T Consensus 245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe
Confidence 11223567889888777653 3589999999999999998877 8999999999999998
Q ss_pred eCCCcEEEEecCcc
Q psy3053 897 NLVGAPKLYATEFY 910 (917)
Q Consensus 897 s~DG~V~IWdl~~~ 910 (917)
+. +.|.+||.++.
T Consensus 323 n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 323 DG-GNVNVYDISQP 335 (361)
T ss_dssp CS-SCEEEEECSSS
T ss_pred CC-CeEEEEECCCC
Confidence 87 99999999865
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-13 Score=162.70 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=225.8
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec--cCeeeEEeccCCCce
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE--CGRIVTELAGHEDAI 667 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~--tg~~i~~l~~H~~~V 667 (917)
+.+..+++...++.|.++|..+++.+..+.... .+..+.++||++++++++.|+.|.+||+. +++.+..+.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 444566777789999999999999888776543 45689999999999999999999999996 888888776543 46
Q ss_pred eEEEec----CCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceee-e--cc----C-CCceEEEEEeCCCCEEEE-EEC
Q psy3053 668 SCVAWD----EKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVS-Q--LD----L-DNRIKCLAISKDNNQLAV-GTE 733 (917)
Q Consensus 668 t~l~~s----pd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~-~--~~----h-~~~V~~l~~spdg~~Las-gs~ 733 (917)
..++++ |+|+++++++. +++|.++|..+.... ..+.. . .. | ...+..+..++++..++. ...
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~----~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK----KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE----EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE----EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 789999 69998887664 599999997765211 00000 0 00 1 226788888888765544 455
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec-CCce---EEEE-EeC
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF-EEKL---LCLS-WAG 807 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~-~~~i---~~l~-~s~ 807 (917)
+|.|.++|....+..............++.|+|+|+++++++ .++.|.++|..+++.+..... .... .... ++|
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 699999999876433222213445677899999999987766 578999999999988776655 2111 1222 466
Q ss_pred C-CEEEEEe--CCCeEEEEECCC-------CEEEEEEecCCCc-e-EEEeecCCEEEEEeC-------CCeEEEEECcCC
Q psy3053 808 E-EKVILGG--ALGMVYLVDLIQ-------VQLLKQVRAHKDA-V-LSLHFDNCTMLVGCW-------DSCVVIYDVECG 868 (917)
Q Consensus 808 ~-~~lv~gs--~dG~I~vwdl~~-------~~~i~~l~~h~~~-V-~sis~dg~~Lasgs~-------DG~I~Iwdl~tg 868 (917)
+ +.+.+.+ .++.|.++|..+ .+.++++...... + ...+|+++++.+... .++|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 5 4555444 468999999987 6788888764333 2 345899999988763 459999999877
Q ss_pred -----e-EEEEec--------CCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCcceE
Q psy3053 869 -----R-IVTELA--------GHEDAISCVAWDEKRKRLISGN-----LVGAPKLYATEFYLL 912 (917)
Q Consensus 869 -----~-~l~~l~--------~h~~~V~slafSpdg~~LaSgs-----~DG~V~IWdl~~~ll 912 (917)
. ....+. .....+..+.|+|+|+.+..+. .++.|.|+|.++..+
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 2 112332 1235789999999999887763 379999999987643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-15 Score=184.42 Aligned_cols=271 Identities=12% Similarity=0.100 Sum_probs=187.4
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCc-----eeEEEecCCCCEEEEEECC---------CeEEE
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-----ISCVAWDEKRKRLISGSWD---------CTVRV 690 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-----Vt~l~~spd~~~L~Sgs~D---------gtI~v 690 (917)
..++.|+||+.+++++ ||+|++||+.+++....+.+|... ...++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 4578999999988886 999999999999988888887643 2347899999999999876 56679
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe-----------
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV----------- 759 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V----------- 759 (917)
||+.++ .......+...+...+|||||+.||.+. ++.|++|++.++...+....++...+
T Consensus 97 ~d~~~~--------~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 97 YDLNKR--------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EETTTT--------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EECCCC--------cEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 999886 2223445667899999999999999885 68999999998876543332332222
Q ss_pred ------EEEEEecCCCEEEEEeCCC------------------------------------eEEEEECCC---C---eEE
Q psy3053 760 ------NGVLFSEDGCRVLSCGNNC------------------------------------MLNVYDLTT---G---MQV 791 (917)
Q Consensus 760 ------~~v~fspdg~~L~s~s~Dg------------------------------------~I~iwDl~t---g---~~i 791 (917)
..+.|||||+.|+.++.|. .|++||+.+ + +..
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 3589999999999875321 588899988 7 333
Q ss_pred EEee------cCCceEEEEEeCCCEEEE-EeC----CCeEEEEECCCCE----EE--EEE--ecCCCceE-------EEe
Q psy3053 792 CNKV------FEEKLLCLSWAGEEKVIL-GGA----LGMVYLVDLIQVQ----LL--KQV--RAHKDAVL-------SLH 845 (917)
Q Consensus 792 ~~~~------~~~~i~~l~~s~~~~lv~-gs~----dG~I~vwdl~~~~----~i--~~l--~~h~~~V~-------sis 845 (917)
.... +...+..++|+|++.+++ ... +..|.+||+.+++ +. ..+ .+|...+. ..+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 2221 344588999999988443 222 2479999998876 21 111 34543332 347
Q ss_pred ecCCEEE-EEeC-CC--eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecC
Q psy3053 846 FDNCTML-VGCW-DS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV-----GAPKLYATE 908 (917)
Q Consensus 846 ~dg~~La-sgs~-DG--~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D-----G~V~IWdl~ 908 (917)
|||+.++ ..+. +| .|++||..+++... +......|..+.+ +|++.|+..+.. +...+|.++
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 8999877 6653 44 68888988766554 4434455665542 446666554432 445555543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-14 Score=149.69 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=178.8
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec------cccceEEEEEe-CCCCEEEEEec-ccEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL------SSMTLSSLCIL-PDNCTMLVGCW-DSCVVI 648 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~------~~~~V~sl~~s-pd~~~Lasgs~-Dg~I~I 648 (917)
.+|-..+.+++++++|+++++.+.++.|.+||.. ++....+.. +...+.++++. +++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4566778999999999988888889999999977 555554432 23457888995 67766666544 899999
Q ss_pred EEeccCeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee--ccCCCceEEEEEeCCC
Q psy3053 649 YDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDN 725 (917)
Q Consensus 649 wdl~tg~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg 725 (917)
|+ .+++.+..+. .+...+.+++++++++.+++.+.++.|.+||.... ..... ..+...+.+++++++|
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--------VLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------EEEEEECTTTCSSEEEEEECSSS
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--------EEEEeCCCCccCCcEEEEECCCC
Confidence 99 5677666664 34467899999999998888778899999996432 11111 1344568999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCeEEEEeecC---Cce
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNC-MLNVYDLTTGMQVCNKVFE---EKL 800 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg-~I~iwDl~tg~~i~~~~~~---~~i 800 (917)
+++++.+.++.|.+||.. ++.+..+.. ++...+.+++++++|+++++...++ .|.+||. +++.+..+... ..+
T Consensus 176 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred CEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 988887888999999985 455555542 2236789999999998888887776 9999996 45555544432 236
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
.++++++++.+++++.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 7889998888887788899999987543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=174.05 Aligned_cols=288 Identities=14% Similarity=0.024 Sum_probs=196.8
Q ss_pred eeeccccceEEEEEeCCCCEEEEE--ecccEEEEEEeccCeeeEEeccCCCcee---------EEEec--CCCCE-EEEE
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVG--CWDSCVVIYDVECGRIVTELAGHEDAIS---------CVAWD--EKRKR-LISG 682 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasg--s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt---------~l~~s--pd~~~-L~Sg 682 (917)
.+..|...+..++++++.-.++.+ +.++...||....+.....+..|...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 345677789999999886666666 5588999999765666677777776666 66665 99998 7765
Q ss_pred EC-CCeEEEEeCC--C-CCCCccCCcceeeecc-----CCCceEEEEEeCCCCEEEEEECC----------CeEEEEECC
Q psy3053 683 SW-DCTVRVWNTG--A-SWSHMKPSKSLVSQLD-----LDNRIKCLAISKDNNQLAVGTEA----------GELIIWSLE 743 (917)
Q Consensus 683 s~-DgtI~vWdl~--~-~~~~~~~~~~~~~~~~-----h~~~V~~l~~spdg~~Lasgs~d----------G~I~iwDl~ 743 (917)
+. +..|.+|++. + + ....... +...+.+++|+|||+.|++++.+ ..|++||+.
T Consensus 98 ~~~~~~l~~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGA--------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp BTTTCCEEEECTTSTTCC--------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred ECCCCeEEEEcCCCCCCC--------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 53 5567777765 2 2 1111222 56678899999999999998876 589999998
Q ss_pred C------CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECC-CC---eEEEEeec-CCceEEEE
Q psy3053 744 N------HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--------CMLNVYDLT-TG---MQVCNKVF-EEKLLCLS 804 (917)
Q Consensus 744 ~------~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwDl~-tg---~~i~~~~~-~~~i~~l~ 804 (917)
+ ++.. .+...+...+..++|||||+.|+.++.+ ..|.+||+. ++ +....... ...+..++
T Consensus 170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 8 5543 3321234677889999999999988755 379999998 56 43333333 57789999
Q ss_pred EeCCCEEE-EEeCCC--eEEEEECCCCEEEEEEecCCCc--------eE--EEeecCCEEEEEeCCCeEEEE--ECcCCe
Q psy3053 805 WAGEEKVI-LGGALG--MVYLVDLIQVQLLKQVRAHKDA--------VL--SLHFDNCTMLVGCWDSCVVIY--DVECGR 869 (917)
Q Consensus 805 ~s~~~~lv-~gs~dG--~I~vwdl~~~~~i~~l~~h~~~--------V~--sis~dg~~Lasgs~DG~I~Iw--dl~tg~ 869 (917)
|++++.++ +++.+| .|.+||+.+++.......+... +. +++++++++++++. |.+++| |+.+++
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99887654 455566 6777887677654433333221 22 33568899999998 999999 555555
Q ss_pred EEEEecCCCCCEEEE-EEcCCCCEEEEEeCCCc--EEEEecCcceEEEE
Q psy3053 870 IVTELAGHEDAISCV-AWDEKRKRLISGNLVGA--PKLYATEFYLLYVL 915 (917)
Q Consensus 870 ~l~~l~~h~~~V~sl-afSpdg~~LaSgs~DG~--V~IWdl~~~ll~~L 915 (917)
+..+..|...+..+ +++++.-.+++++.+.. |.+|++++..+..+
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 67788888788877 55444334445566654 44555556555444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-14 Score=154.49 Aligned_cols=252 Identities=12% Similarity=0.109 Sum_probs=174.7
Q ss_pred eEEEEEeCCCCEEEEEe---------cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---C--eEEE
Q psy3053 625 LSSLCILPDNCTMLVGC---------WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---C--TVRV 690 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs---------~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---g--tI~v 690 (917)
+...++ ||+.++... .++.|++|++.+++... + ..+.+++|+|||+.|+.++.+ + .|.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 455556 777776542 36789999999887543 3 568899999999999988754 3 3777
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC---------------------------CeEEEEECC
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---------------------------GELIIWSLE 743 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---------------------------G~I~iwDl~ 743 (917)
|++.++ .......+.. +.+++|+|+|+.|+.++.+ ..|.+||+.
T Consensus 90 ~~~~~g--------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 90 ADLETL--------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EETTTT--------EEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred EECCCC--------ceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 787664 2222222333 8999999999998887642 579999999
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC---------eEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC---------MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVIL 813 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---------~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~ 813 (917)
+++.+..+.. . .+..++|+|+| .++++..++ .|.++| +++....... ..+.++ +|++ .++.
T Consensus 161 ~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 161 SEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp TTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred CCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEE
Confidence 9887455552 3 78899999999 777775542 455555 5654433333 444444 5555 3555
Q ss_pred EeCC--------CeEEEEECCCCEEEEEEecCCCceEE-Eee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 814 GGAL--------GMVYLVDLIQVQLLKQVRAHKDAVLS-LHF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 814 gs~d--------G~I~vwdl~~~~~i~~l~~h~~~V~s-is~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
++.+ +.|.+|| +++......++...+.. +.+ ++ ++++++.+|.+++| +.+++..... .+.+.|.+
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~ 306 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMG 306 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEE
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEe
Confidence 5533 4788888 56554444556667765 533 66 88889999999999 8877664444 45778999
Q ss_pred EEEcCCCCEEEEEeCCCcE-EEEecC
Q psy3053 884 VAWDEKRKRLISGNLVGAP-KLYATE 908 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V-~IWdl~ 908 (917)
++|+| ..+++++.++.. .+|.++
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999 678888777765 788776
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-14 Score=154.67 Aligned_cols=254 Identities=8% Similarity=-0.001 Sum_probs=185.0
Q ss_pred cceEEEEEeCCCCEEEEEecc------------------------cEEEEEEeccCeeeEEec-cCCCceeEEEecCCCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWD------------------------SCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRK 677 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~D------------------------g~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~~ 677 (917)
..+.+++++|+|+++++...+ +.|.+||..+++....+. ++-.....++++++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 457889999999888887776 479999999998876664 4556789999999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCc---ceeeeccCCCceEEEEEeC-CCCEEEEEE-CCCeEEEEECCCCeeeEEec
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSK---SLVSQLDLDNRIKCLAISK-DNNQLAVGT-EAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~---~~~~~~~h~~~V~~l~~sp-dg~~Lasgs-~dG~I~iwDl~~~~~~~~l~ 752 (917)
.+++.+.++.|.+||............ .......+-..+..++++| ++.++++.+ .++.|.+|| .++..+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 888888899999999754310000000 0000023344688999999 788888876 689999999 5566666654
Q ss_pred CC---------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCe
Q psy3053 753 DD---------INASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGM 819 (917)
Q Consensus 753 ~~---------h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~ 819 (917)
.. +-.....++++|+ |.++++...++.|++||..+|+.+..+.. ...+.+++++| +.++..
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~----- 256 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV----- 256 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE-----
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe-----
Confidence 11 1234889999998 76777777888999999988877766532 23455555555 232221
Q ss_pred EEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEe---cCCCCCEEEEEEcCCCCEEEEE
Q psy3053 820 VYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTEL---AGHEDAISCVAWDEKRKRLISG 896 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l---~~h~~~V~slafSpdg~~LaSg 896 (917)
+|+..++...++.|++|+..+++.+..+ .++...+.+++++|+|..+++.
T Consensus 257 ---------------------------~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 257 ---------------------------NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp ---------------------------ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred ---------------------------CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 2333344455678999999999988887 3667789999999999888888
Q ss_pred eCCCcEEEEecCcc
Q psy3053 897 NLVGAPKLYATEFY 910 (917)
Q Consensus 897 s~DG~V~IWdl~~~ 910 (917)
..++.|++|++++.
T Consensus 310 ~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 310 AHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCEEEEEEEEC
T ss_pred CCCCEEEEEeCCcc
Confidence 89999999998754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-14 Score=154.72 Aligned_cols=266 Identities=15% Similarity=0.165 Sum_probs=180.9
Q ss_pred cceEEEEEeCCCcEEEEEe---------cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc---c--EE
Q psy3053 581 EAITAVAICGEGISVASVG---------RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD---S--CV 646 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D---g--~I 646 (917)
..+...++ ||+.++... .++.|.+|++.+++... + ..+.+++|+|||+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34566777 888777643 25679999998876533 3 467889999999999988764 3 48
Q ss_pred EEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---------------------------CeEEEEeCCCCCCC
Q psy3053 647 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---------------------------CTVRVWNTGASWSH 699 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---------------------------gtI~vWdl~~~~~~ 699 (917)
++|++.+++.......+ . +.+++|+|+|+.|+.++.+ ..|.+||+.++.
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-- 163 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-- 163 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--
Confidence 88888888766555433 3 9999999999999888743 578899987651
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC---------eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG---------ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR 770 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG---------~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~ 770 (917)
....... . .+..++|+|+| +++++..++ .|.++| +++.. .+. .+ ..+..+ +|+|+.
T Consensus 164 -----~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~-~~-~~~~~~--spdg~~ 228 (347)
T 2gop_A 164 -----VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMF-EK-VSFYAV--DSDGER 228 (347)
T ss_dssp -----EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEE-EE-ESEEEE--EECSSC
T ss_pred -----EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-Eec-cC-cceeeE--CCCCCE
Confidence 1011222 2 68899999999 777776542 455555 55543 333 23 445444 999999
Q ss_pred EEEEeCC--------CeEEEEECCCCeEEEEee-cCCceEE-EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCc
Q psy3053 771 VLSCGNN--------CMLNVYDLTTGMQVCNKV-FEEKLLC-LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDA 840 (917)
Q Consensus 771 L~s~s~D--------g~I~iwDl~tg~~i~~~~-~~~~i~~-l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~ 840 (917)
|+.++.+ ..|.+|| +++...... +...+.. +.|+ ++.+++++.++.+++| +.+++.. .+..+...
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~ 303 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PIAKGRHW 303 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EEECSSSE
T ss_pred EEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EEecCCCe
Confidence 9887754 3688888 555443322 2455665 8898 7677778889999999 8766654 34445777
Q ss_pred eEEEeecCCEEEEEeCCCeE-EEEECcCCeEEEEecCCCC
Q psy3053 841 VLSLHFDNCTMLVGCWDSCV-VIYDVECGRIVTELAGHED 879 (917)
Q Consensus 841 V~sis~dg~~Lasgs~DG~I-~Iwdl~tg~~l~~l~~h~~ 879 (917)
|.++++.+..+++++.++.. .+|.+. ++ ...+..|..
T Consensus 304 v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 304 IMGFDVDEIVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEEEEESSSEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEeeeeeCcEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 88876544677777777665 777776 55 444555544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-14 Score=154.85 Aligned_cols=266 Identities=8% Similarity=-0.011 Sum_probs=190.6
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
..+.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++++.+++++.++.|.+||..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence 346677888888777777888899999 456667777777888999999999988888889999999987651
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECC----CeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeC-
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA----GELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGN- 776 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d----G~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~- 776 (917)
.......+...+.+++++++|++++++..+ +.|.+||..++.....+. ......+.+++++|+|+.+++...
T Consensus 78 --~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 --IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp --EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred --EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 111112456779999999999988877666 689999998876553332 134567899999999987776654
Q ss_pred -----CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEE-EeCCCeEEEEECCC-CEEEE--------EEecCCCc
Q psy3053 777 -----NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VIL-GGALGMVYLVDLIQ-VQLLK--------QVRAHKDA 840 (917)
Q Consensus 777 -----Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~-gs~dG~I~vwdl~~-~~~i~--------~l~~h~~~ 840 (917)
.+.|..+|..+++..........+..+++++++. +++ .+.++.|.+||..+ +..+. .+.++ ..
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~ 234 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG 234 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC
Confidence 3567777776655443333334578899998864 544 44578999999963 32221 11122 34
Q ss_pred eEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC------CEEEEEEcCCCCEEEEEeCCC
Q psy3053 841 VLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED------AISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 841 V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~------~V~slafSpdg~~LaSgs~DG 900 (917)
+..+ +++|++.++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+|
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 4555 567888887778899999998 4666666654433 689999999988887666553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=161.60 Aligned_cols=263 Identities=12% Similarity=-0.001 Sum_probs=169.2
Q ss_pred EEeccCCceeeeeeccccceEE-----EEEeCCCCEEEEEec-cc--EEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 606 IHSLKTGRQERSAVLSSMTLSS-----LCILPDNCTMLVGCW-DS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 606 IWd~~t~~~~~~~~~~~~~V~s-----l~~spd~~~Lasgs~-Dg--~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
.++..++.....+..+...... .+|+|||+.|+.++. +| .|.+||+.+++......++...+.+++|+||++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 3456667777777666554444 789999999999887 66 488889999988877777777776788999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE--EEeCCCCEEEEEE----------------------C
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL--AISKDNNQLAVGT----------------------E 733 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l--~~spdg~~Lasgs----------------------~ 733 (917)
.|+.++.++.|.+||+.++. .......+...+... .+++++..++... .
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 99999999999999998762 111122233334333 3489999887432 3
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEECCCCeEEEEeecC--CceEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNN------CMLNVYDLTTGMQVCNKVFE--EKLLCLS 804 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~D------g~I~iwDl~tg~~i~~~~~~--~~i~~l~ 804 (917)
++.|.+||+.+++..... .+...+..++|+| ||+.|+.+..+ ..|.++|..++......... ..+...+
T Consensus 167 ~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred cceEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 468999999998765444 3556789999999 99999887753 25666666544322111111 1122333
Q ss_pred EeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC-C----CeEEEEECcCCeEE--EEecCC
Q psy3053 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-D----SCVVIYDVECGRIV--TELAGH 877 (917)
Q Consensus 805 ~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~-D----G~I~Iwdl~tg~~l--~~l~~h 877 (917)
| +|||+.|+..+. + +.|++||+.+++.. ..+.++
T Consensus 245 ~---------------------------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 285 (388)
T 3pe7_A 245 W---------------------------------------VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC 285 (388)
T ss_dssp E---------------------------------------CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred E---------------------------------------CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence 3 445554433222 1 13667777666532 222221
Q ss_pred CCC---EEEEEEcCCCCEEEEE---------eCCCcEEEEecCcceEEEEe
Q psy3053 878 EDA---ISCVAWDEKRKRLISG---------NLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 878 ~~~---V~slafSpdg~~LaSg---------s~DG~V~IWdl~~~ll~~Lt 916 (917)
... ...++|+|||+.|+.. +.++.|++||+++..+..++
T Consensus 286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 100 1113689999988754 45678999999887665553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-13 Score=144.94 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=174.8
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe-CCCCEEEEEEC-CCeEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTE-AGELI 738 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~-dG~I~ 738 (917)
.++-..+.+++++++++.+++.+.++.|.+||...... ...........+...+.+++++ +++.++++... ++.|.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 34667789999999999888888899999999763210 0000000001233568899995 66666666543 78999
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEe
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGG 815 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs 815 (917)
+|| .+++.+..+...+...+.+++++++|+.+++...++.|.+||.. ++.+..... ...+.++++++++.+++++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 56677766654455678999999999988877788999999964 555555432 2458899999988776664
Q ss_pred -CCCeEEEEECCCCEEEEEEecC--CCceEEE--eecCCEEEEEeCCC-eEEEEECcCCeEEEEecCCCC--CEEEEEEc
Q psy3053 816 -ALGMVYLVDLIQVQLLKQVRAH--KDAVLSL--HFDNCTMLVGCWDS-CVVIYDVECGRIVTELAGHED--AISCVAWD 887 (917)
Q Consensus 816 -~dG~I~vwdl~~~~~i~~l~~h--~~~V~si--s~dg~~Lasgs~DG-~I~Iwdl~tg~~l~~l~~h~~--~V~slafS 887 (917)
.++.|.+||. +++.+..+..+ ...+.++ +++|+++++...++ .|.+|+. +++.+..+..+.. .+.+++++
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence 5789999997 45566666443 2456666 56788888887776 9999995 5677776655433 47899999
Q ss_pred CCCCEEEEEeCCCcEEEEecCc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~ 909 (917)
|+|+.+++ +.|+.|++|++..
T Consensus 260 ~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 260 DDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCcEEEE-CCCCeEEEEEccc
Confidence 99987777 6799999999864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=151.37 Aligned_cols=267 Identities=11% Similarity=0.083 Sum_probs=188.9
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788899998888777888999999 34455555556666789999999998888888999999999988776655
Q ss_pred ccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--- 733 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--- 733 (917)
..+...+.++++++++++++++..+ +.|.+||..++... ...........+.+++++|+|+++++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-----DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-----EEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-----EEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 4567889999999999888877666 68999998765211 01111124467899999999987776653
Q ss_pred ---CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC-CeEEEE------eecC--Cce
Q psy3053 734 ---AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTT-GMQVCN------KVFE--EKL 800 (917)
Q Consensus 734 ---dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~t-g~~i~~------~~~~--~~i 800 (917)
.+.|..+|..+++...... ....+..++|+|+|+.++.+ +.++.|.+||..+ +..... .... ..+
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP 235 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred cCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCC
Confidence 3667777776655433222 23457899999999866554 4578999999863 322111 1122 357
Q ss_pred EEEEEeCCCEEEEEe-CCCeEEEEECCCCEEEEEEecCCC------ceEEE--eecCCEEEEEeCCC
Q psy3053 801 LCLSWAGEEKVILGG-ALGMVYLVDLIQVQLLKQVRAHKD------AVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~h~~------~V~si--s~dg~~Lasgs~DG 858 (917)
..+++++++.+.+++ .++.|.+||. +++.+..+..+.. .+.++ +++++.|++++.+|
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 789999887776655 5689999998 5666666654432 35555 56777777666553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-13 Score=150.16 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=177.0
Q ss_pred CcceEEEEEeCCCcEEEEEecC------------------------CceEEEeccCCceeeeee-ccccceEEEEEeCCC
Q psy3053 580 KEAITAVAICGEGISVASVGRD------------------------AMLKIHSLKTGRQERSAV-LSSMTLSSLCILPDN 634 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~D------------------------g~I~IWd~~t~~~~~~~~-~~~~~V~sl~~spd~ 634 (917)
-+.|.+|+++++|+++++.+.+ +.|.+||..+++...... .+-.....+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999988888777 479999998888766544 233467889999999
Q ss_pred CEEEEEecccEEEEEEeccCe-eeEEe---------ccCCCceeEEEecC-CCCEEEEEE-CCCeEEEEeCCCCCCCccC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGR-IVTEL---------AGHEDAISCVAWDE-KRKRLISGS-WDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~-~i~~l---------~~H~~~Vt~l~~sp-d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~ 702 (917)
+++++.+.++.|++|+.+... .+..+ .++......++++| ++..+++.+ .++.|++|+....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~------ 176 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK------ 176 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC------
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC------
Confidence 988888889999999986442 44444 34555789999999 788888876 6999999995432
Q ss_pred Ccceeeec----------cCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCE
Q psy3053 703 SKSLVSQL----------DLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCR 770 (917)
Q Consensus 703 ~~~~~~~~----------~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~ 770 (917)
...... .+-..+..++++|+ +.++++...++.|.+||..+++.+..+.. .+...+.+++++| +..
T Consensus 177 --~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 177 --FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFL 253 (329)
T ss_dssp --EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEE
T ss_pred --EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEE
Confidence 111111 11234789999998 77777777889999999998888887752 3556788999999 433
Q ss_pred EEEE-------eCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCCCEEE-EEeCCCeEEEEECC
Q psy3053 771 VLSC-------GNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEEKVI-LGGALGMVYLVDLI 826 (917)
Q Consensus 771 L~s~-------s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~~lv-~gs~dG~I~vwdl~ 826 (917)
+++. ..+..+++||..+++.+..+. ....+..+++++++.++ +...++.|++|++.
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3333 334589999999998887753 33457888998887654 44557788888864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-12 Score=135.33 Aligned_cols=279 Identities=6% Similarity=-0.051 Sum_probs=194.4
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
..+...+.+++++++|+..++...++.|.+||.. ++..... ......+.++++++++.+.++...++.|..|+.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 4455789999999999977776668899999987 5443221 2234568899999999888877778899999976 43
Q ss_pred ee-EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 656 IV-TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 656 ~i-~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
.. ..+......+.++++.+++..+++...++.|..||. ++. ............+.+++++++|++.++...+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 161 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK------IREYELPNKGSYPSFITLGSDNALWFTENQN 161 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC------EEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC------EEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence 32 222234567899999999988888777889999997 331 0111112234568999999999888777777
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKV 811 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~l 811 (917)
+.|..||. +++............+.+++++++|...++...++.|.+||. ++.... ... ...+.++++++++.+
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCE
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCE
Confidence 89999999 666544322234567889999999987777667889999999 665433 222 356889999988887
Q ss_pred EEEe-CCCeEEEEECCCCEEEEE-EecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 812 ILGG-ALGMVYLVDLIQVQLLKQ-VRAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 812 v~gs-~dG~I~vwdl~~~~~i~~-l~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
.+++ .++.|..||. +++.... +..+...+.++. +++.+.+ ++..+.+..++.++++
T Consensus 239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~g~l~v-~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICFDGETIWF-AMECDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEECSSCEEE-EETTTEEEEEEEC---
T ss_pred EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEecCCCEEE-EecCCcEEEEEcCccc
Confidence 7776 6689999998 4543322 233445666664 3455444 4446777777776543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-14 Score=170.14 Aligned_cols=246 Identities=9% Similarity=-0.107 Sum_probs=168.7
Q ss_pred cCCCceeEEEecCCCCEEE-----EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 662 GHEDAISCVAWDEKRKRLI-----SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~-----Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+|...+.+++|||||++|+ +|+.+.+|++||+.++.... ..... ......++|+|||+.|+.++.++.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~-~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIE-GGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBS-CCTTCCCEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccC-cccccceEEecCCCEEEEEEecCC
Confidence 4566799999999999998 44445789999998873210 00011 111267999999999999988776
Q ss_pred -------------EEEEECCCCee--eEEec-CCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCeEEEEeec
Q psy3053 737 -------------LIIWSLENHLM--TQQLS-DDINASVNGVLFSEDGCRVLSCGNNC----MLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 737 -------------I~iwDl~~~~~--~~~l~-~~h~~~V~~v~fspdg~~L~s~s~Dg----~I~iwDl~tg~~i~~~~~ 796 (917)
|++|++.++.. ..... ..+...+.++.|||||++|+.++.++ .|.+|+..++........
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 99999998762 12222 13456788999999999998887665 677887766654444444
Q ss_pred CCceEEEEEeCCCEEEEEeC----CCeEEEEECCCCEE---EEEEecC-CCceEEEee-cCCEEEEEeCCCeEEEEECc-
Q psy3053 797 EEKLLCLSWAGEEKVILGGA----LGMVYLVDLIQVQL---LKQVRAH-KDAVLSLHF-DNCTMLVGCWDSCVVIYDVE- 866 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~----dG~I~vwdl~~~~~---i~~l~~h-~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~- 866 (917)
........+.+++ ++..+. ++.|.+||+.++.. ...+..+ ...+..+++ ++.+++++..||..++|.+.
T Consensus 271 ~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 271 VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp SSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 4445555555444 555443 58899999987652 2333333 445666655 56677888889988888665
Q ss_pred CCeEEEEecCC-CCCEEEEEEcCCCCEEEEE----eCCCcEEEEecCcceEEEE
Q psy3053 867 CGRIVTELAGH-EDAISCVAWDEKRKRLISG----NLVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 867 tg~~l~~l~~h-~~~V~slafSpdg~~LaSg----s~DG~V~IWdl~~~ll~~L 915 (917)
+++....+..+ .+.|..++++|+++.++.. ...++|++||+.+.....+
T Consensus 350 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 350 KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 46666667655 6678889999999877733 3457899999986544433
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-13 Score=147.23 Aligned_cols=262 Identities=11% Similarity=-0.014 Sum_probs=190.2
Q ss_pred cccEEEEEEeccCeeeEEec------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 642 WDSCVVIYDVECGRIVTELA------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
.+++|.++|.++++....+. ........+++. ++...++...++.|.+||..++ ...........
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--------~~~~~i~~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF--------KEVGRITGFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC--------CEEEEEECCSS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc--------EEEEEcCCCCC
Confidence 48899999999998766542 122446778775 3455566666899999999876 22222234567
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC----CCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCe
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN----ASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGM 789 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~----~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~ 789 (917)
...+++++++...++...++.|.+||+.+++....+..+.. .....+++ . +..+++++ .++.|.++|..+++
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence 88999999985444444889999999999988877652221 14567777 3 44555554 48899999999999
Q ss_pred EEEEeecCCceEEEEEeCCCEEEEEeCC-----------CeEEEEECCCCEEEEEEecC-CCceEEE--eecCCEEEEEe
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEKVILGGAL-----------GMVYLVDLIQVQLLKQVRAH-KDAVLSL--HFDNCTMLVGC 855 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~lv~gs~d-----------G~I~vwdl~~~~~i~~l~~h-~~~V~si--s~dg~~Lasgs 855 (917)
.+...........+.+++++.+++++.. +.|.++|..+++....+... ......+ +++++.++++.
T Consensus 164 ~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 164 VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 8888877777788899998887777654 68999999999988777532 2234444 66789888876
Q ss_pred CCCeEEEEECcCCeEEEE--ecCCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEecCcceEEEEe
Q psy3053 856 WDSCVVIYDVECGRIVTE--LAGHEDAISCVAWDE-KRKRLISG----NLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~--l~~h~~~V~slafSp-dg~~LaSg----s~DG~V~IWdl~~~ll~~Lt 916 (917)
. .|.+||..+++.... +..+.....+++++| ++...++. ..++.|.+|+.++.++..+.
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 5 899999988876321 122245689999999 55555665 57899999999988888775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-13 Score=143.32 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=174.1
Q ss_pred eeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 574 HFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 44455666788999999998 7778888999999999877 55566667778999999999988877778999999998
Q ss_pred cCeeeEEeccC----CCceeEEEecCCCCEEEEEEC-----------------CCeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 653 CGRIVTELAGH----EDAISCVAWDEKRKRLISGSW-----------------DCTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 653 tg~~i~~l~~H----~~~Vt~l~~spd~~~L~Sgs~-----------------DgtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
+++........ ...+.+++++|+|+++++.+. .+.|..++.. + .......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~~~~~ 169 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G--------TLSAPIR 169 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S--------CEEEEEC
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C--------CEEEeec
Confidence 88765443322 234678999999998887431 2345555443 2 2222334
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECC-CCee---eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTEAGELIIWSLE-NHLM---TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~-~~~~---~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
+......++|+|+++.+++.+.++.|.+|++. ++.. ...+ ..+...+.+++++++|++.++. ++.|.+||..
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 55667899999999988777778999999987 4544 3334 3455667889999999866655 7899999986
Q ss_pred CeEEEEeecCCceEEEEEe-CCC-EEEEEeCCCeEEEEECCCCEE
Q psy3053 788 GMQVCNKVFEEKLLCLSWA-GEE-KVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 788 g~~i~~~~~~~~i~~l~~s-~~~-~lv~gs~dG~I~vwdl~~~~~ 830 (917)
++.+..+.....+.++++. +++ .+++++. +.+..++..+.+.
T Consensus 246 g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~-~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 246 GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS-TEFWSIETNVRGL 289 (296)
T ss_dssp SCEEEEEECSSCCCEEEEESTTSCEEEEEET-TEEEEEECSCCBC
T ss_pred CCEEEEEECCCCceeEEEECCCCCEEEEEcC-CeEEEEEcccccc
Confidence 6666666654448888884 554 4666655 4566667665543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-11 Score=131.31 Aligned_cols=276 Identities=3% Similarity=-0.070 Sum_probs=195.1
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
+...+.+++++++++..++...++.|.+||.. ++.... ...+...+.++++++++...++...++.|..||....
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--- 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--- 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC---
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc---
Confidence 34567899999999877776668999999988 654332 2335577999999999988887777889999997522
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
............+.+++++++|.+.++...++.|..||. +++............+.+++++++|...++...++.
T Consensus 89 ----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 89 ----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp ----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred ----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 111111124557899999999988887777889999998 555443332234567899999999988777777789
Q ss_pred EEEEECCCCeEEEE-e-ecCCceEEEEEeCCCEEEEEe-CCCeEEEEECCCCEEEEE-EecCCCceEEE--eecCCEEEE
Q psy3053 780 LNVYDLTTGMQVCN-K-VFEEKLLCLSWAGEEKVILGG-ALGMVYLVDLIQVQLLKQ-VRAHKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 780 I~iwDl~tg~~i~~-~-~~~~~i~~l~~s~~~~lv~gs-~dG~I~vwdl~~~~~i~~-l~~h~~~V~si--s~dg~~Las 853 (917)
|..||. +++.... . .....+.++++++++.+.+++ .++.|.+||. +++.... ...+...+.++ +++|+..++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 999998 6655432 1 123457889999877776665 4689999999 6654332 23344567777 456776666
Q ss_pred EeCCCeEEEEECcCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 854 GCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~-l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
...++.|..||. +++.... +..+...+.++++ ++|...++.+ .+.+..++.+..
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 557889999998 4554322 3445567999999 8888777655 566777777654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-12 Score=158.60 Aligned_cols=241 Identities=15% Similarity=0.095 Sum_probs=169.7
Q ss_pred cceEEEEEeCCCCEEEEEeccc-----EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCe----------
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDS-----CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCT---------- 687 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg-----~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt---------- 687 (917)
..+..++|||||++||.++.++ .|++||+.+|+.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 3578899999999999876644 8999999999877643322 23678999999999999998876
Q ss_pred ------EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-----CCeEEEEECCC------Ce-eeE
Q psy3053 688 ------VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-----AGELIIWSLEN------HL-MTQ 749 (917)
Q Consensus 688 ------I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-----dG~I~iwDl~~------~~-~~~ 749 (917)
|.+|++.++... ...+.....+...+..++|+|+|+.|+.++. +..|.+||+.+ +. ...
T Consensus 204 ~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred cCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999765210 0011112224556789999999999988765 56899999986 43 344
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCeE---EEEeecCC--ceEEEEEeCCCE-EEEEeCCC-
Q psy3053 750 QLSDDINASVNGVLFSEDGCRVLSCGNN----CMLNVYDLTTGMQ---VCNKVFEE--KLLCLSWAGEEK-VILGGALG- 818 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg~~L~s~s~D----g~I~iwDl~tg~~---i~~~~~~~--~i~~l~~s~~~~-lv~gs~dG- 818 (917)
.+. .+...+.. .|+|+|..|+..+.. +.|.+||+.++.. .....+.. .+..+++.+++. ++++..++
T Consensus 281 ~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 281 KLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp EEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred Eee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 454 34444444 588999988877653 3699999987641 22223322 577888885555 45566666
Q ss_pred -eEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEE-e---CCCeEEEEECcCCe
Q psy3053 819 -MVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVG-C---WDSCVVIYDVECGR 869 (917)
Q Consensus 819 -~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasg-s---~DG~I~Iwdl~tg~ 869 (917)
.|.+|++.+++.+..+..+.+.+..+ ++++..++.. + ..++|+.||+.+++
T Consensus 359 ~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46777887888878888787777777 4577665543 2 34789999998876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-13 Score=161.37 Aligned_cols=240 Identities=13% Similarity=0.038 Sum_probs=164.5
Q ss_pred CCCceeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe-
Q psy3053 663 HEDAISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE- 736 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~- 736 (917)
|...+..++|||||++|+.++.++ +|++||+.++. ..........+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--------~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--------ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--------EEEEEEEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CCcccccCcccceEEEEeCCCEEEEEEECCcc
Confidence 445688999999999998776543 89999998762 1111111223678999999999999988766
Q ss_pred ---------------EEEEECCCCeee--EEec-CCCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCC------
Q psy3053 737 ---------------LIIWSLENHLMT--QQLS-DDINASVNGVLFSEDGCRVLSCGN-----NCMLNVYDLTT------ 787 (917)
Q Consensus 737 ---------------I~iwDl~~~~~~--~~l~-~~h~~~V~~v~fspdg~~L~s~s~-----Dg~I~iwDl~t------ 787 (917)
|++|++.++... .... ..+...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999887632 2222 124556889999999999988765 56899999976
Q ss_pred C--eEEEEeecCCceEEEEEeC-CCEEEEEeCC----CeEEEEECCCCE--EEEEEecCCC--ceEEEee--cCCEEEEE
Q psy3053 788 G--MQVCNKVFEEKLLCLSWAG-EEKVILGGAL----GMVYLVDLIQVQ--LLKQVRAHKD--AVLSLHF--DNCTMLVG 854 (917)
Q Consensus 788 g--~~i~~~~~~~~i~~l~~s~-~~~lv~gs~d----G~I~vwdl~~~~--~i~~l~~h~~--~V~sis~--dg~~Lasg 854 (917)
+ .............. .+++ .+.++..+.. +.|.+||+.++. ....+..|.. .+..+.+ ++.+++++
T Consensus 275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 4 22222223333333 2333 2355554443 469999998764 2244444544 5666644 55667778
Q ss_pred eCCCe--EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-e---CCCcEEEEecCcce
Q psy3053 855 CWDSC--VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-N---LVGAPKLYATEFYL 911 (917)
Q Consensus 855 s~DG~--I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg-s---~DG~V~IWdl~~~l 911 (917)
..||. |.+|++.+|+.+..+..+.+.|.+++++|++..++.. + ..++|..||+.+..
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88884 5667777788888888888889999999999876633 2 45789999987543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=164.92 Aligned_cols=273 Identities=11% Similarity=-0.025 Sum_probs=178.9
Q ss_pred eCCCcEEEEEecCC---ceEEEecc--CCceeeeee------ccccceEEEEEeCCCCEEEE-----EecccEEEEEEec
Q psy3053 589 CGEGISVASVGRDA---MLKIHSLK--TGRQERSAV------LSSMTLSSLCILPDNCTMLV-----GCWDSCVVIYDVE 652 (917)
Q Consensus 589 Spdg~~Lasgs~Dg---~I~IWd~~--t~~~~~~~~------~~~~~V~sl~~spd~~~Las-----gs~Dg~I~Iwdl~ 652 (917)
+|+|++++....++ .-.+|... .+.....+. .|...+.+++|||||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47788877766544 34555543 343222221 23346889999999999984 3445689999999
Q ss_pred cCeeeEEeccCCCce--eEEEecCCCCEEEEEECCCe-------------EEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 653 CGRIVTELAGHEDAI--SCVAWDEKRKRLISGSWDCT-------------VRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 653 tg~~i~~l~~H~~~V--t~l~~spd~~~L~Sgs~Dgt-------------I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
+|+.+. ..+...+ ..++|+|||+.|+.++.|.. |.+|++.++... ...+.....+...+.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFL 230 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---ceEEEecCCCCEEEE
Confidence 998651 1122223 68999999999999998876 999999876211 011112223456788
Q ss_pred EEEEeCCCCEEEEEECCC----eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCe
Q psy3053 718 CLAISKDNNQLAVGTEAG----ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGM 789 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG----~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~ 789 (917)
++.|+|+|++|++++.++ .|.+++..++... .+. .+...+....+ ++|. ++..+. ++.|.+||+.++.
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~-~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV-KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE-ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee-cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 999999999998887666 6778877665433 333 23445555556 5666 544443 5789999998764
Q ss_pred E---EEEeec--CCceEEEEEeCCCEEEEEeCCCeEEEEECC-CCEEEEEEecC-CCceEEE--eecCCEEEEEe----C
Q psy3053 790 Q---VCNKVF--EEKLLCLSWAGEEKVILGGALGMVYLVDLI-QVQLLKQVRAH-KDAVLSL--HFDNCTMLVGC----W 856 (917)
Q Consensus 790 ~---i~~~~~--~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~-~~~~i~~l~~h-~~~V~si--s~dg~~Lasgs----~ 856 (917)
. ...... ...+..++++++..+++...++..++|.+. +++....+..+ .+.+..+ +++++.++... .
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT 386 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 2 222222 345777888866566777888887777554 45556666554 5555555 56777766333 3
Q ss_pred CCeEEEEECcCCeE
Q psy3053 857 DSCVVIYDVECGRI 870 (917)
Q Consensus 857 DG~I~Iwdl~tg~~ 870 (917)
.++|++||+.+++.
T Consensus 387 P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 387 PRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCcE
Confidence 47899999988774
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-12 Score=138.58 Aligned_cols=240 Identities=8% Similarity=-0.041 Sum_probs=171.6
Q ss_pred eeeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 617 SAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
.+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++++++++.+.++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3333444567899999998 7788888999999999887 566667778899999999999888777778999999866
Q ss_pred CCCCccCCcceeee--ccCCCceEEEEEeCCCCEEEEE----E-------------CCCeEEEEECCCCeeeEEecCCCC
Q psy3053 696 SWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNNQLAVG----T-------------EAGELIIWSLENHLMTQQLSDDIN 756 (917)
Q Consensus 696 ~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~~Lasg----s-------------~dG~I~iwDl~~~~~~~~l~~~h~ 756 (917)
+... ..... ......+..++++|+|+++++. + ..+.|..++.. ++.. .+. .+.
T Consensus 100 g~~~-----~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-~~~ 171 (296)
T 3e5z_A 100 GEWE-----SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-RDR 171 (296)
T ss_dssp CCEE-----EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-CCC
T ss_pred CcEE-----EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-cCC
Confidence 5210 11000 0112346789999999988873 3 13467677665 4433 333 355
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCeE---EEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEE
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLT-TGMQ---VCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~-tg~~---i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i 831 (917)
.....++|+|+|+.+++.+.++.|.+|++. ++.. .... .....+.++++++++.+.+++ ++.|.+||.. ++.+
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEE
Confidence 678899999999999777778999999986 5544 1122 123446788999998888888 8999999986 7777
Q ss_pred EEEecCCCceEEEe---ecCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 832 KQVRAHKDAVLSLH---FDNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 832 ~~l~~h~~~V~sis---~dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
..+..+.. +.++. ++++.|++++.++ +.-++..+.+.
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 78877666 66653 5778888888764 55556655543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-12 Score=141.82 Aligned_cols=269 Identities=10% Similarity=0.072 Sum_probs=185.8
Q ss_pred cCCceEEEeccCCceeeeeec------cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEec
Q psy3053 600 RDAMLKIHSLKTGRQERSAVL------SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 673 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~------~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~s 673 (917)
.+++|.++|.++++....+.. .......+++. +++..++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 378999999999887655421 11234566664 45555666668999999999999988885 34678899998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC------ceEEEEEeCCCCEEEEEE--CCCeEEEEECCCC
Q psy3053 674 EKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN------RIKCLAISKDNNQLAVGT--EAGELIIWSLENH 745 (917)
Q Consensus 674 pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~------~V~~l~~spdg~~Lasgs--~dG~I~iwDl~~~ 745 (917)
+++...++...++.|.+||..+.. ......... ....+++ ++..+.+++ .++.|.++|+.++
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CCCeEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence 888544444489999999988762 111111112 4556777 344455544 4889999999999
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC----------CeEEEEECCCCeEEEEeec--CCceEEEEEeCCCE-EE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN----------CMLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEK-VI 812 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D----------g~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~-lv 812 (917)
+....+.. ......++++|+|++++++..+ +.|.++|..+++....... ......+++++++. ++
T Consensus 163 ~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 163 KVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp EEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred eEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence 98887762 3456789999999877776554 7899999999988776665 34689999998554 54
Q ss_pred EEeCCCeEEEEECCCCEEEEE--EecCCCceEEE--ee-cCCEEEEE----eCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQ--VRAHKDAVLSL--HF-DNCTMLVG----CWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~--l~~h~~~V~si--s~-dg~~Lasg----s~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
++.. .|.+||..+++.... +..+......+ +| ++...++. ..++.|.+||.. ++.+.++... ..-..
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~ 316 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGA 316 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEE
T ss_pred EEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcce
Confidence 5443 899999988775321 11113445555 55 45555555 568999999998 9888887632 22345
Q ss_pred EEE
Q psy3053 884 VAW 886 (917)
Q Consensus 884 laf 886 (917)
++|
T Consensus 317 ~~~ 319 (328)
T 3dsm_A 317 FCW 319 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-11 Score=143.24 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=198.4
Q ss_pred CCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC--CCCCCccCCcceeee
Q psy3053 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG--ASWSHMKPSKSLVSQ 709 (917)
Q Consensus 632 pd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~--~~~~~~~~~~~~~~~ 709 (917)
+.+..+++...+++|.++|..+++.+..+... ..+..+.++||++++++++.|+.|.+||+. +. .....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--------~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--------TTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------CEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--------cEeEE
Confidence 34456677778999999999999999888643 356799999999999999999999999985 33 22223
Q ss_pred ccCCCceEEEEEe----CCCCEEEEEEC-CCeEEEEECCCCeeeEEecCC---------C-CCCeEEEEEecCCCEEE-E
Q psy3053 710 LDLDNRIKCLAIS----KDNNQLAVGTE-AGELIIWSLENHLMTQQLSDD---------I-NASVNGVLFSEDGCRVL-S 773 (917)
Q Consensus 710 ~~h~~~V~~l~~s----pdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~---------h-~~~V~~v~fspdg~~L~-s 773 (917)
.........++++ |+|+++++++. ++.+.++|..+.+.+..+... | ...+..+..++++..++ .
T Consensus 236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 3334557899999 69998887665 589999999999888876521 1 22678888998766544 4
Q ss_pred EeCCCeEEEEECCCCeE--EEEeecCCceEEEEEeCCCEE-E-EEeCCCeEEEEECCCCEEEEEEec-----CCC-ceEE
Q psy3053 774 CGNNCMLNVYDLTTGMQ--VCNKVFEEKLLCLSWAGEEKV-I-LGGALGMVYLVDLIQVQLLKQVRA-----HKD-AVLS 843 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~--i~~~~~~~~i~~l~~s~~~~l-v-~gs~dG~I~vwdl~~~~~i~~l~~-----h~~-~V~s 843 (917)
...+|.|.++|..+... +..+........+.|++++.. + +...++.|.++|+.+++.+..+.. |.+ .+.-
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 45679999999877543 333445556778899987753 3 344678999999999998877754 433 2232
Q ss_pred EeecCCEEE-EEe-CCCeEEEEECcC-------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEec
Q psy3053 844 LHFDNCTML-VGC-WDSCVVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGNL-------VGAPKLYAT 907 (917)
Q Consensus 844 is~dg~~La-sgs-~DG~I~Iwdl~t-------g~~l~~l~~h~~~V~slafSpdg~~LaSgs~-------DG~V~IWdl 907 (917)
+++++..+. ++. .++.|.++|..+ .+.++++......-..+..+|++++|.+... .++|.|+|+
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 467655444 443 468999999987 6788888765443344778999999998663 459999999
Q ss_pred Ccc
Q psy3053 908 EFY 910 (917)
Q Consensus 908 ~~~ 910 (917)
+..
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 755
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-11 Score=136.71 Aligned_cols=299 Identities=15% Similarity=0.101 Sum_probs=202.8
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccc---------cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSS---------MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~---------~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
++..+++++.++.|..+|..+|+.+....... ..+.+ ....++..+++++.++.|..+|..+|+......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 35678888889999999999999887665532 22222 222346678888999999999999999887766
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce------EEEEEeCCCCEEEEEECCC
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI------KCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V------~~l~~spdg~~Lasgs~dG 735 (917)
............ +..++.++.++.|..+|..++..... ......+ ...... +..+++++.+|
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~--------~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g 198 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWT--------VNLDMPSLSLRGESAPTTA--FGAAVVGGDNG 198 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE--------EECCC-----CCCCCCEEE--TTEEEECCTTT
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEE--------EeCCCCceeecCCCCcEEE--CCEEEEEcCCC
Confidence 543322222232 35788888999999999987731111 1111111 111222 45788888899
Q ss_pred eEEEEECCCCeeeEEecCCCCCC------eEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINAS------VNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~------V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~ 807 (917)
.+..+|..+++.+.......... +..+...| .+..+++++.++.+..+|..+|+.+....... ..++...+
T Consensus 199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~ 277 (376)
T 3q7m_A 199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDG 277 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEET
T ss_pred EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceEEC
Confidence 99999999998887765221100 00011111 34577888889999999999998887665433 44555554
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE-EE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC-VA 885 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s-la 885 (917)
+.+++++.+|.+..+|..+++.+..... ......+....+..|++++.+|.+.++|..+|+.+.........+.+ ..
T Consensus 278 -~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~ 356 (376)
T 3q7m_A 278 -NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPV 356 (376)
T ss_dssp -TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCE
T ss_pred -CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCE
Confidence 4888999999999999999998877652 22223333445788999999999999999999998877653333322 22
Q ss_pred EcCCCCEEEEEeCCCcEEEEe
Q psy3053 886 WDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 886 fSpdg~~LaSgs~DG~V~IWd 906 (917)
. .+..|+.++.+|.|..|+
T Consensus 357 ~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 A--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEEBTTSCEEEEE
T ss_pred E--ECCEEEEEeCCCEEEEEe
Confidence 2 256888899999999886
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-12 Score=137.07 Aligned_cols=218 Identities=10% Similarity=-0.001 Sum_probs=166.6
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-Cce
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAI 667 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~V 667 (917)
..++.|++++.++.|.+||.++|+.+.++..+. ..+.+++++|+|++++ +.++.|..||. +|+.+..+..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 346789999999999999999999999888765 4688999999999888 45788999999 899999888753 578
Q ss_pred eEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCccee-eeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q psy3053 668 SCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLV-SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~ 745 (917)
.++.+.++|+.+++.+. ++.|..+|.... .... .... ....+......++..++|+++++...++.|..||.. |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk-~l~~--~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGE-VLSK--TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSC-EEEE--EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCC-EEEE--EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 777877775322 0000 0000 000111234566789999999999999999999998 9
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-------CceEEEEEeCCCEEEEEeC
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-------EKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-------~~i~~l~~s~~~~lv~gs~ 816 (917)
+.+.++.. ...+.++...++|+.+++++.++.|..+|..+|+.+...... ..+..+...+++.+++++.
T Consensus 156 ~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 QLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99888873 245667888999999999988889999999999998776532 1155666666666665553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-12 Score=155.86 Aligned_cols=274 Identities=12% Similarity=-0.003 Sum_probs=175.1
Q ss_pred CCCCEEEEEecccE---EEEEEec-----cCeeeEEe------ccCCCceeEEEecCCCCEEEEEECC-----CeEEEEe
Q psy3053 632 PDNCTMLVGCWDSC---VVIYDVE-----CGRIVTEL------AGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWN 692 (917)
Q Consensus 632 pd~~~Lasgs~Dg~---I~Iwdl~-----tg~~i~~l------~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWd 692 (917)
|+|++++....++. -.+|... .++....+ .+|...+..++|||||++|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77877776654432 4445443 33322211 2344478899999999999887654 4699999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe--------------EEEEECCCCee--eEEec-CCC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE--------------LIIWSLENHLM--TQQLS-DDI 755 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~--------------I~iwDl~~~~~--~~~l~-~~h 755 (917)
+.++.. .....+...+..++|+|| +.|+.++.++. |++|++.++.. ..... ..+
T Consensus 196 l~tg~~--------~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 196 VADGKP--------LADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp TTTCCE--------EEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred CCCCCC--------CCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 988721 111111122357899999 99998887654 89999987652 22222 123
Q ss_pred CCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCC--e-EEEEeecCCceEEEEEeCCCEEEEEeC----CCeEEEE
Q psy3053 756 NASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTG--M-QVCNKVFEEKLLCLSWAGEEKVILGGA----LGMVYLV 823 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg--~-~i~~~~~~~~i~~l~~s~~~~lv~gs~----dG~I~vw 823 (917)
...+.++.|||||++|+..+.++ .|++||+.++ + ...............+...+.++..+. .+.|.+|
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 34588999999999998877544 8999999877 3 222222333333333333346666654 3569999
Q ss_pred ECCCC--EEEEEEecCCCceEEEee-cCCEEEEEeCCCeEEEEECc-CCeEEEEecC-CCCCEEEEEEcCCCCEEEEE--
Q psy3053 824 DLIQV--QLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDVE-CGRIVTELAG-HEDAISCVAWDEKRKRLISG-- 896 (917)
Q Consensus 824 dl~~~--~~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~-tg~~l~~l~~-h~~~V~slafSpdg~~LaSg-- 896 (917)
|+.++ .....+..+...+..+++ ++.+++++..||..++|.+. +++....+.. +.+.|..++++|+++.|+..
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 99874 344444555555666665 45567778889987777654 4666666664 36678999999998866632
Q ss_pred --eCCCcEEEEecCcceEEE
Q psy3053 897 --NLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 897 --s~DG~V~IWdl~~~ll~~ 914 (917)
...++|++||+.+.....
T Consensus 427 s~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 427 SFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp ETTEEEEEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEECCCCcEEE
Confidence 345789999998765443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=133.19 Aligned_cols=240 Identities=12% Similarity=0.085 Sum_probs=177.7
Q ss_pred CCCEEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec-
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL- 710 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~- 710 (917)
.+++|++++.|+.|.+||.++|+.+..+..+. ..+.+++++|+|+.++ +.++.|..||. ++. .+-...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------ELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------EEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------EEEEEcC
Confidence 46789999999999999999999999998876 5789999999999888 45788999998 441 111111
Q ss_pred cCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEecC-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLSD-----DINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~-----~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwD 784 (917)
+....+.++.+.++|+.+++.+. ++.+..+|. +++.+..+.. .+......++..++|+++++...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 22356889999999999999887 888888886 6776666541 1112455677899999999999999999999
Q ss_pred CCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCC------CceEEE--eecCCEEEEEe
Q psy3053 785 LTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHK------DAVLSL--HFDNCTMLVGC 855 (917)
Q Consensus 785 l~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~------~~V~si--s~dg~~Lasgs 855 (917)
.. |+.+........+.++...+++. +++++.++.|..+|..+++.+.++..+. ..+..+ .++|..+++..
T Consensus 153 ~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 153 PN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 98 99988888776677777777655 5555666789999999999999886432 124444 45788777764
Q ss_pred CC--------CeEEEEEC-cCCeEEEEecCCC--CCEEEE
Q psy3053 856 WD--------SCVVIYDV-ECGRIVTELAGHE--DAISCV 884 (917)
Q Consensus 856 ~D--------G~I~Iwdl-~tg~~l~~l~~h~--~~V~sl 884 (917)
.. +..+++++ .+|+.+.++..+. +.++++
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 21 23456665 5778887776543 345544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-12 Score=132.53 Aligned_cols=238 Identities=11% Similarity=-0.012 Sum_probs=163.9
Q ss_pred ceEEEEEeCCCcEEE-EEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 582 AITAVAICGEGISVA-SVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 582 ~Vtsv~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
...+++++++|+..+ +.+.++.|.+|+..++............+.+++++++++++++.. ++.|.+||..++......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 567899999998666 446788999999766543322222334578899999998666655 889999998765443222
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
......+.+++++++++.+++...++.|.+|+..+.. ...........+.+++++++|+++++...++.|.+|
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 2333678999999999877777778999999754431 111111223457889999999977777778899999
Q ss_pred ECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEE-EEeCCC
Q psy3053 741 SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVI-LGGALG 818 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv-~gs~dG 818 (917)
|..+........ .....+.+++++++|..+++...++.|.+||..+........ ....+.++++++++.++ +...++
T Consensus 177 ~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 177 EAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp CTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred ecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 988766544332 333678999999999777777778899999987654332221 12457888888766544 445678
Q ss_pred eEEEEECCCC
Q psy3053 819 MVYLVDLIQV 828 (917)
Q Consensus 819 ~I~vwdl~~~ 828 (917)
.|.++++...
T Consensus 256 ~v~~~~~~~~ 265 (270)
T 1rwi_B 256 RVVKLTSLEH 265 (270)
T ss_dssp EEEEECCCGG
T ss_pred EEEEEcCCCc
Confidence 8888887654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-11 Score=133.77 Aligned_cols=273 Identities=14% Similarity=0.073 Sum_probs=194.0
Q ss_pred EEeCCCCEEEEEec-----ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeC
Q psy3053 629 CILPDNCTMLVGCW-----DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNT 693 (917)
Q Consensus 629 ~~spd~~~Lasgs~-----Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl 693 (917)
...|+++.+.+... ++.|.+.|..+++.+..+..-..+ .++++|||+++++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 45688988888765 689999999999999988765555 499999999888775 3678999999
Q ss_pred CCCCCCccCCcceeee-cc------CCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCCCCCCeEEEEE
Q psy3053 694 GASWSHMKPSKSLVSQ-LD------LDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDDINASVNGVLF 764 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~-~~------h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~f 764 (917)
.+.. ..... .+ .......++++|||+++.++.. ++.|.++|+.+++.+.++..+ +. ...+
T Consensus 117 ~t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~--~~~~ 185 (386)
T 3sjl_D 117 VTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DC--YHIF 185 (386)
T ss_dssp TTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE--EEEE
T ss_pred CCCe-------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Cc--ceee
Confidence 8762 11111 11 1234667999999999988864 689999999999999988622 21 2233
Q ss_pred ecCCCEEEEEeCCCeEEEEECCC-CeEEEEee-cC----CceE-EEEEe-CCCEEEEEeCCCeEEEEECCCCE--EEEEE
Q psy3053 765 SEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKV-FE----EKLL-CLSWA-GEEKVILGGALGMVYLVDLIQVQ--LLKQV 834 (917)
Q Consensus 765 spdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~-~~----~~i~-~l~~s-~~~~lv~gs~dG~I~vwdl~~~~--~i~~l 834 (917)
....+.+++.+.||.+.+.++.+ ++...... .- ..+. ...|. +++.++..+.+|.|++.|..+.. .+..+
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 33556777888899999998876 55432111 10 1111 13554 67777778889999999997653 33333
Q ss_pred e------------cCCCceEEEeecCCEEEEEeC----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-
Q psy3053 835 R------------AHKDAVLSLHFDNCTMLVGCW----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK- 891 (917)
Q Consensus 835 ~------------~h~~~V~sis~dg~~Lasgs~----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~- 891 (917)
. .......+++++++.++.... .+.|.+.|+.+++.+..+..- ..+.++++++|++
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 344 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSC
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCe
Confidence 2 223345666888888877643 257999999999999888642 3688999999997
Q ss_pred EEEEE-eCCCcEEEEecCc-ceEEEE
Q psy3053 892 RLISG-NLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 892 ~LaSg-s~DG~V~IWdl~~-~ll~~L 915 (917)
+|+++ ..++.|.++|..+ ..+.++
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 67665 4589999999974 455554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-11 Score=129.82 Aligned_cols=239 Identities=10% Similarity=-0.049 Sum_probs=157.3
Q ss_pred ceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 624 TLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 624 ~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
...++++++++++.+ +.+.++.|.+|+..++........+...+.+++++++++.+++.. ++.|.+||..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence 457889999998777 547789999999766544332233445788999999988666555 88999999765411
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
..........+.+++++++|+++++...++.|.+|+..+........ .....+.+++++++|+.+++...++.|.+
T Consensus 100 ---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 100 ---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp ---EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred ---eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 11111223568899999999988777778899999876554333222 23346788999999987777667788999
Q ss_pred EECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 783 YDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 783 wDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
||..++......... ..+.++++ +++|...++...++.|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~---------------------------------------d~~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAV---------------------------------------DEAGTVYVTEHNTNQVV 216 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEE---------------------------------------CTTCCEEEEETTTSCEE
T ss_pred EecCCCceEeecccCCCCceEEEE---------------------------------------CCCCCEEEEECCCCcEE
Confidence 987755432111000 11222222 34555555555566777
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|+............+...+.+++++++|+.+++...++.|++++....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 217 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 7776544333222233456899999999998888889999999998754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-10 Score=121.81 Aligned_cols=274 Identities=6% Similarity=-0.062 Sum_probs=188.1
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee-eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS-AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.....+.+++++++|+..++...++.|.+|+.. ++.... +......+.++++.+++.+.++...++.|..+|.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678899999999987777778999999987 554331 22223567889999999877777668899999988 554
Q ss_pred eE-EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 657 VT-ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 657 i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
.. ........+.++++.++++..++...++.|..+|.. +. ............+.+++++++|++.++...++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT------IYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC------EEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC------EEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence 32 223344678999999999888877778899999876 31 01111122345788999999999766666678
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-e-cCCceEEEEEeCCCEEEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-V-FEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~-~~~~i~~l~~s~~~~lv~ 813 (917)
.|..+|. +++............+.+++++++|...++....+.|.++|. ++...... . ....+.++++++++.+.+
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 9999998 555443222234467899999999987777666788999998 55443321 1 235588999998887777
Q ss_pred EeC-CCeEEEEECCCCEEEE-EEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 814 GGA-LGMVYLVDLIQVQLLK-QVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 814 gs~-dG~I~vwdl~~~~~i~-~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
++. ++.|..+|. +++... .+......+.++ .++|++.++.. . .|..+|.
T Consensus 246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 764 589999998 454332 223233445555 45666555444 4 6666664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-10 Score=120.69 Aligned_cols=272 Identities=5% Similarity=-0.061 Sum_probs=189.6
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE-EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
.....++++.++++..++...++.|.+||.. ++... .+..+...+.++++.++++..++...++.|..+|.. +.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~--- 93 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG--- 93 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC---
Confidence 3456889999999888877778999999988 65443 233344678999999999887777668899999976 31
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
............+.+++++++|++.++...++.|..+|.. ++............+.++++.++|+..++...++.|
T Consensus 94 ---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 94 ---FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp ---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred ---eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 0111112234678999999999988877778899999987 555433222345678999999999966666667899
Q ss_pred EEEECCCCeEEEEe--ecCCceEEEEEeCCCEEEEEeC-CCeEEEEECCCCEEEEE-EecCCCceEEE--eecCCEEEEE
Q psy3053 781 NVYDLTTGMQVCNK--VFEEKLLCLSWAGEEKVILGGA-LGMVYLVDLIQVQLLKQ-VRAHKDAVLSL--HFDNCTMLVG 854 (917)
Q Consensus 781 ~iwDl~tg~~i~~~--~~~~~i~~l~~s~~~~lv~gs~-dG~I~vwdl~~~~~i~~-l~~h~~~V~si--s~dg~~Lasg 854 (917)
..+|. +++..... .....+.++++++++.+.++.. .+.|.++|. +++.... ...+...+.++ +++|+..++.
T Consensus 170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 99998 55544321 1234578899998877777665 568999998 5544332 33345556666 4567766666
Q ss_pred eCCCeEEEEECcCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 855 CWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 855 s~DG~I~Iwdl~tg~~l~-~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
..++.|..++. +++... .+......+.+++++++|...++.. . .|..++.
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 66789999998 454432 2333456688999999998666554 4 6666654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=149.73 Aligned_cols=275 Identities=12% Similarity=0.034 Sum_probs=177.8
Q ss_pred eCCCcEEEEEecCCc---eEEEecc-----CCceeeee------eccccceEEEEEeCCCCEEEEEecc-----cEEEEE
Q psy3053 589 CGEGISVASVGRDAM---LKIHSLK-----TGRQERSA------VLSSMTLSSLCILPDNCTMLVGCWD-----SCVVIY 649 (917)
Q Consensus 589 Spdg~~Lasgs~Dg~---I~IWd~~-----t~~~~~~~------~~~~~~V~sl~~spd~~~Lasgs~D-----g~I~Iw 649 (917)
+|+|++++....++. -.+|... .+.....+ ..+...+..++|||||++||.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 488988877665543 5666654 23222211 1122367889999999999987654 469999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCe--------------EEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCT--------------VRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt--------------I~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
|+.+|+.+... .+...+..++|+|| +.|+.++.|+. |.+|++.++... ...+.....+...
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA---DQPVFATPELPKR 269 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---CEEEECCTTCTTC
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---CEEEeccCCCCeE
Confidence 99999875532 12222467899999 99998887664 889998765210 0111111223335
Q ss_pred eEEEEEeCCCCEEEEEECCC-----eEEEEECCCC--eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC----CeEEEEE
Q psy3053 716 IKCLAISKDNNQLAVGTEAG-----ELIIWSLENH--LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN----CMLNVYD 784 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG-----~I~iwDl~~~--~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D----g~I~iwD 784 (917)
+..+.|+|||+.|+.++.++ .|.+||+.++ +....+. .+...+... ++|+|+.|+..+.+ +.|.+||
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 88999999999988877554 8999999877 3134444 233344444 35899988887764 4599999
Q ss_pred CCCC--eEEEEeec-CCceEEEEEeCCCEEEEEeCCCeEEEEECC-CCEEEEEEec-CCCceEEE--eecCCEEEEE-e-
Q psy3053 785 LTTG--MQVCNKVF-EEKLLCLSWAGEEKVILGGALGMVYLVDLI-QVQLLKQVRA-HKDAVLSL--HFDNCTMLVG-C- 855 (917)
Q Consensus 785 l~tg--~~i~~~~~-~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~-~~~~i~~l~~-h~~~V~si--s~dg~~Lasg-s- 855 (917)
+.++ ........ ...+..+++.++..+++...+|..++|... +++....+.. +.+.+..+ +++++.++.. +
T Consensus 348 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS 427 (741)
T ss_dssp CSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred CCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 9874 33322332 234667788866566777788876666543 4556666654 35566666 5677655532 2
Q ss_pred --CCCeEEEEECcCCeE
Q psy3053 856 --WDSCVVIYDVECGRI 870 (917)
Q Consensus 856 --~DG~I~Iwdl~tg~~ 870 (917)
..++|++||+.+++.
T Consensus 428 ~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 428 FTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 347899999988873
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-11 Score=132.82 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=194.5
Q ss_pred EEEeCCCcEEEEEec-----CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEE
Q psy3053 586 VAICGEGISVASVGR-----DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYD 650 (917)
Q Consensus 586 v~fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwd 650 (917)
....|+++.++.+.. ++.|.+.|..+++.+..+.....+ . ++++||++.+.+++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789988888765 679999999999999888876666 4 99999999887775 367899999
Q ss_pred eccCeeeEEeccCC-------CceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 651 VECGRIVTELAGHE-------DAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 651 l~tg~~i~~l~~H~-------~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
..+++.+..+.-.. .....++++|||++++.+.. +++|.++|+.+. .........+. ...+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~--------~vv~tI~v~g~--~~~~ 185 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--------AFKRMLDVPDC--YHIF 185 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT--------EEEEEEECCSE--EEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--------cEEEEEECCCc--ceee
Confidence 99999888775321 24567999999999998874 689999999876 22222222221 1223
Q ss_pred eCCCCEEEEEECCCeEEEEECCC-CeeeEEecC---CCCCCeE-EEEEe-cCCCEEEEEeCCCeEEEEECCCCe--EEEE
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLEN-HLMTQQLSD---DINASVN-GVLFS-EDGCRVLSCGNNCMLNVYDLTTGM--QVCN 793 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~-~~~~~~l~~---~h~~~V~-~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~--~i~~ 793 (917)
....+.+++.+.||.+.+.++.+ ++....... ....++. ...|. ++|++++ .+.+|.+++.|..++. ....
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 33446677888899998888876 554332210 1112221 24665 5775444 5668999999997664 2222
Q ss_pred ee-----------cCCceEEEEEeCC-CEEEEEeC----------CCeEEEEECCCCEEEEEEecCC-CceEEEeecCC-
Q psy3053 794 KV-----------FEEKLLCLSWAGE-EKVILGGA----------LGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNC- 849 (917)
Q Consensus 794 ~~-----------~~~~i~~l~~s~~-~~lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~- 849 (917)
.. ..+....++++++ +.+.+... .+.|.++|+.+++.+..+.... ..-..+++|++
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 344 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence 21 0122233555643 34444432 2579999999999998886432 22344488986
Q ss_pred EEEEEe-CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 850 TMLVGC-WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 850 ~Lasgs-~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
.|+++. .++.|.++|..+++.+.++..-. .-..|.+++|
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCceeEECCc
Confidence 666654 58999999999999999886432 2244566655
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-10 Score=123.66 Aligned_cols=272 Identities=10% Similarity=-0.043 Sum_probs=185.3
Q ss_pred EeCCCcEEEEEec--CC---ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEec
Q psy3053 588 ICGEGISVASVGR--DA---MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVE 652 (917)
Q Consensus 588 fSpdg~~Lasgs~--Dg---~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~ 652 (917)
..|++++++++.. .. +|.++|..+++.+..+.....+ .++++||++.++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777766653 22 7899999999988777665544 899999999998886 36789999999
Q ss_pred cCeeeEEeccC-------CCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEe
Q psy3053 653 CGRIVTELAGH-------EDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAIS 722 (917)
Q Consensus 653 tg~~i~~l~~H-------~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s 722 (917)
+++.+..+.-. ......++++|||++|+.++. +++|.++| .++ ..... ..... |+.+.
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~--------~~~~~~i~~~~---~~~~~ 173 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG--------SSDDQLLSSPT---CYHIH 173 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC--------CEEeEEcCCCc---eEEEE
Confidence 98887766422 123458999999999998874 47899999 776 22222 22222 34555
Q ss_pred CCC-CEEEEEECCCeEEEEECCCCeeeEEecC----CCCCC-eEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEe
Q psy3053 723 KDN-NQLAVGTEAGELIIWSLENHLMTQQLSD----DINAS-VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNK 794 (917)
Q Consensus 723 pdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~----~h~~~-V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~ 794 (917)
|++ +.+++.+.||.+.++|. +++....... ....+ .....+.+++..++..+.++.+.+.|+.++. .+..+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 655 45667778999999999 7776633210 11112 2335567776666655678899999987653 22222
Q ss_pred ec-----------CCceEEEEEeCCC-EEEEEeC----------CCeEEEEECCCCEEEEEEecCC-CceEEEeecCC-E
Q psy3053 795 VF-----------EEKLLCLSWAGEE-KVILGGA----------LGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNC-T 850 (917)
Q Consensus 795 ~~-----------~~~i~~l~~s~~~-~lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~-~ 850 (917)
.. ......+.+++++ .+.++.. .+.|.++|..+++.+.++.... ..-..+++||+ .
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD 332 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeE
Confidence 11 1223335666653 3444332 3689999999999999886433 33344588999 7
Q ss_pred EEEEe-CCCeEEEEECcCCeEEEEe
Q psy3053 851 MLVGC-WDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 851 Lasgs-~DG~I~Iwdl~tg~~l~~l 874 (917)
++++. .++.|.++|..+++.+..+
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEeee
Confidence 77777 5899999999999998884
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-10 Score=125.66 Aligned_cols=270 Identities=10% Similarity=-0.027 Sum_probs=180.0
Q ss_pred eCCCCEEEEEec--cc---EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeCCC
Q psy3053 631 LPDNCTMLVGCW--DS---CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNTGA 695 (917)
Q Consensus 631 spd~~~Lasgs~--Dg---~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl~~ 695 (917)
.|+++.+.+... .+ .|.++|..+++.+..+.....+ .++++||+++++.+. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 366666666543 22 8899999999998888754444 999999999999886 367899999876
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEE-ecCCCCCCeEEEEEecCC-CEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQ-LSDDINASVNGVLFSEDG-CRV 771 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~-l~~~h~~~V~~v~fspdg-~~L 771 (917)
.......................++++|+|+++++++. ++.|.++| .+++.+.. +. ..+ ++.+.|++ +.+
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTF 180 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceE
Confidence 52100000000000001133558999999999998874 47899999 99988877 65 222 24555655 455
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee-----c-CCce-EEEEEeC-CCEEEEEeCCCeEEEEECCCCE--EEEEEec-----
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKV-----F-EEKL-LCLSWAG-EEKVILGGALGMVYLVDLIQVQ--LLKQVRA----- 836 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~-----~-~~~i-~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~----- 836 (917)
++.+.||.+.++|. +++...... . ..++ ....+.+ .+.++..+..+.+.+.|+.... .+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 67778999999999 877663322 1 1111 1122222 2344444578899999997552 2333321
Q ss_pred -------CCCceEEEeecCCEEEEEeC----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-
Q psy3053 837 -------HKDAVLSLHFDNCTMLVGCW----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGN- 897 (917)
Q Consensus 837 -------h~~~V~sis~dg~~Lasgs~----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~-~LaSgs- 897 (917)
.......++++++.++++.. ++.|.++|..+++.+.++.. .....+++|+|||+ .++++.
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcC
Confidence 11112455788888777653 35799999999999998863 33578999999999 788877
Q ss_pred CCCcEEEEecCcc
Q psy3053 898 LVGAPKLYATEFY 910 (917)
Q Consensus 898 ~DG~V~IWdl~~~ 910 (917)
.++.|.+||+.+.
T Consensus 339 ~~~~V~ViD~~t~ 351 (373)
T 2mad_H 339 GTEVLHIYDAGAG 351 (373)
T ss_pred CCCeEEEEECCCC
Confidence 5899999999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-10 Score=125.95 Aligned_cols=241 Identities=9% Similarity=0.051 Sum_probs=165.4
Q ss_pred CCCceeEEEecCCCCEEEE-------EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECC
Q psy3053 663 HEDAISCVAWDEKRKRLIS-------GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEA 734 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~S-------gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~d 734 (917)
.-....+++|++++..+++ ++.++.|.+||..++..... ......++...+.+++++++ |+++++ +..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---CKPEVNGYGGIPAGCQCDRDANQLFVA-DMR 91 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE---ECCEETTEECCEEEEEECSSSSEEEEE-ETT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE---EecccCCCCCCCceEEEecCCCcEEEE-ECC
Confidence 3345689999999988887 57789999999766521000 00000123456899999999 664544 445
Q ss_pred CeEEEEECCCCeeeEE-ecC---CCCCCeEEEEEecCCCEEEEEeCC---------------CeEEEEECCCCeEEEEee
Q psy3053 735 GELIIWSLENHLMTQQ-LSD---DINASVNGVLFSEDGCRVLSCGNN---------------CMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~-l~~---~h~~~V~~v~fspdg~~L~s~s~D---------------g~I~iwDl~tg~~i~~~~ 795 (917)
+.|.+||.. ++.... ... .....+.+++++++|+..++...+ +.|..+|.. ++......
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 579999998 665433 221 122458899999999887777655 578888876 55444333
Q ss_pred cCCceEEEEEe----CCC-EEEEE-eCCCeEEEEECC-CCEE-----EEEEecCC-CceEEE--eecCCEEEEEeCCCeE
Q psy3053 796 FEEKLLCLSWA----GEE-KVILG-GALGMVYLVDLI-QVQL-----LKQVRAHK-DAVLSL--HFDNCTMLVGCWDSCV 860 (917)
Q Consensus 796 ~~~~i~~l~~s----~~~-~lv~g-s~dG~I~vwdl~-~~~~-----i~~l~~h~-~~V~si--s~dg~~Lasgs~DG~I 860 (917)
.......++++ +++ .++++ ..++.|.+||.. +++. ...+.++. ..+..+ +++|++.++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 34456788898 887 45444 467899999986 4542 22333333 445555 5678888887788999
Q ss_pred EEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCc
Q psy3053 861 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGNLVGAPKLYATEF 909 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La-Sgs~DG~V~IWdl~~ 909 (917)
.+||..+++.+..+..+...+.+++++|+|+.|+ +...++.|..|+++.
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999987777777776778899999999999555 445678899999864
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=133.09 Aligned_cols=301 Identities=12% Similarity=0.030 Sum_probs=200.9
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccC
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 663 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H 663 (917)
.+..+..+| .++.++.++.|..|| .+++...........+.++...+++. +.+++.+ +..+|. +++....+...
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~ 96 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK 96 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC
Confidence 344455565 466677888999999 88888776666555566777766665 4555544 888885 56555444433
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
.......... +..+..++.++.|..+|.. +. ...........+.++...+++. +.+|+.++.|..+|..
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCcccCceEE--CCEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 3333333443 4678888889999999976 41 1111122333455666676766 6667888999999998
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
++...... .....+.++...++|...+. + +.+..+| .+++........ ..+.++..++++.+.+++.++.+..
T Consensus 166 -g~~~~~~~-~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 166 -GTEKWRFK-TNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp -SCEEEEEE-CSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred -CCEeEEEe-cCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 77766665 33456677777778765544 4 7899999 777666554433 4577788888889999999999999
Q ss_pred EECCCCEEEEEEecCCCceEEEeec-CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3053 823 VDLIQVQLLKQVRAHKDAVLSLHFD-NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGA 901 (917)
Q Consensus 823 wdl~~~~~i~~l~~h~~~V~sis~d-g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~ 901 (917)
+|. +++.+..+......+.++..+ +..|..++.+|.|..+|. +++.+.........+.++..+++|. |..|+.+|.
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~ 316 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGK 316 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSC
T ss_pred ECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCe
Confidence 974 566666665443333333333 556788888989999996 6777777665566677788877775 566889999
Q ss_pred EEEEecCcc
Q psy3053 902 PKLYATEFY 910 (917)
Q Consensus 902 V~IWdl~~~ 910 (917)
+++...+..
T Consensus 317 ~~~~~~~~~ 325 (330)
T 3hxj_A 317 FYALFNLEH 325 (330)
T ss_dssp EEEEEC---
T ss_pred EEEEecccc
Confidence 998877643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-10 Score=122.07 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=162.0
Q ss_pred CcceEEEEEeCCCcEEEE-------EecCCceEEEeccCCceeeeee----ccccceEEEEEeCC-CCEEEEEecccEEE
Q psy3053 580 KEAITAVAICGEGISVAS-------VGRDAMLKIHSLKTGRQERSAV----LSSMTLSSLCILPD-NCTMLVGCWDSCVV 647 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Las-------gs~Dg~I~IWd~~t~~~~~~~~----~~~~~V~sl~~spd-~~~Lasgs~Dg~I~ 647 (917)
-....+++|+++|..+++ +..++.|.+|+..+++...... .+...+.+++++++ ++++++ +..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence 345678999999987777 5778999999988776543221 14456889999999 655544 4445799
Q ss_pred EEEeccCeeeEE-ecc----CCCceeEEEecCCCCEEEEEECC---------------CeEEEEeCCCCCCCccCCccee
Q psy3053 648 IYDVECGRIVTE-LAG----HEDAISCVAWDEKRKRLISGSWD---------------CTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 648 Iwdl~tg~~i~~-l~~----H~~~Vt~l~~spd~~~L~Sgs~D---------------gtI~vWdl~~~~~~~~~~~~~~ 707 (917)
+||.+ ++.... ... ....+.+++++++++..++.+.+ +.|..|+.. + ...
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~ 165 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G--------QMI 165 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--------CEE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C--------CEE
Confidence 99988 765433 221 12458899999999888777655 466666654 2 111
Q ss_pred eeccCCCceEEEEEe----CCCCEEEEE-ECCCeEEEEECC-CCee-----eEEecCCCC-CCeEEEEEecCCCEEEEEe
Q psy3053 708 SQLDLDNRIKCLAIS----KDNNQLAVG-TEAGELIIWSLE-NHLM-----TQQLSDDIN-ASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 708 ~~~~h~~~V~~l~~s----pdg~~Lasg-s~dG~I~iwDl~-~~~~-----~~~l~~~h~-~~V~~v~fspdg~~L~s~s 775 (917)
....+......++++ ++++.+.++ ..++.|.+||+. +++. ...+. .+. ..+..++++++|+..++..
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEc
Confidence 112223456789999 999766555 567899999976 4432 22222 222 5678899999999888888
Q ss_pred CCCeEEEEECCCCeEEEEeecC-CceEEEEEeCCCE-EEEEe-CCCeEEEEECCC
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFE-EKLLCLSWAGEEK-VILGG-ALGMVYLVDLIQ 827 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~-~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~~ 827 (917)
.++.|.+||..+++........ ..+.++++++++. +++++ .++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999999867655444443 5688889887765 55544 457888888754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-10 Score=126.72 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=187.4
Q ss_pred CCCcEEEEEecC-----CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccC
Q psy3053 590 GEGISVASVGRD-----AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECG 654 (917)
Q Consensus 590 pdg~~Lasgs~D-----g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg 654 (917)
++++.++++... +.|.+.|..+++.+..+.....+ .++++||++.++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 456666655542 69999999999999998877776 899999999888876 4778999999999
Q ss_pred eeeEEeccC-------CCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 655 RIVTELAGH-------EDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 655 ~~i~~l~~H-------~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+.+..+.-- ......++++|||++++.+.. +++|.+.|+.+. .......... +....|++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~--------kvv~~I~v~g---~~~~~p~g 228 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK--------TFDRMLDVPD---CYHIFPAS 228 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT--------EEEEEEECCS---EEEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC--------eEEEEEEcCC---ceeeccCC
Confidence 988876421 133567899999999999874 578999999876 2222222111 12334433
Q ss_pred -CEEEEEECCCeEEEEECCCCeeeEE----ecCCCCCC-eEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE--eec-
Q psy3053 726 -NQLAVGTEAGELIIWSLENHLMTQQ----LSDDINAS-VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVF- 796 (917)
Q Consensus 726 -~~Lasgs~dG~I~iwDl~~~~~~~~----l~~~h~~~-V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~--~~~- 796 (917)
..+++.+.||.+.+.+..+++.... +. ....+ ...+.+++++..++..+..+.+.+.|..++..... ...
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~-v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFH-TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCS-CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeec-cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 5566677788888888766554432 11 11112 12356799999888888889999999876543211 110
Q ss_pred ----------CCceEEEEEeCC-CEEEEEeC----------CCeEEEEECCCCEEEEEEecCC-CceEEEeecCC-EEEE
Q psy3053 797 ----------EEKLLCLSWAGE-EKVILGGA----------LGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNC-TMLV 853 (917)
Q Consensus 797 ----------~~~i~~l~~s~~-~~lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~-~Las 853 (917)
......++++++ +.+++... ++.|.++|..+++.+.++.... ..-..+++||+ .+++
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEE
Confidence 111112566654 34444432 3579999999999999886432 23334488999 8888
Q ss_pred Ee-CCCeEEEEECcCCeEEEEe
Q psy3053 854 GC-WDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 854 gs-~DG~I~Iwdl~tg~~l~~l 874 (917)
+. .++.|.++|+.+++.+.++
T Consensus 388 ~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 388 LSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EETTTTEEEEEETTTCCEEEEE
T ss_pred EcCCCCeEEEEECCCCCEEEEe
Confidence 88 5899999999999999887
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-10 Score=133.96 Aligned_cols=301 Identities=13% Similarity=0.097 Sum_probs=197.5
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc----------e-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT----------L-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~----------V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
+..|++++.++.|..+|..+|+.+.+....... + ..+++ ++..|++++.|+.|..+|..+|+.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557788888999999999999998776543211 0 11122 4568888999999999999999998776
Q ss_pred ccC--CCceeEEEecC---CCCEEEEEE------CCCeEEEEeCCCCCCCccCCc----ceee-----e-----------
Q psy3053 661 AGH--EDAISCVAWDE---KRKRLISGS------WDCTVRVWNTGASWSHMKPSK----SLVS-----Q----------- 709 (917)
Q Consensus 661 ~~H--~~~Vt~l~~sp---d~~~L~Sgs------~DgtI~vWdl~~~~~~~~~~~----~~~~-----~----------- 709 (917)
... ......+..+| ++ .++.++ .+|.|..||..++........ .... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111122 44 444443 378999999988742211000 0000 0
Q ss_pred ----ccCCCceEEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCeeeEEecCC-CC-------CC
Q psy3053 710 ----LDLDNRIKCLAISKDNNQLAVGTEAGE-------------------LIIWSLENHLMTQQLSDD-IN-------AS 758 (917)
Q Consensus 710 ----~~h~~~V~~l~~spdg~~Lasgs~dG~-------------------I~iwDl~~~~~~~~l~~~-h~-------~~ 758 (917)
.+.......++++|++..+++++.++. |..+|..+|+.+..+... |. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 011111236788999999999988764 999999999998877632 21 12
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc------------------------------------
Q psy3053 759 VNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK------------------------------------ 799 (917)
Q Consensus 759 V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~------------------------------------ 799 (917)
........+|+ .++.++.+|.++++|..+|+.+........
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222333665 788899999999999999998854332210
Q ss_pred ----eEEEEEeCC-CEEEEEeC---------------------------------------------CCeEEEEECCCCE
Q psy3053 800 ----LLCLSWAGE-EKVILGGA---------------------------------------------LGMVYLVDLIQVQ 829 (917)
Q Consensus 800 ----i~~l~~s~~-~~lv~gs~---------------------------------------------dG~I~vwdl~~~~ 829 (917)
-..++++|+ +.+++... +|.|..||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 011466654 34444321 3789999999999
Q ss_pred EEEEEecCCCceE-EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC-EEEEEEcCCCCEEEE
Q psy3053 830 LLKQVRAHKDAVL-SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-ISCVAWDEKRKRLIS 895 (917)
Q Consensus 830 ~i~~l~~h~~~V~-sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~-V~slafSpdg~~LaS 895 (917)
.+.+...+..... .++..+..+++|+.||.++.||.++|+.+.++....+. ..-+.|+.+|+..++
T Consensus 467 ~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 467 AAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9888876543222 44668889999999999999999999999988754332 234667788875443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-10 Score=135.21 Aligned_cols=300 Identities=14% Similarity=0.101 Sum_probs=199.8
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc-----------eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT-----------LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~-----------V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
+..|+.++.++.|..+|..+|+.+.+....... ...+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 556777888899999999999988776543210 112222 4668888999999999999999998887
Q ss_pred ccC-C----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCcceee--------------------
Q psy3053 661 AGH-E----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSKSLVS-------------------- 708 (917)
Q Consensus 661 ~~H-~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~~~~-------------------- 708 (917)
..+ . ..+.+ ... .+..++.++. +|.|..+|..++............
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 2 12221 111 2345555543 799999999887422110000000
Q ss_pred -----eccCCCceEEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCeeeEEecCCCC--------
Q psy3053 709 -----QLDLDNRIKCLAISKDNNQLAVGTEAG-------------------ELIIWSLENHLMTQQLSDDIN-------- 756 (917)
Q Consensus 709 -----~~~h~~~V~~l~~spdg~~Lasgs~dG-------------------~I~iwDl~~~~~~~~l~~~h~-------- 756 (917)
..+.......+++++++..+++++.++ .|..+|..+|+.+..+...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 001112224678899999999887764 599999999999888763221
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCC-----------c-e---------------------
Q psy3053 757 ASVNGVLFSEDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-----------K-L--------------------- 800 (917)
Q Consensus 757 ~~V~~v~fspdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-----------~-i--------------------- 800 (917)
.....+....+| ..+++++.+|.++++|..+|+.+....... . +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 222333444477 678899999999999999999987655321 0 0
Q ss_pred ---EEEEEeCC-CEEEEEeC-------------------------------------------CCeEEEEECCCCEEEEE
Q psy3053 801 ---LCLSWAGE-EKVILGGA-------------------------------------------LGMVYLVDLIQVQLLKQ 833 (917)
Q Consensus 801 ---~~l~~s~~-~~lv~gs~-------------------------------------------dG~I~vwdl~~~~~i~~ 833 (917)
..++++++ +.+++... .|.|..||+.+++.+.+
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 13566764 45555432 27899999999999888
Q ss_pred EecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC-CEEEEEEcCCCCEEEE
Q psy3053 834 VRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED-AISCVAWDEKRKRLIS 895 (917)
Q Consensus 834 l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~-~V~slafSpdg~~LaS 895 (917)
........ ..+..++..+++++.||.+++||..+|+.+..+....+ ...-+.+..+|+..++
T Consensus 473 ~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 473 VEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 76432211 23466888999999999999999999999998874432 2234556778875544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-09 Score=120.63 Aligned_cols=235 Identities=14% Similarity=0.087 Sum_probs=158.8
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc--EEEEEEeccCeeeE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS--CVVIYDVECGRIVT 658 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg--~I~Iwdl~tg~~i~ 658 (917)
.....++++++|+++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.+++..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 357789999999977777778999999998776655444332 233 89999999998888766 89999988765544
Q ss_pred Ee----ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee---eccCCCce--EEEEEeCC-CCEE
Q psy3053 659 EL----AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS---QLDLDNRI--KCLAISKD-NNQL 728 (917)
Q Consensus 659 ~l----~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~---~~~h~~~V--~~l~~spd-g~~L 728 (917)
.+ ..+...+.+++++|++..|+.+..++.|..||..++.. .... ..+....- ..++++|+ +.++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~------~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV------TLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE------EEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE------EEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 44 22456788999999655666677789999999876521 1110 11111111 38999995 5666
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCC--------------CCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDI--------------NASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h--------------~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~ 793 (917)
++-..++.|..|+.... ...+.... -.....++++++|+++++-. .++.|+.|+..++.....
T Consensus 283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 66667789999997654 22222111 23578999999999777777 789999999888865443
Q ss_pred eec---------------CCceEEEEEeCCCEEEEEe-CCCeEEEEEC
Q psy3053 794 KVF---------------EEKLLCLSWAGEEKVILGG-ALGMVYLVDL 825 (917)
Q Consensus 794 ~~~---------------~~~i~~l~~s~~~~lv~gs-~dG~I~vwdl 825 (917)
... -.....+++++++.++++. .++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 332 1236677777766555443 3455655543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=130.20 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=136.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCc---------e--eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGR---------Q--ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---------~--~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
++..+++++.+.++++|+.++ +.+|++++.+ . ..... ... |+.++| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999885 5569876443 1 12222 344 999999 89999999 889999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.+.........|...+.++.+.+. .+++++.||+|.+||+.++. .. .+...|+|++|||+| ++.
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~--------~~---~~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS--------TK---QLAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC--------EE---EEEESEEEEEECSSE--EEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc--------cc---cccCCceEEEEcCCc--eEE
Confidence 9887666667778888998887754 38999999999999998652 11 134589999999999 788
Q ss_pred EECCCeEEEEECCCCee--eEEec------C--CCCCCeEEEEEecCCCEEEEEe
Q psy3053 731 GTEAGELIIWSLENHLM--TQQLS------D--DINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~--~~~l~------~--~h~~~V~~v~fspdg~~L~s~s 775 (917)
|..||.+.+|+...+.. ...+. . +|...|.++.|.+++.++++-+
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999999988775 45552 1 3678899999999998888643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-09 Score=116.75 Aligned_cols=264 Identities=12% Similarity=0.063 Sum_probs=178.2
Q ss_pred CCCEEEEEecccEEEEEEeccCeeeEEeccC---------CCcee-EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGH---------EDAIS-CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H---------~~~Vt-~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
++..+++++.++.|..+|.++|+.+...... ...+. .+.. ++..++.++.++.|..+|..++....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W-- 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAW-- 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE--
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEE--
Confidence 3567788888999999999999988766542 12232 2222 45678889999999999998773111
Q ss_pred CcceeeeccCCCce-EEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCC----eEEEEEecCCCEEEEEeCC
Q psy3053 703 SKSLVSQLDLDNRI-KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS----VNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 703 ~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~----V~~v~fspdg~~L~s~s~D 777 (917)
.......+ ...... +..+++++.+|.+..+|..+++.+.......... ....... +..+++++.+
T Consensus 128 ------~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~ 197 (376)
T 3q7m_A 128 ------QTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDN 197 (376)
T ss_dssp ------EEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTT
T ss_pred ------EEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCC
Confidence 11111111 111222 4578888999999999999999887775221100 0112222 4467788889
Q ss_pred CeEEEEECCCCeEEEEeecCCc-----------e-EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe
Q psy3053 778 CMLNVYDLTTGMQVCNKVFEEK-----------L-LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH 845 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~~~~~-----------i-~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis 845 (917)
+.+..+|..+|+.+........ + ...... ++.+++++.+|.+..+|..+++.+..... ....++.
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~ 274 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI 274 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence 9999999999998876654321 1 111122 45888899999999999999998866542 3345566
Q ss_pred ecCCEEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 846 FDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 846 ~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
.++..+++++.+|.|..+|..+|+.+..... ....+.+... .+..|+.++.+|.|.++|.++ ..+...
T Consensus 275 ~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 275 VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 6788899999999999999999998877652 2222222333 356888999999999999764 455443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=133.09 Aligned_cols=244 Identities=13% Similarity=0.052 Sum_probs=158.1
Q ss_pred cCCCceeEEEecCCCCEEEEEE-----CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 662 GHEDAISCVAWDEKRKRLISGS-----WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs-----~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+|...+..++|||||++|+-+. .+.+|++||+.++. .............++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--------~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--------PLETPLKDVKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--------EEEEEEEEEESCCCEEE-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--------CCccccCCceeccEEEe-CCCEEEEEEecCc
Confidence 3556788999999999888432 33579999998872 11111111113567899 9999999887743
Q ss_pred -------------EEEEECCCCee--eEEecC-C-CCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCC--eEEEE
Q psy3053 737 -------------LIIWSLENHLM--TQQLSD-D-INASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTG--MQVCN 793 (917)
Q Consensus 737 -------------I~iwDl~~~~~--~~~l~~-~-h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg--~~i~~ 793 (917)
|++|++.++.. ...... . +...+.++.|+|||++|+.... ++.++++|+.++ .....
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 99999987643 222221 2 3445788999999998865543 248999999766 33322
Q ss_pred eecCCceEE-EEEeCCCEEEEEeCC---CeEEEEECCCCEE--EEEEecCCCceEEEeecCCEEEEEeC-CC--eEEEEE
Q psy3053 794 KVFEEKLLC-LSWAGEEKVILGGAL---GMVYLVDLIQVQL--LKQVRAHKDAVLSLHFDNCTMLVGCW-DS--CVVIYD 864 (917)
Q Consensus 794 ~~~~~~i~~-l~~s~~~~lv~gs~d---G~I~vwdl~~~~~--i~~l~~h~~~V~sis~dg~~Lasgs~-DG--~I~Iwd 864 (917)
......... +...++..++.+..+ +.|..+|+.++.. ...+..|...+..++++++.|+.... +| .|++|+
T Consensus 277 ~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 277 QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred eCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEE
Confidence 223333333 333344233444333 6899999987653 23455555444488999988776655 44 688999
Q ss_pred CcCCeEEEEec-CCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcceEEEE
Q psy3053 865 VECGRIVTELA-GHEDAISCVAWDEKRKRLISGNLV----GAPKLYATEFYLLYVL 915 (917)
Q Consensus 865 l~tg~~l~~l~-~h~~~V~slafSpdg~~LaSgs~D----G~V~IWdl~~~ll~~L 915 (917)
+..+. ...+. .+.+.+..+.++++++.|+....+ +.+..||+.+.....+
T Consensus 357 ~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 357 YEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp TTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred CCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 88554 44443 345568888889988877765544 8899999876654444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-08 Score=109.42 Aligned_cols=223 Identities=10% Similarity=0.042 Sum_probs=152.2
Q ss_pred CCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 663 HEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 663 H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
+..-..+..|++++. .+++...++.|..||..++. . ........+.+++++++|+++++ . ++.|.+||
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--------~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--------V-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------E-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--------E-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEE
Confidence 444566889998544 55666678999999987651 1 12234567999999999995554 4 56799999
Q ss_pred CCCCeeeEEecC---CCCCCeEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCceEEEEEeC
Q psy3053 742 LENHLMTQQLSD---DINASVNGVLFSEDGCRVLSCGN-----------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 742 l~~~~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~-----------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~ 807 (917)
..+++....... .....+++++++|+|++.++... .+.|..++.. ++.............++|++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcC
Confidence 988765433321 12345789999999997665432 2344445543 34333333334567899998
Q ss_pred CCE-E-EEEeCCCeEEEEEC--CCCEE-----EEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecC
Q psy3053 808 EEK-V-ILGGALGMVYLVDL--IQVQL-----LKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 808 ~~~-l-v~gs~dG~I~vwdl--~~~~~-----i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~ 876 (917)
++. + ++.+.++.|.+|++ .++.. ...+..+......+ +++|++.++...++.|..||..+++.+..+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 774 4 45556789999987 45543 22222233445555 56788777777788999999999999999988
Q ss_pred CCCCEEEEEEc-CCCCEEEEEe
Q psy3053 877 HEDAISCVAWD-EKRKRLISGN 897 (917)
Q Consensus 877 h~~~V~slafS-pdg~~LaSgs 897 (917)
+...+++++|. |+++.|+.++
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCceEEEEeCCCCCEEEEEc
Confidence 77889999998 8888776554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-08 Score=116.79 Aligned_cols=232 Identities=13% Similarity=0.060 Sum_probs=161.1
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC--eEEEEEC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG--ELIIWSL 742 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG--~I~iwDl 742 (917)
.....++|+++++.+++...++.|++||..++ .+........... ++|+++++.+++++.++ .|..++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence 46789999999987777777899999998765 2222222233334 99999999998888766 7999998
Q ss_pred CCCeeeEEe---cCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE----eecC-Cce-E-EEEEeC-CCEE
Q psy3053 743 ENHLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN----KVFE-EKL-L-CLSWAG-EEKV 811 (917)
Q Consensus 743 ~~~~~~~~l---~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~----~~~~-~~i-~-~l~~s~-~~~l 811 (917)
..+.....+ .......+.+++++|++..|+++..++.|+.||..++..... .... ... . .+++++ ++.+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 766543333 112456778999999555666677788999999987754322 1111 111 2 899998 4666
Q ss_pred EEE-eCCCeEEEEECCCCEEEEEEecCC---------------CceEEE--eecCCEEEEEe-CCCeEEEEECcCCeEEE
Q psy3053 812 ILG-GALGMVYLVDLIQVQLLKQVRAHK---------------DAVLSL--HFDNCTMLVGC-WDSCVVIYDVECGRIVT 872 (917)
Q Consensus 812 v~g-s~dG~I~vwdl~~~~~i~~l~~h~---------------~~V~si--s~dg~~Lasgs-~DG~I~Iwdl~tg~~l~ 872 (917)
+++ ...+.|+.|+.... +..+.++. .....+ +++|+++++-+ .++.|+.|++.++...
T Consensus 282 yv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~- 358 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS- 358 (409)
T ss_dssp EEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-
T ss_pred EEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-
Confidence 555 45689999987654 33333332 224444 66888777777 7899999998778743
Q ss_pred EecCC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 873 ELAGH---------------EDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 873 ~l~~h---------------~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.++ -.....++++++|.++++-..++.|+.++++
T Consensus 359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 34333 2458999999998888888888899888764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-09 Score=121.04 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=177.9
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEe----------cCCceEEEeccCCceeeeeecc-------ccceEEEEEeC
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVG----------RDAMLKIHSLKTGRQERSAVLS-------SMTLSSLCILP 632 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~~~~~-------~~~V~sl~~sp 632 (917)
.+.+..+..-..+ .+++||||++++++. .++.|.++|..+++.+..+... ...-..++++|
T Consensus 109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp 186 (426)
T 3c75_H 109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP 186 (426)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence 3445555544455 899999999888876 4678999999999988877643 22345788999
Q ss_pred CCCEEEEEec--ccEEEEEEeccCeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeee
Q psy3053 633 DNCTMLVGCW--DSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 633 d~~~Lasgs~--Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
||++++++.. ++.|.+.|+.+++.+..+.--. +....|+ ...+++.+.||.+.+.+..++....... ... .
T Consensus 187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~-~ 260 (426)
T 3c75_H 187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVF-H 260 (426)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCC-S
T ss_pred CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eee-c
Confidence 9999999874 5889999999999988876421 1223332 2566777788888888874331100000 000 0
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeE--EecC--C-------CCCCeEEEEEecCCCEEEEEeC--
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ--QLSD--D-------INASVNGVLFSEDGCRVLSCGN-- 776 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~--~l~~--~-------h~~~V~~v~fspdg~~L~s~s~-- 776 (917)
.+.......+.+.+++..++..+..|.+.+.|+....... .+.. . .......++++|+++.++++..
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 0001111235678898888888888999999987654221 1110 0 0112234789999988777642
Q ss_pred --------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE--EEEEe-CCCeEEEEECCCCEEEEEE
Q psy3053 777 --------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK--VILGG-ALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 777 --------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~--lv~gs-~dG~I~vwdl~~~~~i~~l 834 (917)
++.|.++|..+++.+..+........+.+++++. ++++. .++.|.++|+.+++.++++
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999999988888889999998765 55665 4899999999999999987
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-08 Score=108.20 Aligned_cols=219 Identities=11% Similarity=0.012 Sum_probs=147.8
Q ss_pred ceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 666 AISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 666 ~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
...+.+|+|++. .+++...++.|..||..++. .. .......+.+++++++|+++++. .+ .|.+||..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--------~~-~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR--------KT-VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--------EE-EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--------EE-EEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 346778999754 55666678899999987651 11 12234679999999999877654 44 499999988
Q ss_pred CeeeEEecCC---CCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EE-E
Q psy3053 745 HLMTQQLSDD---INASVNGVLFSEDGCRVLSCGN------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VI-L 813 (917)
Q Consensus 745 ~~~~~~l~~~---h~~~V~~v~fspdg~~L~s~s~------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv-~ 813 (917)
++........ ....+.+++++|+|++.++... .+.|..++ +++.............++|++++. ++ +
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 8754332211 1246889999999987665542 25666677 565443333334567899998874 43 4
Q ss_pred EeCCCeEEEEECC--CC-E-----EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 814 GGALGMVYLVDLI--QV-Q-----LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 814 gs~dG~I~vwdl~--~~-~-----~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
.+.++.|.+||.. ++ . ....+.........+ +.+|.+.++...++.|.+|+. +++.+..+..+...+++
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 4557899999985 55 2 233332233444555 457877777667789999998 67777778777778999
Q ss_pred EEEc-CCCCEEEEEeC
Q psy3053 884 VAWD-EKRKRLISGNL 898 (917)
Q Consensus 884 lafS-pdg~~LaSgs~ 898 (917)
++|+ ++++.|+.++.
T Consensus 276 ~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 276 PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEESTTSCEEEEEEB
T ss_pred EEEecCCCCEEEEEec
Confidence 9998 88887765543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-08 Score=107.35 Aligned_cols=226 Identities=8% Similarity=-0.005 Sum_probs=153.2
Q ss_pred cCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 578 SHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.+..--.+..|++++ .++++...++.|..||..+++.. .+. ....+.+++++++++++++ . ++.|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 334455678899964 55666667889999999877652 222 3456889999999995554 3 67899999988875
Q ss_pred eEEecc----CCCceeEEEecCCCCEEEEEECC---------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 657 VTELAG----HEDAISCVAWDEKRKRLISGSWD---------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 657 i~~l~~----H~~~Vt~l~~spd~~~L~Sgs~D---------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
...... ....+.+++++|+|++.++...+ ..-.+|.+.... ..............++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-------~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-------HVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-------CEEEEEEEESBEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-------CEEEEeeccccccceEEcC
Confidence 433322 12357899999999977654332 334566554321 1111222334567899999
Q ss_pred CCCEEE-EEECCCeEEEEEC--CCCeee-----EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 724 DNNQLA-VGTEAGELIIWSL--ENHLMT-----QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 724 dg~~La-sgs~dG~I~iwDl--~~~~~~-----~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+++.+. +.+.++.|.+|++ .++... ..+. ........++++++|++.++...++.|..||..+|+.+..+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 998665 4556789999987 455432 1222 234567899999999888888788899999999899888877
Q ss_pred cC-CceEEEEEe-CC-CEEEEEe
Q psy3053 796 FE-EKLLCLSWA-GE-EKVILGG 815 (917)
Q Consensus 796 ~~-~~i~~l~~s-~~-~~lv~gs 815 (917)
.+ ..+++++|. ++ +.+++++
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCceEEEEeCCCCCEEEEEc
Confidence 66 578999997 33 2444443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-09 Score=113.17 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=155.5
Q ss_pred eeeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 573 LHFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
+..+..+.....+.+|+++|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 344445556678899999998 5667667889999987 444 3445555667889999999997777666788999998
Q ss_pred ccCeeeEEec---c-CCCceeEEEecCCCCEEEE----EEC-------------CCeEEEEeCCCCCCCccCCcceeeec
Q psy3053 652 ECGRIVTELA---G-HEDAISCVAWDEKRKRLIS----GSW-------------DCTVRVWNTGASWSHMKPSKSLVSQL 710 (917)
Q Consensus 652 ~tg~~i~~l~---~-H~~~Vt~l~~spd~~~L~S----gs~-------------DgtI~vWdl~~~~~~~~~~~~~~~~~ 710 (917)
+ ++...... + ....+.+++++++|+..+| |.. .+.|..||..++. .....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--------~~~~~ 185 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--------LQRMA 185 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--------CEEEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--------EEEEe
Confidence 6 55432221 1 1134678999999998886 332 2456667664441 11111
Q ss_pred cCCCceEEEEEeCCCCEEEEEECC------CeEEEEECCCCeee--EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGTEA------GELIIWSLENHLMT--QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs~d------G~I~iwDl~~~~~~--~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
.......++|+|+++.|+++... +.|.+|++..+... ..+.....+....++++++|++ .+++.+ .|.+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~ 262 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCV 262 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEE
Confidence 23456789999999988777665 68999998765411 1121122345567899999984 444444 5999
Q ss_pred EECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEE
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVD 824 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwd 824 (917)
|+. .++.+..+.....+.++++.+++ .+++++.+ .+..++
T Consensus 263 ~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 263 FDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp ECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred ECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 998 56676666666677888887654 45555554 444433
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-09 Score=128.58 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=158.1
Q ss_pred ccCCcceEEEEEeCCCcEEEEEe-----cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc-------
Q psy3053 577 HSHKEAITAVAICGEGISVASVG-----RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS------- 644 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg------- 644 (917)
.+|...+.+++|||||++||-+. ....|++||+.+|+.+.. ........+++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 44667889999999999888443 235799999999986543 2222224678899 999999988774
Q ss_pred ------EEEEEEeccCee----eEEecc-CCCceeEEEecCCCCEEEEEEC----CCeEEEEeCCCCCCCccCCcceeee
Q psy3053 645 ------CVVIYDVECGRI----VTELAG-HEDAISCVAWDEKRKRLISGSW----DCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 645 ------~I~Iwdl~tg~~----i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~----DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
.|++|++.++.. +..... |...+..+.|+|||++|+..+. ++.|.+||+.++. ......
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~------~~~~~l 276 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN------APLLTV 276 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT------CCCEEE
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC------CceEEE
Confidence 499999887642 333333 5556788999999998865442 2589999987652 122223
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEC-C---CeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCC---eE
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTE-A---GELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNC---ML 780 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~-d---G~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---~I 780 (917)
..+....... ++++|+.++..+. + +.|..+|+.++.. ...+. .+...+. .|+++++.|+....++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 3344444444 6676766655443 2 6799999988654 23444 3444444 8999998887766544 68
Q ss_pred EEEECCCCeEEEEeecC--CceEEEEEeCCC-EEEEEeCC----CeEEEEECCCCEE
Q psy3053 781 NVYDLTTGMQVCNKVFE--EKLLCLSWAGEE-KVILGGAL----GMVYLVDLIQVQL 830 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~--~~i~~l~~s~~~-~lv~gs~d----G~I~vwdl~~~~~ 830 (917)
++||+.++. ...+..+ +.+..+++++++ .++....+ +.++.||+.+++.
T Consensus 353 ~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 999987553 3444433 345556665443 34444333 8899999987754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-09 Score=121.69 Aligned_cols=170 Identities=9% Similarity=0.069 Sum_probs=130.2
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCe---------ee-EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGR---------IV-TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~---------~i-~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
++..+++++...++++|+.++ +.+|++++.+ .. .....+.+ |+.++| +++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999886 5569976543 11 12224666 999999 88999998 8899999998
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
.+.. .......+...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|||+| ++.
T Consensus 114 ~sl~-------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 114 EELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEE
T ss_pred hhhh-------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEE
Confidence 7652 22223455666777776654 38889999999999999877643 34589999999999 678
Q ss_pred EeCCCeEEEEECCCCeE--EEEe------e----cCCceEEEEEeCCCEEEEE
Q psy3053 774 CGNNCMLNVYDLTTGMQ--VCNK------V----FEEKLLCLSWAGEEKVILG 814 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~--i~~~------~----~~~~i~~l~~s~~~~lv~g 814 (917)
|..||.+++|+...+.. ...+ . +...+.++.|.+++.+++.
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999887775 4444 1 4567999999988776653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-08 Score=124.30 Aligned_cols=277 Identities=12% Similarity=0.073 Sum_probs=185.1
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc-----------eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-----------ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-----------Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+++++.++.|..+|..+|+.+..+...... ...+++ ++..|+.++.|+.|..+|..++......
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456777778899999999999998877643211 112333 3568888999999999999887321110
Q ss_pred CcceeeeccCCCceEE-EEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCCCC------------------
Q psy3053 703 SKSLVSQLDLDNRIKC-LAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDINA------------------ 757 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h~~------------------ 757 (917)
.... .......+.+ ..+ .+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 155 ~~~~--~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 155 NTFE--GQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp ETTT--TCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred cCCc--CcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 0000 0000011111 111 1345555553 689999999999998877522111
Q ss_pred -------------CeEEEEEecCCCEEEEEeCCC-------------------eEEEEECCCCeEEEEeecCC-------
Q psy3053 758 -------------SVNGVLFSEDGCRVLSCGNNC-------------------MLNVYDLTTGMQVCNKVFEE------- 798 (917)
Q Consensus 758 -------------~V~~v~fspdg~~L~s~s~Dg-------------------~I~iwDl~tg~~i~~~~~~~------- 798 (917)
....++++|++..++.++.++ .|..+|..+|+.+.......
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 113578899988988887664 59999999999887765321
Q ss_pred ---ceEEEEE--eCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCCc-------------------------------
Q psy3053 799 ---KLLCLSW--AGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKDA------------------------------- 840 (917)
Q Consensus 799 ---~i~~l~~--s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~------------------------------- 840 (917)
....+.. ++. ..+++++.+|.++++|..+|+.+.........
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 1222222 221 36888999999999999999988766522100
Q ss_pred ------eEEEeecCCEEEEEeC-------------------------------------------CCeEEEEECcCCeEE
Q psy3053 841 ------VLSLHFDNCTMLVGCW-------------------------------------------DSCVVIYDVECGRIV 871 (917)
Q Consensus 841 ------V~sis~dg~~Lasgs~-------------------------------------------DG~I~Iwdl~tg~~l 871 (917)
-.++++++..+++... .|.|..||+.+++.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 1244667777777543 278999999999998
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEeC
Q psy3053 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLTV 917 (917)
Q Consensus 872 ~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Ltv 917 (917)
.... +..++.+..++.++..+++++.||.+++||.. +..++.+.+
T Consensus 471 W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 471 WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 8876 33445555667788899999999999999997 667777753
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-09 Score=114.25 Aligned_cols=267 Identities=12% Similarity=0.039 Sum_probs=176.0
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
..+...+.++...++|... .++.+ |..+|. +++................+. +..+.+|+.++.+..+|.. ++.
T Consensus 56 ~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 56 KSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp CGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred ecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 3344556778887777644 44444 888885 666655554443333344444 5567888889999999988 877
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
......+...+.++...+++. ++.++.++.|..+|.. +. ...........+.++...+++.+.+ ++ +.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~ 196 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-------EKWRFKTNDAITSAASIGKDGTIYF-GS--DK 196 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTCCEEE-ES--SS
T ss_pred EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-------EeEEEecCCCceeeeEEcCCCEEEE-Ee--CE
Confidence 777666666677777776665 6667788999999986 41 1111122234566677777777554 44 78
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCc-eEEEEEeCCCEEEEEe
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-LLCLSWAGEEKVILGG 815 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~-i~~l~~s~~~~lv~gs 815 (917)
+..+| .+++...... .....+.++...++|. +..++.++.+..+|. ++........... +.++..++++.+.+++
T Consensus 197 l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t 272 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS 272 (330)
T ss_dssp EEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred EEEEC-CCCcEEEEEc-cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec
Confidence 99999 7777766665 3446678888888874 555667788888874 5555555444332 3445667678999999
Q ss_pred CCCeEEEEECCCCEEEEEEecCCCceEEEee-cCCEEEEEeCCCeEEEEECcC
Q psy3053 816 ALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 816 ~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~t 867 (917)
.+|.|..+|. +++.+..+......+.++.. .+..|..|+.+|.+++...+.
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 9999999996 77777666655555555533 344577789999998877653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-08 Score=110.23 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=150.5
Q ss_pred cceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 623 MTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 623 ~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
......+|+|+++ +++++..++.|..|+. +++ ...+..+...+.+++++++|+.+++...++.|.+|+.. +. .
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~--~- 118 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ--A- 118 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--E-
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--E-
Confidence 3456788999998 5667777899999987 454 34455566789999999999866665566889999975 31 0
Q ss_pred CCcceeee-c-cCCCceEEEEEeCCCCEEEE----EEC-------------CCeEEEEECCCCeeeEEecCCCCCCeEEE
Q psy3053 702 PSKSLVSQ-L-DLDNRIKCLAISKDNNQLAV----GTE-------------AGELIIWSLENHLMTQQLSDDINASVNGV 762 (917)
Q Consensus 702 ~~~~~~~~-~-~h~~~V~~l~~spdg~~Las----gs~-------------dG~I~iwDl~~~~~~~~l~~~h~~~V~~v 762 (917)
...... . .....+..++++++|++.++ |.. .+.|..+|..+++..... .......+
T Consensus 119 --~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl 193 (305)
T 3dr2_A 119 --HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGL 193 (305)
T ss_dssp --EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEE
T ss_pred --EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcce
Confidence 011100 0 11234678999999998876 332 356888888766544332 23456789
Q ss_pred EEecCCCEEEEEeCC------CeEEEEECCCCeEEEEee----cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE
Q psy3053 763 LFSEDGCRVLSCGNN------CMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 763 ~fspdg~~L~s~s~D------g~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
+|+|+++.|+++... +.|.+|++..+....... .......+++++++.+.+++.+ .|.+|+. +++.+.
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLG 271 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEE
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEE
Confidence 999999988877665 789999987654211111 1234556888888888887754 5999998 577777
Q ss_pred EEecCCCceEEE--eecCCEEEEEeCCC
Q psy3053 833 QVRAHKDAVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 833 ~l~~h~~~V~si--s~dg~~Lasgs~DG 858 (917)
.+..+. .+.++ +++++.|..++.++
T Consensus 272 ~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 272 HIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred EEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 776554 34444 45788888887764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-06 Score=107.91 Aligned_cols=322 Identities=14% Similarity=0.106 Sum_probs=210.8
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-------ccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-------LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-------~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...|.++...++|.+.+ |+.++-+..|+..+++...... .....|.++...++|.+. .|+.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 45788898888887555 4444448889987665432211 124568888888777644 45555 58889988
Q ss_pred cCeeeEEecc-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 653 CGRIVTELAG-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 653 tg~~i~~l~~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+++....... ....|.++...++|. |..|+.++-|..|+..+..-........ ...-....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPY-KNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTT-SSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCC-CCCCCCCeeEEEEECCCC
Confidence 7765433211 235799999988775 5567777888899865431000000000 001124568999988887
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecC-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSD-------DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV--- 795 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~-------~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~--- 795 (917)
. |.+|+.++-|..||..++........ .....|.+++..++|..|..|+.++-|..+|..+++......
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 6 55678887899999887765443221 124678999998888857777877789999998876543321
Q ss_pred --cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec------CCCceEEEee--cCCEEEEEeCCCeEEEEEC
Q psy3053 796 --FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA------HKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 796 --~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~------h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl 865 (917)
....|.++..++++.+.+|+. +.+.+||..+++....... ....|.++.. +|. +..|+. +.+..|+.
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQ 524 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeC
Confidence 235688999998889999888 5689999988765432211 2356788844 455 444555 45889998
Q ss_pred cCCeEEEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 866 ECGRIVTELA-------GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 866 ~tg~~l~~l~-------~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
.+++. .+. .....|.++..+++|...+++. . -+..|+.+......
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~ 576 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR 576 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE
Confidence 87776 332 1345799999999998666543 3 57788876654443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-07 Score=103.05 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=145.4
Q ss_pred ceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 582 AITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 582 ~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
-..+.+|+|++. .+++...++.|..|+..+++.. .+. ....+.+++++++++++++. . +.|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 346788999754 5566667889999998876543 222 23568899999999877654 3 44999999888754332
Q ss_pred cc---C-CCceeEEEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 661 AG---H-EDAISCVAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 661 ~~---H-~~~Vt~l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
.. . ...+.+++++++|+.+++... .+.|..++ ++ ..............++|+|+++.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g--------~~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG--------KVTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT--------EEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC--------cEEEeeCCCcccCCeEEcCCCCEEEE
Confidence 21 1 235889999999987765542 23444454 22 11111122234678999999987755
Q ss_pred E-ECCCeEEEEECC--CC-ee-----eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-ce
Q psy3053 731 G-TEAGELIIWSLE--NH-LM-----TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-KL 800 (917)
Q Consensus 731 g-s~dG~I~iwDl~--~~-~~-----~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-~i 800 (917)
+ +.++.|.+||+. ++ .. ...+. .....+..++++++|.+.++...++.|..||. +++.+..+.... .+
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~ 273 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT 273 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence 5 456899999986 55 31 22222 23456788999999988777777789999998 566666665544 58
Q ss_pred EEEEEe-CCC-EEEEEeC
Q psy3053 801 LCLSWA-GEE-KVILGGA 816 (917)
Q Consensus 801 ~~l~~s-~~~-~lv~gs~ 816 (917)
.+++++ +++ .+++++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 899997 543 4544443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-08 Score=122.10 Aligned_cols=276 Identities=12% Similarity=0.082 Sum_probs=180.8
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc----------e-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA----------I-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~----------V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+++++.++.|..+|..+|+.+..+..+... + ..++. .+..++.++.|+.|..+|..++......
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888999999999999998887643221 1 11222 3468888999999999999887422110
Q ss_pred CcceeeeccCCCceEE-EEEeCCCCEEEEEE------CCCeEEEEECCCCeeeEEecCCCC-------------------
Q psy3053 703 SKSLVSQLDLDNRIKC-LAISKDNNQLAVGT------EAGELIIWSLENHLMTQQLSDDIN------------------- 756 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs------~dG~I~iwDl~~~~~~~~l~~~h~------------------- 756 (917)
.... .......+.+ ..+ .++ .+++++ .+|.|..||..+|+.+..+.....
T Consensus 148 ~~~~--~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 148 DTRA--DHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp ECCS--CTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred cCcC--CCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 0000 0000011111 011 133 455543 368999999999998877652110
Q ss_pred -----------CCeEEEEEecCCCEEEEEeCCCe-------------------EEEEECCCCeEEEEeecC---------
Q psy3053 757 -----------ASVNGVLFSEDGCRVLSCGNNCM-------------------LNVYDLTTGMQVCNKVFE--------- 797 (917)
Q Consensus 757 -----------~~V~~v~fspdg~~L~s~s~Dg~-------------------I~iwDl~tg~~i~~~~~~--------- 797 (917)
.....++++|++..++.++.++. |..+|..+|+.+......
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 11125788998889999887764 999999999998776532
Q ss_pred -CceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCC----------------------------------
Q psy3053 798 -EKLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHK---------------------------------- 838 (917)
Q Consensus 798 -~~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~---------------------------------- 838 (917)
..........++ .++.++.+|.++++|..+|+.+.......
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 112222211122 57788999999999999999875432111
Q ss_pred -------CceEEEeecCCEEEEEeC---------------------------------------------CCeEEEEECc
Q psy3053 839 -------DAVLSLHFDNCTMLVGCW---------------------------------------------DSCVVIYDVE 866 (917)
Q Consensus 839 -------~~V~sis~dg~~Lasgs~---------------------------------------------DG~I~Iwdl~ 866 (917)
-.-.+++|+...++++.. +|.|..||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 001244566666666522 3789999999
Q ss_pred CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 867 CGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 867 tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
+|+.+.....+. ++..-.++..+..+++|+.||.++.||.+ +..+..++
T Consensus 464 tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 464 KQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 999998887554 33334566678899999999999999987 56777765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-06 Score=108.72 Aligned_cols=319 Identities=12% Similarity=0.120 Sum_probs=205.0
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
|.++...++|.+.+ ++.++-|..|+..+++..... ......|.++...+++. +.+|+.++.+..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 88898888886554 555555888888776543321 12345678887777765 4455555558899988776543322
Q ss_pred c-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 662 G-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 662 ~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
. ....|.++...++|... .|+.+ -|.+||..+..-............-....|.++...++|. +.+|+.+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 1 23569999998877654 45555 5888987654100000000000011235799999998887 5567777
Q ss_pred CeEEEEECCCCeeeEEec-----CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---------cCCce
Q psy3053 735 GELIIWSLENHLMTQQLS-----DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV---------FEEKL 800 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~-----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~---------~~~~i 800 (917)
+-|..++..++....... ......|.++...++|. |..|+.++-|..||..++....... ....|
T Consensus 330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCE
T ss_pred CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccE
Confidence 779999876654332211 01245689999888875 5567777779999988775443221 13568
Q ss_pred EEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEe----cCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEE
Q psy3053 801 LCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVR----AHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTE 873 (917)
Q Consensus 801 ~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~----~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~ 873 (917)
.++..++++. +.+|+.++.|..+|..+++...-.. .....|.++.. +|. |..|+.+ .+.+||..+++....
T Consensus 409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~~-Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTLS-ALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEESS-CEEEEETTTTEEEEC
T ss_pred EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEecC-ceeEEeCCCCeEEEc
Confidence 8999988888 9999998889999998876443221 13457888855 455 4455554 488999888765443
Q ss_pred ecC------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 874 LAG------HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 874 l~~------h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
... ....|.++...++|...+.+. +.|..|+.++..
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 211 236799999999988766554 458888876543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=114.62 Aligned_cols=249 Identities=7% Similarity=-0.019 Sum_probs=166.7
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeCCCCCCCccCCcceeee-cc--
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNTGASWSHMKPSKSLVSQ-LD-- 711 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl~~~~~~~~~~~~~~~~-~~-- 711 (917)
+|.++|..+++.+.++.....+ .++++||++.++++. .+++|.+||..+.. ..... .+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCc
Confidence 8899999999999998765566 799999999998886 37899999998862 11111 11
Q ss_pred ----CCCceEEEEEeCCCCEEEEEEC--CCeEEE--EECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEE
Q psy3053 712 ----LDNRIKCLAISKDNNQLAVGTE--AGELII--WSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNV 782 (917)
Q Consensus 712 ----h~~~V~~l~~spdg~~Lasgs~--dG~I~i--wDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~i 782 (917)
.......++++|||++++++.. +..+.+ +|+.+ +..+..+ +. ..+.|+|+ .+++.+.||.+.+
T Consensus 118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEE
T ss_pred cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEE
Confidence 0134568999999999998875 457888 88877 4444311 11 12334443 4455667888888
Q ss_pred EECCC-----CeEEEE----eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC--EEEEEEe------------cCCC
Q psy3053 783 YDLTT-----GMQVCN----KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV--QLLKQVR------------AHKD 839 (917)
Q Consensus 783 wDl~t-----g~~i~~----~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~--~~i~~l~------------~h~~ 839 (917)
.|+.+ ++.... ........ .....+.++..+. +.+.+.|.... +.+..+. ....
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 88876 332211 11111112 2444456666666 99999998653 3333321 1112
Q ss_pred ceEEEeecCCEEEEEeC---------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecC
Q psy3053 840 AVLSLHFDNCTMLVGCW---------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGN-LVGAPKLYATE 908 (917)
Q Consensus 840 ~V~sis~dg~~Lasgs~---------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~-~LaSgs-~DG~V~IWdl~ 908 (917)
....++++++.++++.. ++.+.++|+.+++.+..+.... ...+++|+|||+ .+++.. .++.|.++|+.
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 22567899998877643 2356799999999998886443 578999999998 556666 59999999998
Q ss_pred cc-eEEE
Q psy3053 909 FY-LLYV 914 (917)
Q Consensus 909 ~~-ll~~ 914 (917)
+. .+..
T Consensus 346 t~kvv~~ 352 (368)
T 1mda_H 346 SDQDQSS 352 (368)
T ss_dssp SCEEEEE
T ss_pred CCcEEEE
Confidence 65 4443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-07 Score=112.33 Aligned_cols=302 Identities=11% Similarity=0.088 Sum_probs=192.4
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc----------e-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT----------L-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~----------V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
+..++.++.++.|..+|..+|+.+.+....... + ..+++ ++..+++++.|+.|..+|..+|+.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777888999999999999988776543211 0 11222 3567888899999999999999998877
Q ss_pred ccCC----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCc----ceee---------e-------
Q psy3053 661 AGHE----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSK----SLVS---------Q------- 709 (917)
Q Consensus 661 ~~H~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~----~~~~---------~------- 709 (917)
.... ..+.+ .... + ..++.++. +|.|..+|..++........ .... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 6421 11111 1111 3 35555443 58999999988742211000 0000 0
Q ss_pred ----ccCCCceEEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCeeeEEecCC-CC-------CC
Q psy3053 710 ----LDLDNRIKCLAISKDNNQLAVGTEAGE-------------------LIIWSLENHLMTQQLSDD-IN-------AS 758 (917)
Q Consensus 710 ----~~h~~~V~~l~~spdg~~Lasgs~dG~-------------------I~iwDl~~~~~~~~l~~~-h~-------~~ 758 (917)
.........+++++++..++.++.++. |..+|..+|+.+..+... |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 011112235788898889988887763 999999999998887633 21 23
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCC-------------ce----------------------
Q psy3053 759 VNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEE-------------KL---------------------- 800 (917)
Q Consensus 759 V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-------------~i---------------------- 800 (917)
.....+..+|+ .++.++.+|.++++|..+|+.+....... ++
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 33333344675 68889999999999999999885433221 00
Q ss_pred --EEEEEeCCC-EEEEE------------------------------------eCCCeEEEEECCCCEEEEEEecCCCce
Q psy3053 801 --LCLSWAGEE-KVILG------------------------------------GALGMVYLVDLIQVQLLKQVRAHKDAV 841 (917)
Q Consensus 801 --~~l~~s~~~-~lv~g------------------------------------s~dG~I~vwdl~~~~~i~~l~~h~~~V 841 (917)
..++++++. .+++. ..+|.|..||+.+++.+.+...+....
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~ 461 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN 461 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc
Confidence 014455432 32221 123889999999999988776543322
Q ss_pred -EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCC-EEEEEe
Q psy3053 842 -LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRK-RLISGN 897 (917)
Q Consensus 842 -~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~-~LaSgs 897 (917)
..+...+..+++|+.||.++.||.++|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 2446688899999999999999999999998886543211 2233445666 444443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-10 Score=130.30 Aligned_cols=258 Identities=10% Similarity=0.010 Sum_probs=148.3
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCc-ee-
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-IS- 668 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-Vt- 668 (917)
++..+++++.||.|..||..+|+.+..... ..+.+..+..++..+++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999888776 45555556677878888899999999999999887766543211 11
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee
Q psy3053 669 CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT 748 (917)
Q Consensus 669 ~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~ 748 (917)
+.... .+..+++|+.|+.|..||..++..... ..... ...++|++..+++++.+|.|..||.++++.+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~--------~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT--------LSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE--------ecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11111 345788888999999999988732211 11111 2344568889999999999999999999876
Q ss_pred EEecCCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEE-EEEeCCCEEEEE---eCCCeEE
Q psy3053 749 QQLSDDINASVNGVLFSEDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC-LSWAGEEKVILG---GALGMVY 821 (917)
Q Consensus 749 ~~l~~~h~~~V~~v~fspdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~-l~~s~~~~lv~g---s~dG~I~ 821 (917)
..+... .....+++++. ..+++++.||.+..||..+|+.+.......++.. ..+++++.+.+. ..++.++
T Consensus 154 W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~ 230 (369)
T 2hz6_A 154 WNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLR 230 (369)
T ss_dssp CEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHH
T ss_pred EeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeeccccee
Confidence 665411 11222233332 5677888999999999999999888777766554 333444433210 1133455
Q ss_pred EEECCCCE----EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECc
Q psy3053 822 LVDLIQVQ----LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 822 vwdl~~~~----~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.+|..+|+ .+...... ..+.+....+..++.++.||.++.++..
T Consensus 231 ~ld~~tG~~~~~~~W~~~~~-~~~~sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 231 YLTFMSGEVGRITKWKYPFP-KETEAKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCCC-CHHHHHHHSEEEECBEECSSCEECCEEE
T ss_pred eeehhcCCcccceeeeeccC-ccccccccccceEEEecccCCEEecCcc
Confidence 55554444 22222111 1111111134567888888988888765
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.6e-08 Score=107.07 Aligned_cols=233 Identities=7% Similarity=-0.013 Sum_probs=149.3
Q ss_pred cceEEEEEeCCCcEEEEEec--CCceEEEeccCCceeeee-------eccccceEEEEEeCCCCEEEEEec-----ccEE
Q psy3053 581 EAITAVAICGEGISVASVGR--DAMLKIHSLKTGRQERSA-------VLSSMTLSSLCILPDNCTMLVGCW-----DSCV 646 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~--Dg~I~IWd~~t~~~~~~~-------~~~~~~V~sl~~spd~~~Lasgs~-----Dg~I 646 (917)
.....++++++|+.+++... ++.++||.+.+++.. .+ ..+-..+..+++++++++.++... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 344667766555432 11 123356889999999887666544 5789
Q ss_pred EEEEeccCeeeEEecc------CCCceeEEEecCCCCEE-EEEE---CCCeEEEEeCCCCCCCccC----C--c--ceee
Q psy3053 647 VIYDVECGRIVTELAG------HEDAISCVAWDEKRKRL-ISGS---WDCTVRVWNTGASWSHMKP----S--K--SLVS 708 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~------H~~~Vt~l~~spd~~~L-~Sgs---~DgtI~vWdl~~~~~~~~~----~--~--~~~~ 708 (917)
.+||+.+++.+..+.. +...+..+++++++..+ ++.+ .++.|.+||..++...... . . ....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999999987766643 22356899999865444 5554 6789999998765310000 0 0 0000
Q ss_pred ecc--------------CCCceEEEEEeCCCCEEEEEECCC-eEEEEECC---CCe-----e---eEEecCCCCCCeEEE
Q psy3053 709 QLD--------------LDNRIKCLAISKDNNQLAVGTEAG-ELIIWSLE---NHL-----M---TQQLSDDINASVNGV 762 (917)
Q Consensus 709 ~~~--------------h~~~V~~l~~spdg~~Lasgs~dG-~I~iwDl~---~~~-----~---~~~l~~~h~~~V~~v 762 (917)
..+ ....+..++++|+|+.|.++..++ .+..++.. .+. . +... ++.+....+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgi 253 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGI 253 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceE
Confidence 000 113468899999999888887765 55555432 110 0 0111 123356679
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec--CCceEEEEEeCCCEEEEEeC
Q psy3053 763 LFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 763 ~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~lv~gs~ 816 (917)
+++++|..+++...++.|.+||..+++....... ...+.++++++++.+++.+.
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 9999999998888899999999856754333322 23477888887766554443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-07 Score=105.43 Aligned_cols=259 Identities=10% Similarity=0.045 Sum_probs=164.5
Q ss_pred cceEEEEEeCCCCEEEEEec--ccEEEEEEeccCeeeEEe-------ccCCCceeEEEecCCCCEEEEEEC-----CCeE
Q psy3053 623 MTLSSLCILPDNCTMLVGCW--DSCVVIYDVECGRIVTEL-------AGHEDAISCVAWDEKRKRLISGSW-----DCTV 688 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~--Dg~I~Iwdl~tg~~i~~l-------~~H~~~Vt~l~~spd~~~L~Sgs~-----DgtI 688 (917)
.....++++++|+.+++... ++.++||.+.+++.. .+ .+|-..+.+++++++++.+++-+. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 46788999999998888642 343666666666543 22 235568999999999876665443 5789
Q ss_pred EEEeCCCCCCCccCCcceeee----ccCCCceEEEEEeCCCCEE-EEEE---CCCeEEEEECCCCeeeEEecCCCCCCe-
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQ----LDLDNRIKCLAISKDNNQL-AVGT---EAGELIIWSLENHLMTQQLSDDINASV- 759 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~----~~h~~~V~~l~~spdg~~L-asgs---~dG~I~iwDl~~~~~~~~l~~~h~~~V- 759 (917)
.+||+.++... ..... ..+...+..+++++++..+ ++.. .++.|.+||+.+++..+.+. .|....
T Consensus 96 ~~~d~~tg~~~-----~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~ 169 (343)
T 2qe8_A 96 VAWDTLNNQLS-----RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAP 169 (343)
T ss_dssp EEEETTTTEEE-----EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSC
T ss_pred EEEECCCCeEE-----EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccc
Confidence 99998776200 00000 1223456899999865555 4444 57899999999888776654 321111
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCC-eEEEEECC---CCE-----
Q psy3053 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALG-MVYLVDLI---QVQ----- 829 (917)
Q Consensus 760 ~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG-~I~vwdl~---~~~----- 829 (917)
....+.++|..+.+.+.++.+..|. ..+..+++++++ .++++...+ .+..++.. .+.
T Consensus 170 ~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 170 EDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred cccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 0144566777777777788776653 135678899887 455655554 66666532 110
Q ss_pred ---EEEEEecCCCc--eEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy3053 830 ---LLKQVRAHKDA--VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAP 902 (917)
Q Consensus 830 ---~i~~l~~h~~~--V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V 902 (917)
.+.. .++.+. -.+++++|.+.++...++.|.+||..+++....... +.....+++++++|.++++.+..+.+
T Consensus 237 ~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 237 LGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 0011 112122 245577899888888899999999866765433332 24568999999999988887755444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-08 Score=111.13 Aligned_cols=232 Identities=6% Similarity=-0.071 Sum_probs=153.5
Q ss_pred ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccCeeeEEeccC-------CC
Q psy3053 603 MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECGRIVTELAGH-------ED 665 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg~~i~~l~~H-------~~ 665 (917)
+|.+.|..+++.+.++.....+ .++++||++.+.++. .++.|.+||..+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999998877777 799999999998886 3789999999999999888643 12
Q ss_pred ceeEEEecCCCCEEEEEEC--CCeEEE--EeCCCCCCCccCCcc---------eeeeccCCCceEEEE------------
Q psy3053 666 AISCVAWDEKRKRLISGSW--DCTVRV--WNTGASWSHMKPSKS---------LVSQLDLDNRIKCLA------------ 720 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~--DgtI~v--Wdl~~~~~~~~~~~~---------~~~~~~h~~~V~~l~------------ 720 (917)
....++++|||++++++.. +..|.+ +|..+ ........+ .......++.+..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 4568999999999998875 467888 88754 100000000 000000000111111
Q ss_pred --------------EeCCCCEEEEEECCCeEEEEECCCCe--eeEEecCC---------CCCCeEEEEEecCCCEEEEEe
Q psy3053 721 --------------ISKDNNQLAVGTEAGELIIWSLENHL--MTQQLSDD---------INASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 721 --------------~spdg~~Lasgs~dG~I~iwDl~~~~--~~~~l~~~---------h~~~V~~v~fspdg~~L~s~s 775 (917)
.++++..++..+. +.+.+.|+.+.. .+..+... .......++++|+++.++++.
T Consensus 204 ~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred EEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 1444454555555 778888876432 22222100 011122267999988888654
Q ss_pred C---------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE--EEEEe-CCCeEEEEECCCCEEEEEEecCC
Q psy3053 776 N---------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK--VILGG-ALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 776 ~---------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~--lv~gs-~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
. ++.+.++|+.+++.+..+........+++++++. +++.. .++.|.++|+.+++.+.++....
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 3 2356699999998888887777788888888764 44555 48899999999999888886443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.5e-07 Score=106.51 Aligned_cols=300 Identities=13% Similarity=0.072 Sum_probs=185.5
Q ss_pred CcEEEEEec-CCceEEEec-cCCceeeeeeccccc-----------eEEEEEeCCCCE----EEEEecccEEEEEEeccC
Q psy3053 592 GISVASVGR-DAMLKIHSL-KTGRQERSAVLSSMT-----------LSSLCILPDNCT----MLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 592 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~~~~~~~~-----------V~sl~~spd~~~----Lasgs~Dg~I~Iwdl~tg 654 (917)
+..|+.++. ++.|..+|. .+|+.+.+....... ...++++|.+.. |++++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 899988766543211 123455444444 888899999999999999
Q ss_pred eeeEEeccCC----CceeE-EEecCCCCEEEEEE------CCCeEEEEeCCCCCCCccCCcceeee--------------
Q psy3053 655 RIVTELAGHE----DAISC-VAWDEKRKRLISGS------WDCTVRVWNTGASWSHMKPSKSLVSQ-------------- 709 (917)
Q Consensus 655 ~~i~~l~~H~----~~Vt~-l~~spd~~~L~Sgs------~DgtI~vWdl~~~~~~~~~~~~~~~~-------------- 709 (917)
+.+....... ..+++ .... ++ .++.++ .+|.|..+|..++.............
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9887654322 01221 1111 33 455554 38999999998874221100000000
Q ss_pred ---------------cc-CCCce-EEEEEeCCCCEEEEEECC----------------CeEEEEECCCCeeeEEecCCCC
Q psy3053 710 ---------------LD-LDNRI-KCLAISKDNNQLAVGTEA----------------GELIIWSLENHLMTQQLSDDIN 756 (917)
Q Consensus 710 ---------------~~-h~~~V-~~l~~spdg~~Lasgs~d----------------G~I~iwDl~~~~~~~~l~~~h~ 756 (917)
.. ....+ ..+++.++...+..++.+ +.|..+|.++|+.+..+...+.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 00 00011 245677788888887765 3899999999999888764322
Q ss_pred C--------CeEEEEEe-cCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCC-------------c-e----------
Q psy3053 757 A--------SVNGVLFS-EDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-------------K-L---------- 800 (917)
Q Consensus 757 ~--------~V~~v~fs-pdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-------------~-i---------- 800 (917)
. ...-+... .+| ..++.++.+|.++++|..+|+.+....... . +
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 1 11112222 467 467778899999999999999887654321 0 0
Q ss_pred ----------------EEEEEeCCC-EEEEE---------------------------------e------CCCeEEEEE
Q psy3053 801 ----------------LCLSWAGEE-KVILG---------------------------------G------ALGMVYLVD 824 (917)
Q Consensus 801 ----------------~~l~~s~~~-~lv~g---------------------------------s------~dG~I~vwd 824 (917)
..++++|+. .+++. + ..|.+..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 122333321 11110 1 358899999
Q ss_pred CCCCEEEEEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCCEE
Q psy3053 825 LIQVQLLKQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRKRL 893 (917)
Q Consensus 825 l~~~~~i~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~~L 893 (917)
+.+++.+-+........ ..+...+..++.|+.||.++.+|.++|+.+.+++...+.+ .-+.+..+|+..
T Consensus 460 ~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 460 AITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp TTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 99999887765321111 1234578888889999999999999999998886433221 224455677643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-07 Score=107.17 Aligned_cols=300 Identities=12% Similarity=0.037 Sum_probs=185.3
Q ss_pred CcEEEEEec-CCceEEEec-cCCceeeeeeccccc-e----------EEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 592 GISVASVGR-DAMLKIHSL-KTGRQERSAVLSSMT-L----------SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 592 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~~~~~~~~-V----------~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
+..++.++. ++.|..+|. .+|+.+.+....... + ..+++ ++..+++++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446677777 899999999 899988766543210 0 11222 35678888899999999999999887
Q ss_pred EeccCC----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCc--ceee-----------------
Q psy3053 659 ELAGHE----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSK--SLVS----------------- 708 (917)
Q Consensus 659 ~l~~H~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~--~~~~----------------- 708 (917)
...... ..+.+ .... + ..++.++. ++.|..+|..++........ ....
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 654321 01211 1111 3 45555554 78999999988742211000 0000
Q ss_pred ------------eccCCCceEEEEEeCCCCEEEEEECC----------------CeEEEEECCCCeeeEEecCCC-C---
Q psy3053 709 ------------QLDLDNRIKCLAISKDNNQLAVGTEA----------------GELIIWSLENHLMTQQLSDDI-N--- 756 (917)
Q Consensus 709 ------------~~~h~~~V~~l~~spdg~~Lasgs~d----------------G~I~iwDl~~~~~~~~l~~~h-~--- 756 (917)
..+.......++++++...+..++.+ +.|..+|..+|+.+..+...+ .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00000011235677777777776642 369999999999988776322 1
Q ss_pred ----CCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc--------------e---------------
Q psy3053 757 ----ASVNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK--------------L--------------- 800 (917)
Q Consensus 757 ----~~V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~--------------i--------------- 800 (917)
....-+....+|+ .++.++.+|.++++|..+|+.+........ +
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 1111122334774 577888899999999999998876554321 1
Q ss_pred -----------EEEEEeCC-CEEEEEe-------------------------------------CCCeEEEEECCCCEEE
Q psy3053 801 -----------LCLSWAGE-EKVILGG-------------------------------------ALGMVYLVDLIQVQLL 831 (917)
Q Consensus 801 -----------~~l~~s~~-~~lv~gs-------------------------------------~dG~I~vwdl~~~~~i 831 (917)
..++++|+ +.+++.+ .+|.|..||+.+++.+
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~ 457 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence 12345543 3444432 3588999999999988
Q ss_pred EEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC-EEEEEEcCCCCEEEE
Q psy3053 832 KQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-ISCVAWDEKRKRLIS 895 (917)
Q Consensus 832 ~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~-V~slafSpdg~~LaS 895 (917)
.+........ ..+...+..+++++.||.|+.+|.++|+.+.++...... -..+.+..+|+.++.
T Consensus 458 W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 458 WTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 7775432211 122445778888999999999999999999888643221 122335567765543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-10 Score=125.85 Aligned_cols=204 Identities=15% Similarity=0.049 Sum_probs=113.8
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
++..+++++.||.|..||..++.. ...... ..+.+..+..++..+++++.||.|+.||..+++.+......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~--------~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI--------KWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE--------EEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE--------EEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 568899999999999999988731 111111 34444445567778888889999999999998877665421
Q ss_pred CCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEE
Q psy3053 755 INASVN-GVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQ 833 (917)
Q Consensus 755 h~~~V~-~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~ 833 (917)
....+. +..+. ++..+++++.++.++.||..+|+.+.......... .+. .++.+++++.+|.|+.||..+++.+..
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~-~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADS-LSP-STSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCccc-ccc-cCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 111110 00111 34567788889999999999998876655443221 111 345788899999999999999986655
Q ss_pred EecCCCceEEEeecC---CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCC
Q psy3053 834 VRAHKDAVLSLHFDN---CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRK 891 (917)
Q Consensus 834 l~~h~~~V~sis~dg---~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~ 891 (917)
+..+......++.+. ..+++++.||.|+.||..+|+.+..... ..++ ...+++++|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 156 ATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred EecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 432211111112221 5677889999999999999999887763 3444 3345566664
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-05 Score=99.54 Aligned_cols=326 Identities=13% Similarity=0.103 Sum_probs=204.0
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-------eccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-------VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-------~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
..|.++...++|.+.+ |+.++-|..|+..+++..... ......|.++...+++.+.+ |+.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCC
Confidence 4688888888886554 555655888887766433211 11235688888877776544 4555 688999877
Q ss_pred CeeeEEecc-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC-------cceeeeccCCCceEEE
Q psy3053 654 GRIVTELAG-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS-------KSLVSQLDLDNRIKCL 719 (917)
Q Consensus 654 g~~i~~l~~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~-------~~~~~~~~h~~~V~~l 719 (917)
++....... ....|.++...++|. |..|+..+-|.++|..+........ .......-....|.++
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 654432211 235689999887765 5566765678889876542110000 0000001134578999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLS--------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~--------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i 791 (917)
...++|. |.+|+.++-|..++..++....... ......|.+++..++|. |..|+.++-|..+|..++...
T Consensus 319 ~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 319 FQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred EEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE
Confidence 9988876 6667777778899887654333211 11345689998888775 455665666889998655432
Q ss_pred EE----eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe--cCCCceEEEeec-CCEEEEEeCCCeEEEEE
Q psy3053 792 CN----KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR--AHKDAVLSLHFD-NCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 792 ~~----~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~--~h~~~V~sis~d-g~~Lasgs~DG~I~Iwd 864 (917)
.. ......|.++..+.++.+.+|+.++.+..+|..+++...... .....|.++..+ ...|..|+. +.|..+|
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp CC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred EccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 21 112356889999888899999988889999988776433221 134678888654 345666666 5689999
Q ss_pred CcCCeEEEEecCC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 865 VECGRIVTELAGH-----EDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 865 l~tg~~l~~l~~h-----~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
..+++........ ...|.++...++|...+. +.++-+..|+.++.....
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEE
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEE
Confidence 8877654332222 467999999998876654 443347778876554433
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-05 Score=85.52 Aligned_cols=235 Identities=8% Similarity=-0.049 Sum_probs=148.3
Q ss_pred cEEEEEecCCceEEEeccCCcee-----eeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCc
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQE-----RSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDA 666 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~-----~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~ 666 (917)
.+|+.+.. +.|+.+++...... ..+.........+++++++..|..+ ..++.|..++.+.+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 46788887654321 1122223456789999976655554 45789999999866544444333356
Q ss_pred eeEEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---CCeEEEEEC
Q psy3053 667 ISCVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE---AGELIIWSL 742 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~---dG~I~iwDl 742 (917)
..++++++++..|+.+ ...+.|.+++..... .... ..........++++|++..+..+.. .+.|..+++
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~------~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ------RRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEE-ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC------EEEE-EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 7899999876655544 456789999986431 0111 1112245789999997666655554 368888887
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
.... ...+..........+++++++..|..+. ..+.|.++|..................++.+.+..+++....+.|.
T Consensus 154 dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 154 DGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVI 232 (267)
T ss_dssp TSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEE
T ss_pred CCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEE
Confidence 6433 2333212335678999999877665554 5678999998755433333333445677777553344444568999
Q ss_pred EEECCCCEEEEEEec
Q psy3053 822 LVDLIQVQLLKQVRA 836 (917)
Q Consensus 822 vwdl~~~~~i~~l~~ 836 (917)
.+|..+++.+..+..
T Consensus 233 ~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 233 AMDLAISKEMDTFHP 247 (267)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEeCCCCCceEEEcc
Confidence 999999998888754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-06 Score=100.37 Aligned_cols=322 Identities=11% Similarity=0.086 Sum_probs=200.9
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-------ccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-------LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-------~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
..|.++...++|.+.+. +.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 56889998888876554 444 58889877655432211 2245688888777765 55666656688888877
Q ss_pred CeeeEEec--------------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcce--eeeccCCCceE
Q psy3053 654 GRIVTELA--------------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL--VSQLDLDNRIK 717 (917)
Q Consensus 654 g~~i~~l~--------------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~--~~~~~h~~~V~ 717 (917)
++...... .....|.++...++|. |..|+.++-|..++.....-........ ....-....|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 65432111 1345789999988775 6667777888889876542100000000 00011235689
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS--DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+++..++|. |.+|+.++-|..+|..++....... ......|.++...++|.+ ..|+.++.+..+|..+++......
T Consensus 367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~ 444 (781)
T 3v9f_A 367 SVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIEL 444 (781)
T ss_dssp EEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCS
T ss_pred EEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEecc
Confidence 999888776 5566766678999987654322111 123467889988887764 456666779999988776543221
Q ss_pred ---cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC-----CCceEEEee--cCCEEEEEeCCCeEEEEEC
Q psy3053 796 ---FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH-----KDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 796 ---~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h-----~~~V~sis~--dg~~Lasgs~DG~I~Iwdl 865 (917)
....+.++..++++.+.+|+. +.|..+|..+++........ ...|.++.. +|. |..|+.++.+..+|.
T Consensus 445 ~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 445 EKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTP 522 (781)
T ss_dssp TTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECT
T ss_pred CCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeC
Confidence 235689999998889999988 66899998876543322222 356888844 444 555665445888988
Q ss_pred cCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 866 ECGRIVTELAG---HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 866 ~tg~~l~~l~~---h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
.+++...-... ....|.++...++|...++.. +|.|..|+.+...
T Consensus 523 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 523 DMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp TCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred CCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 77654432221 235689999999988666544 6655778776543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-06 Score=103.27 Aligned_cols=301 Identities=13% Similarity=0.123 Sum_probs=184.9
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccce---------EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTL---------SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V---------~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
+..++.++.++.|..+|..+|+.+.+........ ..+++ .+..+++++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3355556654448999999999887765432210 11222 356788889999999999999999877653
Q ss_pred CCC----cee-EEEecC---CCC-EEEEEE------CCCeEEEEeCCCCCCCccCCcc--eee-----------------
Q psy3053 663 HED----AIS-CVAWDE---KRK-RLISGS------WDCTVRVWNTGASWSHMKPSKS--LVS----------------- 708 (917)
Q Consensus 663 H~~----~Vt-~l~~sp---d~~-~L~Sgs------~DgtI~vWdl~~~~~~~~~~~~--~~~----------------- 708 (917)
... .+. ...... +++ .+++++ .+|.|..+|..++......... ...
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 111111 122 566654 3789999998887422211000 000
Q ss_pred -------------e--ccCCCceEEEEEeCCCCEEEEEEC--------------------C----CeEEEEECCCCeeeE
Q psy3053 709 -------------Q--LDLDNRIKCLAISKDNNQLAVGTE--------------------A----GELIIWSLENHLMTQ 749 (917)
Q Consensus 709 -------------~--~~h~~~V~~l~~spdg~~Lasgs~--------------------d----G~I~iwDl~~~~~~~ 749 (917)
. .+....-..++++|+...+.+++. | +.|..+|..+|+.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 0 000011124677788888887763 2 689999999999998
Q ss_pred EecCC-CCC----CeE-EEEEe---cCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCce-----------------
Q psy3053 750 QLSDD-INA----SVN-GVLFS---EDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL----------------- 800 (917)
Q Consensus 750 ~l~~~-h~~----~V~-~v~fs---pdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i----------------- 800 (917)
.+... |.. .+. -+.+. .+|+ .++.++.+|.++++|..+|+.+........+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 87632 211 111 12222 4674 6788899999999999999988765543210
Q ss_pred -----------------------------EEEEEeCC-CEEEEEe---------------------------------CC
Q psy3053 801 -----------------------------LCLSWAGE-EKVILGG---------------------------------AL 817 (917)
Q Consensus 801 -----------------------------~~l~~s~~-~~lv~gs---------------------------------~d 817 (917)
..++++|+ +.+++.. ..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 01233432 2333221 35
Q ss_pred CeEEEEECCCCEEEEEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCCEEE
Q psy3053 818 GMVYLVDLIQVQLLKQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRKRLI 894 (917)
Q Consensus 818 G~I~vwdl~~~~~i~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~~La 894 (917)
|.|..||+.+++.+-+........ ..+...+..++.|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 889999999999887765432211 1234467888889999999999999999999887543322 2256667887444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-07 Score=108.01 Aligned_cols=275 Identities=9% Similarity=0.072 Sum_probs=176.8
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc----------e-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA----------I-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~----------V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+++++.++.|..+|..+|+.+..+...... + ..++. .+..++.++.|+.|..+|..++......
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557777888999999999999998877543221 1 11222 3467888899999999999887422110
Q ss_pred CcceeeeccCCCceEE-EEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCCC-------------------
Q psy3053 703 SKSLVSQLDLDNRIKC-LAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDIN------------------- 756 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h~------------------- 756 (917)
... .......+.+ ..+ .+..+++++. +|.|..+|..+|+.+..+.....
T Consensus 144 ~~~---~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 144 QTT---DPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp ECS---CTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred ccC---CCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 000 0000011110 011 1345555543 58999999999999887752110
Q ss_pred -----------CCeEEEEEecCCCEEEEEeCCC-------------------eEEEEECCCCeEEEEeecC---------
Q psy3053 757 -----------ASVNGVLFSEDGCRVLSCGNNC-------------------MLNVYDLTTGMQVCNKVFE--------- 797 (917)
Q Consensus 757 -----------~~V~~v~fspdg~~L~s~s~Dg-------------------~I~iwDl~tg~~i~~~~~~--------- 797 (917)
.....++++|++..++.++.++ .|..+|..+|+.+......
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 0112468888888888887766 3999999999998776542
Q ss_pred -CceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCCC---------------------------------
Q psy3053 798 -EKLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHKD--------------------------------- 839 (917)
Q Consensus 798 -~~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~--------------------------------- 839 (917)
.+........++ .+++++.+|.++++|..+|+.+........
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 222222222233 478889999999999999998854432110
Q ss_pred -----ceEEEeecCCEEEEE------------------------------------eCCCeEEEEECcCCeEEEEecCCC
Q psy3053 840 -----AVLSLHFDNCTMLVG------------------------------------CWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 840 -----~V~sis~dg~~Lasg------------------------------------s~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
.-.+++++...+++. ..+|.|..||+.+|+.+.....+.
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 002344554554431 124889999999999988776433
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 879 DAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 879 ~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
++....+...+..+++++.||.++.||.+ +..+..+.
T Consensus 459 -~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 459 -HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp -SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 33334455578899999999999999997 55666654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-06 Score=95.43 Aligned_cols=230 Identities=11% Similarity=0.053 Sum_probs=146.7
Q ss_pred CCCCEEEE-EecccEEEEEEeccC----eeeEEec------c-CCCceeEEEecCCCCEEEEEECC------CeEEEEeC
Q psy3053 632 PDNCTMLV-GCWDSCVVIYDVECG----RIVTELA------G-HEDAISCVAWDEKRKRLISGSWD------CTVRVWNT 693 (917)
Q Consensus 632 pd~~~Las-gs~Dg~I~Iwdl~tg----~~i~~l~------~-H~~~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl 693 (917)
+++++|++ |..++.|+++|+.+. +...++. . -...-..+...|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777665 455788999999765 6666663 1 11234567788999 77776665 78999998
Q ss_pred CCCCCCccCCcceeeecc----CCCceEEEEEeCCCCEEEEEE-------------------CCCeEEEEECCCCeeeEE
Q psy3053 694 GASWSHMKPSKSLVSQLD----LDNRIKCLAISKDNNQLAVGT-------------------EAGELIIWSLENHLMTQQ 750 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~----h~~~V~~l~~spdg~~Lasgs-------------------~dG~I~iwDl~~~~~~~~ 750 (917)
.+.. ...... ...--..+.|+|+++.++++. .+.+|.+||+.+++.+.+
T Consensus 172 ~T~~--------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFE--------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCC--------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCe--------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 8762 111111 112234578899999888874 368999999999988888
Q ss_pred ecCC-CCCCeEEEEE--ecCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEE
Q psy3053 751 LSDD-INASVNGVLF--SEDGCRVLSCGN------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 751 l~~~-h~~~V~~v~f--spdg~~L~s~s~------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
+..+ .......+.| +|+|+++.+++. +++|.+|....|... .+.
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~---------------------------~~~ 296 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN---------------------------AEK 296 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE---------------------------EEE
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee---------------------------EEE
Confidence 7743 2234556666 999998887764 557777665433211 111
Q ss_pred EEECCCCEEEEEEe---------cCCCceEEEeecCCEEEEEeC-CCeEEEEECc---CCeEEEEecCCC----------
Q psy3053 822 LVDLIQVQLLKQVR---------AHKDAVLSLHFDNCTMLVGCW-DSCVVIYDVE---CGRIVTELAGHE---------- 878 (917)
Q Consensus 822 vwdl~~~~~i~~l~---------~h~~~V~sis~dg~~Lasgs~-DG~I~Iwdl~---tg~~l~~l~~h~---------- 878 (917)
+.|+.+.+....+. +....-..+++||++|.++.. .+.|.++|+. +.+.+..+....
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 22222211111110 111222346899999888775 6899999985 345665554321
Q ss_pred ----CCEEEEEEcCCCCEEEEEe
Q psy3053 879 ----DAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 879 ----~~V~slafSpdg~~LaSgs 897 (917)
+.-..++++|||++|+++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 1247799999999999988
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.2e-05 Score=81.80 Aligned_cols=247 Identities=6% Similarity=-0.062 Sum_probs=155.4
Q ss_pred CEEEEEecccEEEEEEeccCeee-----EEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceee
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIV-----TELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVS 708 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i-----~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~ 708 (917)
.+|+.+. .+.|+.++++..... ..+......+.++++++++..|+.+. .++.|..++..+.. ....
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~ 73 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI 73 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEE
Confidence 3455544 357888888754321 11222224578999999766665544 56899999986541 1111
Q ss_pred eccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEE
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYD 784 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwD 784 (917)
.........++++++++..+..+ ...+.|.++++.......... ........++++|++..|..+.. .+.|..++
T Consensus 74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 11222467899999976555544 456789999987543322222 22356789999997666665554 36888888
Q ss_pred CCCCeEEEEe-ecCCceEEEEEeCC-CEEEE-EeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe-CCCeE
Q psy3053 785 LTTGMQVCNK-VFEEKLLCLSWAGE-EKVIL-GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC-WDSCV 860 (917)
Q Consensus 785 l~tg~~i~~~-~~~~~i~~l~~s~~-~~lv~-gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs-~DG~I 860 (917)
+......... ........++++++ +.+.+ ....+.|.++|.........+.+ ......++.++..++.+. .++.|
T Consensus 153 ~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v 231 (267)
T 1npe_A 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSV 231 (267)
T ss_dssp TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEE
T ss_pred cCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEECCCCeE
Confidence 7543221111 12245788999874 45554 44568999999976544433332 334456767777776666 45899
Q ss_pred EEEECcCCeEEEEecCCC-CCEEEEEEcCCCC
Q psy3053 861 VIYDVECGRIVTELAGHE-DAISCVAWDEKRK 891 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~-~~V~slafSpdg~ 891 (917)
.++|..+++.+..+.... .....+++.|++.
T Consensus 232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 232 IAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEeCCCCCceEEEccccccccceeeecCccC
Confidence 999999999988886443 2467788888764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-06 Score=101.95 Aligned_cols=227 Identities=9% Similarity=-0.001 Sum_probs=161.8
Q ss_pred CCCEEEEEec-ccEEEEEEeccCeeeEEecc-CCCceeEEEe-c-CCCCEEEEEEC------------------CCeEEE
Q psy3053 633 DNCTMLVGCW-DSCVVIYDVECGRIVTELAG-HEDAISCVAW-D-EKRKRLISGSW------------------DCTVRV 690 (917)
Q Consensus 633 d~~~Lasgs~-Dg~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~-s-pd~~~L~Sgs~------------------DgtI~v 690 (917)
||+++.+... ++.|.+.|+++.++.+.+.- .......+++ + |++.+++.++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7887777655 56799999999998875432 2245778887 5 89999988852 457899
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----------------------------------
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG----------------------------------- 735 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG----------------------------------- 735 (917)
.|..+. .......-......++++|+|+++++.+.+.
T Consensus 180 ID~~t~--------~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 180 VDADKW--------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EETTTT--------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EECCCC--------eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 998765 2222222222456788999999988887553
Q ss_pred ---eEEEEECCC--Cee-eEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCe------------EEEEeec
Q psy3053 736 ---ELIIWSLEN--HLM-TQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGM------------QVCNKVF 796 (917)
Q Consensus 736 ---~I~iwDl~~--~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~------------~i~~~~~ 796 (917)
.|.+.|..+ ++. +..+. ......++.++|||+++++++ .+.+|.++|+.+.+ .......
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 477777776 444 44443 234667899999999887776 57899999998653 4556667
Q ss_pred CCceEEEEEeCCCEEE-EEeCCCeEEEEECCC----------CEEEEEEecCCCce-EEE------eecCCEEEEEeCC-
Q psy3053 797 EEKLLCLSWAGEEKVI-LGGALGMVYLVDLIQ----------VQLLKQVRAHKDAV-LSL------HFDNCTMLVGCWD- 857 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv-~gs~dG~I~vwdl~~----------~~~i~~l~~h~~~V-~si------s~dg~~Lasgs~D- 857 (917)
......++|+++|.+. +..-+++|.+||+.+ .+.+.++..|..+- .+. ++||++|+++..-
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 7789999999988644 455689999999977 56788887765532 222 6799999987642
Q ss_pred -CeE-----------EEEECcCCe
Q psy3053 858 -SCV-----------VIYDVECGR 869 (917)
Q Consensus 858 -G~I-----------~Iwdl~tg~ 869 (917)
.++ .++|+..++
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccccccCCCCCCCcceEEEcCCCc
Confidence 223 788986554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.4e-06 Score=86.87 Aligned_cols=198 Identities=13% Similarity=0.127 Sum_probs=138.9
Q ss_pred eeccCCC--ceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEE
Q psy3053 708 SQLDLDN--RIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNV 782 (917)
Q Consensus 708 ~~~~h~~--~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~i 782 (917)
....|+. ....+++++++.+.++.+. ++.|.++|+.+++.+..+..+.......+++. |..|..+ -.++.+.+
T Consensus 13 ~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 13 NEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred EEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEE
Confidence 3445554 3589999998755555443 57999999999999988763322233455554 4455544 46789999
Q ss_pred EECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC--C---ceEEEee-cCCEEEEEe
Q psy3053 783 YDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK--D---AVLSLHF-DNCTMLVGC 855 (917)
Q Consensus 783 wDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~--~---~V~sis~-dg~~Lasgs 855 (917)
+|..+++.+..+... ..-..++.++. .++++..++.|.++|..+.+.+..+.... . ....+.+ +|...+...
T Consensus 91 iD~~t~~v~~~i~~g~~~g~glt~Dg~-~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~ 169 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDGWGLATDGK-ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW 169 (266)
T ss_dssp EETTTTEEEEEEECCSSSCCEEEECSS-SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EECCCCcEEEEEECCCCCeEEEEECCC-EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC
Confidence 999999999888765 44455666665 55566678999999999999888876322 1 2344433 554444444
Q ss_pred CCCeEEEEECcCCeEEEEecCC-------------CCCEEEEEEcCCCCEEE-EEeCCCcEEEEecC
Q psy3053 856 WDSCVVIYDVECGRIVTELAGH-------------EDAISCVAWDEKRKRLI-SGNLVGAPKLYATE 908 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h-------------~~~V~slafSpdg~~La-Sgs~DG~V~IWdl~ 908 (917)
.++.|.+.|..+++.+..+... ......++|+|+++.++ ++...+.|.+-++.
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 5789999999999999888632 13568999999987555 55577888887764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.8e-07 Score=103.66 Aligned_cols=267 Identities=11% Similarity=0.016 Sum_probs=182.8
Q ss_pred EEEEEecccEEEEEEeccCeeeEEec----------------------c-----------C------CCceeEEEecC--
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELA----------------------G-----------H------EDAISCVAWDE-- 674 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~----------------------~-----------H------~~~Vt~l~~sp-- 674 (917)
.+.+|+..|.++|+-+.+++.+..+. + + .+.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 35678889999999998887766442 0 0 11222344444
Q ss_pred ---CCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceee--eccCCCceEEEEE-e-CCCCEEEEEE--------------
Q psy3053 675 ---KRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVS--QLDLDNRIKCLAI-S-KDNNQLAVGT-------------- 732 (917)
Q Consensus 675 ---d~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~--~~~h~~~V~~l~~-s-pdg~~Lasgs-------------- 732 (917)
||++++.... ++.|.+.|+.+. .... .......+..+++ + |+++++++++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~--------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVM--------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTT--------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCc--------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 7787777665 457999999876 2222 2333456788887 5 8999998885
Q ss_pred ----CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC------------------------------
Q psy3053 733 ----EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC------------------------------ 778 (917)
Q Consensus 733 ----~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg------------------------------ 778 (917)
.++.+.++|..+.+...++.-+ +....++++|+|+++++++.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 2457999999999998888732 2457788999999999888553
Q ss_pred --------eEEEEECCC--CeE-EEEeecCCceEEEEEeCCCEEE--EEeCCCeEEEEECCCCE------------EEEE
Q psy3053 779 --------MLNVYDLTT--GMQ-VCNKVFEEKLLCLSWAGEEKVI--LGGALGMVYLVDLIQVQ------------LLKQ 833 (917)
Q Consensus 779 --------~I~iwDl~t--g~~-i~~~~~~~~i~~l~~s~~~~lv--~gs~dG~I~vwdl~~~~------------~i~~ 833 (917)
.|.+.|.++ ++. +..+.......++.++|+|..+ ++..+++|.++|+.+.+ ....
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 477788877 544 5566666677889999988644 34456899999998653 4444
Q ss_pred EecCCCce-EEEeecCCEEEEEeCCCeEEEEECcC----------CeEEEEecCCCCCE-----EEEEEcCCCCEEEEEe
Q psy3053 834 VRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVEC----------GRIVTELAGHEDAI-----SCVAWDEKRKRLISGN 897 (917)
Q Consensus 834 l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~t----------g~~l~~l~~h~~~V-----~slafSpdg~~LaSgs 897 (917)
+....++- ++++++|...++...|++|.+||+.+ .+.+..+..|-.+- .++..+|||++|+++.
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 44333332 34577884344556799999999987 56788887765432 1224589999999975
Q ss_pred C---CCc----------EEEEecCcceE
Q psy3053 898 L---VGA----------PKLYATEFYLL 912 (917)
Q Consensus 898 ~---DG~----------V~IWdl~~~ll 912 (917)
. |.- -.++|+++..+
T Consensus 407 k~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 407 KFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCccccccCCCCCCCcceEEEcCCCcE
Confidence 3 432 17888876543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-06 Score=87.94 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=134.8
Q ss_pred eeccCCCce--EEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEE
Q psy3053 708 SQLDLDNRI--KCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNV 782 (917)
Q Consensus 708 ~~~~h~~~V--~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~i 782 (917)
....|+... ..+.|+ ++.+..+++.+| .|+.+|+.+++.+..+.. ..........+++..|.... .++.+.+
T Consensus 35 ~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 344555444 789998 677777777766 899999999999988863 23333333334455555554 5889999
Q ss_pred EECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC--CCc---eEEEee-cCCEEEEEeC
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH--KDA---VLSLHF-DNCTMLVGCW 856 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h--~~~---V~sis~-dg~~Lasgs~ 856 (917)
+|..+.+.+.++.....-..++.++. .++.+..++.|.++|..+.+.+.++... ..+ +..+.+ +|+..+....
T Consensus 112 ~D~~t~~~~~ti~~~~eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~ 190 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGEGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190 (262)
T ss_dssp EETTTCCEEEEEECSSCCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred EECccCcEEEEEECCCCceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence 99999999999887665556666655 6666666889999999999988887642 222 333433 5654444446
Q ss_pred CCeEEEEECcCCeEEEEecCC------------CCCEEEEEEcCCCCEEEEEeCC
Q psy3053 857 DSCVVIYDVECGRIVTELAGH------------EDAISCVAWDEKRKRLISGNLV 899 (917)
Q Consensus 857 DG~I~Iwdl~tg~~l~~l~~h------------~~~V~slafSpdg~~LaSgs~D 899 (917)
++.|.+.|.++|+.+..+... .+..+.+||+|+++.|+..|..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 889999999999999887532 1356899999998888877754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-06 Score=97.93 Aligned_cols=275 Identities=11% Similarity=0.047 Sum_probs=170.1
Q ss_pred CCEEEEEec-ccEEEEEEe-ccCeeeEEeccCCC-c---------e-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 634 NCTMLVGCW-DSCVVIYDV-ECGRIVTELAGHED-A---------I-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 634 ~~~Lasgs~-Dg~I~Iwdl-~tg~~i~~l~~H~~-~---------V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
+..+.+++. ++.|..+|. .+|+.+........ . + ..++. .+..++.++.|+.+..+|..++....
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 888999999 89998877653221 0 0 11223 34678888899999999998873221
Q ss_pred cCCcceeeeccCCCceEE-EEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCCCC----------------
Q psy3053 701 KPSKSLVSQLDLDNRIKC-LAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDINA---------------- 757 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h~~---------------- 757 (917)
..... .......+.+ ..+ .+..+++++. +|.|..+|..+|+.+..+......
T Consensus 140 ~~~~~---~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 140 EVEVC---DPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEECC---CGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EecCC---CCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 10000 0000001111 111 1345666655 789999999999988876522110
Q ss_pred ---------------------CeEEEEEecCCCEEEEEeCC----------------CeEEEEECCCCeEEEEeecCC--
Q psy3053 758 ---------------------SVNGVLFSEDGCRVLSCGNN----------------CMLNVYDLTTGMQVCNKVFEE-- 798 (917)
Q Consensus 758 ---------------------~V~~v~fspdg~~L~s~s~D----------------g~I~iwDl~tg~~i~~~~~~~-- 798 (917)
....+++.++...+..++.+ +.|..+|..+|+.+.......
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 00235677766677666532 369999999999887765321
Q ss_pred --------ceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCC-------------Cce------------
Q psy3053 799 --------KLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHK-------------DAV------------ 841 (917)
Q Consensus 799 --------~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-------------~~V------------ 841 (917)
...-+....++ .++.++.+|.++++|..+++.+....... .++
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 374 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence 11112221234 36678889999999999999887664321 111
Q ss_pred ----------------EEEeecCCEEEEEe-------------------------------------CCCeEEEEECcCC
Q psy3053 842 ----------------LSLHFDNCTMLVGC-------------------------------------WDSCVVIYDVECG 868 (917)
Q Consensus 842 ----------------~sis~dg~~Lasgs-------------------------------------~DG~I~Iwdl~tg 868 (917)
.+++|+...+++.+ .+|.|..||..++
T Consensus 375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence 13355556665543 3578999999999
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 869 RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
+.+.+.... .++.+......+..++.++.||.|+.||.. +..+..+.
T Consensus 455 ~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 455 KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 988877532 222222333356788889999999999986 55776654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-05 Score=94.92 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=169.4
Q ss_pred CCEEEEEec-ccEEEEEEe-ccCeeeEEeccCCCc-----------eeEEEecCCCCE----EEEEECCCeEEEEeCCCC
Q psy3053 634 NCTMLVGCW-DSCVVIYDV-ECGRIVTELAGHEDA-----------ISCVAWDEKRKR----LISGSWDCTVRVWNTGAS 696 (917)
Q Consensus 634 ~~~Lasgs~-Dg~I~Iwdl-~tg~~i~~l~~H~~~-----------Vt~l~~spd~~~----L~Sgs~DgtI~vWdl~~~ 696 (917)
+..+.+++. ++.|.-+|. .+|+.+......... ...++++|.+.. |+.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 888999999 899988776543211 123455433334 888889999999999887
Q ss_pred CCCccCCcceeeeccCCCceEE-EEEeCCCCEEEEEE------CCCeEEEEECCCCeeeEEecCCCCC------------
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKC-LAISKDNNQLAVGT------EAGELIIWSLENHLMTQQLSDDINA------------ 757 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs------~dG~I~iwDl~~~~~~~~l~~~h~~------------ 757 (917)
......... .......+.+ ..+. + ..+++++ .+|.|+.+|..+|+.+.........
T Consensus 142 ~~~W~~~~~---~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENS---DIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECC---CGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCC---CCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 322110000 0000001111 1111 3 3555555 3799999999999998876532111
Q ss_pred -------------------------CeEEEEEecCCCEEEEEeCC----------------CeEEEEECCCCeEEEEeec
Q psy3053 758 -------------------------SVNGVLFSEDGCRVLSCGNN----------------CMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 758 -------------------------~V~~v~fspdg~~L~s~s~D----------------g~I~iwDl~tg~~i~~~~~ 796 (917)
.-...++.++...++.+..+ +.|..+|..+|+.+.....
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 00135667777777777655 3899999999999877654
Q ss_pred CC----------ceEEEEEe-CCC----EEEEEeCCCeEEEEECCCCEEEEEEecCC-------------Cc--------
Q psy3053 797 EE----------KLLCLSWA-GEE----KVILGGALGMVYLVDLIQVQLLKQVRAHK-------------DA-------- 840 (917)
Q Consensus 797 ~~----------~i~~l~~s-~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-------------~~-------- 840 (917)
.. ...-+... .++ .++.++.+|.++++|..+|+.+....... .+
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 31 11112222 334 46668899999999999999887654211 00
Q ss_pred --------------------eEEEeecCCEEEEE---------------------------------e------CCCeEE
Q psy3053 841 --------------------VLSLHFDNCTMLVG---------------------------------C------WDSCVV 861 (917)
Q Consensus 841 --------------------V~sis~dg~~Lasg---------------------------------s------~DG~I~ 861 (917)
-.+++|+.+++++. + .+|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 11223333333321 1 357899
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
.||+.+|+.+...... .++.+-.....+..++.++.||.++.||.+ +..+..++
T Consensus 457 A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 457 AYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 9999999988776521 122111122356788889999999999987 55777765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-06 Score=91.68 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=127.3
Q ss_pred EEe--CCCcEEEE-EecCCceEEEeccCC----ceeeeee-------ccccceEEEEEeCCCCEEEEEecc------cEE
Q psy3053 587 AIC--GEGISVAS-VGRDAMLKIHSLKTG----RQERSAV-------LSSMTLSSLCILPDNCTMLVGCWD------SCV 646 (917)
Q Consensus 587 ~fS--pdg~~Las-gs~Dg~I~IWd~~t~----~~~~~~~-------~~~~~V~sl~~spd~~~Lasgs~D------g~I 646 (917)
.++ +++++|+. +..++.|.++|+.+. +..+.+. .....-..+..+|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 77777655 556889999998754 4444442 011123456778999 66666555 789
Q ss_pred EEEEeccCeeeEEeccCCC---ceeEEEecCCCCEEEEEE-------------------CCCeEEEEeCCCCCCCccCCc
Q psy3053 647 VIYDVECGRIVTELAGHED---AISCVAWDEKRKRLISGS-------------------WDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~---~Vt~l~~spd~~~L~Sgs-------------------~DgtI~vWdl~~~~~~~~~~~ 704 (917)
.++|.++++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.++
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-------- 238 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-------- 238 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--------
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--------
Confidence 9999999999988863222 234578899999998885 3689999999865
Q ss_pred ceeeeccC---CCceEEEEE--eCCCCEEEEEEC------CCeEEEEECCCCee--eEEe--cC----C-----------
Q psy3053 705 SLVSQLDL---DNRIKCLAI--SKDNNQLAVGTE------AGELIIWSLENHLM--TQQL--SD----D----------- 754 (917)
Q Consensus 705 ~~~~~~~h---~~~V~~l~~--spdg~~Lasgs~------dG~I~iwDl~~~~~--~~~l--~~----~----------- 754 (917)
........ ......+.| +|+++++.+++. +++|.+|....+.. .+.+ .. .
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 11111111 133455555 999998888774 56887766554421 1111 10 0
Q ss_pred CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECC
Q psy3053 755 INASVNGVLFSEDGCRVLSCGN-NCMLNVYDLT 786 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~ 786 (917)
.......+.+|+||++|.++.. .+.|.++|+.
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 0245788999999999988775 6789999985
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-05 Score=80.70 Aligned_cols=189 Identities=16% Similarity=0.135 Sum_probs=133.8
Q ss_pred eeeeccCCC--ceEEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE-EEeCCCeE
Q psy3053 706 LVSQLDLDN--RIKCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL-SCGNNCML 780 (917)
Q Consensus 706 ~~~~~~h~~--~V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~-s~s~Dg~I 780 (917)
+.....|+. -...+.|+. +.+..+++..| .|+.+|+.+++.+....-....--..++. .+..|. ..-.++.+
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEE
Confidence 333445543 466899986 55666666654 89999999999998886322222233444 344444 44568899
Q ss_pred EEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC-----CceEEEee-cCCEEEEE
Q psy3053 781 NVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK-----DAVLSLHF-DNCTMLVG 854 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-----~~V~sis~-dg~~Lasg 854 (917)
.++|..+.+.+.++.....-..++.++. .++++..++.|.++|..+.+.+.++.... ..+..+.+ +|+..+..
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg~-~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALTSDDS-HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECSS-CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEeeCCC-EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 9999999999999888766667776665 67777779999999999999888876422 23345544 55544444
Q ss_pred eCCCeEEEEECcCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEeC
Q psy3053 855 CWDSCVVIYDVECGRIVTELAGH-------------EDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 855 s~DG~I~Iwdl~tg~~l~~l~~h-------------~~~V~slafSpdg~~LaSgs~ 898 (917)
..+..|.+.|.++|+.+..+... .+..+.+|++|+++.|+..|.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 46789999999999999887521 135689999998888777664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-05 Score=84.31 Aligned_cols=233 Identities=11% Similarity=0.013 Sum_probs=146.1
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec-------------------cCCCceeEEEecCCCCEEEEEECC
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA-------------------GHEDAISCVAWDEKRKRLISGSWD 685 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-------------------~H~~~Vt~l~~spd~~~L~Sgs~D 685 (917)
..++++.++++++.++..++.|..|+..+++...... .....+.++++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4577889999878888889999999887665432110 011357889999733456666556
Q ss_pred CeEEEEeCCCCCCCccCCcceeeec--cCCCceEEEEEeC-CCCEEEEEEC-----------------CCeEEEEECCCC
Q psy3053 686 CTVRVWNTGASWSHMKPSKSLVSQL--DLDNRIKCLAISK-DNNQLAVGTE-----------------AGELIIWSLENH 745 (917)
Q Consensus 686 gtI~vWdl~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp-dg~~Lasgs~-----------------dG~I~iwDl~~~ 745 (917)
+.|..+|..++.. ....... ........+++.+ +|++.++-.. +|.|..+|..++
T Consensus 101 ~~i~~~d~~~g~~-----~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-----TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TEEEEECTTCEEC-----EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCEEEEeCCCCEE-----EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 6688888654310 0111000 1123467899999 8987666432 377999998877
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC---eEEEEeecCCceEEEEEeCCCEEEEEeC-----
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTG---MQVCNKVFEEKLLCLSWAGEEKVILGGA----- 816 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg---~~i~~~~~~~~i~~l~~s~~~~lv~gs~----- 816 (917)
+...... .......++++|+|+.|+++ ...+.|..+++... .........+ ...+++++++.+.++..
T Consensus 176 ~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 6443322 12345679999999876665 45688999998742 2111112334 77889998887766654
Q ss_pred ------CCeEEEEECCCCEEEEEEecCC----CceEEEee-cCCEEEEEeCCCeEEEEECc
Q psy3053 817 ------LGMVYLVDLIQVQLLKQVRAHK----DAVLSLHF-DNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 817 ------dG~I~vwdl~~~~~i~~l~~h~----~~V~sis~-dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.+.|..+|. .++.+..+.... ..++++.. ++.+.++...++.|..+++.
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 367888887 477777665432 33555544 44444444467788888875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-05 Score=83.16 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=133.0
Q ss_pred eeccCCCc--eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 708 SQLDLDNR--IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 708 ~~~~h~~~--V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
....|+.. ...+.++ ++.+.++.+.+|.|+.+|+.+++.+..+ -....-...+++.. ++..++...++.+.+||.
T Consensus 47 ~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 47 REYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEET
T ss_pred EEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEEC
Confidence 33445443 4788887 4567777788899999999999988877 23222223354432 234444456889999999
Q ss_pred CCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec--CCC---ceEEEee-cCCEEEEEeCCCe
Q psy3053 786 TTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA--HKD---AVLSLHF-DNCTMLVGCWDSC 859 (917)
Q Consensus 786 ~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~--h~~---~V~sis~-dg~~Lasgs~DG~ 859 (917)
.+.+.+.++.....-..+++++. .++++..++.|.++|..+.+.+.++.. +.. .+..+.+ +|+..+....++.
T Consensus 124 ~Tl~~~~ti~~~~eGwGLt~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~ 202 (268)
T 3nok_A 124 MPPQRERTTRYSGEGWGLCYWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSD 202 (268)
T ss_dssp TTTEEEEEEECSSCCCCEEEETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSE
T ss_pred CcCcEEEEEeCCCceeEEecCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCe
Confidence 99999999887766567777765 777777799999999999998888764 222 2344444 6654444446789
Q ss_pred EEEEECcCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEeC
Q psy3053 860 VVIYDVECGRIVTELAGH-------------EDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h-------------~~~V~slafSpdg~~LaSgs~ 898 (917)
|.+.|.++|+.+..+... .+..+.||++|+++.|+..|.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999998887532 135689999998776666554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=7.1e-05 Score=88.87 Aligned_cols=241 Identities=16% Similarity=0.083 Sum_probs=153.2
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeecccc----ceE-EEEEeCC---CC-EEEEEec------ccEEEEEEeccCee
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSM----TLS-SLCILPD---NC-TMLVGCW------DSCVVIYDVECGRI 656 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~----~V~-sl~~spd---~~-~Lasgs~------Dg~I~Iwdl~tg~~ 656 (917)
+..++.++.|+.|..+|..+|+.+........ .+. +..+..+ ++ .+++++. +|.|+.+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45688888999999999999998876654321 111 1112222 23 5666653 78999999999998
Q ss_pred eEEeccCCCce-----------------------------------------eEEEecCCCCEEEEEEC-----------
Q psy3053 657 VTELAGHEDAI-----------------------------------------SCVAWDEKRKRLISGSW----------- 684 (917)
Q Consensus 657 i~~l~~H~~~V-----------------------------------------t~l~~spd~~~L~Sgs~----------- 684 (917)
+.........+ ..+++.|+...++.++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 77654211000 12456666677776663
Q ss_pred ---------C----CeEEEEeCCCCCCCccCCcceeeeccCC-------CceEEEEEe-CCCC---EEEEEECCCeEEEE
Q psy3053 685 ---------D----CTVRVWNTGASWSHMKPSKSLVSQLDLD-------NRIKCLAIS-KDNN---QLAVGTEAGELIIW 740 (917)
Q Consensus 685 ---------D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~-------~~V~~l~~s-pdg~---~Lasgs~dG~I~iw 740 (917)
| +.|..+|..++...... ....|+ ....-+... .+|+ .++.++.+|.++++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~-----q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~l 351 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFY-----QHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVV 351 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEE-----ESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEE
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEE-----eCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEE
Confidence 2 58999998887321110 001111 111122222 4674 78889999999999
Q ss_pred ECCCCeeeEEecCCCC------------CC--------------------------------eEEEEEecCCCEEEEEe-
Q psy3053 741 SLENHLMTQQLSDDIN------------AS--------------------------------VNGVLFSEDGCRVLSCG- 775 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~------------~~--------------------------------V~~v~fspdg~~L~s~s- 775 (917)
|..+|+.+........ .+ ...++++|+...+++..
T Consensus 352 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~ 431 (582)
T 1flg_A 352 DRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPAN 431 (582)
T ss_dssp ETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEE
T ss_pred ECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEech
Confidence 9999998876542210 00 01346676655555432
Q ss_pred --------------------------------CCCeEEEEECCCCeEEEEeecCCceEE-EEEeCCCEEEEEeCCCeEEE
Q psy3053 776 --------------------------------NNCMLNVYDLTTGMQVCNKVFEEKLLC-LSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 776 --------------------------------~Dg~I~iwDl~tg~~i~~~~~~~~i~~-l~~s~~~~lv~gs~dG~I~v 822 (917)
.+|.|..||+.+|+.+........... ......+.+++|+.||.++.
T Consensus 432 ~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 432 HWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp CEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEE
T ss_pred hcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEE
Confidence 257899999999998877665443321 11224568889999999999
Q ss_pred EECCCCEEEEEEecC
Q psy3053 823 VDLIQVQLLKQVRAH 837 (917)
Q Consensus 823 wdl~~~~~i~~l~~h 837 (917)
+|..+|+.+.++...
T Consensus 512 ~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 512 FDAKSGKELWKFQTG 526 (582)
T ss_dssp EETTTCCEEEEEECS
T ss_pred EECCCCCEEEEecCC
Confidence 999999999888754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-05 Score=85.57 Aligned_cols=232 Identities=11% Similarity=-0.018 Sum_probs=143.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec--------------------cccceEEEEEeC-CCCEEEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL--------------------SSMTLSSLCILP-DNCTMLVG 640 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~--------------------~~~~V~sl~~sp-d~~~Lasg 640 (917)
...+++++++|+.++++..++.|..|+..++.... +.. .......+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 45678899999888888889999999877654321 110 112467888997 554 5555
Q ss_pred ecccEEEEEEeccCeeeEEe---cc-CCCceeEEEecC-CCCEEEEEEC-----------------CCeEEEEeCCCCCC
Q psy3053 641 CWDSCVVIYDVECGRIVTEL---AG-HEDAISCVAWDE-KRKRLISGSW-----------------DCTVRVWNTGASWS 698 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l---~~-H~~~Vt~l~~sp-d~~~L~Sgs~-----------------DgtI~vWdl~~~~~ 698 (917)
...+.+..+|..+++..... .+ .......+++.+ +|+..++-.. ++.|..||..++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE- 176 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence 55555888887655432111 11 113467899999 8877666432 3678888875541
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECCCCe--eeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLENHL--MTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
.......-.....++++++++.+.++ +..+.|..+++.... ....+.. ..+ ...+++.++|++.++..
T Consensus 177 -------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 177 -------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp -------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEE
T ss_pred -------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEec
Confidence 11111112345679999999866655 556899999987521 1111111 123 78899999998766654
Q ss_pred C----------CCeEEEEECCCCeEEEEeecC-----CceEEEEEeCCCEEEEEe-CCCeEEEEECCC
Q psy3053 776 N----------NCMLNVYDLTTGMQVCNKVFE-----EKLLCLSWAGEEKVILGG-ALGMVYLVDLIQ 827 (917)
Q Consensus 776 ~----------Dg~I~iwDl~tg~~i~~~~~~-----~~i~~l~~s~~~~lv~gs-~dG~I~vwdl~~ 827 (917)
. .+.|..+|.. ++.+..+... ..+.+++... +.+++++ ..+.|..+++..
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHD-GLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEET-TEEEEECSSCSEEEEEEC--
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeC-CEEEEeecCCCceEEEeccc
Confidence 4 4678888874 6666555543 2355555544 4555544 567888888753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00021 Score=77.21 Aligned_cols=225 Identities=8% Similarity=-0.037 Sum_probs=138.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--CeEEEEEC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA--GELIIWSL 742 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d--G~I~iwDl 742 (917)
.....++|+++++.+++-..++.|..||.... ..........+.+++++++|+++++.... ..|..+|.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 45778999999887777667899999987643 11122234568899999999976665433 24777887
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE-EEEe-------ec-C--CceEEEEEeCCCEE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ-VCNK-------VF-E--EKLLCLSWAGEEKV 811 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~-i~~~-------~~-~--~~i~~l~~s~~~~l 811 (917)
.+++...............++..+++..+++...++.|..+|..++.. +... .. . .....++.++...+
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly 182 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY 182 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence 777654333212223345566555554455444688999999876532 2110 00 1 13445544443244
Q ss_pred EEEeCCCeEEEEECCC-CEE--EEEEe-cCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEE--EecCCCCCEEEEE
Q psy3053 812 ILGGALGMVYLVDLIQ-VQL--LKQVR-AHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVT--ELAGHEDAISCVA 885 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~-~~~--i~~l~-~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~--~l~~h~~~V~sla 885 (917)
++-...+.|..+++.. ++. ...+. .....=.+++++|++.++....+.|.+++.. ++... .+.......++++
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 5556678999999864 321 11111 1112224557788877776778899999975 66533 3333335689999
Q ss_pred Ec---CCCCEEEEEeCC
Q psy3053 886 WD---EKRKRLISGNLV 899 (917)
Q Consensus 886 fS---pdg~~LaSgs~D 899 (917)
|. |+++.|+.++..
T Consensus 262 ~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EecccCCCCEEEEECCC
Confidence 98 898887776644
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-05 Score=81.79 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=125.9
Q ss_pred eEEEEEeCCCcEEEEEecCC--ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-ccEEEEEEeccCeeeEE
Q psy3053 583 ITAVAICGEGISVASVGRDA--MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVECGRIVTE 659 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg--~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg~~i~~ 659 (917)
...+.|+ ++.+..+++.+| .|+++|+++++.++.+...... ....+.+++..|....+ ++.+.++|.++.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~-FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY-FGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc-ceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788998 677777888776 8999999999998888765432 22223334556666554 88999999999999988
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC---CceEEEEEeCCCCEEEEEECCCe
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD---NRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+...... ..++ +++..|+.+..++.|.++|..+.... ..+ ...... ..+..+.+. +|...+....+..
T Consensus 123 i~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~----~~I-~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 123 FNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPV----RTI-TVTAHGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEE----EEE-ECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEE----EEE-EeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence 8753322 2333 56777777666788999998775210 010 111111 234456666 6765555556889
Q ss_pred EEEEECCCCeeeEEecCC-----------CCCCeEEEEEecCCCEEEEEeCC
Q psy3053 737 LIIWSLENHLMTQQLSDD-----------INASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~-----------h~~~V~~v~fspdg~~L~s~s~D 777 (917)
|.+.|..+++.+..+... ...-.+.+|++|+++.|.+++..
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 999999999998887621 12356899999998888887753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-05 Score=81.98 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=123.8
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
...+.|+ ++.+..+++.+|.|+++|+++++.++.+ ... .....-..++++.|.... .++.+.+||.++.+.+.++.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4678887 4677778888999999999999998887 443 222222333444554444 58899999999999999887
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC---CceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD---NRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
.-.. -..++ ++++.|+.+..++.|.++|..+.... .. ....... ..+..+.|. +|...+....+..|.
T Consensus 134 ~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~----~~-I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 134 YSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV----GA-VQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp CSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEE----EE-EECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred CCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE----EE-EEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 5322 23444 46778887777899999998775210 00 1111111 234566766 676555555688999
Q ss_pred EEECCCCeeeEEecCC------------CCCCeEEEEEecCCCEEEEEeC
Q psy3053 739 IWSLENHLMTQQLSDD------------INASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~------------h~~~V~~v~fspdg~~L~s~s~ 776 (917)
+.|..+++.+..+.-. ...-.+.||++|+++.|++++.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999988877521 1245689999998777776664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=6.9e-05 Score=79.37 Aligned_cols=169 Identities=11% Similarity=0.005 Sum_probs=122.1
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCc--eEEEEEeCCCEEEEEeCCCeEE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGN--NCMLNVYDLTTGMQVCNKVFEEK--LLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl~tg~~i~~~~~~~~--i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
+.+.++..+.......++|++++...++.+. ++.|+++|+.+++.+........ ...++++++..+++.-.++.+.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence 4555564222244689999998754444443 57999999999999988775543 3456777764455666789999
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-----CCEEEEEEcCCCCEEEEE
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-----DAISCVAWDEKRKRLISG 896 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-----~~V~slafSpdg~~LaSg 896 (917)
++|..+++.+.++......-..+++||+.++++..++.|.++|..+.+.+..+.-.. ..+..+.|. +|...+..
T Consensus 90 viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp EEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 999999999999864322335578899888888788999999999999888775322 236788888 77555555
Q ss_pred eCCCcEEEEecCcc-eEEEE
Q psy3053 897 NLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 897 s~DG~V~IWdl~~~-ll~~L 915 (917)
..++.|.+-|..+. .+..+
T Consensus 169 ~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEE
Confidence 56789999999754 44544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00015 Score=88.79 Aligned_cols=246 Identities=11% Similarity=0.001 Sum_probs=134.8
Q ss_pred cCCc-ceEEEEEe-CCCcEEEEEec-CC----ceEEEeccCC-ceeeeeeccccceEEEEEeCCCCEEEEEecc-----c
Q psy3053 578 SHKE-AITAVAIC-GEGISVASVGR-DA----MLKIHSLKTG-RQERSAVLSSMTLSSLCILPDNCTMLVGCWD-----S 644 (917)
Q Consensus 578 ~H~~-~Vtsv~fS-pdg~~Lasgs~-Dg----~I~IWd~~t~-~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D-----g 644 (917)
+|.- .+.+.+|| |||++||.+.. +| .|.++|+.++ +.+... . .....+++|+||++.|+....| .
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~-~~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-V-SGTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-E-EEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-c-cCceeeEEEecCCCEEEEEEECCCCCCC
Confidence 3443 67889999 99998875543 33 4999999988 633211 1 1124578899999988887765 3
Q ss_pred EEEEEEeccCee--eEEec-cCCCceeEEEecCCCCEEEEEEC---CCeEEEEeCCCCCCCccCCcceeee-ccCCCceE
Q psy3053 645 CVVIYDVECGRI--VTELA-GHEDAISCVAWDEKRKRLISGSW---DCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIK 717 (917)
Q Consensus 645 ~I~Iwdl~tg~~--i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~ 717 (917)
.|+++++.++.. ...+. .+......+.|+|||++|+..+. ...|.++|+.++.... ..... ........
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~----~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN----TLEIVRPREKGVRY 323 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC----CEEESSCCCTTCCE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc----eeEEeecCCCCceE
Confidence 688888877642 22222 23345678899999998887663 3467788886541110 00111 12234445
Q ss_pred EEEEeCCCCEEEEEECC----CeEEEEECCCC-eeeE-EecCCCCCCeEEEEEecCCCEEEEEeCCCe--EEEEEC----
Q psy3053 718 CLAISKDNNQLAVGTEA----GELIIWSLENH-LMTQ-QLSDDINASVNGVLFSEDGCRVLSCGNNCM--LNVYDL---- 785 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~d----G~I~iwDl~~~-~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~--I~iwDl---- 785 (917)
++.|+..+.+++.+..+ ..|..+|+.++ .... .+.......+..+.+. .+..+++...++. |.++++
T Consensus 324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQD 402 (751)
T ss_dssp EEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTT
T ss_pred EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEeccccc
Confidence 55555444444444433 36777887653 2222 2221112234455544 2334455566665 555665
Q ss_pred ---CCCeEEEEeecCCc--eEEEEE------eCCCEEEEEeCC---CeEEEEECCCCEE
Q psy3053 786 ---TTGMQVCNKVFEEK--LLCLSW------AGEEKVILGGAL---GMVYLVDLIQVQL 830 (917)
Q Consensus 786 ---~tg~~i~~~~~~~~--i~~l~~------s~~~~lv~gs~d---G~I~vwdl~~~~~ 830 (917)
.++.....+..... +..+.+ +.+..+++.++. +.++.+|+.+++.
T Consensus 403 ~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 403 GVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp SCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34431233333333 333322 223233333332 5678888877653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-05 Score=93.83 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=152.3
Q ss_pred EEEEeC-CCCEEEEEeccc-----------EEEEEEeccCeee--EEec-cCCCceeEEEecCCCCEEEEEEC-CCeEEE
Q psy3053 627 SLCILP-DNCTMLVGCWDS-----------CVVIYDVECGRIV--TELA-GHEDAISCVAWDEKRKRLISGSW-DCTVRV 690 (917)
Q Consensus 627 sl~~sp-d~~~Lasgs~Dg-----------~I~Iwdl~tg~~i--~~l~-~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~v 690 (917)
++++.+ ++++++.|+.++ .+.+||..+++.. ..+. .+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 6889999887532 2222 23334456777889999999984 458999
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CC-----CeEEEEECCCCeeeEEec---CCCCCCeEE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EA-----GELIIWSLENHLMTQQLS---DDINASVNG 761 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~d-----G~I~iwDl~~~~~~~~l~---~~h~~~V~~ 761 (917)
||..+.. .. ... .......-.+++..+++++++.|+ .+ ..+.+||..+.+-...-. ......-..
T Consensus 270 yd~~t~~--W~---~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 270 YDSSSDS--WI---PGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343 (656)
T ss_dssp EEGGGTE--EE---ECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred ecCcCCc--ee---ECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc
Confidence 9987652 00 000 111111223455667899999998 34 468999998876443210 000000000
Q ss_pred EEEecCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecC----------CceEEEEEe--CCCEEEEEeCCC--
Q psy3053 762 VLFSEDGCRVLSCGNN---------CMLNVYDLTTGMQVCNKVFE----------EKLLCLSWA--GEEKVILGGALG-- 818 (917)
Q Consensus 762 v~fspdg~~L~s~s~D---------g~I~iwDl~tg~~i~~~~~~----------~~i~~l~~s--~~~~lv~gs~dG-- 818 (917)
..+..++...+.++.+ ..+..||..+.......... ..-.++.+. .+..+++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 1122345555555444 35778888776543322111 112333332 343556666432
Q ss_pred ---------eEEEEECCCCEEEEEE--ecCCC--ceE-EEeecCCEEEEEeCC-----------CeEEEEECcCCeEEEE
Q psy3053 819 ---------MVYLVDLIQVQLLKQV--RAHKD--AVL-SLHFDNCTMLVGCWD-----------SCVVIYDVECGRIVTE 873 (917)
Q Consensus 819 ---------~I~vwdl~~~~~i~~l--~~h~~--~V~-sis~dg~~Lasgs~D-----------G~I~Iwdl~tg~~l~~ 873 (917)
.+.+||..+....... ..... ... ++.+++++++.|+.+ ..+.+||..+++....
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 6888888776654432 11221 223 335699999999864 4689999988765432
Q ss_pred e--cCCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 874 L--AGHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 874 l--~~h~~~V~slafSpdg~~LaSgs~ 898 (917)
- ........+..+.|+|+.++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 1 111122344566799999999985
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0023 Score=69.87 Aligned_cols=268 Identities=12% Similarity=0.053 Sum_probs=149.3
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee----ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV----LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~----~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
...+.+|.+.+++..++ ++.+|.| +...+.|+.=.... .....+.++.+.+ +..++ ++.++.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 34688999988777776 4566754 33333343211111 1234678888876 44444 455665433 333344
Q ss_pred eeEEec---cCCCceeEEEecCCCCEEEEEECCCeE-EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 656 IVTELA---GHEDAISCVAWDEKRKRLISGSWDCTV-RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 656 ~i~~l~---~H~~~Vt~l~~spd~~~L~Sgs~DgtI-~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
.-.... .+.+.+..+.+.+++..++.+ .+|.| +-.| .+ ... .. ........+..+++.+++.+++++
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG-~tW---~~--~~~~~~~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SG-KNW---QA--LVQEAIGVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TT-SSE---EE--EECSCCCCEEEEEECTTSCEEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CC-CCC---EE--eecCCCcceEEEEEcCCCcEEEEE
Confidence 322222 234567788877666555544 46644 2222 12 111 11 112344578899999998877766
Q ss_pred ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-----CceEEEEEe
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-----EKLLCLSWA 806 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-----~~i~~l~~s 806 (917)
. +|.+..-+-..+..-..+.......+..+++.+++..+ .++.+|.+.+.+...|+........ ..+.++.+.
T Consensus 181 ~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 181 S-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp T-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred C-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 4 45444432111222222222455678899999988655 5556788777643334433332222 347888888
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEec---CCCceEEEee-cCCEEEEEeCCCeEEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRA---HKDAVLSLHF-DNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~---h~~~V~sis~-dg~~Lasgs~DG~I~Iwd 864 (917)
+++.+++++.+|.+ .+....++.-..+.. ....+.++.+ ++..+++++.+|.|.-++
T Consensus 259 ~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp SSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred CCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 77778877778877 344544543333331 2345566644 456677788889776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00018 Score=88.10 Aligned_cols=239 Identities=9% Similarity=0.014 Sum_probs=137.3
Q ss_pred ceEEEEEe-CCCCEEEEEec-c----cEEEEEEeccC-eeeE-EeccCCCceeEEEecCCCCEEEEEECC-----CeEEE
Q psy3053 624 TLSSLCIL-PDNCTMLVGCW-D----SCVVIYDVECG-RIVT-ELAGHEDAISCVAWDEKRKRLISGSWD-----CTVRV 690 (917)
Q Consensus 624 ~V~sl~~s-pd~~~Lasgs~-D----g~I~Iwdl~tg-~~i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~v 690 (917)
.+...+|| |||++||.+.. + ..|+++|+.+| +.+. .+. .....++|+||++.|+..+.| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 99998886543 2 35999999998 6321 111 124578999999988877765 25777
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---CCeEEEEECCCCe-ee--EEecCCCCCCeEEEEE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE---AGELIIWSLENHL-MT--QQLSDDINASVNGVLF 764 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~---dG~I~iwDl~~~~-~~--~~l~~~h~~~V~~v~f 764 (917)
+++.++... ...............+.|+|||+.|+..+. ...|.++|+.++. .. ..+.........++.|
T Consensus 252 ~~lgt~~~~----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSE----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGG----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EECCCCchh----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 887654110 011111122334668899999998887653 3468889998752 22 4444334445555555
Q ss_pred ecCCCEEE-EEeCC----CeEEEEECCCC-eEEE-EeecCC--ceEEEEEeCCCEEEEEeCCCe--EEEEEC-------C
Q psy3053 765 SEDGCRVL-SCGNN----CMLNVYDLTTG-MQVC-NKVFEE--KLLCLSWAGEEKVILGGALGM--VYLVDL-------I 826 (917)
Q Consensus 765 spdg~~L~-s~s~D----g~I~iwDl~tg-~~i~-~~~~~~--~i~~l~~s~~~~lv~gs~dG~--I~vwdl-------~ 826 (917)
+. |..|+ .+..+ ..|..+|+.++ .... .+.... .+..+++.++..+++...+|. |.++++ .
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEeccccccccc
Confidence 44 55554 44333 36777787652 2111 122222 356677776645566666775 556665 3
Q ss_pred CCEEEEEEec-CCCceEEE------eecCC-EEEEEeCC---CeEEEEECcCCeE
Q psy3053 827 QVQLLKQVRA-HKDAVLSL------HFDNC-TMLVGCWD---SCVVIYDVECGRI 870 (917)
Q Consensus 827 ~~~~i~~l~~-h~~~V~si------s~dg~-~Lasgs~D---G~I~Iwdl~tg~~ 870 (917)
+++....+.. ....+..+ ++++. ++++.+.. +.+..+|+.+++.
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 3331233321 12234455 23544 44444332 4677778777653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0067 Score=77.33 Aligned_cols=315 Identities=15% Similarity=0.148 Sum_probs=175.8
Q ss_pred CcceEEEEEeCC------CcEEEEEec-CCceEEEeccCCceeeeeeccc-cceEEEEEe--CCCCEEEEEecccEEEEE
Q psy3053 580 KEAITAVAICGE------GISVASVGR-DAMLKIHSLKTGRQERSAVLSS-MTLSSLCIL--PDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 580 ~~~Vtsv~fSpd------g~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~s--pd~~~Lasgs~Dg~I~Iw 649 (917)
.+.|+|+++.+. +.+++.|.. |++++|+++.+.+.+....... ....++.+. ....+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999864 368999996 9999999998766554333221 223344333 234578899999998766
Q ss_pred Eec--cCeeeE---EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 650 DVE--CGRIVT---ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 650 dl~--tg~~i~---~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
.++ +|.... ..-| ..++.-..+...+..-+-+..+....++.-... ..........--....|+.+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~--------l~~s~l~~~~v~~~~~F~se 703 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK--------LVFSNVNLKEVNYMCPLNSD 703 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSS--------EEEEEBSSSCCCEEEEECCS
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCc--------eEEeccChHHhceEeccCcc
Confidence 654 454432 1223 345544444433333333333444444432211 11111111111123344432
Q ss_pred C--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-------------------------
Q psy3053 725 N--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN------------------------- 777 (917)
Q Consensus 725 g--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D------------------------- 777 (917)
. +-++..+ ++.++|..+........-.-+....+..++++|+.+.++.+..+
T Consensus 704 ~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 704 GYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp SSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred cCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 2 3344333 45688887754322222211345678888888877765543311
Q ss_pred ------------------------CeEEEEECCCCeEEEEeecC--CceEEEEEe-----CCCEEEEEe----------C
Q psy3053 778 ------------------------CMLNVYDLTTGMQVCNKVFE--EKLLCLSWA-----GEEKVILGG----------A 816 (917)
Q Consensus 778 ------------------------g~I~iwDl~tg~~i~~~~~~--~~i~~l~~s-----~~~~lv~gs----------~ 816 (917)
+.+++.|..+.+.+..+... +.+.|++.- +...+++|+ .
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 24677887777777666554 335555532 235788876 3
Q ss_pred CCeEEEEECCCCEEEEEE-ecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCeEEE-EecCCCCCEEEEEEcCCCCEE
Q psy3053 817 LGMVYLVDLIQVQLLKQV-RAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l-~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~~l~-~l~~h~~~V~slafSpdg~~L 893 (917)
.|.|.++++.+++..... ....++|+++. ++| +|++|- ..+|++|++...+.+. ....+. .|..+.....+.++
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I 939 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFI 939 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEE
Confidence 589999998755432221 23478899995 566 444443 4689999998665433 221121 23333333357788
Q ss_pred EEEeCCCcEEEEec
Q psy3053 894 ISGNLVGAPKLYAT 907 (917)
Q Consensus 894 aSgs~DG~V~IWdl 907 (917)
+.|+.-..|.+...
T Consensus 940 ~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 940 LVGDLMRSVLLLAY 953 (1158)
T ss_dssp EEEESSBCEEEEEE
T ss_pred EEEEhhheEEEEEE
Confidence 88887777776554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0052 Score=66.72 Aligned_cols=226 Identities=8% Similarity=-0.051 Sum_probs=138.7
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-EecccEEEEEEecc----CeeeEEeccCCCceeEEEecCC
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDSCVVIYDVEC----GRIVTELAGHEDAISCVAWDEK 675 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg~I~Iwdl~t----g~~i~~l~~H~~~Vt~l~~spd 675 (917)
...|+..++.+.+....+. .......++|++++..|.. -..++.|..++++. ......+...-.....+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3567888887765444333 2344678999987655554 45578999999876 2222223323345678999865
Q ss_pred CCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--CeEEEEECCCCeeeEEec
Q psy3053 676 RKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA--GELIIWSLENHLMTQQLS 752 (917)
Q Consensus 676 ~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d--G~I~iwDl~~~~~~~~l~ 752 (917)
+..| ++-...+.|.+.+..... ..............++++|.+..+..+... +.|...++... ....+.
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~ 159 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV 159 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCc-------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE
Confidence 5544 555667899999986431 111111233567899999976666555443 68888888643 333332
Q ss_pred CCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 753 DDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 753 ~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
...-.....+++++++..|..+. ..+.|..+|............ ......+++..+..+++....+.|..++..++
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence 13345678999999877776655 557899999864322211121 23466777776545555566788999998777
Q ss_pred EEEEEEe
Q psy3053 829 QLLKQVR 835 (917)
Q Consensus 829 ~~i~~l~ 835 (917)
+.+..+.
T Consensus 240 ~~~~~i~ 246 (316)
T 1ijq_A 240 SDVNLLA 246 (316)
T ss_dssp CCCEEEE
T ss_pred cceEEEe
Confidence 6555554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0021 Score=71.04 Aligned_cols=245 Identities=8% Similarity=-0.034 Sum_probs=147.9
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~ 658 (917)
.+..+|.+..+++.+++ + ....|+..++........+. .......++|++.+..|..+ ...+.|..++.+.+....
T Consensus 33 ~d~~~C~~~~~~~~ll~-~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEPVLLF-A-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCCEEEE-E-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCceeEe-e-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 34455666666443333 3 34557777776544333222 23346789999766555544 457889999988765444
Q ss_pred EeccCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CC-C
Q psy3053 659 ELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EA-G 735 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~d-G 735 (917)
.+.........+++.+.+..| ++-...+.|.+.++.... ........-.....++++|.+..+..+. .. +
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 443333456788998755544 555567889999986541 1111122335678999999666555444 44 7
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~ 813 (917)
.|...++.... ...+....-.....++++|++..|..+. ..+.|..+|+.......... .......+++..+..+++
T Consensus 183 ~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~t 261 (349)
T 3v64_C 183 RIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 261 (349)
T ss_dssp EEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEe
Confidence 88888887543 3333223345678999998776666554 46789999986533222121 223456677765544555
Q ss_pred EeCCCeEEEEECCCCEEEEEEe
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~ 835 (917)
-...+.|..++..+++....+.
T Consensus 262 d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCeEEEEEccCCCccEEec
Confidence 5566788888866665544443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00051 Score=71.41 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=121.6
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECCCCeEEEEeecCCce--EEEEEeCCCEEEEEeCCCeEE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--CMLNVYDLTTGMQVCNKVFEEKL--LCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--g~I~iwDl~tg~~i~~~~~~~~i--~~l~~s~~~~lv~gs~dG~I~ 821 (917)
+.+.++......-...+.|++ +.+..+++.+ +.|+.+|+.+++.+......... ..++..++..+++.-.++.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 455566534456678999986 5556666664 48999999999999988877654 345666764556666789999
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-----CCEEEEEEcCCCCEEEEE
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-----DAISCVAWDEKRKRLISG 896 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-----~~V~slafSpdg~~LaSg 896 (917)
++|..+.+.+.++..... -..++++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+..+..
T Consensus 89 v~D~~tl~~~~ti~~~~~-Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGE-GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp EEETTTTEEEEEEECSSC-CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEECCcCcEEEEEeCCCC-ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 999999999999975433 35667888888888889999999999999888775422 345667766 66655555
Q ss_pred eCCCcEEEEecCcc-eEEEE
Q psy3053 897 NLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 897 s~DG~V~IWdl~~~-ll~~L 915 (917)
-.+..|.+-|.++. .+..+
T Consensus 167 w~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEE
Confidence 46778888888754 44443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00082 Score=70.69 Aligned_cols=206 Identities=10% Similarity=0.088 Sum_probs=133.6
Q ss_pred eeccCCcceEEEEEeCCCcEEEE-EecCCceEEEeccCCceeeeeecc-ccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 575 FCHSHKEAITAVAICGEGISVAS-VGRDAMLKIHSLKTGRQERSAVLS-SMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Las-gs~Dg~I~IWd~~t~~~~~~~~~~-~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
.+.+-.+.+..++++|+++.|++ ...++.|...|.. ++.++.+... ......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 44555568999999998776655 6678888888887 7777776543 2456778888888776765567889999887
Q ss_pred cCee---eEEec------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-----eccCCCceEE
Q psy3053 653 CGRI---VTELA------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-----QLDLDNRIKC 718 (917)
Q Consensus 653 tg~~---i~~l~------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-----~~~h~~~V~~ 718 (917)
.... +.... ........++|+|.++.|+++.......+|.+...... . ...... ....-..+.+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-~-~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-N-ELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-S-CCEEEECHHHHHTCCSSCCCE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-C-ceeeecchhhccccccCCcee
Confidence 5432 22221 13445689999999888888776665666665421000 0 001110 0112345789
Q ss_pred EEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 719 LAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDI--------NASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 719 l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h--------~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
++++|.. ++++.+..+..+..+|... +.+..+.-.. -.....|+|.++|+. ..+++.+.++.+.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 9999965 4555566677888999764 4554443111 136789999999974 44477777777754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00089 Score=72.25 Aligned_cols=230 Identities=11% Similarity=0.011 Sum_probs=135.1
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc--cEEEEEEeccCeeeE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--SCVVIYDVECGRIVT 658 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--g~I~Iwdl~tg~~i~ 658 (917)
....+++++++|+++++-..++.|..||...+ ....+.. ......+++.++++++++.... ..|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999987666667889999987653 3332322 3457789999999866655432 246667777776543
Q ss_pred Eecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-CCccee--eeccCCCceEEEEEeCCCCEEEEE-EC
Q psy3053 659 ELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK-PSKSLV--SQLDLDNRIKCLAISKDNNQLAVG-TE 733 (917)
Q Consensus 659 ~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~-~~~~~~--~~~~h~~~V~~l~~spdg~~Lasg-s~ 733 (917)
.... .......++..+++..+++-+.++.|.++|...+..... ...... .....-.....+ +++++.+.++ +.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 2221 122234555555554455544688888888754310000 000000 000111234455 7888766554 45
Q ss_pred CCeEEEEECCC-Cee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE--EeecC-CceEEEEEe-
Q psy3053 734 AGELIIWSLEN-HLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC--NKVFE-EKLLCLSWA- 806 (917)
Q Consensus 734 dG~I~iwDl~~-~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~--~~~~~-~~i~~l~~s- 806 (917)
.+.|..+++.. +.. ...+. .......++++++|++.++....+.|.++|.. |+... ..... ....++++.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred CCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 68899999874 321 11111 11345678999999887777777899999975 55432 23333 558888887
Q ss_pred --CC-CEEEEEeCC
Q psy3053 807 --GE-EKVILGGAL 817 (917)
Q Consensus 807 --~~-~~lv~gs~d 817 (917)
++ +.+++++..
T Consensus 265 ~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 265 TEGDCTAIYVVTNG 278 (306)
T ss_dssp STTTTTEEEEEECT
T ss_pred ccCCCCEEEEECCC
Confidence 44 455555443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0067 Score=66.15 Aligned_cols=270 Identities=9% Similarity=0.043 Sum_probs=151.1
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec----cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~----~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
..+.++.+.+++..+++ +.+|.| +...+.|+.-.... .....+.++.+.+ + .++.++.++.|.. ..+.+ .
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG-~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGG-Q 109 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTT-S
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCC-C
Confidence 35778888777777774 456655 33344443222221 1244688999986 3 4444556675443 22222 1
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
... .......+...+..+.+.+++..++++ .+|.|.. ..+.++.-..........+..+++.+++..++++...+
T Consensus 110 tW~---~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 110 SWS---QIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp SCE---ECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred Cce---ECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCc
Confidence 111 111111123456778877777666554 4565432 33345444444335566789999999988776665444
Q ss_pred eEEEEEC--CCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec----CCCceEEEee--cCCE
Q psy3053 779 MLNVYDL--TTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA----HKDAVLSLHF--DNCT 850 (917)
Q Consensus 779 ~I~iwDl--~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~----h~~~V~sis~--dg~~ 850 (917)
..+-.|- .+-+.+. ......+..+.+.+++.+++++.+|.+++.+...++.-..+.. +...+.++.+ ++..
T Consensus 185 ~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp EEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred EEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 3444442 2233332 2334567888888888888888899888765333443333321 2234677744 4555
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELA---GHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~---~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+++ +.+|.| .+..+.|+.-..+. .....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 264 ~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 264 WLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 554 457766 45555555444343 234567888887554 5777788997766553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0093 Score=67.08 Aligned_cols=236 Identities=8% Similarity=-0.063 Sum_probs=148.0
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccC----eeeEEeccCCCceeEEEecC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECG----RIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg----~~i~~l~~H~~~Vt~l~~sp 674 (917)
....|+..++........+ .....+..++|++.+..|..+ ...+.|+.++++.. .....+.........+++.+
T Consensus 90 ~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp ETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred ccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 3467888888765443332 234456789999866655555 45788988888752 23333333445678899987
Q ss_pred C-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEe
Q psy3053 675 K-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQL 751 (917)
Q Consensus 675 d-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l 751 (917)
. ++..++-+..+.|.+.++.... ..............++++|.+..|..+.. .+.|...++.........
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred cCCceEEEECCCCeEEEEeCCCCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 4 4444555567889999886541 11111223345789999997766665553 378999988754433333
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
. ..-.....+++++++..|..+. ..+.|..+|+........... -.....++...+..+++....+.|..+|..+
T Consensus 242 ~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 242 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred E-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 3 3345788999998877777665 467899999865433222221 2346677777775666666778899999888
Q ss_pred CEEEEEEecCCCceEEE
Q psy3053 828 VQLLKQVRAHKDAVLSL 844 (917)
Q Consensus 828 ~~~i~~l~~h~~~V~si 844 (917)
++.+..+.........+
T Consensus 321 G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 321 GSDVNLLAENLLSPEDM 337 (400)
T ss_dssp CCCCEEEECSCSCEEEE
T ss_pred CCceEEEecCCCCCceE
Confidence 87666665443334443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0038 Score=69.95 Aligned_cols=242 Identities=7% Similarity=-0.065 Sum_probs=147.4
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
-+|.+..+.+ +|+.+ ....|+..++..+....... .......++|.+.+..|. +-...+.|+.++.+.+.....+.
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3455555544 33333 34568888877654433332 233467899997655554 44567889999988765444444
Q ss_pred cCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-C-CeEE
Q psy3053 662 GHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-A-GELI 738 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-d-G~I~ 738 (917)
........+++.+.+..| ++-...+.|.+.++.... ........-.....++++|.+..|..+.. . +.|.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 333456778888755555 455556788888876431 11111223356789999997766655543 3 6788
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeC
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~ 816 (917)
..++.......... ..-.....++++|++..|..+. ..+.|..+|+.......... .......+++..+..+++...
T Consensus 229 r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~ 307 (386)
T 3v65_B 229 ASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 307 (386)
T ss_dssp EEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETT
T ss_pred EEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCC
Confidence 88887543333332 3345678999998766666554 56789999986433222221 233466777766655566666
Q ss_pred CCeEEEEECCCCEEEEEEe
Q psy3053 817 LGMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~ 835 (917)
.+.|..++..+++....+.
T Consensus 308 ~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCcceEEEc
Confidence 7888888876666555554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0017 Score=68.20 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=135.1
Q ss_pred eeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
+.+-...++.++++|++..|+ +...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 334445689999999866554 56778899999998 888777642 224678889988887767766778899988765
Q ss_pred CCCCccCCccee---eeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC---CeeeEEec------CCCCCCeEEEE
Q psy3053 696 SWSHMKPSKSLV---SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN---HLMTQQLS------DDINASVNGVL 763 (917)
Q Consensus 696 ~~~~~~~~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~---~~~~~~l~------~~h~~~V~~v~ 763 (917)
...... ..... ...........++++|.++.|.++.......+|.... ...+.... ......+.+++
T Consensus 101 ~~~i~~-~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 101 NSEVKI-LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TCCEEE-EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCeeee-eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 421000 00000 0112345578999999998887777665555555431 11112121 12334678999
Q ss_pred EecCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCC----------ceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 764 FSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEE----------KLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 764 fspdg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~----------~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
++|.. .+++....++.+.++|.. |+.+....... +.-.++++++|.+.+.+..+.++.+..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 99964 455556667788899965 55666655442 567899999988888888887777754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00042 Score=83.47 Aligned_cols=237 Identities=9% Similarity=0.008 Sum_probs=139.3
Q ss_pred EEEecC-CCCEEEEEECCC-----------eEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEeCCCCEEEEEEC-C
Q psy3053 669 CVAWDE-KRKRLISGSWDC-----------TVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAISKDNNQLAVGTE-A 734 (917)
Q Consensus 669 ~l~~sp-d~~~L~Sgs~Dg-----------tI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~Lasgs~-d 734 (917)
++++.+ +++.++.|+.+. .+.+||..++.- . .+... ..+.....++++..+++++++|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--~---~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--S---DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--C---CCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--E---eCcccCCCCCCccccccCCCCCCEEEeCCCCC
Confidence 556666 888888887643 588899877621 1 11111 122333445777889999999984 4
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CC-----CeEEEEECCCCeEEEEe-----ecCCc-eEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NN-----CMLNVYDLTTGMQVCNK-----VFEEK-LLC 802 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~D-----g~I~iwDl~tg~~i~~~-----~~~~~-i~~ 802 (917)
+.+.+||..+.+-...-.......-.+++..++|+.++.|+ .+ ..+.+||..+++-.... ..... -.+
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 68999999876543322211122224556667999999988 34 46999999887644321 11100 000
Q ss_pred EEEeCCCEEEEEeC---------CCeEEEEECCCCEEEEEEecCCC---------ceEEE---eecCCEEEEEeCCC---
Q psy3053 803 LSWAGEEKVILGGA---------LGMVYLVDLIQVQLLKQVRAHKD---------AVLSL---HFDNCTMLVGCWDS--- 858 (917)
Q Consensus 803 l~~s~~~~lv~gs~---------dG~I~vwdl~~~~~i~~l~~h~~---------~V~si---s~dg~~Lasgs~DG--- 858 (917)
+....+..++.|+. ...+..||..+.........+.. .-.++ ..++++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 01011223344443 34577888877654433322211 12233 23788888887543
Q ss_pred --------eEEEEECcCCeEEEEe--cCCCCCE-EEEEEcCCCCEEEEEeCC-----------CcEEEEecCcc
Q psy3053 859 --------CVVIYDVECGRIVTEL--AGHEDAI-SCVAWDEKRKRLISGNLV-----------GAPKLYATEFY 910 (917)
Q Consensus 859 --------~I~Iwdl~tg~~l~~l--~~h~~~V-~slafSpdg~~LaSgs~D-----------G~V~IWdl~~~ 910 (917)
.|.+||..+.+..... ..+..+. .+++..|+|+.++.||.+ ..+.+||.+..
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 6888888877765443 2223332 344667899999999865 46889998654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0044 Score=67.48 Aligned_cols=227 Identities=7% Similarity=-0.040 Sum_probs=139.9
Q ss_pred CCceEEEeccCCceee-eeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeee-EEeccCCCceeEEEecCCCC
Q psy3053 601 DAMLKIHSLKTGRQER-SAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIV-TELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~-~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i-~~l~~H~~~Vt~l~~spd~~ 677 (917)
...|+..++....... ...........++|.+.+..| ++-...+.|..++.+.+... ..+...-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4567888887653211 111122345678898865444 45456788999998766321 22222234567888887444
Q ss_pred -EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCC
Q psy3053 678 -RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 678 -~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~ 754 (917)
..++-...+.|.+.+..... ..............++++|.+..+..+.. .+.|...++.......... .
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~-------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~ 163 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSL-------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S 163 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCS-------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred eEEEEECCCCEEEEEECCCCc-------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-C
Confidence 44555567899999986541 11111133456789999997666666553 5788888886433222222 2
Q ss_pred CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
.-...+.+++++++..|..+. ..+.|..+|+.......... .......+++..+..+++-...+.|..++..+++...
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 345678999999776666554 56789999986432221111 2345677788777566666677889999987776555
Q ss_pred EEe
Q psy3053 833 QVR 835 (917)
Q Consensus 833 ~l~ 835 (917)
.+.
T Consensus 244 ~i~ 246 (318)
T 3sov_A 244 EIH 246 (318)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0026 Score=72.41 Aligned_cols=153 Identities=7% Similarity=-0.018 Sum_probs=96.5
Q ss_pred ceEEEEEeC-CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc----c-EEEEEEeccCe
Q psy3053 582 AITAVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----S-CVVIYDVECGR 655 (917)
Q Consensus 582 ~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g-~I~Iwdl~tg~ 655 (917)
....++++| ++..|+.+...+.|+.+|..++.... +.........++++++++.|.++... . .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 456889998 45667776666888899987665433 33344456789999999966666542 1 3433443 332
Q ss_pred ee--EEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE-EEE
Q psy3053 656 IV--TELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL-AVG 731 (917)
Q Consensus 656 ~i--~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L-asg 731 (917)
.. ..+.. ......++++| ++..+++-..++.|..++..+... ..............++++|+|+.| ++-
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------TPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------EEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------EEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 22 22221 23456788999 666666666778999999875410 011122223457899999999955 444
Q ss_pred ECCCeEEEEECC
Q psy3053 732 TEAGELIIWSLE 743 (917)
Q Consensus 732 s~dG~I~iwDl~ 743 (917)
...+.|..++..
T Consensus 289 ~~~~~I~~~~~d 300 (430)
T 3tc9_A 289 VNQHYILRSDYD 300 (430)
T ss_dssp TTTTEEEEEEEE
T ss_pred CCCCEEEEEeCC
Confidence 567889998765
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.11 Score=63.39 Aligned_cols=323 Identities=14% Similarity=0.075 Sum_probs=183.7
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-ec----cccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VL----SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~----~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
..|.++....+|...+ |+.+| +..++..+++..... .. ....|.++...+++..|..|+. +-+..++..+++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888888887555 44444 667776655432111 11 1224778877777776666664 458888887765
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
...........|.++....++.+.+ |+. +-+.+++..+..-............-....|.++....+|. |-+|+..|
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G 299 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG 299 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc
Confidence 4322111234588888877766544 454 45778886553100000000000001234688888887776 55566667
Q ss_pred eEEEEECCCCeeeEEec----CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEee--------cCCceE
Q psy3053 736 ELIIWSLENHLMTQQLS----DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNKV--------FEEKLL 801 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~~--------~~~~i~ 801 (917)
+.++.....-...... ......|.++.-..+|.+-+ |+.+| +..++..++. ...... ....|.
T Consensus 300 -l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 376 (758)
T 3ott_A 300 -ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR 376 (758)
T ss_dssp -EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEE
T ss_pred -ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceE
Confidence 5444332211111110 11234688888877776544 45554 6666655431 111111 123588
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-c-----CCCceEEEeec-CCEEEEEeCCCeEEEEECcC------C
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-A-----HKDAVLSLHFD-NCTMLVGCWDSCVVIYDVEC------G 868 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~-----h~~~V~sis~d-g~~Lasgs~DG~I~Iwdl~t------g 868 (917)
++.-+.++.+.+|+ ++-+..+|..+++...-.. . ....|.++..| ...|..|+..+-+..+|..+ +
T Consensus 377 ~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~ 455 (758)
T 3ott_A 377 HIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSG 455 (758)
T ss_dssp EEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSS
T ss_pred EEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCc
Confidence 89888888899888 5679999998876543221 1 13457788554 34577787766688888653 1
Q ss_pred eEE--EEec---C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEE
Q psy3053 869 RIV--TELA---G-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLY 913 (917)
Q Consensus 869 ~~l--~~l~---~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~ 913 (917)
... ..+. + ....|.++...++|...+.++..+-|..++.+.....
T Consensus 456 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 456 QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 121 1211 1 1235899999999987764444555888887655443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.066 Score=63.73 Aligned_cols=321 Identities=7% Similarity=-0.066 Sum_probs=171.5
Q ss_pred cceEEEEEeCCCcEEEE-EecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec--ccEEEEEEeccCeee
Q psy3053 581 EAITAVAICGEGISVAS-VGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW--DSCVVIYDVECGRIV 657 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Las-gs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~--Dg~I~Iwdl~tg~~i 657 (917)
.....+++.+.+..|+. -...+.|.+.+++...........-.....+++.|.+..|..+.+ .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 46778999996655544 445788999998754332222233334578899997666666554 356666666543333
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
......-.....+++++++..|+.+. ..+.|...|+....... ... +.......+++..+ .+.++-...+.
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~-----~~~--~~~~~P~gi~~~~~-~ly~td~~~~~ 235 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-----VVK--GSLPHPFALTLFED-ILYWTDWSTHS 235 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------------CCCEEESSS-EEEEECTTTCS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE-----EEe--CCCCCceEEEEeCC-EEEEecCCCCE
Confidence 33333345678999998767666654 45678888876542110 110 01112345666544 44444445677
Q ss_pred EEEEECCCCeeeEEecCCCC------------------------CCeEEEEE-----------ecCC-------C-----
Q psy3053 737 LIIWSLENHLMTQQLSDDIN------------------------ASVNGVLF-----------SEDG-------C----- 769 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~------------------------~~V~~v~f-----------spdg-------~----- 769 (917)
|...|..+++....+..... +....+++ .|.| +
T Consensus 236 V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~ 315 (619)
T 3s94_A 236 ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 315 (619)
T ss_dssp EEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSS
T ss_pred EEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCC
Confidence 88888877654433321000 00111111 1111 1
Q ss_pred ---EEEEEeCCCeEEEEECCCCeEE-EEe--ecCCceEEEEEeC-CCEEEEEe-CCCeEEEEECCCCEEEEEEecCCCce
Q psy3053 770 ---RVLSCGNNCMLNVYDLTTGMQV-CNK--VFEEKLLCLSWAG-EEKVILGG-ALGMVYLVDLIQVQLLKQVRAHKDAV 841 (917)
Q Consensus 770 ---~L~s~s~Dg~I~iwDl~tg~~i-~~~--~~~~~i~~l~~s~-~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~h~~~V 841 (917)
+|+.+ ..+.|+..++...... ... ..-..+.++++++ ++.++.+. ..+.|+.+++........+...-...
T Consensus 316 ~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p 394 (619)
T 3s94_A 316 ATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP 394 (619)
T ss_dssp CSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred CceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCc
Confidence 12222 2334555555443211 011 1123467788886 45655554 46788888886543322333222333
Q ss_pred EEE--eecCCE-EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcc
Q psy3053 842 LSL--HFDNCT-MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL--VGAPKLYATEFY 910 (917)
Q Consensus 842 ~si--s~dg~~-Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~--DG~V~IWdl~~~ 910 (917)
..+ .+.++. .++-+..+.|.+.++........+...-....++++.|....|+.+.. .+.|...++++.
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 344 543454 444456788999998754332223333456789999997555555442 356666666654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.037 Score=65.93 Aligned_cols=323 Identities=8% Similarity=-0.053 Sum_probs=173.4
Q ss_pred cceEEEEEeCCCcEEEEEec-CCceEEEeccCCce-eeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeee
Q psy3053 581 EAITAVAICGEGISVASVGR-DAMLKIHSLKTGRQ-ERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~-~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i 657 (917)
+...+++|++.+..|+.+.. .+.|..++.+.... ...+...-.....+++.+.+..| ++-...+.|.+.+++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 34678999997776665554 57788888765432 22222222456789999865544 44556789999998755433
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CC
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EA 734 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~d 734 (917)
..+...-.....|++.|.+..|+.+.. .+.|...++.... ........-.....++++++++.|..+. ..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-------RFIIINSEIYWPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCC
Confidence 333344456788999997666666554 3566666665431 1111112334678999999766665554 45
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee------------cC-----
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV------------FE----- 797 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~------------~~----- 797 (917)
+.|...|+.......... .......++++..+ ...++-...+.|...|..+|+....+. +.
T Consensus 193 ~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~ 270 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN 270 (619)
T ss_dssp CCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCC
T ss_pred CeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCC
Confidence 778888887644332222 12223345666555 334444456778888876664322111 00
Q ss_pred -----------C-----------ceEEEEEe-----C--------CCEEEEEeCCCeEEEEECCCCEEE-EEEe-cCCCc
Q psy3053 798 -----------E-----------KLLCLSWA-----G--------EEKVILGGALGMVYLVDLIQVQLL-KQVR-AHKDA 840 (917)
Q Consensus 798 -----------~-----------~i~~l~~s-----~--------~~~lv~gs~dG~I~vwdl~~~~~i-~~l~-~h~~~ 840 (917)
. ...|.+.. + ...++.-+..+.|+..++...... ..+. ..-..
T Consensus 271 ~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~ 350 (619)
T 3s94_A 271 ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRH 350 (619)
T ss_dssp CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSS
T ss_pred ccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCc
Confidence 0 01111111 0 011222233345555555443211 0111 11234
Q ss_pred eEEEeec--CCEEEEE-eCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCcceE
Q psy3053 841 VLSLHFD--NCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGNLVGAPKLYATEFYLL 912 (917)
Q Consensus 841 V~sis~d--g~~Lasg-s~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La-Sgs~DG~V~IWdl~~~ll 912 (917)
+.++.+| +..|+.+ ...+.|+.++.........+...-.....+++...+..|+ +-+..+.|.+.++++...
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~ 426 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR 426 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE
Confidence 5566553 3444444 4567888888875443333333334567899987555555 445667888888876643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0041 Score=70.72 Aligned_cols=231 Identities=12% Similarity=0.070 Sum_probs=136.5
Q ss_pred ceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-C----eEEE
Q psy3053 666 AISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-G----ELII 739 (917)
Q Consensus 666 ~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-G----~I~i 739 (917)
....++++| ++..|+.+...+.|..+|...+ .+............++++++|+.|.++... + .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--------~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--------YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--------EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--------EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 467889998 4666777666688999998764 222233345668899999999966665542 2 3444
Q ss_pred EECCCCeee--EEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeec--CCceEEEEEeCCCE-EEE
Q psy3053 740 WSLENHLMT--QQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEK-VIL 813 (917)
Q Consensus 740 wDl~~~~~~--~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~-lv~ 813 (917)
.+.. +... ..+. .......++++| +|.++++-..++.|..++..++........ ......+++++++. +++
T Consensus 210 ~~~~-g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 210 LTRE-SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEGG-GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EeCC-Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 4433 2221 2222 123456788999 676666666788999999987765322222 23477899998875 444
Q ss_pred -EeCCCeEEEEECCC--CEE--EEEEecC---C-------------Cc--eEEEe--------ecCCEEEEEeCCCeEEE
Q psy3053 814 -GGALGMVYLVDLIQ--VQL--LKQVRAH---K-------------DA--VLSLH--------FDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 814 -gs~dG~I~vwdl~~--~~~--i~~l~~h---~-------------~~--V~sis--------~dg~~Lasgs~DG~I~I 862 (917)
-...+.|..++... +.. ...+.+. . .+ ...+. .+|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 44568899987653 222 1222221 0 01 11221 12444444455677888
Q ss_pred EECcCCeEEEEecC----C-------------CCCEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q psy3053 863 YDVECGRIVTELAG----H-------------EDAISCVAWDEK-RKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 863 wdl~tg~~l~~l~~----h-------------~~~V~slafSpd-g~~LaSgs~DG~V~IWdl~ 908 (917)
++ .+|........ . -..-..++++|+ +.++++-.....|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 87 34654333211 0 114688999995 5555555566778887764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.018 Score=63.43 Aligned_cols=224 Identities=6% Similarity=-0.115 Sum_probs=133.9
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
...|+..+++.......+.+ ...+.+++|++.+..|+.+ ...+.|..++..... ..............+++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glav 123 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAV 123 (349)
T ss_dssp BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEE
T ss_pred ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEE
Confidence 34577777766554444443 3457899999766666554 456889999987641 11111112234578999
Q ss_pred eCCCCEE-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CC-CeEEEEECCCCeEEEEee-cC
Q psy3053 722 SKDNNQL-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NN-CMLNVYDLTTGMQVCNKV-FE 797 (917)
Q Consensus 722 spdg~~L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~D-g~I~iwDl~tg~~i~~~~-~~ 797 (917)
++.+..| ++-...+.|.+.++.......... ........++++|.+..|..+. .. +.|...++.......... .-
T Consensus 124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 202 (349)
T 3v64_C 124 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 202 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSC
T ss_pred ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 9865544 555556889999987654333332 3445678999999666655544 34 778888876433222211 22
Q ss_pred CceEEEEEeC-CCEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEE-EEEeCCCeEEEEECcCCeEEEEe
Q psy3053 798 EKLLCLSWAG-EEKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTM-LVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 798 ~~i~~l~~s~-~~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~L-asgs~DG~I~Iwdl~tg~~l~~l 874 (917)
.....+++++ ++.+..+ ...+.|..+|+........+.........++.++..+ ++-...+.|..++..+|+....+
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 3478899985 5555554 4567899999865433323333334445554444444 44445678888886666554444
Q ss_pred c
Q psy3053 875 A 875 (917)
Q Consensus 875 ~ 875 (917)
.
T Consensus 283 ~ 283 (349)
T 3v64_C 283 R 283 (349)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.18 Score=61.40 Aligned_cols=316 Identities=13% Similarity=0.122 Sum_probs=177.7
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
...|.++....+|. |..|+.+| +..||..+.+...........|.++.. .++ .|..|+.+ .+..++..+++....
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 35688888887774 55555555 778898765433211112234666543 344 56666665 578888876654332
Q ss_pred ec----cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 660 LA----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 660 l~----~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
.. .....|.++....++...+ |+.+ -+..++..+......... .........|.++....++..|.+|+. +
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLP--VHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCC--CCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCC--CccccccceeEEEEEECCCCEEEEEEC-C
Confidence 11 1234688888877776554 5544 477788655410000000 000001234888888887776666764 4
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee--------cCCceEEEEEeC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV--------FEEKLLCLSWAG 807 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~--------~~~~i~~l~~s~ 807 (917)
-+..+|..+++...... .....|.++....+|.+.+ |+. +-+.+++..++....... ....|.++..+.
T Consensus 212 Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 58889988765432211 1234588888877776554 444 458888887654332211 123488998888
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEe-----cCCCceEEEeec-CCEEEEEeCCCeEEEEECcCCe--EEEEec----
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVR-----AHKDAVLSLHFD-NCTMLVGCWDSCVVIYDVECGR--IVTELA---- 875 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~-----~h~~~V~sis~d-g~~Lasgs~DG~I~Iwdl~tg~--~l~~l~---- 875 (917)
++.+.+|+..| +.++.....-...... .....|.++..| ...|..|+.+| +..++..+++ ....+.
T Consensus 289 ~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp TCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred CCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCc
Confidence 88999999877 5444332111111111 123467777443 23355556554 6666655432 111121
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceE
Q psy3053 876 ---GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLL 912 (917)
Q Consensus 876 ---~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll 912 (917)
-....|.++.-..+|...+ |+ ++-+..++.++...
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~ 404 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF 404 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE
T ss_pred CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE
Confidence 0124588998888887555 44 45688888765443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0078 Score=65.73 Aligned_cols=199 Identities=15% Similarity=0.214 Sum_probs=129.5
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCC----CCE--EEE-Eec---ccEEEEEEec--cCeeeE
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD----NCT--MLV-GCW---DSCVVIYDVE--CGRIVT 658 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd----~~~--Las-gs~---Dg~I~Iwdl~--tg~~i~ 658 (917)
...++++....+-+.+||+ +|+.++.+.. ..+..+..-|+ ++. ++. ... +++|.+|+++ ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456777778889999999 7888887754 34555555552 222 333 333 5789999884 343 44
Q ss_pred Eecc------CC-CceeEEEe--cCC-CC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 659 ELAG------HE-DAISCVAW--DEK-RK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 659 ~l~~------H~-~~Vt~l~~--spd-~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
.+.. .. ..+..+|+ ++. +. +++....+|.+..|++...... .............+.+..+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-YISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-CEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-cccceEEEEecCCCCcceEEEcCCCCe
Confidence 4421 11 45667777 664 43 6888888999999998542111 112233444556678999999999999
Q ss_pred EEEEECCCeEEEEECC-----CCeeeEEecC-CCCCCeEEEEEe--cCCC-EEEEEe-CCCeEEEEECC-CCeEEEEe
Q psy3053 728 LAVGTEAGELIIWSLE-----NHLMTQQLSD-DINASVNGVLFS--EDGC-RVLSCG-NNCMLNVYDLT-TGMQVCNK 794 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~-----~~~~~~~l~~-~h~~~V~~v~fs--pdg~-~L~s~s-~Dg~I~iwDl~-tg~~i~~~ 794 (917)
|.++-++.-|..++.+ +++.+..+.. .....+..+++- ++++ +|++++ .++++.+||.. +.+.+..+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 9999999777777755 3455555432 233478888884 5555 555555 57799999996 55555444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.025 Score=61.24 Aligned_cols=203 Identities=7% Similarity=-0.083 Sum_probs=123.7
Q ss_pred cceEEEEEeCCCcEEEEE-ecCCceEEEeccC---Cceeee-eeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccC
Q psy3053 581 EAITAVAICGEGISVASV-GRDAMLKIHSLKT---GRQERS-AVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasg-s~Dg~I~IWd~~t---~~~~~~-~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg 654 (917)
....+++|++++..|+.+ ...+.|..++..+ +..... +...-.....+++.+.+. +.++-...+.|.+.+.+..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999876655554 4568899998875 122222 222223457888887554 4455566789999998754
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECC--CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWD--CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D--gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.....+.........++++|.+..|+.+... +.|...++.... ........-.....+++++++..|..+.
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-------~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-------eEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 4333333334567899999876666655543 678888875431 1111112234678999999877666555
Q ss_pred -CCCeEEEEECCCCeeeEEecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 733 -EAGELIIWSLENHLMTQQLSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 733 -~dG~I~iwDl~~~~~~~~l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
..+.|..+|+.... ...+.. ........+++. .+..+++....+.|..++..+|+...
T Consensus 183 ~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 183 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 55789999987533 222221 123456778875 45555566667788888877665443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.021 Score=63.74 Aligned_cols=231 Identities=6% Similarity=-0.113 Sum_probs=138.3
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.|+.+. ...|+..++..+.......+ ...+..++|++.+..|+.+ ...+.|..++..... ..........
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~ 159 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLE 159 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCS
T ss_pred eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCC
Confidence 444333 45688888876655444443 3457899999765655544 466889999987541 1111111223
Q ss_pred ceEEEEEeCCCCEE-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEECCCCeEE
Q psy3053 715 RIKCLAISKDNNQL-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-N-CMLNVYDLTTGMQV 791 (917)
Q Consensus 715 ~V~~l~~spdg~~L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-D-g~I~iwDl~tg~~i 791 (917)
....+++++.+..| ++-...+.|.+.++........+. ........++++|.+..|..+.. . +.|..+++......
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 45678999765544 454556789888887544333333 34467789999997666665543 3 67888887644322
Q ss_pred EEee-cCCceEEEEEeC-CCEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCE-EEEEeCCCeEEEEECcC
Q psy3053 792 CNKV-FEEKLLCLSWAG-EEKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT-MLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 792 ~~~~-~~~~i~~l~~s~-~~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~-Lasgs~DG~I~Iwdl~t 867 (917)
.... .-.....+++++ ++.+..+ +..+.|..+|+........+.........++.++.. .++....+.|..++..+
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCC
Confidence 2222 223467899984 4455544 456789999986543333333333445556444444 45555678888888666
Q ss_pred CeEEEEecC
Q psy3053 868 GRIVTELAG 876 (917)
Q Consensus 868 g~~l~~l~~ 876 (917)
|+.+..+..
T Consensus 319 G~~~~~i~~ 327 (386)
T 3v65_B 319 GKNQEIIRN 327 (386)
T ss_dssp CCSCEEEEC
T ss_pred CcceEEEcc
Confidence 765555543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.68 E-value=0.06 Score=60.41 Aligned_cols=239 Identities=7% Similarity=-0.105 Sum_probs=144.3
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
....|+..+++.......+. ....+.+++|++.+..|+.+. ..+.|..+++...... ................++
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCSCEEEEE
T ss_pred ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCCCcccEE
Confidence 34678888887665544443 456788999998666665554 5678888888653100 001111122345678899
Q ss_pred EeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeEEEEee-c
Q psy3053 721 ISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN--NCMLNVYDLTTGMQVCNKV-F 796 (917)
Q Consensus 721 ~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl~tg~~i~~~~-~ 796 (917)
+++.+ ++.++-...+.|.+.++........+. ........+++.|.+..|+.+.. .+.|...++.......... .
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence 99854 455555567889999987655444333 34456789999997666665543 3678888886443322222 2
Q ss_pred CCceEEEEEeC-CCEEEEEe-CCCeEEEEECCCCEEEEEEec--CCCceEEEeecCCEE-EEEeCCCeEEEEECcCCeEE
Q psy3053 797 EEKLLCLSWAG-EEKVILGG-ALGMVYLVDLIQVQLLKQVRA--HKDAVLSLHFDNCTM-LVGCWDSCVVIYDVECGRIV 871 (917)
Q Consensus 797 ~~~i~~l~~s~-~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~--h~~~V~sis~dg~~L-asgs~DG~I~Iwdl~tg~~l 871 (917)
-.....+++++ .+.+..+. ..+.|..+|+........... .-....+++.++..+ ++-...+.|..++..+|+.+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence 24578899984 45555554 567899999865433222222 234455665555544 45556678999997778766
Q ss_pred EEecCCCCCEEEEE
Q psy3053 872 TELAGHEDAISCVA 885 (917)
Q Consensus 872 ~~l~~h~~~V~sla 885 (917)
..+........+++
T Consensus 325 ~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 325 NLLAENLLSPEDMV 338 (400)
T ss_dssp EEEECSCSCEEEEE
T ss_pred EEEecCCCCCceEE
Confidence 65544333344443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.1 Score=59.15 Aligned_cols=230 Identities=12% Similarity=0.066 Sum_probs=131.2
Q ss_pred ceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----eEE
Q psy3053 666 AISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-----ELI 738 (917)
Q Consensus 666 ~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-----~I~ 738 (917)
....++|+|+ +..|+.+...+.|+.+|..++ .............+++++++|+ |.++...+ .+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--------~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--------YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--------EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC--------EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence 4568999984 455655555588999998655 2333333455689999999999 44444322 233
Q ss_pred EEECCCCee-eEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEE-eec--CCceEEEEEeCCCE-EE
Q psy3053 739 IWSLENHLM-TQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCN-KVF--EEKLLCLSWAGEEK-VI 812 (917)
Q Consensus 739 iwDl~~~~~-~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~-~~~--~~~i~~l~~s~~~~-lv 812 (917)
..+...+.. ...+. .......++++| +|.+.++-..++.|+.+|..++..... ... ......+++++++. +.
T Consensus 211 ~~~~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 211 LFTRASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp EECGGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred EEECCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 333222111 01111 234456788999 676666666778899999987765222 221 22234689998764 54
Q ss_pred EE-eCCCeEEEEECC--CCEE--EEEEecC---C------------CceEEEe-----------ecCCEEEEEeCCCeEE
Q psy3053 813 LG-GALGMVYLVDLI--QVQL--LKQVRAH---K------------DAVLSLH-----------FDNCTMLVGCWDSCVV 861 (917)
Q Consensus 813 ~g-s~dG~I~vwdl~--~~~~--i~~l~~h---~------------~~V~sis-----------~dg~~Lasgs~DG~I~ 861 (917)
++ ...+.|+.++.. ++.. ...+.+. . .....+. .+|.+.++-...+.|+
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 44 456889998865 2321 1122221 0 1122333 2344455555567888
Q ss_pred EEECcCCeEEEEecCC------------------CCCEEEEEEc-CCCCEEEEEeCCCcEEEEecC
Q psy3053 862 IYDVECGRIVTELAGH------------------EDAISCVAWD-EKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h------------------~~~V~slafS-pdg~~LaSgs~DG~V~IWdl~ 908 (917)
.++. +|... ++.+. -.....++++ ++|.++++=...+.|+..+++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8874 45443 33221 1236788998 566555555566778877764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.016 Score=65.88 Aligned_cols=201 Identities=6% Similarity=-0.026 Sum_probs=115.7
Q ss_pred ceEEEEEeCC--CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc---c-EEEEEEeccCe
Q psy3053 582 AITAVAICGE--GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD---S-CVVIYDVECGR 655 (917)
Q Consensus 582 ~Vtsv~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D---g-~I~Iwdl~tg~ 655 (917)
.-..++++|+ +..|+.+...+.|+.++..++...... ........++++++++++++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568899985 445555555588999998777654433 344457899999999944443311 1 23333333221
Q ss_pred e-eEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE-E
Q psy3053 656 I-VTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG-T 732 (917)
Q Consensus 656 ~-i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s 732 (917)
. ...+. .-.....++++| ++...++-..++.|..+|..++... ... ...+.......++++|+++.|..+ .
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~----~~~-~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT----EEE-VMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE----EEE-EECSCCSSCEEEEECTTSSEEEEEET
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE----EEE-eccCCCCCcccEEEeCCCCEEEEEeC
Confidence 1 01111 223456788898 6666666556788999988654110 011 111122233579999999955544 4
Q ss_pred CCCeEEEEECC--CCee--eEEecC--C------------CCCCeEEEEE---------ecCCCEEEEEeCCCeEEEEEC
Q psy3053 733 EAGELIIWSLE--NHLM--TQQLSD--D------------INASVNGVLF---------SEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 733 ~dG~I~iwDl~--~~~~--~~~l~~--~------------h~~~V~~v~f---------spdg~~L~s~s~Dg~I~iwDl 785 (917)
..+.|..++.. ++.. ...+.. + .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 56789998865 2321 111110 0 1124567888 667766666666778888885
Q ss_pred CCCeE
Q psy3053 786 TTGMQ 790 (917)
Q Consensus 786 ~tg~~ 790 (917)
+|..
T Consensus 373 -~G~v 376 (433)
T 4hw6_A 373 -EGRV 376 (433)
T ss_dssp -TSEE
T ss_pred -CCCE
Confidence 5543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.2 Score=59.55 Aligned_cols=198 Identities=8% Similarity=-0.053 Sum_probs=124.9
Q ss_pred cceEEEEEeCCCcEEEEEe-cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeE
Q psy3053 581 EAITAVAICGEGISVASVG-RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~ 658 (917)
..+.+++|++.+..|+.+. .++.|..+++........+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 3577999999766665554 57888888876544333333222346688888765544 444557889999987544333
Q ss_pred EeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCC
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAG 735 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG 735 (917)
.+...-....++++.|....|+.+.. .+.|...++.... .......-.....++++++++.|..+. ..+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEEEECSCSSEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--------eEEEECCCCCcceEEEccccCEEEEEECCCC
Confidence 33334456789999986666666553 4677777775541 111123345678999999877666654 457
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
.|...|+..... ..+. .......++++.. +...++-...+.|...|..+|+
T Consensus 189 ~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 189 LIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 899999876443 3333 2234456777765 4444555557888888876654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.011 Score=64.69 Aligned_cols=197 Identities=11% Similarity=0.153 Sum_probs=127.3
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCC----CC---EEEEEEC---CCeEEEEeCCCCCCCccCC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RK---RLISGSW---DCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd----~~---~L~Sgs~---DgtI~vWdl~~~~~~~~~~ 703 (917)
...++.....+-+.+||+ +|+.++.+.. +.+..+..-|+ ++ ++++..+ +.+|.++++..........
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345666666788999999 7998888864 55677766552 22 2333333 5799999774321111100
Q ss_pred cceeeeccCC-CceEEEEE--eCC-CC-EEEEEECCCeEEEEECC-------CCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 704 KSLVSQLDLD-NRIKCLAI--SKD-NN-QLAVGTEAGELIIWSLE-------NHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 704 ~~~~~~~~h~-~~V~~l~~--spd-g~-~Lasgs~dG~I~iwDl~-------~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.......... ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++. ..+.+..+...+....|
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYGRL 194 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTTEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCCeE
Confidence 0000000111 55666777 674 43 67888889999999882 345667776 45688999999998999
Q ss_pred EEEeCCCeEEEEECC-----CCeEEEEeecC---CceEEEEEe--C--CCEEEEEe-CCCeEEEEECC-CCEEEEEEe
Q psy3053 772 LSCGNNCMLNVYDLT-----TGMQVCNKVFE---EKLLCLSWA--G--EEKVILGG-ALGMVYLVDLI-QVQLLKQVR 835 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~-----tg~~i~~~~~~---~~i~~l~~s--~--~~~lv~gs-~dG~I~vwdl~-~~~~i~~l~ 835 (917)
..+-++.-|..++.+ +++.+...... ..+..++.. + .+++++++ .++...+||.. +.+.+..+.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 999999777777754 34555554332 457777774 2 24677766 46799999996 667777664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.56 E-value=0.046 Score=59.32 Aligned_cols=224 Identities=9% Similarity=-0.038 Sum_probs=134.5
Q ss_pred ccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 643 DSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 643 Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
...|+..+++... ....+. ....+.+++|++.+..|+ +-...+.|..++...... .... ....-.....+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----~~~~-~~~~l~~p~gl 84 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----VQNV-VVSGLLSPDGL 84 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----CCEE-EEECCSCCCEE
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----eEEE-EcCCCCCccEE
Confidence 4678888887653 222222 223567899998655554 445667899998865411 0111 11122346789
Q ss_pred EEeCCCC-EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeEEEEe-e
Q psy3053 720 AISKDNN-QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN--NCMLNVYDLTTGMQVCNK-V 795 (917)
Q Consensus 720 ~~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl~tg~~i~~~-~ 795 (917)
++.+.+. +.++-...+.|.++++.......... ........+++.|.+..|..+.. .+.|...++......... .
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9997554 44555567889999987543333332 34566789999997666666552 578888887643222111 1
Q ss_pred cCCceEEEEEeC-CCEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEE-EEEeCCCeEEEEECcCCeEEE
Q psy3053 796 FEEKLLCLSWAG-EEKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTM-LVGCWDSCVVIYDVECGRIVT 872 (917)
Q Consensus 796 ~~~~i~~l~~s~-~~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~L-asgs~DG~I~Iwdl~tg~~l~ 872 (917)
.-.....+++++ ++.+..+ +..+.|..+|+..........+.......++.++..+ .+-...+.|..++..+|+...
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 223467899986 5565554 4568899999864332222233344556665555554 444456889999987776544
Q ss_pred Ee
Q psy3053 873 EL 874 (917)
Q Consensus 873 ~l 874 (917)
.+
T Consensus 244 ~i 245 (318)
T 3sov_A 244 EI 245 (318)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.059 Score=65.87 Aligned_cols=226 Identities=8% Similarity=-0.046 Sum_probs=139.5
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccC----eeeEEeccCCCceeEEEecC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECG----RIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg----~~i~~l~~H~~~Vt~l~~sp 674 (917)
....|+..++........+ .....+..+++.+.+..|. +-...+.|+.+++... .....+.........|++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 3456777777655433322 2334567889998555544 4455678988888753 22333443445677899987
Q ss_pred CCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEe
Q psy3053 675 KRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQL 751 (917)
Q Consensus 675 d~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l 751 (917)
.+..|+ +-+..+.|.+.++.... ..............|+++|.+..|..+.. .+.|...++........+
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCe-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 665554 54567899999987541 11111223345889999998666666553 267999998754443333
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
. ..-.....|++++.+..|+.+. ..+.|...++........... -.....+++..+..+++-...+.|...+..+
T Consensus 554 ~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 554 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred e-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence 3 3446788999998776666664 456899999865433332222 2345677777774555556678898888877
Q ss_pred CEEEEEE
Q psy3053 828 VQLLKQV 834 (917)
Q Consensus 828 ~~~i~~l 834 (917)
++.+..+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 7554444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.11 Score=61.86 Aligned_cols=222 Identities=10% Similarity=-0.063 Sum_probs=140.4
Q ss_pred cCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
..+.|+..++++......+.. .-.....++|++.+..|..+ ..++.|+.++++.......+.........+++.+.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 567788888876544333322 22356789999876665554 4578899998876544444433334577889887655
Q ss_pred EE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCC
Q psy3053 678 RL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 678 ~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~ 754 (917)
.| ++-...+.|.+.++.... .... ....-.....++++|....|..+.. .+.|...++..........
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~------~~~l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-- 163 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQH------RQVL-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-- 163 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTT------CEEE-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--
T ss_pred EEEEEECCCCEEEEEecCCCc------EEEE-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--
Confidence 55 444456789999986541 1111 1123345789999996666665553 5678888887554333332
Q ss_pred CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
.......+++++++..|..+. ..+.|...|+.................+++..+..+++-...+.|...|..+++.
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCc
Confidence 346788999999877766664 4678999998654332222233446678888764444555578999999876653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.028 Score=61.98 Aligned_cols=226 Identities=12% Similarity=0.021 Sum_probs=118.4
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEEC-C-----C
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTE-A-----G 735 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~-d-----G 735 (917)
.....++|.|+|+.++ +..+|.|.+++ .+.. ..................++++|+ +..|.++.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc--cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3567999999998554 46779999998 2210 000000011122456889999998 555544433 2 6
Q ss_pred eEEEEECCCCe-----ee-EEec--CCCCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC------
Q psy3053 736 ELIIWSLENHL-----MT-QQLS--DDINASVNGVLFSEDGCRVLSCGNN-------------CMLNVYDLTTG------ 788 (917)
Q Consensus 736 ~I~iwDl~~~~-----~~-~~l~--~~h~~~V~~v~fspdg~~L~s~s~D-------------g~I~iwDl~tg------ 788 (917)
.|..++...+. .+ ..+. .........++|.|||.+.++.+.. |.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 78888877532 11 1122 1112234689999999766664321 45555554320
Q ss_pred --------eEEEEeecCCceEEEEEeC-CCEEEEEeCCC-e--------EEEEECCC----------------CEEEEEE
Q psy3053 789 --------MQVCNKVFEEKLLCLSWAG-EEKVILGGALG-M--------VYLVDLIQ----------------VQLLKQV 834 (917)
Q Consensus 789 --------~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG-~--------I~vwdl~~----------------~~~i~~l 834 (917)
..+.... ......+++++ ++.+.++.... . |.+..... ..++..+
T Consensus 186 f~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 186 FLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred ccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 0111111 12245677887 56666554322 1 32222110 0112222
Q ss_pred ecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCe----E--EEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 835 RAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGR----I--VTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 835 ~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~----~--l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
..| .....+. ++|..+++....+.|...+++... . ...+......+.++++.|||.+.++..
T Consensus 265 ~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCC-CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 112 2233443 466666655566777777765332 1 122222246789999999998777754
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.13 Score=56.38 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=60.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCcee--eeee---ccccceEEEEEeCC---CCEEEEEec-c-----cEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQE--RSAV---LSSMTLSSLCILPD---NCTMLVGCW-D-----SCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~~~---~~~~~V~sl~~spd---~~~Lasgs~-D-----g~I~ 647 (917)
.-.+++|.|+|++ +.+..+|.|.+++ +++.. ..+. ........++++|+ +..|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4568999999984 4556779999888 44321 1111 12345788999998 555554443 2 6788
Q ss_pred EEEeccCe-----e-eEEec---cCCCceeEEEecCCCCEEEEEE
Q psy3053 648 IYDVECGR-----I-VTELA---GHEDAISCVAWDEKRKRLISGS 683 (917)
Q Consensus 648 Iwdl~tg~-----~-i~~l~---~H~~~Vt~l~~spd~~~L~Sgs 683 (917)
.++...+. . ...+. +.......++|.|+|.+.++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88877542 1 12233 1112346899999997666643
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.23 E-value=0.94 Score=57.68 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=176.2
Q ss_pred CcEEEEEecCCceEEEecc--CCceee--eeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCce
Q psy3053 592 GISVASVGRDAMLKIHSLK--TGRQER--SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 667 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~--t~~~~~--~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~V 667 (917)
..+|..|-.||.+.-+.++ +|.... .......++.-..+...+..-+.+..+....++.-+ ++.... .-.-..+
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v 694 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV 694 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence 3578888899988665553 444321 122233455444444444433333334444444433 332211 1111233
Q ss_pred e-EEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC----------
Q psy3053 668 S-CVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---------- 734 (917)
Q Consensus 668 t-~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---------- 734 (917)
. ...|+.. ..-++..+ ++.++|..+.... ............+..++++|+.+.+++++.+
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~------~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ------KLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS------SEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEecccC------CeeEEEEeCCCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 3 3345332 23444333 5568888875431 1222233445678888888877765544311
Q ss_pred ---------------------------------------CeEEEEECCCCeeeEEecCCCCCCeEEEEEe---cC-CCEE
Q psy3053 735 ---------------------------------------GELIIWSLENHLMTQQLSDDINASVNGVLFS---ED-GCRV 771 (917)
Q Consensus 735 ---------------------------------------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fs---pd-g~~L 771 (917)
+.|++.|..+.+.+..+.-.....+.+++.- .+ ..++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 2466777777776665553344455555532 22 4678
Q ss_pred EEEe----------CCCeEEEEECCCCe--EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE-EEecCC
Q psy3053 772 LSCG----------NNCMLNVYDLTTGM--QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK-QVRAHK 838 (917)
Q Consensus 772 ~s~s----------~Dg~I~iwDl~tg~--~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~-~l~~h~ 838 (917)
++|+ ..|.|.++++..++ .+......+.+++++--.+ ++++|- ...|++|++...+.++ ......
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~ 925 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYN 925 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccc
Confidence 7776 35789999986543 3455667888999887655 666654 5789999998665433 111121
Q ss_pred C-ceEEEeecCCEEEEEeCCCeEEEEE--CcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 839 D-AVLSLHFDNCTMLVGCWDSCVVIYD--VECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 839 ~-~V~sis~dg~~Lasgs~DG~I~Iwd--l~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
. .+..+...++++++|..-.+|.++. ...++....- ..+...++++.+-.+ ..++.+..+|.+.+...+.
T Consensus 926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 926 NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 1 2345666789999998877777654 4444443322 234567888888655 4778899999999987754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=79.30 Aligned_cols=226 Identities=8% Similarity=-0.053 Sum_probs=133.6
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEecc----CeeeEEeccCCCceeEEEecCC
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVEC----GRIVTELAGHEDAISCVAWDEK 675 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~t----g~~i~~l~~H~~~Vt~l~~spd 675 (917)
.+.|+..++.+......+.. ...+..++|.+.+..|..+. ..+.|+.+++.+ ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677777766554433332 23456788998776666554 467899998875 2222222222234567888754
Q ss_pred -CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec-cCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEe
Q psy3053 676 -RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL-DLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQL 751 (917)
Q Consensus 676 -~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l 751 (917)
++++++-...+.|.+.++.... ..... ........++++|.+..|..+.. .+.|...++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~--------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVK--------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCC--------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCc--------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 4444554567889999876541 11111 12234678899987655554432 267888777643322222
Q ss_pred cCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
. ..-.....|+++|++..|+.+ +..+.|..+++........... ......+++..+..+++....+.|..++..+
T Consensus 536 ~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp C-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred e-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 2 223456789999976555544 4567899999864332222211 1234566777775666666778999999988
Q ss_pred CEEEEEEec
Q psy3053 828 VQLLKQVRA 836 (917)
Q Consensus 828 ~~~i~~l~~ 836 (917)
++.+..+..
T Consensus 615 G~~~~~i~~ 623 (699)
T 1n7d_A 615 GSDVNLLAE 623 (699)
T ss_dssp EEEEECCCT
T ss_pred CCceEEeec
Confidence 888777754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.07 Score=61.30 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=136.3
Q ss_pred ceeEEEecC-CCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeecc----CCCceEEEEE-------eCCCCEEEEEE
Q psy3053 666 AISCVAWDE-KRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLD----LDNRIKCLAI-------SKDNNQLAVGT 732 (917)
Q Consensus 666 ~Vt~l~~sp-d~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~----h~~~V~~l~~-------spdg~~Lasgs 732 (917)
....|+++| ++..|+.+.. .+.|++.|...+ .+..... .......++| +++|+.++++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT--------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC--------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence 467899998 3455555544 467888888765 2222111 2235889999 99999676666
Q ss_pred CCC-------eEEEEECCC-Ceee-----EEecCCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECC-------CCeE-
Q psy3053 733 EAG-------ELIIWSLEN-HLMT-----QQLSDDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLT-------TGMQ- 790 (917)
Q Consensus 733 ~dG-------~I~iwDl~~-~~~~-----~~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~-------tg~~- 790 (917)
..+ .|.+++... +... ..+. . ......++++|+ +.++++...++.|..+|+. ++..
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 554 266666443 2221 1221 1 123457788995 5555556677889999987 5543
Q ss_pred -------------EEEeecCCceEEEEEeCCCE-E-EEEeCCCeEEEEEC--CCCEEE--EEEecC---CC---------
Q psy3053 791 -------------VCNKVFEEKLLCLSWAGEEK-V-ILGGALGMVYLVDL--IQVQLL--KQVRAH---KD--------- 839 (917)
Q Consensus 791 -------------i~~~~~~~~i~~l~~s~~~~-l-v~gs~dG~I~vwdl--~~~~~i--~~l~~h---~~--------- 839 (917)
+...........+++++++. + ++-+....|+.++. ..+... ..+.+. .+
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a 369 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEA 369 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGC
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccc
Confidence 22222234467899998875 3 44456678988654 333321 222221 10
Q ss_pred ----c--eEEEe-------ecCCEEEEEeCCCeEEEEECcCCeEEEEecCC------------------------CCCEE
Q psy3053 840 ----A--VLSLH-------FDNCTMLVGCWDSCVVIYDVECGRIVTELAGH------------------------EDAIS 882 (917)
Q Consensus 840 ----~--V~sis-------~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h------------------------~~~V~ 882 (917)
+ ..++. .++.+.++-...+.|+.++ .+|. +.++.+. -..-.
T Consensus 370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~ 447 (496)
T 3kya_A 370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVS 447 (496)
T ss_dssp BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEE
T ss_pred ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCc
Confidence 1 12222 3455555556678888888 4564 3333221 12367
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEecCcc
Q psy3053 883 CVAWDEK-RKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 883 slafSpd-g~~LaSgs~DG~V~IWdl~~~ 910 (917)
.|+++++ |.+.++=.....|+.+++++.
T Consensus 448 gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 448 GLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 8999997 666565567788999988754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.25 Score=60.39 Aligned_cols=227 Identities=7% Similarity=-0.090 Sum_probs=136.6
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
...|+..++........+. ....+.++++++.+..|+ +-...+.|..+++...... ................|++
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEE
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cceeEEEecCCCCcceeee
Confidence 4557777777655444443 345678999998555555 4445678888888653100 0011111223345678999
Q ss_pred eCCCCEEE-EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEECCCCeEEEEeec-C
Q psy3053 722 SKDNNQLA-VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-N-CMLNVYDLTTGMQVCNKVF-E 797 (917)
Q Consensus 722 spdg~~La-sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-D-g~I~iwDl~tg~~i~~~~~-~ 797 (917)
.+.++.|. +-...+.|.+.++........+. ........|++.|.+..|+.+.. . +.|...++........... -
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 98775554 44567899999997654333333 34456889999997666666543 2 6788888865443333322 2
Q ss_pred CceEEEEEeC-CCEEEEEe-CCCeEEEEECCCCEEEEEEec--CCCceEEEeecCCEEEEEe-CCCeEEEEECcCCeEEE
Q psy3053 798 EKLLCLSWAG-EEKVILGG-ALGMVYLVDLIQVQLLKQVRA--HKDAVLSLHFDNCTMLVGC-WDSCVVIYDVECGRIVT 872 (917)
Q Consensus 798 ~~i~~l~~s~-~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~--h~~~V~sis~dg~~Lasgs-~DG~I~Iwdl~tg~~l~ 872 (917)
.....+++++ .+.|+.+. ..+.|...++........+.. .-....+|+..+..|+.+. ..+.|...+..+|+.+.
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceE
Confidence 4678899883 45665554 457899999865443333332 2234556666666655554 55788888877776554
Q ss_pred Ee
Q psy3053 873 EL 874 (917)
Q Consensus 873 ~l 874 (917)
.+
T Consensus 638 ~l 639 (791)
T 3m0c_C 638 LL 639 (791)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.033 Score=60.27 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=105.4
Q ss_pred eEEEEEeCCCcEEEEEe-cCCceEEEeccCCceeee-eec----c--ccceEEEEE---eCCCCEEEEEec---------
Q psy3053 583 ITAVAICGEGISVASVG-RDAMLKIHSLKTGRQERS-AVL----S--SMTLSSLCI---LPDNCTMLVGCW--------- 642 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~-~~~----~--~~~V~sl~~---spd~~~Lasgs~--------- 642 (917)
-.+++|.+....+..++ ..|+|..|+...+..... +.. . ...+..+.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678887555555555 789999999875543322 211 0 113578899 588777776432
Q ss_pred ----ccEEEEEEec---cCeeeEEec--cC-----------CCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCcc
Q psy3053 643 ----DSCVVIYDVE---CGRIVTELA--GH-----------EDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMK 701 (917)
Q Consensus 643 ----Dg~I~Iwdl~---tg~~i~~l~--~H-----------~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~ 701 (917)
++.|..+|+. +++.+.... +. ......++..++|+.-++++.- +.|...+..... ..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~--~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT--VS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC--EE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE--Ee
Confidence 6789999999 787665443 11 1247899999999999999888 877666654321 00
Q ss_pred CCcceeee--ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q psy3053 702 PSKSLVSQ--LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 702 ~~~~~~~~--~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~ 745 (917)
.. .... .......+.|+++|+|+.|++....|.+..+|+.+.
T Consensus 173 ~~--~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TF--AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EE--EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred ee--eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 00 0000 111233679999999999988877999999998853
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.051 Score=57.81 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=121.5
Q ss_pred CCCEEEEEe-cc-----cEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCC
Q psy3053 633 DNCTMLVGC-WD-----SCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSH 699 (917)
Q Consensus 633 d~~~Lasgs-~D-----g~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~ 699 (917)
++.+++.|+ .+ ..+.+||..+++-... +........++. .++..++.|+.+ ..+.+||..+....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 3688888877653321 111111112222 255677777755 46888998765200
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
................++. .++.+++.|+.+ ..+.+||+.+.+-...-.......-.++ ..-+++.++.|
T Consensus 92 --~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~G 166 (301)
T 2vpj_A 92 --VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL-VVASGVIYCLG 166 (301)
T ss_dssp --CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE-EEETTEEEEEC
T ss_pred --eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE-EEECCEEEEEC
Confidence 0011111111111112222 257777777654 3588999887654332211111111122 22367777777
Q ss_pred eCC-----CeEEEEECCCCeEEEEeecCCc--eEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEE--EecCCCc
Q psy3053 775 GNN-----CMLNVYDLTTGMQVCNKVFEEK--LLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQ--VRAHKDA 840 (917)
Q Consensus 775 s~D-----g~I~iwDl~tg~~i~~~~~~~~--i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~--l~~h~~~ 840 (917)
+.+ ..+.+||+.+++-......... -.+++..++..++.|+.+ ..+.+||+.+.+-... +......
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 654 4588999988765443222221 223333445456666654 5789999988764432 2222222
Q ss_pred eEEEeecCCEEEEEeCC-----CeEEEEECcCCeE
Q psy3053 841 VLSLHFDNCTMLVGCWD-----SCVVIYDVECGRI 870 (917)
Q Consensus 841 V~sis~dg~~Lasgs~D-----G~I~Iwdl~tg~~ 870 (917)
..++..+++.++.|+.+ ..+.+||.++.+.
T Consensus 247 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 247 VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred eeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 33445578888888765 3678888887664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.19 Score=57.61 Aligned_cols=161 Identities=9% Similarity=-0.041 Sum_probs=94.3
Q ss_pred ceEEEEEeC-CCcEEEEEec-CCceEEEeccCCceeeeeecc---ccceEEEEE-------eCCCCEEEEEeccc-----
Q psy3053 582 AITAVAICG-EGISVASVGR-DAMLKIHSLKTGRQERSAVLS---SMTLSSLCI-------LPDNCTMLVGCWDS----- 644 (917)
Q Consensus 582 ~Vtsv~fSp-dg~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~---~~~V~sl~~-------spd~~~Lasgs~Dg----- 644 (917)
.-..|+|+| ++..|+.+.. .+.|++.|.+++......... ......++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356889998 3544555544 467888888776655433322 224688999 99999777766543
Q ss_pred --EEEEEEecc-Ceee-----EEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCC-------CCCC--CccCC---
Q psy3053 645 --CVVIYDVEC-GRIV-----TELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTG-------ASWS--HMKPS--- 703 (917)
Q Consensus 645 --~I~Iwdl~t-g~~i-----~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~-------~~~~--~~~~~--- 703 (917)
.|.+.+... |... ..+... .....++.+|+ +.++++-..++.|..+|+. ++.. ...+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 355665443 2221 222211 23457788995 4555566677889999986 3321 00000
Q ss_pred -cceeeeccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECC
Q psy3053 704 -KSLVSQLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLE 743 (917)
Q Consensus 704 -~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~ 743 (917)
.......+.......++++|+|+.|..+ +..+.|+.++..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0011122334456899999999965544 456788886543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.14 Score=56.39 Aligned_cols=227 Identities=9% Similarity=0.005 Sum_probs=122.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEEC----C---
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTE----A--- 734 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~----d--- 734 (917)
.....++|.|+++ |+.+..+|.|.+++. .+. ..................++++|+ +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~---~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK---KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc---eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4568999999987 555567799999973 221 000000001122356889999997 445544433 3
Q ss_pred -CeEEEEECCCC-------eee-EEecCCCCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC----
Q psy3053 735 -GELIIWSLENH-------LMT-QQLSDDINASVNGVLFSEDGCRVLSCGNN-------------CMLNVYDLTTG---- 788 (917)
Q Consensus 735 -G~I~iwDl~~~-------~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~D-------------g~I~iwDl~tg---- 788 (917)
+.|..++.... +.+ ..+..........++|.|||.+.++.+.. |.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56888887654 111 11221212234679999999876664431 44555554321
Q ss_pred -----eEEEEeecCCceEEEEEeC-CCEEEEEeCCC----eEEEEECCC--------C--------EEEEEEecCCCceE
Q psy3053 789 -----MQVCNKVFEEKLLCLSWAG-EEKVILGGALG----MVYLVDLIQ--------V--------QLLKQVRAHKDAVL 842 (917)
Q Consensus 789 -----~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG----~I~vwdl~~--------~--------~~i~~l~~h~~~V~ 842 (917)
..+....+ .....+++++ .+.+.++.... .|.+..... + .++..+........
T Consensus 184 npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 184 NPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 01211111 2245678887 66666655432 233332110 0 12222211122344
Q ss_pred EEe---------ecCCEEEEEeCCCeEEEEECcCC-eEE--EEe-cCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 843 SLH---------FDNCTMLVGCWDSCVVIYDVECG-RIV--TEL-AGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 843 sis---------~dg~~Lasgs~DG~I~Iwdl~tg-~~l--~~l-~~h~~~V~slafSpdg~~LaSgs 897 (917)
.+. ++|.++++....+.|...++... +.. ..+ .+....+.++++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 443 35666666666778888888743 332 233 23346789999999998777664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.049 Score=57.95 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=110.8
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc-----cEEEEEEeccCe---eeE--EeccCCCceeEEE
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD-----SCVVIYDVECGR---IVT--ELAGHEDAISCVA 671 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D-----g~I~Iwdl~tg~---~i~--~l~~H~~~Vt~l~ 671 (917)
..+.+||..+++-..............+...++.+++.|+.+ ..+.+||..+++ -.. .+........++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 357788877654322111111111122223467788888765 468899988765 222 2221111122222
Q ss_pred ecCCCCEEEEEECC-----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEE
Q psy3053 672 WDEKRKRLISGSWD-----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWS 741 (917)
Q Consensus 672 ~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwD 741 (917)
. ++..++.|+.+ ..+.++|..+.. ...............++. -++++++.|+.+ ..+.+||
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d 181 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQ-----WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYD 181 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTE-----EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCe-----EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEe
Confidence 2 56677777654 357888876652 011111111111112222 267777887754 4588999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILG 814 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~g 814 (917)
+.+.+-...-.......-.++ ..-+++.++.|+.+ ..+.+||+.+.+-........ .-.+++..++..++.|
T Consensus 182 ~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 182 PHTGHWTNVTPMATKRSGAGV-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp TTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCCCcEEeCCCCCcccccceE-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence 987754433221111111122 22366777777654 468999998876544322221 1222333344456666
Q ss_pred eCC-----CeEEEEECCCCE
Q psy3053 815 GAL-----GMVYLVDLIQVQ 829 (917)
Q Consensus 815 s~d-----G~I~vwdl~~~~ 829 (917)
+.+ ..+.+||..+.+
T Consensus 261 G~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 261 GYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBEEEEEEEETTTTE
T ss_pred CcCCCcccccEEEEcCCCCe
Confidence 654 467888887664
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.099 Score=56.54 Aligned_cols=162 Identities=9% Similarity=0.109 Sum_probs=106.8
Q ss_pred eEEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEE-ecc----CC--CceeEEEe---cCCCCEEEEEE----------
Q psy3053 625 LSSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTE-LAG----HE--DAISCVAW---DEKRKRLISGS---------- 683 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~-l~~----H~--~~Vt~l~~---spd~~~L~Sgs---------- 683 (917)
-.+++|.+....+..++ ..++|..|+...+..... +.+ .. ..+..+.| .|++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 35678988666666666 699999999986644333 322 11 13679999 68877776543
Q ss_pred ---CCCeEEEEeCC---CCCCCccCCcceeeec-c-------CCCceEEEEEeCCCCEEEEEECC-CeEEEEECCCCeee
Q psy3053 684 ---WDCTVRVWNTG---ASWSHMKPSKSLVSQL-D-------LDNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHLMT 748 (917)
Q Consensus 684 ---~DgtI~vWdl~---~~~~~~~~~~~~~~~~-~-------h~~~V~~l~~spdg~~Lasgs~d-G~I~iwDl~~~~~~ 748 (917)
.+..|..+|+. ++...... .+.... + .......++..++|+..++++.. +.|...+.......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~--dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSV--NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEE--ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEe--cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26789999988 44211100 000000 0 12347899999999999999988 88888887654322
Q ss_pred EE-ecC---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 749 QQ-LSD---DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 749 ~~-l~~---~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
.- +.. ......+.++++|+|..|++....|.+..+|+.+.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 11 111 12234679999999999999888999999998753
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.085 Score=56.13 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=75.7
Q ss_pred CCCEEEEEecc-----cEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCCc
Q psy3053 633 DNCTMLVGCWD-----SCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWSHM 700 (917)
Q Consensus 633 d~~~Lasgs~D-----g~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~~~ 700 (917)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++..++.|+.++ .+.+||..+..-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~- 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF- 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe-
Confidence 67788888765 3588899887653322 2111111222222 567777777653 5778887665210
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
............ +++. -++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++ .-+++.++.
T Consensus 138 ----~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~ 210 (302)
T 2xn4_A 138 ----HVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAV 210 (302)
T ss_dssp ----EECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEE
T ss_pred ----ecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEE
Confidence 000000111111 2222 256777776543 35889999877543322111111111222 225667777
Q ss_pred EeCC-----CeEEEEECCCCeEE
Q psy3053 774 CGNN-----CMLNVYDLTTGMQV 791 (917)
Q Consensus 774 ~s~D-----g~I~iwDl~tg~~i 791 (917)
|+.+ ..+.+||..+++-.
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCCcccceEEEEeCCCCCEe
Confidence 7654 35778887776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.33 Score=53.20 Aligned_cols=237 Identities=12% Similarity=0.096 Sum_probs=125.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee-eeccCCCceEEEEEeCC---CCEEEEE-EC------
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV-SQLDLDNRIKCLAISKD---NNQLAVG-TE------ 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spd---g~~Lasg-s~------ 733 (917)
...+.|+|.|+|+.|+.+...|.|.+++....... ...... ...........++++|+ +..|.++ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA--PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC--CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee--EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34689999999983445567899999985322110 000000 01122345789999996 4444443 22
Q ss_pred -CCeEEEEECCCC----eeeEEe----cC--CCCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC-
Q psy3053 734 -AGELIIWSLENH----LMTQQL----SD--DINASVNGVLFSEDGCRVLSCGNN-------------CMLNVYDLTTG- 788 (917)
Q Consensus 734 -dG~I~iwDl~~~----~~~~~l----~~--~h~~~V~~v~fspdg~~L~s~s~D-------------g~I~iwDl~tg- 788 (917)
...|..+++... .....+ .. ........++|.|||.+.++.+.. |.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666766533 111111 10 111224579999999665555432 45666665422
Q ss_pred -------------eEEEEeecCCceEEEEEeC-CCEEEEEeCCC----eEEEEEC--------CC---------------
Q psy3053 789 -------------MQVCNKVFEEKLLCLSWAG-EEKVILGGALG----MVYLVDL--------IQ--------------- 827 (917)
Q Consensus 789 -------------~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG----~I~vwdl--------~~--------------- 827 (917)
..+... .......++|++ .+.+.++.... .|.+... ..
T Consensus 176 p~~npf~~~~~~~~~i~a~-G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSY-GIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEE-CCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEE-cCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 011111 112367788998 67777765432 2222110 00
Q ss_pred ------CEEEEEEecCCCceEEEee---------cCCEEEEEeCCCeEEEEECcCCeEEEE--e-cCCCCCEEEEEEcCC
Q psy3053 828 ------VQLLKQVRAHKDAVLSLHF---------DNCTMLVGCWDSCVVIYDVECGRIVTE--L-AGHEDAISCVAWDEK 889 (917)
Q Consensus 828 ------~~~i~~l~~h~~~V~sis~---------dg~~Lasgs~DG~I~Iwdl~tg~~l~~--l-~~h~~~V~slafSpd 889 (917)
..++..+..| .....+.+ +|.++++....+.|...+++.++.... + ......+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0011122222 23444422 466777766778888888876654432 2 222357999999999
Q ss_pred CCEEEEEe-CCCcEEEEec
Q psy3053 890 RKRLISGN-LVGAPKLYAT 907 (917)
Q Consensus 890 g~~LaSgs-~DG~V~IWdl 907 (917)
|.+.++.. .+| +||.+
T Consensus 334 G~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 334 GYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp SCEEEEECSTTE--EEEEE
T ss_pred CcEEEEEeCCCC--EEEEE
Confidence 98666543 344 45554
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.096 Score=55.73 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=103.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeEEEE
Q psy3053 724 DNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTGMQVCN 793 (917)
Q Consensus 724 dg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg~~i~~ 793 (917)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++ .-+++.++.|+.++ .+.+||+.+.+-...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 66777777754 35889998877543322211111111222 23677777777553 578899888765443
Q ss_pred eecCCc--eEEEEEeCCCEEEEEeC-------CCeEEEEECCCCEEEEE--EecCCCceEEEeecCCEEEEEeCC-----
Q psy3053 794 KVFEEK--LLCLSWAGEEKVILGGA-------LGMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTMLVGCWD----- 857 (917)
Q Consensus 794 ~~~~~~--i~~l~~s~~~~lv~gs~-------dG~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~Lasgs~D----- 857 (917)
.....+ -.+++...+..++.|+. ...+.+||..+.+-... +........++..++++++.|+.+
T Consensus 140 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 219 (302)
T 2xn4_A 140 APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVR 219 (302)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBC
T ss_pred CCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCccc
Confidence 222221 22333334435556553 24588999988764432 222222233445678888888765
Q ss_pred CeEEEEECcCCeEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCcce
Q psy3053 858 SCVVIYDVECGRIVTELAGHE--DAISCVAWDEKRKRLISGNLVG-----APKLYATEFYL 911 (917)
Q Consensus 858 G~I~Iwdl~tg~~l~~l~~h~--~~V~slafSpdg~~LaSgs~DG-----~V~IWdl~~~l 911 (917)
..+.+||..+.+....-.... ..-..+. .+++.++.||.++ .+.+||.+...
T Consensus 220 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 220 KSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 368899998876543321111 1112222 2677778887654 48888887543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0084 Score=72.59 Aligned_cols=207 Identities=9% Similarity=-0.064 Sum_probs=120.2
Q ss_pred cceEEEEEeCCCcEEEEEe-cCCceEEEeccC----CceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccC
Q psy3053 581 EAITAVAICGEGISVASVG-RDAMLKIHSLKT----GRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t----~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
..+.+++|++.+..|+.+. ..+.|..+++.+ ......+.........+++.+. ++++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466889998776666554 457888888875 2222222111223456777754 444455456788999998765
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEEC-C-CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE-
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSW-D-CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG- 731 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-D-gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg- 731 (917)
.....+.........++++|.+..|+.+.. . +.|.+.++..... ... ....-.....|++++++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------~~l-~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSL-VTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------CEE-SCSSCSSCCCEEECTTTCCEEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------eEE-EeCCCCCccEEEEeccCCEEEEEe
Confidence 444333333345678899986665555443 2 6777776644310 111 11122346789999876555444
Q ss_pred ECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 732 TEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+..+.|..+++........+.. ........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4567899999875433322221 11233445566544 455555567889999988887766554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.16 Score=54.11 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=110.9
Q ss_pred EEEEEec--CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc----cEEEEEEeccCeeeEE--eccCCC
Q psy3053 594 SVASVGR--DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----SCVVIYDVECGRIVTE--LAGHED 665 (917)
Q Consensus 594 ~Lasgs~--Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g~I~Iwdl~tg~~i~~--l~~H~~ 665 (917)
.++.|+. ...+.+||..+++-...-..........+..-++.+++.|+.+ ..+.+||..+++-... +.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4455554 3567788877654322111111111112222367788888765 6788999887754332 221111
Q ss_pred ceeEEEecCCCCEEEEEECC------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC------
Q psy3053 666 AISCVAWDEKRKRLISGSWD------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE------ 733 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------ 733 (917)
...++.+ ++..++.|+.+ ..+.+||..+..-. .............++. -++.+++.|+.
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH-----TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE-----EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTT
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE-----eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCc
Confidence 1122222 56777777765 45888888765200 0000000111111222 25677777753
Q ss_pred ---CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC--ceEEE
Q psy3053 734 ---AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFEE--KLLCL 803 (917)
Q Consensus 734 ---dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~~--~i~~l 803 (917)
-..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+++-......+. .-.++
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 3458899998875433322111111112222 266677766643 358889988775443322221 11222
Q ss_pred EEeCCCEEEEEeCC-----CeEEEEECCCCE
Q psy3053 804 SWAGEEKVILGGAL-----GMVYLVDLIQVQ 829 (917)
Q Consensus 804 ~~s~~~~lv~gs~d-----G~I~vwdl~~~~ 829 (917)
+..++..++.|+.+ ..+.+||..+.+
T Consensus 244 ~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 244 AAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 23344355666643 456677766654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=1 Score=50.34 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=136.9
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeEEeccCC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHE 664 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~~H~ 664 (917)
.-.+|..+.+|--. ..++.|+|+++...+++...... |.-=.|-.+. .|+..+ +..|+-|+++. ..+++.+..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 34567766666554 78999999999988888776553 4444454443 333333 56799999974 34555665553
Q ss_pred ----CceeEEEecCCCCEEEEEE-------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEE
Q psy3053 665 ----DAISCVAWDEKRKRLISGS-------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAV 730 (917)
Q Consensus 665 ----~~Vt~l~~spd~~~L~Sgs-------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Las 730 (917)
..|..-..+++.++++..+ -.|.+.+|..+.. ......+|...-..+.+..+ ..+++.
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------VSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--------CEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--------ccchheeeeeeeEEEecCCCCCCceEEEE
Confidence 4566777788888876443 2478889998765 22233344333322222111 123444
Q ss_pred EEC---CCeEEEEECCCC--------eeeEEec---CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 731 GTE---AGELIIWSLENH--------LMTQQLS---DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 731 gs~---dG~I~iwDl~~~--------~~~~~l~---~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
+.. .+.+++.++... +....+. ....+-..++..|+.-..+...+.-|.+++||+.++.++.....
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 433 378999888543 1111111 12244566788899888999999999999999999998876554
Q ss_pred CC-ceEEEEEe-CCCEEEEEeCCCeEEEEEC
Q psy3053 797 EE-KLLCLSWA-GEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 797 ~~-~i~~l~~s-~~~~lv~gs~dG~I~vwdl 825 (917)
.. .+...+.+ ..+-+++....|.|.-..+
T Consensus 299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred cCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 33 33333332 2234444445555544443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.22 Score=53.01 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=121.2
Q ss_pred CCEEEEEec--ccEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcc
Q psy3053 634 NCTMLVGCW--DSCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 634 ~~~Lasgs~--Dg~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~ 705 (917)
+.+++.|+. ...+.+||..+++-... +........++.. ++..++.|+.+ ..+.++|..+..- ..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W-----~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSW-----YS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEE-----EE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeE-----EE
Confidence 345556654 35688899887654321 2111111222222 55677777755 5788888876520 01
Q ss_pred eeeeccCCCceEEEEEeCCCCEEEEEECC------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---
Q psy3053 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEA------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN--- 776 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~spdg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--- 776 (917)
............++. -++.+++.|+.+ ..+.+||..+.+-...-.......-.+++ .-+++.++.|+.
T Consensus 85 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 85 KLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV-EANGLIYVCGGSLGN 161 (306)
T ss_dssp EECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEESC
T ss_pred CCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE-EECCEEEEECCCCCC
Confidence 111111111112222 267777887765 45889999887543332211111111222 236666666653
Q ss_pred ------CCeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEE--EecCCCce
Q psy3053 777 ------NCMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQ--VRAHKDAV 841 (917)
Q Consensus 777 ------Dg~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~--l~~h~~~V 841 (917)
-..+.+||..+.+-........ .-.++...++..++.|+.+ ..+.+||+.+.+-... +.......
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 3458899998876544322222 1223333444456666543 4689999988754322 22222223
Q ss_pred EEEeecCCEEEEEeCC-----CeEEEEECcCCeEE
Q psy3053 842 LSLHFDNCTMLVGCWD-----SCVVIYDVECGRIV 871 (917)
Q Consensus 842 ~sis~dg~~Lasgs~D-----G~I~Iwdl~tg~~l 871 (917)
.++..++++++.|+.+ ..+.+||..+.+..
T Consensus 242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3445578888888854 56889999877643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=1.1 Score=49.09 Aligned_cols=232 Identities=12% Similarity=0.052 Sum_probs=122.2
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCc-eeeeee---ccccceEEEEEeCC---CCEEEEEec----c----cE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGR-QERSAV---LSSMTLSSLCILPD---NCTMLVGCW----D----SC 645 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~~~---~~~~~V~sl~~spd---~~~Lasgs~----D----g~ 645 (917)
..-.+++|.|+|+ |+.+..+|.|.+++ .+++ .+..+. ........++++|+ +..|.++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3457899999997 55556779999887 3444 111111 12345788999997 445544433 3 67
Q ss_pred EEEEEeccC--e-----ee-EEecc-CCCceeEEEecCCCCEEEEEEC-------------CCeEEEEeCCCCCCCccCC
Q psy3053 646 VVIYDVECG--R-----IV-TELAG-HEDAISCVAWDEKRKRLISGSW-------------DCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 646 I~Iwdl~tg--~-----~i-~~l~~-H~~~Vt~l~~spd~~~L~Sgs~-------------DgtI~vWdl~~~~~~~~~~ 703 (917)
|..|+...+ . .+ ..+.. .......++|.|+|.+.++.+. .|.|.-.+.........+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777877654 1 11 11221 1113467999999987776432 1445555543220000000
Q ss_pred -cceeeeccCCCceEEEEEeC-CCCEEEEEECCC---eEEEEECCC--------C--------eeeEEecCCCCCCeEEE
Q psy3053 704 -KSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAG---ELIIWSLEN--------H--------LMTQQLSDDINASVNGV 762 (917)
Q Consensus 704 -~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG---~I~iwDl~~--------~--------~~~~~l~~~h~~~V~~v 762 (917)
.......++. ....++|+| ++.+.++-...+ .|.+..... + .++..+. ........+
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SETWAPSGA 264 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCCEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCCcCCcce
Confidence 0111122332 356899999 566544432211 243332111 0 1122221 123457788
Q ss_pred EEe-------cCCCEEEEEeCCCeEEEEECCCC-eEEE--Eeec--CCceEEEEEeCCCEEEEEeC
Q psy3053 763 LFS-------EDGCRVLSCGNNCMLNVYDLTTG-MQVC--NKVF--EEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 763 ~fs-------pdg~~L~s~s~Dg~I~iwDl~tg-~~i~--~~~~--~~~i~~l~~s~~~~lv~gs~ 816 (917)
+|. .+|.++++....+.|...++... .... .+.. ...+..+++.+++.+.+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 883 46767766666778888887643 3221 1111 34677888887776655543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.15 Score=54.45 Aligned_cols=229 Identities=15% Similarity=0.055 Sum_probs=109.1
Q ss_pred CCcEEEEEec----CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec----c-----cEEEEEEeccCeee
Q psy3053 591 EGISVASVGR----DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW----D-----SCVVIYDVECGRIV 657 (917)
Q Consensus 591 dg~~Lasgs~----Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~----D-----g~I~Iwdl~tg~~i 657 (917)
++..++.|+. -..+.++|..+++-...-..........+..-++.+++.|+. + +.+.+||..+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 3445555553 235777887665432211111111111112236777777776 2 35788888776533
Q ss_pred EE--eccCCCceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 658 TE--LAGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 658 ~~--l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
.. +........++.+ ++..++.|+.+ ..+.+||..+..-.... . .........++.+ ++.+++.
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~---~p~~r~~~~~~~~--~~~iyv~ 174 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--P---MLTRRIGVGVAVL--NRLLYAV 174 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECC--C---CSSCCBSCEEEEE--TTEEEEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECC--C---CCccccceEEEEE--CCEEEEE
Confidence 22 1111111222222 55667776643 35788888765210000 0 0011111122222 6677777
Q ss_pred EECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC--
Q psy3053 731 GTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFEE-- 798 (917)
Q Consensus 731 gs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~~-- 798 (917)
|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-........
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 7654 458899988765432211111111112222 266677777654 468899988775543322221
Q ss_pred ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCE
Q psy3053 799 KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQ 829 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~ 829 (917)
.-.+++..++..++.|+.+ ..+.+||+.+.+
T Consensus 254 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1122333344345555533 345666665544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.58 E-value=1.2 Score=48.80 Aligned_cols=230 Identities=9% Similarity=-0.017 Sum_probs=118.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCcee---eee----eccccceEEEEEeCC---CCEEEEEe-c-------c
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQE---RSA----VLSSMTLSSLCILPD---NCTMLVGC-W-------D 643 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~---~~~----~~~~~~V~sl~~spd---~~~Lasgs-~-------D 643 (917)
.-.+|+|.|+|+.++.+...|.|++++.. +... ..+ .........++++|+ +..|.++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999845556678999988853 3221 111 112345678999996 44444443 2 2
Q ss_pred cEEEEEEeccC--e--eeE----Eec---cCCCceeEEEecCCCCEEEEEEC-------------CCeEEEEeCCCCCCC
Q psy3053 644 SCVVIYDVECG--R--IVT----ELA---GHEDAISCVAWDEKRKRLISGSW-------------DCTVRVWNTGASWSH 699 (917)
Q Consensus 644 g~I~Iwdl~tg--~--~i~----~l~---~H~~~Vt~l~~spd~~~L~Sgs~-------------DgtI~vWdl~~~~~~ 699 (917)
..|..++...+ + ... .+. .....-..++|.|||.+.++.+. .|.|.-.+.......
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666533 1 111 111 11112357999999965555433 245666665432100
Q ss_pred ccCC------cceeeeccCCCceEEEEEeCCCCEEEEEECCC--eEEEEECCCCe-------------------------
Q psy3053 700 MKPS------KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG--ELIIWSLENHL------------------------- 746 (917)
Q Consensus 700 ~~~~------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~------------------------- 746 (917)
..+. .......++ .....++|+|+...|.++.... .=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 0000 011112233 3467899999433444443321 11121111111
Q ss_pred ------eeEEecCCCCCCeEEEEEec-------CCCEEEEEeCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCCC
Q psy3053 747 ------MTQQLSDDINASVNGVLFSE-------DGCRVLSCGNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEE 809 (917)
Q Consensus 747 ------~~~~l~~~h~~~V~~v~fsp-------dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~ 809 (917)
+...+ .+...+..++|.. +|.++++....+.|...++..+....... ....+..+++.+++
T Consensus 257 ~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 257 VAGTEQPVFYW--KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp CTTSCCCSEEE--SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCccCCeEEe--CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111 1223566777764 46666666667778777776654443322 13467778887777
Q ss_pred EEEEEe
Q psy3053 810 KVILGG 815 (917)
Q Consensus 810 ~lv~gs 815 (917)
.+.+++
T Consensus 335 ~lyv~t 340 (353)
T 2g8s_A 335 YLYVLT 340 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 666554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.31 Score=53.57 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=101.6
Q ss_pred cccEEEEEEecc--Ceee-EEecc-----CCCceeEEEecC--CCC-EEEEEE-C--CCeEEEEeCCCCCCCccCCccee
Q psy3053 642 WDSCVVIYDVEC--GRIV-TELAG-----HEDAISCVAWDE--KRK-RLISGS-W--DCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 642 ~Dg~I~Iwdl~t--g~~i-~~l~~-----H~~~Vt~l~~sp--d~~-~L~Sgs-~--DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
.+|.|.++|.++ ++.. -.+.+ ..-....+.+.+ ++. +|+.+. . +.+|.+|++...... ....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~----~~~~ 156 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS----LLHL 156 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE----EEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE----EEEE
Confidence 689999999873 2221 12222 223566777655 343 454443 2 568888887654211 1111
Q ss_pred eec--cCCCceEEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC
Q psy3053 708 SQL--DLDNRIKCLAISKDNNQLAVGT-----------------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 708 ~~~--~h~~~V~~l~~spdg~~Lasgs-----------------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg 768 (917)
... ..-.....+++.++|.+.++.. ..|.|.-+|.. +. ..+. ..-...+.++|+||+
T Consensus 157 ~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~-~~l~~pNGia~spDg 232 (355)
T 3sre_A 157 KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVA-EGFDFANGINISPDG 232 (355)
T ss_dssp EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEE-EEESSEEEEEECTTS
T ss_pred eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEee-cCCcccCcceECCCC
Confidence 111 1234578999999998777654 12556666653 22 2222 223467899999999
Q ss_pred CEEEEEe-CCCeEEEEECCC-CeEE--EEeecCCceEEEEEeC-CCEEEEEe-CC-CeEEEEECC
Q psy3053 769 CRVLSCG-NNCMLNVYDLTT-GMQV--CNKVFEEKLLCLSWAG-EEKVILGG-AL-GMVYLVDLI 826 (917)
Q Consensus 769 ~~L~s~s-~Dg~I~iwDl~t-g~~i--~~~~~~~~i~~l~~s~-~~~lv~gs-~d-G~I~vwdl~ 826 (917)
+.++.+. ..+.|..|++.. +... ..+...+....++.+. +|.+.+++ .+ +.|..|+..
T Consensus 233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 8887765 467899999853 3322 2234456677788887 47766644 23 345445443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.12 Score=57.72 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=99.4
Q ss_pred EeCCCcEEEEEecCCceEEEeccCCceeeeeecc----ccceEEEEEeCCCCEEEEEecccEEEEEEeccCee-------
Q psy3053 588 ICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS----SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI------- 656 (917)
Q Consensus 588 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~----~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~------- 656 (917)
.+.+|..++.+ .++.||.-++.++..-+.+... -..+..+..+|+|++||..+ +..|.|-.+..+..
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 44566666655 4588888888755555555554 22578899999999999886 45788888773320
Q ss_pred -----eEEecc------CCCceeEEEecC---CCCEEEEEECCCeEEEEeCCCCCCCcc---CCcceeeeccCCCceEEE
Q psy3053 657 -----VTELAG------HEDAISCVAWDE---KRKRLISGSWDCTVRVWNTGASWSHMK---PSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 657 -----i~~l~~------H~~~Vt~l~~sp---d~~~L~Sgs~DgtI~vWdl~~~~~~~~---~~~~~~~~~~h~~~V~~l 719 (917)
...+.- ...+|..+.|+| .+..|++-..|++|++||+........ ..............|.++
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 112221 256799999999 456899999999999999987421111 000111112233678899
Q ss_pred EEeCCCCEEEEEE--CCCeEEEE
Q psy3053 720 AISKDNNQLAVGT--EAGELIIW 740 (917)
Q Consensus 720 ~~spdg~~Lasgs--~dG~I~iw 740 (917)
+|..++-.|.+.+ .+|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999886666655 77877654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.24 Score=52.84 Aligned_cols=230 Identities=13% Similarity=0.013 Sum_probs=119.0
Q ss_pred CCCCEEEEEecc----cEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEEC----C-----CeEEEEeCCCC
Q psy3053 632 PDNCTMLVGCWD----SCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSW----D-----CTVRVWNTGAS 696 (917)
Q Consensus 632 pd~~~Lasgs~D----g~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~----D-----gtI~vWdl~~~ 696 (917)
-++.+++.|+.+ ..+.+||..+++-... +......- +++.. ++..++.|+. + ..+.++|..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355666666642 3578888877654322 11111111 22222 5566666665 2 35788887765
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.-.... . .........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.+
T Consensus 101 ~W~~~~--~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iy 172 (308)
T 1zgk_A 101 QWSPCA--P---MSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLY 172 (308)
T ss_dssp EEEECC--C---CSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEE
T ss_pred eEeECC--C---CCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEE
Confidence 210000 0 0011111122222 56777777643 358889988765433221111111112222 266677
Q ss_pred EEEeCC-----CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEE--EecC
Q psy3053 772 LSCGNN-----CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQ--VRAH 837 (917)
Q Consensus 772 ~s~s~D-----g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~--l~~h 837 (917)
+.|+.+ ..+.+||+.+.+-........ .-.+++..++..++.|+.+ ..+.+||+.+.+-... +...
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 777654 458899998876543322221 1223333455456666654 5699999988764332 2211
Q ss_pred CCceEEEeecCCEEEEEeCC-----CeEEEEECcCCeEE
Q psy3053 838 KDAVLSLHFDNCTMLVGCWD-----SCVVIYDVECGRIV 871 (917)
Q Consensus 838 ~~~V~sis~dg~~Lasgs~D-----G~I~Iwdl~tg~~l 871 (917)
.....++..++++++.|+.+ ..+.+||..+.+..
T Consensus 253 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 253 RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 22223334577788888754 45788888877643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.34 Score=51.75 Aligned_cols=221 Identities=10% Similarity=-0.013 Sum_probs=116.3
Q ss_pred EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-----C------CeEEEEECCCCee
Q psy3053 679 LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-----A------GELIIWSLENHLM 747 (917)
Q Consensus 679 L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-----d------G~I~iwDl~~~~~ 747 (917)
++.|+ ..+..||..+.. . ...............+...++.+++.|+. . ..+..||..+.+-
T Consensus 8 ~~~GG--~~~~~yd~~~~~--W----~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANE--C----YCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEET--TEEEEEETTTTE--E----EEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEcC--CceEEECCCCCe--E----ecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 34444 568889987652 1 01111111122233334457788888873 1 1277889887754
Q ss_pred eEEecCCCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeC-
Q psy3053 748 TQQLSDDINASVNGVLFSEDGCRVLSCGNN--------CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGA- 816 (917)
Q Consensus 748 ~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~- 816 (917)
.. +...........+..-+++.++.|+.+ ..+.+||..+++-......+. .-.+++..++..++.|+.
T Consensus 80 ~~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 158 (315)
T 4asc_A 80 LG-MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG 158 (315)
T ss_dssp EE-CCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred EE-CCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCC
Confidence 32 221111111111122266666666632 458999998876443322222 122333344545666665
Q ss_pred -----CCeEEEEECCCCEEEEE--EecCCCceEEEeecCCEEEEEeCCC-----eEEEEECcCCeEEEEecCCC--CCEE
Q psy3053 817 -----LGMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTMLVGCWDS-----CVVIYDVECGRIVTELAGHE--DAIS 882 (917)
Q Consensus 817 -----dG~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~Lasgs~DG-----~I~Iwdl~tg~~l~~l~~h~--~~V~ 882 (917)
...+.+||..+.+-... +........++..++++++.|+.++ .+.+||..+.+....-.... ....
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 24799999988754332 2212222334455888888887654 58889998876544322111 1112
Q ss_pred EEEEcCCCCEEEEEeCCC--------------cEEEEecCcc
Q psy3053 883 CVAWDEKRKRLISGNLVG--------------APKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG--------------~V~IWdl~~~ 910 (917)
.+.+ +++.++.||.++ .+.+||++..
T Consensus 239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 2222 567777777642 3667777654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=1.9 Score=47.23 Aligned_cols=193 Identities=12% Similarity=0.128 Sum_probs=108.8
Q ss_pred eEEEEEeCCCcEEEEE------------ecCCceEEEeccCCc-eeeeeecc-------ccceEEEEEeC--CCC--EEE
Q psy3053 583 ITAVAICGEGISVASV------------GRDAMLKIHSLKTGR-QERSAVLS-------SMTLSSLCILP--DNC--TML 638 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasg------------s~Dg~I~IWd~~t~~-~~~~~~~~-------~~~V~sl~~sp--d~~--~La 638 (917)
.-.++..|+|..++++ ..+|.|.++|..+.. ....+... ......+.+.+ ++. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456667877554444 168999999987421 12222221 22345566555 443 444
Q ss_pred EEec--ccEEEEEEeccCe----eeEEeccC-CCceeEEEecCCCCEEEEEEC---C------------CeEEEEeCCCC
Q psy3053 639 VGCW--DSCVVIYDVECGR----IVTELAGH-EDAISCVAWDEKRKRLISGSW---D------------CTVRVWNTGAS 696 (917)
Q Consensus 639 sgs~--Dg~I~Iwdl~tg~----~i~~l~~H-~~~Vt~l~~spd~~~L~Sgs~---D------------gtI~vWdl~~~ 696 (917)
+-.. +.+|.+|+++.+. .+..+.+. -...+.+++.++|.+.++... | ..=.+|.+..+
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 5688888887542 23334332 235788999999987776541 1 12233333222
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCC-Cee--eEEecCCCCCCeEEEEEec-CCCEE
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLEN-HLM--TQQLSDDINASVNGVLFSE-DGCRV 771 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~-~~~--~~~l~~~h~~~V~~v~fsp-dg~~L 771 (917)
........-...+.++|+||++.+.++. ..+.|..|++.. +.. .+.+ ...+....+++.+ +|++.
T Consensus 212 --------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 212 --------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp --------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEE
T ss_pred --------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEE
Confidence 1111122234568999999998777665 568899999863 322 1223 2346678889998 58877
Q ss_pred EEEeCC-CeEEEEEC
Q psy3053 772 LSCGNN-CMLNVYDL 785 (917)
Q Consensus 772 ~s~s~D-g~I~iwDl 785 (917)
+++..+ +.|..|+.
T Consensus 282 va~~~~g~~v~~~~P 296 (355)
T 3sre_A 282 VGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEESCHHHHHSCCT
T ss_pred EEecCCceEEEEECC
Confidence 766544 34444443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=2.2 Score=47.65 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=151.2
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
+.+|.|.|+.++..+..-. -..-+.-.+|..+.+|.-. ..++.++|+++. ...........|.--.|-
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K--------~klks~~~~e~VvfWkWi 114 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWI 114 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTT--------EEEEEEECSSCCCEEEEE
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHh--------hhhcceecCCCceEEEec
Confidence 3478888988765442211 1122445678777777665 789999999875 223333344566666665
Q ss_pred CCCCEEEEEECCCeEEEEECCCC-eeeEEecC---CCCCCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENH-LMTQQLSD---DINASVNGVLFSEDGCRVLSCGN-------NCMLNVYDLTTGMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~-~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~-------Dg~I~iwDl~tg~~i 791 (917)
.+. .|+..+ +..|+-|++... .+.+.+.. -....|..-..+++.++++..|- .|.+.+|+.+.+...
T Consensus 115 s~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ 192 (494)
T 1bpo_A 115 SLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 192 (494)
T ss_dssp ETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE
T ss_pred CCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc
Confidence 543 444444 457999999753 33333331 12457777888899999886552 467889998766443
Q ss_pred EEeecCCceEEEEEeCC---CEEEE-EeC---CCeEEEEECCCC--------EEEEEEe----cCCCceEEE--eecCCE
Q psy3053 792 CNKVFEEKLLCLSWAGE---EKVIL-GGA---LGMVYLVDLIQV--------QLLKQVR----AHKDAVLSL--HFDNCT 850 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~---~~lv~-gs~---dG~I~vwdl~~~--------~~i~~l~----~h~~~V~si--s~dg~~ 850 (917)
....|......+...++ ..+++ +.. .+.+++.++... +....+. ...+-..++ +..-..
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 22222221112222211 11222 222 278888888432 1111111 112223334 666777
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..-+.-|.|++||++++.++..-+-...+|-.-+-+.+..-++.....|.|.--.++
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred EEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 8889999999999999999998877667777766666665666666678877655554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.66 Score=49.50 Aligned_cols=181 Identities=9% Similarity=-0.025 Sum_probs=90.8
Q ss_pred CceEEEeccCCceee-eeeccccceEEEEEeCCCCEEEEEec-----------ccEEEEEEeccCeeeEE--eccCCCce
Q psy3053 602 AMLKIHSLKTGRQER-SAVLSSMTLSSLCILPDNCTMLVGCW-----------DSCVVIYDVECGRIVTE--LAGHEDAI 667 (917)
Q Consensus 602 g~I~IWd~~t~~~~~-~~~~~~~~V~sl~~spd~~~Lasgs~-----------Dg~I~Iwdl~tg~~i~~--l~~H~~~V 667 (917)
..+.+||..+++-.. .+..........+...++..++.|+. ...+..||..+++-... +.......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 567888887765332 11111122233334457788888874 12377888887654221 11111111
Q ss_pred eEEEecCCCCEEEEEECC--------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-C----
Q psy3053 668 SCVAWDEKRKRLISGSWD--------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-A---- 734 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~D--------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-d---- 734 (917)
+++.. ++..++.|+.+ ..+.++|..+.. .. ........... .+++ ..++++++.|+. +
T Consensus 93 -~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~---~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 93 -GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WG---ESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp -EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EE---ECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCB
T ss_pred -eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc--Ee---ECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcc
Confidence 12222 55666666632 458888887652 00 00000011111 1222 235677777776 2
Q ss_pred -CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeEEE
Q psy3053 735 -GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTGMQVC 792 (917)
Q Consensus 735 -G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg~~i~ 792 (917)
..+.+||+.+.+-...-. .........+..-+++.++.|+.++ .+.+||+.+.+-..
T Consensus 164 ~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred cceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 468999998765333221 1111111122223677777777654 57888888775443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.072 Score=58.17 Aligned_cols=188 Identities=9% Similarity=0.039 Sum_probs=102.1
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE--e-CCCCEEEEE-ECCCeEEEEECCCCeeeEEec
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--S-KDNNQLAVG-TEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~--s-pdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~ 752 (917)
..++.++.||.|.-.|..++......... ...++....- . .++..++.. +.||.|..++..+|.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE------NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG------GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC------ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence 57888899999999998777322211100 0011111000 0 122333333 589999999998886554433
Q ss_pred CC---CCCCeEE---EEE-e----cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce--------EEEEE------eC
Q psy3053 753 DD---INASVNG---VLF-S----EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL--------LCLSW------AG 807 (917)
Q Consensus 753 ~~---h~~~V~~---v~f-s----pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i--------~~l~~------s~ 807 (917)
.. ...++.. ... . ..+..+++++.+|.+...|+.+|+.+......... .|... ..
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 11 1112221 000 0 14557889999999999999999999887765321 12221 12
Q ss_pred CCEEEEEeCCCeEEEEECCCCEE----EEEEecCCCc--e---EEEeecCCEEEEEeCCCeEEEEECcCCeEEE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQL----LKQVRAHKDA--V---LSLHFDNCTMLVGCWDSCVVIYDVECGRIVT 872 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~----i~~l~~h~~~--V---~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~ 872 (917)
++.++.|..+..+.+.+ ++|+. .......... + ..++.|+.+ +.++.||.|..+|..+|+.+.
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 34677777777777666 34431 1111111100 0 000123555 557888999999988888765
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.93 E-value=1.1 Score=47.64 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=115.9
Q ss_pred EEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEEC----CC-------eEEEEeCCCCCCCccCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSW----DC-------TVRVWNTGASWSHMKPS 703 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~----Dg-------tI~vWdl~~~~~~~~~~ 703 (917)
.++.|+. .+..||..+++-... +..........+...++..++.|+. ++ .+.++|..+..-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-- 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-- 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC--
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC--
Confidence 4444543 378888887764431 1111111122223346677777773 12 166778765421000
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECC-------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
.. ......-.+++.. ++.+++.|+.+ ..+.+||..+.+-...-. .........+...+++.++.|+.
T Consensus 94 ~~----~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 94 PP----LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp SC----BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEEETTEEEEECCE
T ss_pred CC----CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEEECCEEEEEcCC
Confidence 00 0001111122222 56777777754 357888988765433221 11111111122246667777663
Q ss_pred ------CCeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEE--EEecCCCce
Q psy3053 777 ------NCMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLK--QVRAHKDAV 841 (917)
Q Consensus 777 ------Dg~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~--~l~~h~~~V 841 (917)
-..+.+||..+.+-........ .-.+++..++..++.|+.+ ..+.+||+.+.+-.. .+.......
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 2358999998876544322222 1223334455466666643 457789988765332 222222223
Q ss_pred EEEeecCCEEEEEeCC--------------CeEEEEECcCCeEEEE
Q psy3053 842 LSLHFDNCTMLVGCWD--------------SCVVIYDVECGRIVTE 873 (917)
Q Consensus 842 ~sis~dg~~Lasgs~D--------------G~I~Iwdl~tg~~l~~ 873 (917)
.++..++++++.|+.+ ..+.+||..+.+....
T Consensus 248 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 3445677777877754 3578889887775544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.90 E-value=1 Score=47.95 Aligned_cols=188 Identities=12% Similarity=0.044 Sum_probs=100.7
Q ss_pred EEeCCCCEEEEEEC----CC-------eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-------CeEE
Q psy3053 720 AISKDNNQLAVGTE----AG-------ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-------CMLN 781 (917)
Q Consensus 720 ~~spdg~~Lasgs~----dG-------~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-------g~I~ 781 (917)
+...++.+++.|+. ++ .+..||..+.+-...-.......-.+++. -+++.++.|+.+ ..+.
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEE
Confidence 34457788888873 12 27788988765433211111111122222 266777777754 3588
Q ss_pred EEECCCCeEEEEeecCCce--EEEEEeCCCEEEEEeC------CCeEEEEECCCCEEEEE--EecCCCceEEEeecCCEE
Q psy3053 782 VYDLTTGMQVCNKVFEEKL--LCLSWAGEEKVILGGA------LGMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTM 851 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i--~~l~~s~~~~lv~gs~------dG~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~L 851 (917)
+||..+.+-......+.+. .+++...+..++.|+. ...+.+||..+.+-... +........++..+++.+
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 210 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIV 210 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEE
Confidence 8999887654433332221 1233334435556653 24699999988764332 221222223345678888
Q ss_pred EEEeCC-----CeEEEEECcCCeEEEEe--cCCCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEEecCcc
Q psy3053 852 LVGCWD-----SCVVIYDVECGRIVTEL--AGHEDAISCVAWDEKRKRLISGNLV--------------GAPKLYATEFY 910 (917)
Q Consensus 852 asgs~D-----G~I~Iwdl~tg~~l~~l--~~h~~~V~slafSpdg~~LaSgs~D--------------G~V~IWdl~~~ 910 (917)
+.|+.+ ..+.+||..+.+....- .........+. .+++.++.||.+ ..+.+||++..
T Consensus 211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 887754 35778998877644321 11111112222 256777777754 35778887654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.80 E-value=2.8 Score=45.63 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=122.9
Q ss_pred CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee----eccCCCceEEEEEeCC---CCEEEEE-E--
Q psy3053 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS----QLDLDNRIKCLAISKD---NNQLAVG-T-- 732 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~----~~~h~~~V~~l~~spd---g~~Lasg-s-- 732 (917)
.-...+.|+|.|+|..+++--..|.|.+++...+.. ..... ..........++++|+ +..|.+. +
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 345678999999998777654489999997654311 01110 1223556889999995 3444332 2
Q ss_pred CCCeEEEEECCCC----------eee-EEecCCCCCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCC
Q psy3053 733 EAGELIIWSLENH----------LMT-QQLSDDINASVNGVLFSEDGCRVLSCGN-------------NCMLNVYDLTTG 788 (917)
Q Consensus 733 ~dG~I~iwDl~~~----------~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~-------------Dg~I~iwDl~tg 788 (917)
.++.|.-|.+..+ +.+ ..+..........++|.|||.+.++.+. .|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3456766766541 111 1222122234567999999987777553 234444443321
Q ss_pred ---------eEEEEeecCCceEEEEEeCCCEEEEEeCCC--eEEEEECCCCE------------------EEEEEecCCC
Q psy3053 789 ---------MQVCNKVFEEKLLCLSWAGEEKVILGGALG--MVYLVDLIQVQ------------------LLKQVRAHKD 839 (917)
Q Consensus 789 ---------~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG--~I~vwdl~~~~------------------~i~~l~~h~~ 839 (917)
..+....+ .....++|++++.+.++.... .-.+--+..+. ++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11111111 234567888877776655421 11111111111 1222222222
Q ss_pred ceEEEee-cCCEEEEEeCCCeEEEEECcCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 840 AVLSLHF-DNCTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 840 ~V~sis~-dg~~Lasgs~DG~I~Iwdl~tg~~----l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
....+.+ +|..++..-..+.|....++.+.. ...+.+...++.+++..|||.++++.+
T Consensus 264 ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 3445544 455555555556676666654432 233444457899999999998777654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.62 Score=50.59 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=115.1
Q ss_pred CCCEEEEEecc-cEEEEEEecc--Cee--eEEeccCCCceeEEEecCCCCEEEEEEC-C---------CeEEEEeCCCCC
Q psy3053 633 DNCTMLVGCWD-SCVVIYDVEC--GRI--VTELAGHEDAISCVAWDEKRKRLISGSW-D---------CTVRVWNTGASW 697 (917)
Q Consensus 633 d~~~Lasgs~D-g~I~Iwdl~t--g~~--i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-D---------gtI~vWdl~~~~ 697 (917)
++.+.+.|+.+ ..+.++|..+ .+- +..+......-.+++.. ++..++.|+. + ..+.+||..+..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 66666666653 4688888764 222 22222111111122222 5566676665 2 468888887652
Q ss_pred CCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC---------------------------------------CeEE
Q psy3053 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---------------------------------------GELI 738 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---------------------------------------G~I~ 738 (917)
- . ...........-.+++ ..++++++.|+.+ ..+.
T Consensus 98 W--~---~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 98 W--V---KLMSHAPMGMAGHVTF-VHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp E--E---ECSCCCSSCCSSEEEE-EETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred E--E---ECCCCCCcccccceEE-EECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 0 0 0000010111111222 2567888888764 4789
Q ss_pred EEECCCCeeeEEecCCCCCCe-EEEEEecCCCEEEEEeC------CCeEEEEEC--CCCeEEEEeecC--Cc--eEEEEE
Q psy3053 739 IWSLENHLMTQQLSDDINASV-NGVLFSEDGCRVLSCGN------NCMLNVYDL--TTGMQVCNKVFE--EK--LLCLSW 805 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V-~~v~fspdg~~L~s~s~------Dg~I~iwDl--~tg~~i~~~~~~--~~--i~~l~~ 805 (917)
+||..+.+-...-.......- .+++. -+++.++.|+. ...+..||+ .+.+-....... .. -.+++.
T Consensus 172 ~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 172 SFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred EEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 999987654332211111111 23333 25666666653 235777876 444333222221 11 122344
Q ss_pred eCCCEEEEEeCC----------------------CeEEEEECCCCE--EEEEEecCCCceEEEeecCCEEEEEeCCC---
Q psy3053 806 AGEEKVILGGAL----------------------GMVYLVDLIQVQ--LLKQVRAHKDAVLSLHFDNCTMLVGCWDS--- 858 (917)
Q Consensus 806 s~~~~lv~gs~d----------------------G~I~vwdl~~~~--~i~~l~~h~~~V~sis~dg~~Lasgs~DG--- 858 (917)
.++..++.|+.+ ..+.+||+.+.+ .+..+......-.++..++++++.|+.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGC
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCC
Confidence 455456666632 257889987654 44444333333445567888888888653
Q ss_pred ---eEEEEECcCCeEEEEe
Q psy3053 859 ---CVVIYDVECGRIVTEL 874 (917)
Q Consensus 859 ---~I~Iwdl~tg~~l~~l 874 (917)
.|.++++++++.+...
T Consensus 331 ~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC
T ss_pred EeeeEEEEEEcCcEeEeee
Confidence 4566688877765544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.017 Score=63.20 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEE--ecCCCEEEEE--eCCCeEEEEECCCCeEEEEeecCC---
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLF--SEDGCRVLSC--GNNCMLNVYDLTTGMQVCNKVFEE--- 798 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~f--spdg~~L~s~--s~Dg~I~iwDl~tg~~i~~~~~~~--- 798 (917)
..+++++.||.|.-+|..+|+...++......++....- .+.+..++.+ +.||.|..++..+|..........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 578899999999999999999999987331122222110 0112234433 589999999999886655444321
Q ss_pred --ceEE---EEE------eCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC-------ceEEEe-------ecCCEEEE
Q psy3053 799 --KLLC---LSW------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD-------AVLSLH-------FDNCTMLV 853 (917)
Q Consensus 799 --~i~~---l~~------s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-------~V~sis-------~dg~~Las 853 (917)
++.. ... +.++.+++|+.+|.+...|+.+|+.+.++..... ...|.. -.+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 2221 001 2566899999999999999999999998864321 011111 12456777
Q ss_pred EeCCCeEEEEECcCC
Q psy3053 854 GCWDSCVVIYDVECG 868 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg 868 (917)
|..+..+.+.+ ++|
T Consensus 171 g~~~y~v~~~~-~sG 184 (339)
T 2be1_A 171 GKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEECEECC-TTS
T ss_pred ecceEEEEEEC-CCC
Confidence 77777666655 344
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.54 Score=51.08 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=109.0
Q ss_pred CCcEEEEEecC-CceEEEeccC--Cceeeeeecc-ccceEEEEEeCCCCEEEEEec-c---------cEEEEEEeccCee
Q psy3053 591 EGISVASVGRD-AMLKIHSLKT--GRQERSAVLS-SMTLSSLCILPDNCTMLVGCW-D---------SCVVIYDVECGRI 656 (917)
Q Consensus 591 dg~~Lasgs~D-g~I~IWd~~t--~~~~~~~~~~-~~~V~sl~~spd~~~Lasgs~-D---------g~I~Iwdl~tg~~ 656 (917)
++..++.|+.+ ..+.++|..+ .+-....... .......+..-++++++.|+. + +.+.+||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 56666666543 4677888763 2211111111 111111122236777777776 2 4688899887653
Q ss_pred eEE--ec-cCCCceeEEEecCCCCEEEEEECC---------------------------------------CeEEEEeCC
Q psy3053 657 VTE--LA-GHEDAISCVAWDEKRKRLISGSWD---------------------------------------CTVRVWNTG 694 (917)
Q Consensus 657 i~~--l~-~H~~~Vt~l~~spd~~~L~Sgs~D---------------------------------------gtI~vWdl~ 694 (917)
... +. .......++. .+++.++.|+.+ ..+.++|..
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 322 11 1111122222 466777888765 478888987
Q ss_pred CCCCCccCCcceeeeccCCCce-EEEEEeCCCCEEEEEEC------CCeEEEEEC--CCCeeeEEecC-C-CCCCeEEEE
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRI-KCLAISKDNNQLAVGTE------AGELIIWSL--ENHLMTQQLSD-D-INASVNGVL 763 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~------dG~I~iwDl--~~~~~~~~l~~-~-h~~~V~~v~ 763 (917)
+.. .... ........- .+++. -++.+++.|+. ...+..+|+ .+.+-. .+.. . ......+.+
T Consensus 177 ~~~-----W~~~-~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~-~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 177 TQQ-----WSYA-GESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN-KLAPVSSPDGVAGGFA 248 (357)
T ss_dssp TTE-----EEEE-EECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE-ECCCSSTTTCCBSCEE
T ss_pred CCc-----EEEC-CCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE-ecCCCCCCcccccceE
Confidence 652 0111 111111111 22222 25667777653 245777877 433222 2211 1 111112223
Q ss_pred EecCCCEEEEEeCC----------------------CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCCC-
Q psy3053 764 FSEDGCRVLSCGNN----------------------CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGALG- 818 (917)
Q Consensus 764 fspdg~~L~s~s~D----------------------g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~dG- 818 (917)
...+++.++.|+.+ ..+.+||+.+.+-...-..+. .-.++...++..++.|+.++
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGG
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCC
Confidence 33466677777632 257789988764333222221 11222333444677777542
Q ss_pred -----eEEEEECCCCEEEEEE
Q psy3053 819 -----MVYLVDLIQVQLLKQV 834 (917)
Q Consensus 819 -----~I~vwdl~~~~~i~~l 834 (917)
.+.++++.+++.+...
T Consensus 329 ~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEeeeEEEEEEcCcEeEeee
Confidence 4566677776655443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.32 E-value=3.7 Score=43.76 Aligned_cols=209 Identities=8% Similarity=-0.019 Sum_probs=112.2
Q ss_pred eCCCcEEEEEec--CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc--------------cEEEEEEec
Q psy3053 589 CGEGISVASVGR--DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--------------SCVVIYDVE 652 (917)
Q Consensus 589 Spdg~~Lasgs~--Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--------------g~I~Iwdl~ 652 (917)
+.+|..|+-... ++.|...+.+ |.....+... .+-.+++++.+|.-+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 456666665542 3444444433 3333333322 133467888888877553 467777777
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEE--CCCe--EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGS--WDCT--VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs--~Dgt--I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
.++...... .. +..++++++.|+-.. .++. |..-++... .......+.. .+++++++.|
T Consensus 97 g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--------~~~~lt~~~~----~~~~~~g~~i 159 (302)
T 3s25_A 97 GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--------EKKKIKNHYL----FTCNTSDRYF 159 (302)
T ss_dssp SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC--------CCEEEESSCC----CCSEEETTEE
T ss_pred CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC--------CeEEEeCCCc----eEeeEECCEE
Confidence 665333222 11 236677888888766 3444 444455432 1111222221 3457788888
Q ss_pred EEEEC-CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECCCCeEEEEeecCCceEEEEE
Q psy3053 729 AVGTE-AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--CMLNVYDLTTGMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 729 asgs~-dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--g~I~iwDl~tg~~i~~~~~~~~i~~l~~ 805 (917)
.-.+. ...|...++..+....... +... ..++|++..|+-...+ ..|..-++..+.... + ....+..+++
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-L-t~~~~~~~~~ 232 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYD----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV-L-TEANIEHYNV 232 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEEC----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-C-SCSCEEEEEE
T ss_pred EEEeCCCceEEEEECCCCCEEEEeC----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-E-eCCCcceEEE
Confidence 76655 5788888887766544333 2222 3466888888876644 356666665543221 1 2334455555
Q ss_pred eCCCEEEEEe--CCCeEEEEECCC
Q psy3053 806 AGEEKVILGG--ALGMVYLVDLIQ 827 (917)
Q Consensus 806 s~~~~lv~gs--~dG~I~vwdl~~ 827 (917)
.++ .+..++ ..+.|...++..
T Consensus 233 ~g~-~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 233 YGS-LIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ETT-EEEEEECSSSCEEEEEETTS
T ss_pred CCC-EEEEEECCCCcEEEEEECCC
Confidence 555 444332 235666666644
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.31 E-value=1.3 Score=49.25 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCCCEEEEEecccEEEEEEeccCeeeEEeccC----CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC-----
Q psy3053 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGH----EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP----- 702 (917)
Q Consensus 632 pd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H----~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~----- 702 (917)
.+|..++++- ++.||.-++..+..-+.+... -+.|..+..+|+|++||..+ +.+|.|-.+..+......
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3444444433 466666666543333333322 23578899999999999876 568999888743211110
Q ss_pred -Ccceeeecc-----CCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCe--eeEEecC--------CCCCCeEEEE
Q psy3053 703 -SKSLVSQLD-----LDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHL--MTQQLSD--------DINASVNGVL 763 (917)
Q Consensus 703 -~~~~~~~~~-----h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~--~~~~l~~--------~h~~~V~~v~ 763 (917)
........+ ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+.. .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 111111111 3578999999995 4689999999999999998621 12 2221 2226788999
Q ss_pred EecCCCEEEEEe--CCCeEEEE
Q psy3053 764 FSEDGCRVLSCG--NNCMLNVY 783 (917)
Q Consensus 764 fspdg~~L~s~s--~Dg~I~iw 783 (917)
|.++|-.|...+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999888777755 77877654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.30 E-value=2.5 Score=48.53 Aligned_cols=260 Identities=9% Similarity=0.019 Sum_probs=147.6
Q ss_pred EEEEecCCceEEEeccCCceeeeeeccc-------------------------cceE--EEEEe---CCCCEEEEEec-c
Q psy3053 595 VASVGRDAMLKIHSLKTGRQERSAVLSS-------------------------MTLS--SLCIL---PDNCTMLVGCW-D 643 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-------------------------~~V~--sl~~s---pd~~~Lasgs~-D 643 (917)
+.||+..|.|+|+-+.+++.++.+..-+ +... .+.+. -||++|..-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999998887766543210 1111 12222 25667776653 5
Q ss_pred cEEEEEEeccCeeeEEecc-CCCceeEEEec--CCCCEEEEEECCCeEE-----EEeCCCCCCCc-------cCCcceee
Q psy3053 644 SCVVIYDVECGRIVTELAG-HEDAISCVAWD--EKRKRLISGSWDCTVR-----VWNTGASWSHM-------KPSKSLVS 708 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~s--pd~~~L~Sgs~DgtI~-----vWdl~~~~~~~-------~~~~~~~~ 708 (917)
..|...+++.-++-+.+.- ....+.++++- |+..+++.++....=. ...++... .. .....+..
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~-~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDEN-SYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTT-EEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChh-hceEEEEEcCCccEEEE
Confidence 5677778877766555442 45678888885 6888888887532110 00000000 00 00000000
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECCC---------------eEEEE-------------------------ECCC----
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEAG---------------ELIIW-------------------------SLEN---- 744 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~dG---------------~I~iw-------------------------Dl~~---- 744 (917)
...-+.....+...++|.+.++.+.+. .+.++ |.+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 000112223344456667766665421 13333 3332
Q ss_pred CeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC------e-------EEEEeecCCceEEEEEeCCCE
Q psy3053 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTG------M-------QVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg------~-------~i~~~~~~~~i~~l~~s~~~~ 810 (917)
+.....+. +.......+.++|||+++++++. +.++.++|++.- + ........-.....+|+++|.
T Consensus 312 ~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 312 DSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp CCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred CCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 11111111 12345567889999999888764 778999998731 1 234455566678899999886
Q ss_pred EEEEe-CCCeEEEEECCCC----------EEEEEEecCCCceEEE-------eecCCEEEEEeC
Q psy3053 811 VILGG-ALGMVYLVDLIQV----------QLLKQVRAHKDAVLSL-------HFDNCTMLVGCW 856 (917)
Q Consensus 811 lv~gs-~dG~I~vwdl~~~----------~~i~~l~~h~~~V~si-------s~dg~~Lasgs~ 856 (917)
..+.- -|..|..|++... ..+..+..|-.+-.-. .+||++|++...
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 55544 7899999999653 4666676665443322 458888888743
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.23 E-value=2.6 Score=47.74 Aligned_cols=112 Identities=10% Similarity=0.109 Sum_probs=61.5
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-cCCcceeeeccCCCceEEEEEeCC---CCEEEEEEC-------
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM-KPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTE------- 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~------- 733 (917)
...++|+|.|+|+++++-...+.|.+++..++.... ..................++++|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999877764433478888754331100 000000000013456789999995 444544332
Q ss_pred ------CCeEEEEECCCC-------eeeE-EecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 734 ------AGELIIWSLENH-------LMTQ-QLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 734 ------dG~I~iwDl~~~-------~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
...|.-++...+ +.+. .+..........++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655322 1111 222222345789999999987777653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.61 Score=47.32 Aligned_cols=148 Identities=9% Similarity=-0.069 Sum_probs=82.0
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCee------eEEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI------VTELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~------i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~ 694 (917)
..+..++|+|++.+.++ .+|.++-.+..++.. -..+- +-. .-.++.|.++|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 35779999999987766 677766555433211 11110 111 1478899999987777 56988877753
Q ss_pred CCCCC-ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe------eeEEecCCCCCCeEEEEEecC
Q psy3053 695 ASWSH-MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL------MTQQLSDDINASVNGVLFSED 767 (917)
Q Consensus 695 ~~~~~-~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~------~~~~l~~~h~~~V~~v~fspd 767 (917)
+.... .... ....-...-..+..+.+.|+|.+.++. ||.++-+...++. ....+-...-..-+.+.|.++
T Consensus 116 ~~~~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred cCCCCceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 32111 0000 001111122467999999999988877 7776543332211 011111122224455668888
Q ss_pred CCEEEEEeCCCeE
Q psy3053 768 GCRVLSCGNNCML 780 (917)
Q Consensus 768 g~~L~s~s~Dg~I 780 (917)
|...++. ++.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8766665 6543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.72 E-value=3.3 Score=44.19 Aligned_cols=179 Identities=11% Similarity=-0.063 Sum_probs=101.2
Q ss_pred EEEEeCCCCEEEEEECC--------------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe----CCCe
Q psy3053 718 CLAISKDNNQLAVGTEA--------------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG----NNCM 779 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~d--------------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s----~Dg~ 779 (917)
+--++++|+.|.-+... +.|+..++..++...... .. +..++++++.|+-+. ....
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~----~~--~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP----DP--CIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC----SC--EEEEEEETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec----CC--ccEEEEeCCEEEEEeecCCCCce
Confidence 34557888888776543 467888887765333222 11 236788888888776 3445
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC--
Q psy3053 780 LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD-- 857 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D-- 857 (917)
|+..++............. ..+.|.++..+.+......|.+.++..+.....+.+. . -..+.|++++|+-...+
T Consensus 131 Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-~-~~~~~P~g~~iy~t~~~~~ 206 (302)
T 3s25_A 131 LYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN-C-YKPVVLDDTNVYYMDVNRD 206 (302)
T ss_dssp EEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC-E-EEEEEEETTEEEEEEGGGT
T ss_pred EEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC-c-cceeeecCCEEEEEEcCCC
Confidence 6666665433222222211 3456666633444444678999998777654433321 1 12356888888776544
Q ss_pred CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcce
Q psy3053 858 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL--VGAPKLYATEFYL 911 (917)
Q Consensus 858 G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~--DG~V~IWdl~~~l 911 (917)
..|..-+++.+. ...+. +..+ ..|+|++.+|+-++. .+.|..-++++..
T Consensus 207 ~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 207 NAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp TEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred cEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 356666666444 33333 2233 237777888776532 3456666666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.7 Score=58.80 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=135.9
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
..+|.|.|+.++..+..- .-..-+.-.+|..+.+|.-+ ..++.|+|+++. ..........+|.--.|-
T Consensus 47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k--------~klks~~~~e~VvfWkWi 114 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWI 114 (1630)
T ss_pred CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHh--------hhhcccccCCCceEEEec
Confidence 346888888876543211 11122334577777666654 789999999775 222222334556666665
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeEEecCCC----CCCeEEEEEecCCCEEEEEe-------CCCeEEEEECCCCeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI----NASVNGVLFSEDGCRVLSCG-------NNCMLNVYDLTTGMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h----~~~V~~v~fspdg~~L~s~s-------~Dg~I~iwDl~tg~~i 791 (917)
.+.. |+..+ +..|+.|++........+...| +..|..-..+++.++++..| -.|.+.+|+.+.+...
T Consensus 115 s~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ 192 (1630)
T 1xi4_A 115 SLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 192 (1630)
T ss_pred CCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch
Confidence 5444 33333 3479999997533222221122 45677778888999888655 3478888888655332
Q ss_pred EEeecC--------------CceEEEEEeCCCEEEEEeCCCeEEEEECCCC---EE------EEEEec---CCCceEE--
Q psy3053 792 CNKVFE--------------EKLLCLSWAGEEKVILGGALGMVYLVDLIQV---QL------LKQVRA---HKDAVLS-- 843 (917)
Q Consensus 792 ~~~~~~--------------~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---~~------i~~l~~---h~~~V~s-- 843 (917)
....|. ..+.|++.... ..|.+++.++... .+ +...-. ..+-..+
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~-------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecC-------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 111111 12333333211 1268888887442 11 100100 1111223
Q ss_pred EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 844 LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 844 is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+++.-..+..-+.-|.|.++|+.||.++..-+-...+|-..+-+....-++.....|.|.--.++
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 35566678888899999999999999876655445555544444433334444456655544443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.20 E-value=2.3 Score=44.91 Aligned_cols=221 Identities=10% Similarity=-0.001 Sum_probs=111.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
.|..|+..... .++. . ||.|..|-....-++.........|..++...+. .++. . ||.|+.|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 45566554432 2222 4 8888888765433222111223356666544332 3333 4 8999999765422111111
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
.-...|..++...+ ..+.-. ||.|..|-......... .......|..++.... ..++-. ||.++.|-
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-------~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-------PAEAQSGVTALDGGVY--TALAVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-------CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-------CccCCCCeEEEEcccC--EEEEEE-CCEEEEec
Confidence 11346777777653 334445 99999997654321111 1112345666665433 233334 79999997
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCceEEEEEeCCCEEEEEeCCCeE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFEEKLLCLSWAGEEKVILGGALGMV 820 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I 820 (917)
......+. ........|..++...+. .++- .||.+..|-.... +.-........+..++......++.. +|.|
T Consensus 166 ~n~~gqlg-~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v 239 (282)
T 3qhy_B 166 DNYFGQTT-VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKV 239 (282)
T ss_dssp CCTTSTTS-CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEE
T ss_pred CCCCCCCC-CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEE
Confidence 65422211 111123456666655433 2223 5888998865432 11111112234566665555344444 8888
Q ss_pred EEEECCC
Q psy3053 821 YLVDLIQ 827 (917)
Q Consensus 821 ~vwdl~~ 827 (917)
+.|-...
T Consensus 240 ~~wG~n~ 246 (282)
T 3qhy_B 240 IAWGSSR 246 (282)
T ss_dssp EEESTTC
T ss_pred EEecCCC
Confidence 8886544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.97 E-value=1.1 Score=57.02 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=125.6
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC-eeeEEeccC--
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG-RIVTELAGH-- 663 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg-~~i~~l~~H-- 663 (917)
..+|..+.+|.-+ ..++.|+|+++...+++..... +|.-=.|..+. .|+..+ +..|+-|++... .+++.+..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3456666555443 7889999999988887776654 34444454443 333332 567999999743 344444444
Q ss_pred --CCceeEEEecCCCCEEEEEE-------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe--C-CCCEEEEE
Q psy3053 664 --EDAISCVAWDEKRKRLISGS-------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS--K-DNNQLAVG 731 (917)
Q Consensus 664 --~~~Vt~l~~spd~~~L~Sgs-------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p-dg~~Lasg 731 (917)
...|..-..+++.++++..| -.|.+.+|.++.+.+ ....+|.+....+... + ....++.+
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--------Q~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--------QPIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--------hhhhHhHhhhheeccCCCCCCceEEEEE
Confidence 34566677788888776443 357888998876521 1112222222111111 0 11122222
Q ss_pred EC---CCeEEEEECCCC---eee------EEecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 732 TE---AGELIIWSLENH---LMT------QQLSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 732 s~---dG~I~iwDl~~~---~~~------~~l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
.. .|.++|.++... ... ....+ ...+-..++..++.-..+...+.-|.++++|+.+|..+......
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 11 367888887543 110 00110 12334456777887778888889999999999999887554432
Q ss_pred C-ceEEEEEe-CCCEEEEEeCCCeEEEEECCC
Q psy3053 798 E-KLLCLSWA-GEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 798 ~-~i~~l~~s-~~~~lv~gs~dG~I~vwdl~~ 827 (917)
+ .|...+.+ +.+-+++....|.|.-..+..
T Consensus 300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 2 22222222 222334444455444444433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.95 Score=45.93 Aligned_cols=148 Identities=8% Similarity=-0.072 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccc--------eEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMT--------LSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~--------V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
.++.++|+|+|.+.+. .+|.+.-.+..+.... ........ ..++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5679999999985555 6776555444332111 11111112 367889999988877 669887776533
Q ss_pred Cee-------eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 654 GRI-------VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 654 g~~-------i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
... ...-.+--..+.+|.+.|+|.+-+.. |+.+.-+...+.....-...........-..-+-+.|.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 111 11111122568999999999877665 777543322211100000000000112222344466777777
Q ss_pred EEEEEECCCeEE
Q psy3053 727 QLAVGTEAGELI 738 (917)
Q Consensus 727 ~Lasgs~dG~I~ 738 (917)
+.++. +|.++
T Consensus 195 l~~v~--~g~~Y 204 (236)
T 1tl2_A 195 LFGVQ--GGKFY 204 (236)
T ss_dssp EEEEE--TTEEE
T ss_pred EEEEe--CCeEE
Confidence 66665 66443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=1.8 Score=51.96 Aligned_cols=199 Identities=10% Similarity=0.028 Sum_probs=102.6
Q ss_pred CCCcEEEEEecC----CceEEEeccCCceeeee-e-----cccc-ceEEEEEeC-CCCEEEEEecc------cEEEEEEe
Q psy3053 590 GEGISVASVGRD----AMLKIHSLKTGRQERSA-V-----LSSM-TLSSLCILP-DNCTMLVGCWD------SCVVIYDV 651 (917)
Q Consensus 590 pdg~~Lasgs~D----g~I~IWd~~t~~~~~~~-~-----~~~~-~V~sl~~sp-d~~~Lasgs~D------g~I~Iwdl 651 (917)
.++..++.||.+ ..+.+||..+++-.... . .... .-.+++..+ +++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456667777653 35778888776533222 1 1111 112333443 77888888754 35788888
Q ss_pred ccCeeeEE--eccCCCceeEEEecCCCCEEEEEECCC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CC
Q psy3053 652 ECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWDC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NN 726 (917)
Q Consensus 652 ~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 726 (917)
.+.+-... +......- +++...++..++.|+.++ .+.+||..+..-...... ...........++.+..+ +.
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC--CCCCCcccceeEEEEeCCCCE
Confidence 87643322 21111111 223323778888888665 688999877521000000 000111122233555655 66
Q ss_pred EEEEEEC--C-----CeEEEEECCCCee-----eEEecC--CCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEE
Q psy3053 727 QLAVGTE--A-----GELIIWSLENHLM-----TQQLSD--DINASVNGVLFSEDGCRVLSCGNN--------CMLNVYD 784 (917)
Q Consensus 727 ~Lasgs~--d-----G~I~iwDl~~~~~-----~~~l~~--~h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwD 784 (917)
+++.|+. + ..+.+||+.+..- ...+.. .....-.+++...+++.++.||.+ ..+.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 7777765 2 4588999887761 122211 111111233333336677777642 3577888
Q ss_pred CCCCeEE
Q psy3053 785 LTTGMQV 791 (917)
Q Consensus 785 l~tg~~i 791 (917)
+.+++-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 8776543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.19 E-value=1.9 Score=45.43 Aligned_cols=221 Identities=12% Similarity=0.037 Sum_probs=117.1
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
..|..++.... ..+.-. ||.|..|-.........+ ......|..++..... .++. . ||.|+.|-...
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p-------~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP-------AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC-------GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC-------ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCC
Confidence 35777776543 333335 999999986544211111 1122356666665432 2333 4 89999997654
Q ss_pred CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEE
Q psy3053 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLV 823 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vw 823 (917)
.-.+.. .......|..++...+ +.+.-. ||.|+.|-... ++.-........+..++......++ -. +|.|+.|
T Consensus 91 ~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~w 164 (282)
T 3qhy_B 91 DGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAW 164 (282)
T ss_dssp TSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEE
T ss_pred CCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEe
Confidence 322111 1112346777776654 344444 89999997543 2211111223456666665553333 34 7999999
Q ss_pred ECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3053 824 DLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPK 903 (917)
Q Consensus 824 dl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~ 903 (917)
-......+..-..-...|..++......++- .||.|..|-......+..-......|..++..... .++.. ||.|.
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~ 240 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVI 240 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEE
T ss_pred cCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEE
Confidence 7654211111111134677776655554444 69999999654321111111112356777655443 33333 89999
Q ss_pred EEecC
Q psy3053 904 LYATE 908 (917)
Q Consensus 904 IWdl~ 908 (917)
.|--+
T Consensus 241 ~wG~n 245 (282)
T 3qhy_B 241 AWGSS 245 (282)
T ss_dssp EESTT
T ss_pred EecCC
Confidence 98665
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=5.2 Score=47.96 Aligned_cols=194 Identities=10% Similarity=0.106 Sum_probs=103.1
Q ss_pred CCCCEEEEEecc----cEEEEEEeccCeeeEEe-c------cCCCceeEEEecC-CCCEEEEEECCC------eEEEEeC
Q psy3053 632 PDNCTMLVGCWD----SCVVIYDVECGRIVTEL-A------GHEDAISCVAWDE-KRKRLISGSWDC------TVRVWNT 693 (917)
Q Consensus 632 pd~~~Lasgs~D----g~I~Iwdl~tg~~i~~l-~------~H~~~Vt~l~~sp-d~~~L~Sgs~Dg------tI~vWdl 693 (917)
.++..++.|+.+ +.+.+||..+++-...- . .....-.+++..+ ++..++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666677643 45788888876543322 1 1111112333333 667777777543 4778887
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEec----CCCCCCeEEEEEecC
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLS----DDINASVNGVLFSED 767 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~----~~h~~~V~~v~fspd 767 (917)
.+.. .. ... .......-.+++...++.+++.|+.++ .+.+||..+..-...-. ........++.+..+
T Consensus 476 ~t~~--W~---~~~-~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 476 KTRE--WS---MIK-SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTE--EE---ECC-CCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCc--EE---ECC-CCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7642 00 000 001111112233324788888887665 68999998875433221 011222233555655
Q ss_pred -CCEEEEEeC--C-----CeEEEEECCCCe------EEEEee---cC-CceEEEEEeCCCEEEEEeC--------CCeEE
Q psy3053 768 -GCRVLSCGN--N-----CMLNVYDLTTGM------QVCNKV---FE-EKLLCLSWAGEEKVILGGA--------LGMVY 821 (917)
Q Consensus 768 -g~~L~s~s~--D-----g~I~iwDl~tg~------~i~~~~---~~-~~i~~l~~s~~~~lv~gs~--------dG~I~ 821 (917)
++.++.||. + +.+.+||+.+.. -..... .. ....++....+..++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 667777765 2 458899998876 221111 11 1123333442445666764 35699
Q ss_pred EEECCCCEEE
Q psy3053 822 LVDLIQVQLL 831 (917)
Q Consensus 822 vwdl~~~~~i 831 (917)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.67 E-value=13 Score=40.26 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee--e----eccccceEEEEEeCC---CCEEEEE---ecccEEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS--A----VLSSMTLSSLCILPD---NCTMLVG---CWDSCVV 647 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~--~----~~~~~~V~sl~~spd---~~~Lasg---s~Dg~I~ 647 (917)
-..-++|+|.|||..+++--..|.|++++..+++.... + .........++++|+ +..|.+. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34567999999998766654489999988665543211 1 123456788999995 3444432 2345566
Q ss_pred EEEeccC----------eee-EEec-cCCCceeEEEecCCCCEEEEEEC-------------CCeEEEEeCCCCCCCccC
Q psy3053 648 IYDVECG----------RIV-TELA-GHEDAISCVAWDEKRKRLISGSW-------------DCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 648 Iwdl~tg----------~~i-~~l~-~H~~~Vt~l~~spd~~~L~Sgs~-------------DgtI~vWdl~~~~~~~~~ 702 (917)
-|....+ +.+ ..+. +....-..|+|.|||.+.++.+. .|.|.-.+.........+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665541 111 1222 11123467999999987777542 244444443322100001
Q ss_pred C-cceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 703 S-KSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 703 ~-~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
. .......++. ....++|+|+|.+.++
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 0 0112223443 3568899998775554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=90.83 E-value=7 Score=44.19 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=61.1
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeee--EEecc------CCCceeEEEecCC---CCEEEEEEC---------
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV--TELAG------HEDAISCVAWDEK---RKRLISGSW--------- 684 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i--~~l~~------H~~~Vt~l~~spd---~~~L~Sgs~--------- 684 (917)
-..++|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|..+..
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 468999999987776544457888876555432 22221 2456779999995 455544332
Q ss_pred ----CCeEEEEeCCCCCCCccCCcceeeec--cCCCceEEEEEeCCCCEEEEEEC
Q psy3053 685 ----DCTVRVWNTGASWSHMKPSKSLVSQL--DLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 685 ----DgtI~vWdl~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
...|.-++.............+.... ........++|.|+|.+.++.+.
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 13455555433211111111122111 12235789999999987776543
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.85 E-value=26 Score=38.35 Aligned_cols=230 Identities=14% Similarity=0.070 Sum_probs=126.3
Q ss_pred CCEEEEEecccEEEEEEeccC-e----------eeEEecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-
Q psy3053 634 NCTMLVGCWDSCVVIYDVECG-R----------IVTELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM- 700 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg-~----------~i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~- 700 (917)
....+.-..||.|+.|-.... + ....+.. ....+..++.+......+..+.||.|..|-.......-
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 344555567888888864321 1 1111221 22345556666666777777899999999754321100
Q ss_pred ---cCCcceeeecc-CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC-----------eeeEEecCCCCCCeEEEEEe
Q psy3053 701 ---KPSKSLVSQLD-LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH-----------LMTQQLSDDINASVNGVLFS 765 (917)
Q Consensus 701 ---~~~~~~~~~~~-h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~-----------~~~~~l~~~h~~~V~~v~fs 765 (917)
........... ....|..++. ...+.++-+.+|.|+.|-.... .....+.......|..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 00000111111 1224555554 3456666778999999965321 11222221233456677665
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC----------eEEE-Eee-c-CCceEEEEEeCCCEEEEEeCCCeEEEEECCCC----
Q psy3053 766 EDGCRVLSCGNNCMLNVYDLTTG----------MQVC-NKV-F-EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---- 828 (917)
Q Consensus 766 pdg~~L~s~s~Dg~I~iwDl~tg----------~~i~-~~~-~-~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---- 828 (917)
......++...||.|..|-.... .... ... . ...+..++.... ..++-+.+|.|+.|-....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCC
Confidence 43456677778999999964321 1111 111 1 224666666555 6666688999999965321
Q ss_pred -------EEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECc
Q psy3053 829 -------QLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 829 -------~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.....+.. ....|..++......++-..||.|+.|-..
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCC
Confidence 11122221 234677887777777777899999999654
|
| >1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A | Back alignment and structure |
|---|
Probab=89.07 E-value=2.5 Score=49.44 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=66.7
Q ss_pred ccceEEEE-EEEEEeee-eEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccc----cCcceEEEEEEecCC
Q psy3053 155 YEKVILET-FGNKITPL-VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRF----LLQQVGIEIYFKDLE 228 (917)
Q Consensus 155 ~~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~----~~~~~~~e~~~~~~~ 228 (917)
.|.+..+. .+..+.|. ....|+|+||+-+|+|.+.... +...+.|++..|..|.+..- .-...+|+|.++|-
T Consensus 84 GE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~-~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf- 161 (657)
T 1lw3_A 84 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI- 161 (657)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-SCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-
T ss_pred CeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCC-cceEEEecccceEEEEecCCCcccCCCCceEEEEecCC-
Confidence 45555443 23345554 5688999999999999986432 34567889999999887421 11235899999997
Q ss_pred CceeEEEecCCh-hhHHHHHHHHhC
Q psy3053 229 PVKYLYLTLKTQ-GARDTLYNALLD 252 (917)
Q Consensus 229 ~~~~~~~~f~~~-~~~~~~~~~~~~ 252 (917)
+.+-|.|... .++..+++.|..
T Consensus 162 --R~~~f~f~~~~~~~~~v~~~L~~ 184 (657)
T 1lw3_A 162 --RNLRFAHKPEGRTRRSIFENLMK 184 (657)
T ss_dssp --EEEEEECCGGGCCHHHHHHHHHH
T ss_pred --cEEEEEeCCccchHHHHHHHHHH
Confidence 7888999865 347788888864
|
| >1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* | Back alignment and structure |
|---|
Probab=87.67 E-value=3.6 Score=47.12 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=65.2
Q ss_pred ccceEEEE-EEEEEeee-eEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccc----cCcceEEEEEEecCC
Q psy3053 155 YEKVILET-FGNKITPL-VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRF----LLQQVGIEIYFKDLE 228 (917)
Q Consensus 155 ~~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~----~~~~~~~e~~~~~~~ 228 (917)
.|.+..+. .+..+.|. ....|+|.||+-+|+|.+.... +...+.|++..|..|.|..- .-...+|+|.++|-
T Consensus 12 GE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~-~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CKDf- 89 (528)
T 1zsq_A 12 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI- 89 (528)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-SCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-
T ss_pred CCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCC-ccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEccCC-
Confidence 45554442 12233332 4578999999999999986532 34567899999988887421 11245899999997
Q ss_pred CceeEEEecCCh-hhHHHHHHHHhC
Q psy3053 229 PVKYLYLTLKTQ-GARDTLYNALLD 252 (917)
Q Consensus 229 ~~~~~~~~f~~~-~~~~~~~~~~~~ 252 (917)
+.+-|.|... .++.++++.|..
T Consensus 90 --r~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 90 --RNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp --EEEEEECCGGGCCHHHHHHHHHH
T ss_pred --eEEEEEecCchHHHHHHHHHHHH
Confidence 7888899865 347789888864
|
| >1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B | Back alignment and structure |
|---|
Probab=86.62 E-value=3.2 Score=36.75 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=52.1
Q ss_pred eceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCCh----hhHHHHHH
Q psy3053 173 NPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQ----GARDTLYN 248 (917)
Q Consensus 173 ~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~----~~~~~~~~ 248 (917)
.+|.|.+++++|.+-|..+ ..+.+.+++.+|+...---=.=-.+-|.||..++ ..+-|.|.++ .+||.|=+
T Consensus 20 ~dGtL~l~~d~i~W~p~~~--~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~---~~~~F~Ftn~~~a~~erd~VKd 94 (108)
T 1pfj_A 20 QDGALYLMAERIAWAPEGK--DRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG---DTTNFHFSNESTAVKERDAVKD 94 (108)
T ss_dssp CBCEEEEETTEEEEECSSS--SSCSEEEETTTCCCEEECCSSSSSCEEEEECSSS---CEEEEECCCSSCTTHHHHHHHH
T ss_pred CCceEEEEcceEEEccCCC--CCceEEEehhhhhcceeCCCCCccEEEEEEEeCC---CceEEEEcCcHHHHHHHHHHHH
Confidence 4699999999999999554 4567788999998732222222335689999986 6778899986 46776644
Q ss_pred HH
Q psy3053 249 AL 250 (917)
Q Consensus 249 ~~ 250 (917)
.|
T Consensus 95 ~L 96 (108)
T 1pfj_A 95 LL 96 (108)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=85.91 E-value=56 Score=37.67 Aligned_cols=253 Identities=11% Similarity=0.038 Sum_probs=139.0
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccC-------------------------CCce--eEEEec---CCCCEEEEEE-C
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGH-------------------------EDAI--SCVAWD---EKRKRLISGS-W 684 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H-------------------------~~~V--t~l~~s---pd~~~L~Sgs-~ 684 (917)
.+.+|+..|.|+|+-+.+++.+..+.-. .+.. ..+++. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4678889999999999999887766410 0111 123332 1567777765 3
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe--CCCCEEEEEEC-------CCeE------------EEEECC
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS--KDNNQLAVGTE-------AGEL------------IIWSLE 743 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~Lasgs~-------dG~I------------~iwDl~ 743 (917)
...|...++....+ ...........+.++.+- |+..++++++. ||.. ...|..
T Consensus 152 n~RvAri~l~~~~~------d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 152 NSRVARIRLDIMKC------DKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTEEEEEETTTTEE------EEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETT
T ss_pred CcceEEEECCcEee------ceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCC
Confidence 45677777765411 111234455667777775 56677777664 2221 112333
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC----------------------------------------eEEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC----------------------------------------MLNVY 783 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg----------------------------------------~I~iw 783 (917)
+.+...++. -.+....+...++|++.++.+.+. .+.+.
T Consensus 226 tm~v~~Qv~--v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~Vi 303 (638)
T 3sbq_A 226 TMEMAFQVI--VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVL 303 (638)
T ss_dssp TCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred ccEEEEEEE--cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEE
Confidence 333333322 122333455566777776665321 23344
Q ss_pred ECCC----C-eEEEEeecCCceEEEEEeCCCEEEEE--eCCCeEEEEECCCC------E-------EEEEEecCCCce-E
Q psy3053 784 DLTT----G-MQVCNKVFEEKLLCLSWAGEEKVILG--GALGMVYLVDLIQV------Q-------LLKQVRAHKDAV-L 842 (917)
Q Consensus 784 Dl~t----g-~~i~~~~~~~~i~~l~~s~~~~lv~g--s~dG~I~vwdl~~~------~-------~i~~l~~h~~~V-~ 842 (917)
|.+. + ..+..+..+.....+..+|+|..+++ -.+.++.++|.... + .....+...++. +
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt 383 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHT 383 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEE
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEE
Confidence 4433 1 12222333444556777888865544 44678999998742 1 133333222222 2
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcCC----------eEEEEecCCCCCEEEEEE------cCCCCEEEEEe
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVECG----------RIVTELAGHEDAISCVAW------DEKRKRLISGN 897 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~tg----------~~l~~l~~h~~~V~slaf------Spdg~~LaSgs 897 (917)
....+|....+---|..|.-|++... ..+..+.-|-.+- .+.- .|||++|++..
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred EECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 33456644444557999999998653 4566666664432 2222 57899999875
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.80 E-value=43 Score=35.41 Aligned_cols=193 Identities=11% Similarity=0.111 Sum_probs=106.5
Q ss_pred CCcEEEEEecCCceEEEeccCCceee-------eeec-cccceEEEEEeCCCCEEEEEecccEEEEEEecc---------
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQER-------SAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC--------- 653 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~-------~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t--------- 653 (917)
+...+++.+.+|.|+--.+.+-+..+ .+.. ....+..+........|+..+..|.++-.....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 44567888889988766654422211 1111 223344444455566777777888766665432
Q ss_pred CeeeE---EeccCCCceeEEEec---CCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 654 GRIVT---ELAGHEDAISCVAWD---EKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 654 g~~i~---~l~~H~~~Vt~l~~s---pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
|..+. .+. ..+.|.++... .++.+++.++.+|.++--.+..-............... .+.+..+....+...
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~-~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD-GDELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT-TCCEEEEEEECTTCE
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC-CCEEEEEEEeCCCCE
Confidence 22211 122 23445555432 34568999999999999976432111111111111222 356666666556677
Q ss_pred EEEEECCCeEEEEECCCCe-------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 728 LAVGTEAGELIIWSLENHL-------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~-------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
++..+.+|.+..++...-. -+..+.-.....|.++...+++..+++.+..|..+-.++
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 8888999998888764311 112222123456766665555667888888888887766
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=84.68 E-value=57 Score=36.71 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=62.9
Q ss_pred CceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeec------cCCCceEEEEEeCC----CCEEEEEEC
Q psy3053 665 DAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL------DLDNRIKCLAISKD----NNQLAVGTE 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~------~h~~~V~~l~~spd----g~~Lasgs~ 733 (917)
..-+.|+|.|++. .|+.+...|.|++++...... ......+.... ........|+++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3567899999986 566667899999997543210 00000000001 12456789999996 444444332
Q ss_pred C------------CeEEEEECCC----------CeeeEEec-CCCCCCeEEEEEecCCCEEEEEeCC
Q psy3053 734 A------------GELIIWSLEN----------HLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 734 d------------G~I~iwDl~~----------~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~D 777 (917)
+ ..|.-|.+.. .+.+..+. .........|+|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1454565542 12233322 1223456789999999887777654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.17 E-value=53 Score=35.13 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=96.8
Q ss_pred cceEEEEEeC---CCcEEEEEecCCceEEEeccCCceee-----eeec-cccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 581 EAITAVAICG---EGISVASVGRDAMLKIHSLKTGRQER-----SAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 581 ~~Vtsv~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~~-----~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..|.++..-+ +...++.++.+|.++--.+..-...+ .+.. ....+..+........++..+..|.+..+..
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 4455544333 46789999999999988876532211 1111 2344555555556677888889999888877
Q ss_pred c--c----C-----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee--eeccCCCceEE
Q psy3053 652 E--C----G-----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV--SQLDLDNRIKC 718 (917)
Q Consensus 652 ~--t----g-----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~--~~~~h~~~V~~ 718 (917)
. . + .....+. ..+.|.++...+++..++.++..|.++.-.+..-....+...... ......+.+..
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~ 253 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVG 253 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEE
T ss_pred cccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEE
Confidence 6 2 1 1111222 245566666666667899999999999887654321111111111 11121344555
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
+....+...++..+.+|.+.-++...
T Consensus 254 ~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 254 ALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEeCCCccEEEEcCCCeEEEEehhh
Confidence 55555556777788888888887653
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.40 E-value=50 Score=34.33 Aligned_cols=161 Identities=11% Similarity=-0.002 Sum_probs=94.4
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEE---EeccCCceeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEEEeccC-
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKI---HSLKTGRQERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIYDVECG- 654 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~I---Wd~~t~~~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iwdl~tg- 654 (917)
+.+.++........|+..+.+|.+.- |++..+.... +...+..|.++.. + ++..++..+.+|.++-..+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 45555555555556666667776543 3433322111 2223445655544 4 4678999999999999987652
Q ss_pred -----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC-CcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 655 -----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP-SKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 655 -----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
.....+.. .+.+..+........++..+..|.+..+....-....+. ..........+..|..+...+++..+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 22222332 345555555556668888899999888875432111110 00111122345667777666667788
Q ss_pred EEEECCCeEEEEECCC
Q psy3053 729 AVGTEAGELIIWSLEN 744 (917)
Q Consensus 729 asgs~dG~I~iwDl~~ 744 (917)
+..+..|.++...+..
T Consensus 181 l~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 181 LVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEETTSCEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHH
Confidence 8999999998887643
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=81.59 E-value=66 Score=35.18 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=96.5
Q ss_pred ceEEEeccCC--ceeeeeecc------ccceEEEEEe---CC----CCEEEEE-ecccEEEEEEeccCeeeEEec-----
Q psy3053 603 MLKIHSLKTG--RQERSAVLS------SMTLSSLCIL---PD----NCTMLVG-CWDSCVVIYDVECGRIVTELA----- 661 (917)
Q Consensus 603 ~I~IWd~~t~--~~~~~~~~~------~~~V~sl~~s---pd----~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~----- 661 (917)
.|.+||+.++ +.++++... ...+..+++. |+ +.++..+ +..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778999998 888776653 3346777777 22 3343333 347789999999887655442
Q ss_pred ---------cC----CCceeEEEecCC----CCEEEEEECCCeEEEEeCCCCCC---CccCCcceeeeccCCCceEEEEE
Q psy3053 662 ---------GH----EDAISCVAWDEK----RKRLISGSWDCTVRVWNTGASWS---HMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 662 ---------~H----~~~Vt~l~~spd----~~~L~Sgs~DgtI~vWdl~~~~~---~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
|. ...|..|+.+|+ ++.|.-....+. ++|.+.+... ............+....-..++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 246788888887 677776655442 3444332110 00111111111111233445667
Q ss_pred e-CCCCEEEEEECCCeEEEEECCC-C----eeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 722 S-KDNNQLAVGTEAGELIIWSLEN-H----LMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 722 s-pdg~~Lasgs~dG~I~iwDl~~-~----~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
+ .+|.++++--....|..|+..+ . ..........-..+..+.+.++|.+.+.+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5 5677777777788899999876 1 11222221223356677776666544444
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.43 E-value=58 Score=33.81 Aligned_cols=161 Identities=13% Similarity=0.052 Sum_probs=93.3
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEE---EeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIY---DVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iw---dl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
..+..+........|+.-+.+|.++-- ++..++....+. ....|.++.... +...++.++.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~- 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE- 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence 344454444445566666667765543 333222111132 344565554422 46799999999999999875432
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC-------eeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH-------LMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~-------~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
... ..........++.+..+........++..+..|.+..+....- .-+..+.-.....|.++...+++..+
T Consensus 102 ~~~-~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKA-QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCS-TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhc-CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 111 1111112234556666666666678888999999988875321 11111221234567776666667788
Q ss_pred EEEeCCCeEEEEECC
Q psy3053 772 LSCGNNCMLNVYDLT 786 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~ 786 (917)
+..+..|.++...+.
T Consensus 181 l~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 181 LVITAKGRVKKISHE 195 (276)
T ss_dssp EEEETTSCEEEEEGG
T ss_pred EEEeCCCcEEEeEHH
Confidence 888889888887753
|
| >2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.02 E-value=5.3 Score=45.55 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred eeEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHH
Q psy3053 170 LVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNA 249 (917)
Q Consensus 170 ~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 249 (917)
.....|+|.||+-+|+|.+.. ..-.-+++..|..|-|+.-.-+...|+|.++|- +.+=|.|....++.++++.
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~----~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDf---r~~~f~f~~~~~~~~v~~s 94 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSH----QKETWILHHHIASVEKLALTTSGCPLVIQCKNF---RTVHFIVPRERDCHDIYNS 94 (512)
T ss_dssp --CCEEEEEECSSEEEEEESS----SCEEEEEGGGEEEEEECCCBTTBEEEEEEETTS---CEEEEEESCHHHHHHHHHH
T ss_pred CCceeEEEEEECCEEEEeCCC----CCceEecccceeEEEEecCCCCCceEEEEecCC---cEEEEEeCChHHHHHHHHH
Confidence 345789999999999999832 223457888888887764333446799999997 7788899988888889988
Q ss_pred HhC
Q psy3053 250 LLD 252 (917)
Q Consensus 250 ~~~ 252 (917)
|..
T Consensus 95 L~~ 97 (512)
T 2yf0_A 95 LLQ 97 (512)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 917 | ||||
| d1t77a1 | 304 | a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons | 1e-130 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-25 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-20 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-17 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d1t77a2 | 110 | b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsi | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-13 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 |
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Score = 392 bits (1007), Expect = e-130
Identities = 154/282 (54%), Positives = 185/282 (65%), Gaps = 8/282 (2%)
Query: 266 MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLS 325
MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPWVI+NY + LDL+ N+RDLS
Sbjct: 26 MTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLS 85
Query: 326 KPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYLVRK--FPQYMLCLQN 380
KPIGALNP R ERY PKF YG+HYST FVL +L+R F Y L LQ
Sbjct: 86 KPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQG 145
Query: 381 GRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTK 440
G+FDH DR F+SI WRN + SD KEL+PEFY + N + G DGT
Sbjct: 146 GKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLP---EMFVNFNNYNLGVMDDGTV 202
Query: 441 VGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYL 500
V V+LPPWA+ E FV R ALES+ VS QLH WIDLIFGYKQ+G EA +A N+FYYL
Sbjct: 203 VSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYL 262
Query: 501 CYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
YEG+VNL+ + D R A+E QI FGQ P Q+ PHP R
Sbjct: 263 TYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 304
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (260), Expect = 4e-25
Identities = 42/328 (12%), Positives = 111/328 (33%), Gaps = 30/328 (9%)
Query: 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI 630
+ H+ +T V + S DA +K+ +TG ER+ + ++ +
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
+ D + ++D + + + GH+ +S V+ ++S S D T+++
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750
W ++ + + ++ + ++D +A + + +W + +
Sbjct: 128 W-------EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180
Query: 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810
L + V + ++ + G + +
Sbjct: 181 LREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS----------------- 222
Query: 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECG 868
G + + D+ L + H + V + F +L D + ++D +
Sbjct: 223 ---GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 279
Query: 869 RIVTELAGHEDAISCVAWDEKRKRLISG 896
R + L HE ++ + + + +++G
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTG 307
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.0 bits (206), Expect = 4e-18
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 6/153 (3%)
Query: 539 HPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASV 598
T ++ L +H ++ +S + + S G + S
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESS------YSSISEATGSETKKSGKPGPFLLSG 223
Query: 599 GRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658
RD +K+ + TG + V + + +L D + ++D + R +
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283
Query: 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
L HE ++ + + + +++GS D TV+VW
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.3 bits (204), Expect = 8e-18
Identities = 46/280 (16%), Positives = 100/280 (35%), Gaps = 28/280 (10%)
Query: 525 MEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAIT 584
E G + + + ++ S ++ +D++ D E + H H ++
Sbjct: 46 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105
Query: 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS 644
+V+I G + S RD +K+ ++TG ++ + + D + D
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165
Query: 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKR--------------------KRLISGSW 684
V ++ V EL H + C++W + L+SGS
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225
Query: 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
D T+++W+ S +LV DN ++ + + + L +W +N
Sbjct: 226 DKTIKMWD----VSTGMCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278
Query: 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784
+ L+ V + F + V++ + + V++
Sbjct: 279 KRCMKTLNAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.7 bits (200), Expect = 3e-17
Identities = 42/275 (15%), Positives = 95/275 (34%), Gaps = 36/275 (13%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--TGASWSHMKPSKSLVSQLDLDNRIK 717
L+GH ++ V + ++S S D T++VW+ TG +K V + D+ K
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN 777
LA + I + + +V+ V +G ++S +
Sbjct: 73 LLASCSADMT----------IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122
Query: 778 CMLNVYDLTTGMQVCNKVFEEKLLCLSW--AGEEKVILGGALGMVYLVDLIQVQLLKQVR 835
+ ++++ TG V + + + + V + + + ++R
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 836 AHKDAVLSLHF----------------------DNCTMLVGCWDSCVVIYDVECGRIVTE 873
H+ V + + +L G D + ++DV G +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242
Query: 874 LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908
L GH++ + V + K ++S +++ +
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.4 bits (124), Expect = 1e-07
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 6/163 (3%)
Query: 494 DNLFYYLCYEGSVNLDMVQDWNQRHALE------VQIMEFGQIPKQIFHSPHPRRTLTSQ 547
L + +V + +V + L I + T S
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 548 SSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIH 607
+ D + D S L H + V G + S D L++
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 608 SLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650
K R ++ ++SL ++ G D V +++
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.8 bits (221), Expect = 8e-20
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 2/142 (1%)
Query: 553 HSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG 612
+ D S D H+ I A+ G + A+ DA ++ L+
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 613 RQERSAVLSSM--TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 670
++ + ++ ++S+ +L G D ++D LAGH++ +SC+
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 671 AWDEKRKRLISGSWDCTVRVWN 692
+ + +GSWD +++WN
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.0 bits (219), Expect = 1e-19
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
Query: 629 CILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTV 688
+ PD + G D+ ++DV G GHE I+ + + +GS D T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT 748
R+++ A M S ++ I ++ SK L G + +W
Sbjct: 251 RLFDLRADQELMTY-----SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 749 QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784
L+ + V+ + ++DG V + + L +++
Sbjct: 306 GVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.5 bits (202), Expect = 2e-17
Identities = 36/277 (12%), Positives = 82/277 (29%), Gaps = 11/277 (3%)
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD 685
++ D+ ++ D ++I+D V + + A+ + G D
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118
Query: 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745
++N +++ S+ L + + L ++ T
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-----CALWDIET 173
Query: 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN-KVFEEKLLCLS 804
V + + D +S + ++D+ GM E + +
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 805 WAGEEKVIL-GGALGMVYL--VDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSC 859
+ G L + Q + + S+ F +L G D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 860 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896
++D LAGH++ +SC+ + + +G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.6 bits (197), Expect = 1e-16
Identities = 42/321 (13%), Positives = 106/321 (33%), Gaps = 13/321 (4%)
Query: 552 KHSTILSDVSNSWCDKSILE--PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSL 609
LS ++N+ ++ H I A+ + + S +D L I
Sbjct: 25 CADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
Query: 610 KTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 669
T + + L S + + P + G D+ IY+++ ++ +
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729
+ +T + ++ + + + L+++ D
Sbjct: 145 YLSCCRFLD----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200
Query: 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789
G +W + + Q + + +N + F +G + ++ ++DL
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 790 QVCNKVFEEK---LLCLSWAGEEKVIL-GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH 845
++ + + +S++ +++L G + D ++ + H + V L
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 846 F--DNCTMLVGCWDSCVVIYD 864
D + G WDS + I++
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 9/236 (3%)
Query: 508 LDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDK 567
+ N ++ E + + + T D + + D
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 568 SILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSS 627
+ H + ++++ + S DA K+ ++ G ++ +++
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 628 LCILPDNCTMLVGCWDSCVVI--YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD 685
+C P+ G D+ + + + I+ V++ + + L++G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741
VW+ + L DNR+ CL ++ D +A G+ L IW+
Sbjct: 292 FNCNVWD----ALKADRAGVLAGH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.1 bits (144), Expect = 4e-10
Identities = 30/246 (12%), Positives = 64/246 (26%), Gaps = 43/246 (17%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719
L GH I + W + L+S S D + +W + + + + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW-------DSYTTNKVHAIPLRSSWVMTC 103
Query: 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779
A + N +A G I++L+ ++S ++ + ++
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 780 LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD 839
F +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSL------------------------------- 192
Query: 840 AVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV 899
D + G D+ ++DV G GHE I+ + + +G+
Sbjct: 193 -----APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 900 GAPKLY 905
+L+
Sbjct: 248 ATCRLF 253
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.9 bits (216), Expect = 6e-19
Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 20/214 (9%)
Query: 497 FYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTI 556
V+ W+ R + + SP + + + S +
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL--DRAVR 230
Query: 557 LSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ-- 614
+ D + + + HK+++ +V +G SV S D +K+ +L+
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 615 ----------ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 664
E + + + S+ ++ +L G D V+ +D + G + L GH
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 350
Query: 665 DAISCVA------WDEKRKRLISGSWDCTVRVWN 692
+++ VA + +GS DC R+W
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 6e-17
Identities = 73/383 (19%), Positives = 136/383 (35%), Gaps = 58/383 (15%)
Query: 531 PKQIFH-SPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAIC 589
P F + +L K + + N + I LH H + V
Sbjct: 15 PIPPFLLDLDSQSVP---DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 71
Query: 590 GEGISVASVGRDAMLKIHSLKTGRQER------------------SAVLSSMTLSSLCIL 631
+G +A+ G + +++ + G S+ S + + S+C
Sbjct: 72 NDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
PD + G D + I+D+E +IV L GHE I + + +L+SGS D TVR+W
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL 751
+ + S D D +A G+ + +W E + ++L
Sbjct: 191 DLRTGQCSLTLSIE-------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 752 SDDIN------ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-------------MQVC 792
+ SV V+F+ DG V+S + + +++L +V
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 793 NKVFEEKLLCLSWAGEEKVIL-GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNC-- 849
++ +L ++ ++ IL G V D L ++ H+++V+S+ N
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363
Query: 850 ------TMLVGCWDSCVVIYDVE 866
G D I+ +
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.5 bits (150), Expect = 9e-11
Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 34/277 (12%)
Query: 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNT-----------GASWSHMKPSKSLVSQL 710
H + CV + + L +G + T +V+ ++ + + + S
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 711 DLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR 770
D I+ + S D LA G E + IW +EN + L + F
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL-GGALGMVYLVDLIQVQ 829
V G+ + T + + + G+ K I G V + D
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 830 L-------LKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAG---- 876
L + HKD+V S+ F D +++ G D V +++++ ++
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 877 --------HEDAISCVAWDEKRKRLISGNLVGAPKLY 905
H+D + VA + + ++SG+ +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.8 bits (143), Expect = 7e-10
Identities = 50/279 (17%), Positives = 94/279 (33%), Gaps = 35/279 (12%)
Query: 658 TELAGHEDAIS--CVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714
+ A H I + D + + + ++N + L LD +
Sbjct: 7 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP---REIDVELHKSLDHTS 63
Query: 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA----------------- 757
+ C+ S D LA G ++ + + + +LSDD A
Sbjct: 64 VVCCVKFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGAL 817
+ V FS DG + + + ++ ++D+ V E+ + L
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 818 GM--VYLVDLIQVQLLKQVRAHKDAVLSLHFDNC--TMLVGCWDSCVVIYDVECGRIVTE 873
G V + DL Q + + G D V ++D E G +V
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 874 L-------AGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
L GH+D++ V + + ++SG+L + KL+
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 18/163 (11%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 501 CYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFH---SPHPRRTLT--SQSSLLKHST 555
+ +V + + L+ + ++ + + ++ S+ +
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283
Query: 556 ILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ- 614
++ + + HK+ + +VA + S +D + K+G
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 615 -----ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652
R++V+S + + P+ G D I+ +
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (198), Expect = 4e-17
Identities = 47/296 (15%), Positives = 108/296 (36%), Gaps = 24/296 (8%)
Query: 612 GRQE--RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 669
GR R S + C+ D+ ++ G D+ + I+D L GH ++ C
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729
+ +DE+ S V NTG + + + L + +N +
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HCEAVLHLRFNNGMMV 109
Query: 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789
++ + +W + + + + D ++S + + V++ +T
Sbjct: 110 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE 169
Query: 790 QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNC 849
V ++ + + V+ G + + L D+ L+ + H++ V + FDN
Sbjct: 170 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 229
Query: 850 TMLVGCWDSCVVIYDVECG---------RIVTELAGHEDAISCVAWDEKRKRLISG 896
++ G +D + ++D+ + L H + + +DE +++S
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSS 283
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 4e-13
Identities = 54/308 (17%), Positives = 117/308 (37%), Gaps = 26/308 (8%)
Query: 567 KSILEPLHFCHS-HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTL 625
+ L+ +H C S + + + + + S RD +KI T +R +L+ T
Sbjct: 2 RHSLQRIH-CRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKR--ILTGHTG 56
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD 685
S LC+ D ++ G DS V ++DV G ++ L H +A+ + ++
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--------MM 108
Query: 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745
T + A W P+ + ++ + +R + D+ + + + +W+
Sbjct: 109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC 168
Query: 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW 805
+ L+ V+S ++ + ++D+ G + E+L+
Sbjct: 169 EFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 225
Query: 806 AGEEKVILGGALGMVYLVDL---------IQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW 856
++++ G G + + DL L+ + H V L FD ++
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSH 285
Query: 857 DSCVVIYD 864
D ++I+D
Sbjct: 286 DDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 3e-09
Identities = 33/177 (18%), Positives = 73/177 (41%), Gaps = 4/177 (2%)
Query: 564 WCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM 623
W S + + + + S D +K+ + T R+ L+
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT--LNGH 177
Query: 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS 683
C+ + ++ G D+ + ++D+ECG + L GHE+ KR++SG+
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGA 235
Query: 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740
+D ++VW+ A+ P+ +L + +++ + + D Q+ + ++IW
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (199), Expect = 5e-17
Identities = 58/343 (16%), Positives = 115/343 (33%), Gaps = 28/343 (8%)
Query: 564 WCDKSILEPLHFCHSHKEAI-TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSS 622
W + L+ H + + T + CG + S D LK+ S TG+ R+ V +
Sbjct: 1 W-RRGELKSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 682
+ S + + V + + + KR++SG
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL----YGHTSTVRCMHLHEKRVVSG 113
Query: 683 SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742
S D T+RVW+ + + + + + + + V E + +L
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173
Query: 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC 802
+ H DG V+S + + V+D+ TG + + L
Sbjct: 174 QGHTNRVY------------SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221
Query: 803 LSWAGEEKVILGGALGMVYLVDL---IQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSC 859
+ ++ G A V + D+ +Q L+ H+ AV L F+ ++ D
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281
Query: 860 VVIYDVECGRIVTEL-----AGHEDAISCVAWDEKRKRLISGN 897
V ++D++ G + L G + + + G+
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 2e-08
Identities = 49/258 (18%), Positives = 88/258 (34%), Gaps = 22/258 (8%)
Query: 497 FYYLCYEGSVNLDMVQDWNQRHA-----LEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLL 551
+ +V + + L V +E GQ + R + +
Sbjct: 91 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV 150
Query: 552 KHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT 611
D D LH H ++ +GI V S D +++ ++T
Sbjct: 151 VSGA--YDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVET 206
Query: 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671
G + S + + ++ G DS V I+D++ G+ + L G S V
Sbjct: 207 GNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264
Query: 672 WDEKRKRL-ISGSWDCTVRVWN--TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728
+ K I+ S D TV++W+ TG ++ +S S + + S
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG----GVVWRIRASNTKLVC 320
Query: 729 AV----GTEAGELIIWSL 742
AV GTE +L++
Sbjct: 321 AVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 9e-07
Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 28/208 (13%)
Query: 495 NLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHS 554
Y+ V + + H L+ G + ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQ------GHTNRVYSLQFDGIHVVSGSL------ 195
Query: 555 TILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ 614
D S D +H H+ + + + + S D+ +KI +KTG+
Sbjct: 196 ----DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL--VSGNADSTVKIWDIKTGQC 249
Query: 615 ERSAVLSSM-TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL-----AGHEDAIS 668
++ + + C+ + ++ D V ++D++ G + L G +
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309
Query: 669 CVAWDEKRKRLISGSWDCT----VRVWN 692
+ + GS + T + V +
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.3 bits (183), Expect = 6e-15
Identities = 36/289 (12%), Positives = 84/289 (29%), Gaps = 14/289 (4%)
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGRI--VTELAGHEDAISCVAWDEKRKRLISGS 683
S D + + + V IY+ + V EL H ++ V W R+++
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70
Query: 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL- 742
D VW L ++ +C+ + + + AVG+ + + I
Sbjct: 71 TDRNAYVWTLKGRTWKPTL-----VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 743 --ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG--MQVCNKVFEE 798
+ + + + I ++V + + + + + + ++ +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDS 858
+ E G + V + + L
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 859 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
+ + + +V AGH+ +D +L G + PK +
Sbjct: 246 LLAVTFITESSLVA--AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.8 bits (135), Expect = 5e-09
Identities = 39/321 (12%), Positives = 91/321 (28%), Gaps = 26/321 (8%)
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSS 627
+H H +T V + + + G D + +LK + + V+ +
Sbjct: 41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100
Query: 628 LCILPDNCTMLVGCWDSCVVIYDV----ECGRIVTELAGHEDAISCVAWDEKRKRLISGS 683
+ P+ VG + I + + + W L +GS
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160
Query: 684 WDCTVRVWNTGAS-----------WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732
D R+++ S M + + + + S + +++A +
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220
Query: 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792
+ + + M + V F + +++ G++C ++ +
Sbjct: 221 HDSTVCLADADKK-MAVATLASETLPLLAVTFITES-SLVAAGHDCFPVLFTYDSAAGKL 278
Query: 793 NKVFEEKLLCL-SWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF----- 846
+ + S G L + HK++V +
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 847 DNCTMLV-GCWDSCVVIYDVE 866
C+ D + I+DV
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 7e-09
Identities = 19/231 (8%), Positives = 62/231 (26%), Gaps = 15/231 (6%)
Query: 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722
+ ISC AW++ R ++ + V ++ S + L + ++ + +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWVQVHELKEH---NGQVTGVDWA 60
Query: 723 KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-MLN 781
D+N++ +W+L+ L + + + G+ +++
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 782 VYDLTTGMQVCNKVFEEKLLCLS------WAGEEKVILGGALGMVYLVDLIQVQLLKQVR 835
+ +K + + + G + ++ ++
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 836 AHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886
+ ++ V + +A +
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLA 228
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 6/135 (4%)
Query: 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD 633
S + AV E VA+ G D + + + + S
Sbjct: 237 ATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295
Query: 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW----DEKRKRLISGSWDCTVR 689
D + H++++S ++ K + + D +
Sbjct: 296 TARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 690 VWNTGASWSHMKPSK 704
+W+ + S +K K
Sbjct: 355 IWDVRSLESALKDLK 369
|
| >d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: PreBEACH PH-like domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (166), Expect = 2e-14
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 16/106 (15%)
Query: 158 VILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNIEP-------------HKLLKVRLAG 204
V L T + P VV G + ++S+ LYF+ K
Sbjct: 3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTE 62
Query: 205 IKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNAL 250
I+ I RR+LLQ +EI+ + + + N L
Sbjct: 63 IRSIFSRRYLLQNTALEIFMANRVA---VMFNFPDPATVKKVVNFL 105
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 2e-13
Identities = 41/311 (13%), Positives = 98/311 (31%), Gaps = 16/311 (5%)
Query: 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652
+ DA++ + RQ + + ++ I + CV ++D+
Sbjct: 23 MQPVPFPPDALIGPGIPRHARQINTLNHGE-VVCAVTISNPT-RHVYTGGKGCVKVWDIS 80
Query: 653 CGRIVTELA-----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707
+ ++ ++ I LI G T+ +W+ A +K +
Sbjct: 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS 140
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED 767
+ I + + + I ++ + + + S D
Sbjct: 141 APACYALAISPDSKVCFSCC------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194
Query: 768 GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827
G ++ + G + + +DL G Q+ F ++ L + + + G V +
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254
Query: 828 VQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885
Q+ H+ VLSL F + D+ + + G + + ++
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD 313
Query: 886 WDEKRKRLISG 896
K +++G
Sbjct: 314 ISVDDKYIVTG 324
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 1e-11
Identities = 18/183 (9%), Positives = 46/183 (25%), Gaps = 2/183 (1%)
Query: 510 MVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSI 569
V Q + F + S+ +
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLC 629
H I ++ C G +A + +++ + + + + + SL
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLK 272
Query: 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVR 689
+ D+ + + G + + ++ K +++GS D
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKAT 331
Query: 690 VWN 692
V+
Sbjct: 332 VYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 3e-11
Identities = 46/296 (15%), Positives = 94/296 (31%), Gaps = 17/296 (5%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMT-----LSSLCILP 632
+H E + AV I V + G +K+ + + + S +LP
Sbjct: 49 NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D CT++VG S + I+D+ + A +C A + S +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ + I N+ + T + + S + Q
Sbjct: 168 WDLHNQTLVRQFQ-------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812
D + + + + G + + + V + + + E +L L +A K
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280
Query: 813 L-GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865
+ G ++ + Q + +VLS D+ ++ G D +Y+V
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 2e-07
Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 15/276 (5%)
Query: 554 STILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEG--ISVASVGRDAMLKIHSLKT 611
+ D+S+ + + C + I + + +G + V + + T
Sbjct: 73 CVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671
R + S+ +L I PD+ C D + ++D+ +V + GH D SC+
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731
+L +G D TVR W+ + D ++I L LAVG
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--------DFTSQIFSLGYCPTGEWLAVG 242
Query: 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791
E+ + + + Q + V + F+ G +S G + +LN + G +
Sbjct: 243 MESSNVEVLHVNKPDKYQLHLHESC--VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 792 CNKVFEEKLLCLSWAGEEKVIL-GGALGMVYLVDLI 826
+L + ++K I+ G + ++I
Sbjct: 301 FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 69.2 bits (167), Expect = 4e-13
Identities = 32/293 (10%), Positives = 70/293 (23%), Gaps = 14/293 (4%)
Query: 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC 686
L P + + V V H + SG
Sbjct: 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80
Query: 687 TVRVWNTGASW--------SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738
VR+W+T + P K + + + + +
Sbjct: 81 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140
Query: 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798
+ + M ++ + + + T + +
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200
Query: 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDS 858
L S G+ ++L + L + L+ D + D
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260
Query: 859 CVVIYDVECGRIVTELAGH---EDAISCVAWDEKRKRLISGNLVGAPKLYATE 908
+ I++V ++ + ED + W ++ L+S + G E
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 0.002
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 559 DVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS- 617
+ + + +H ++ + +G +AS D +KI ++ T + E++
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276
Query: 618 AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652
V + + L I+ ++ + + + E
Sbjct: 277 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 0.002
Identities = 29/285 (10%), Positives = 66/285 (23%), Gaps = 24/285 (8%)
Query: 553 HSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG 612
S V + L H T G AS ++I
Sbjct: 38 TSVYTVPVGS-------LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90
Query: 613 RQE--------RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 664
V S + + G + +
Sbjct: 91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150
Query: 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724
+ + + + + +K + S + + D
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210
Query: 725 NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784
+ G ++ L S + +S DG ++ S + + +++
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT----WSPDGTKIASASADKTIKIWN 266
Query: 785 LTTGMQV----CNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDL 825
+ T E++ L + W + ++ A G + V+
Sbjct: 267 VATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINFVNP 310
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 68.3 bits (165), Expect = 1e-12
Identities = 31/327 (9%), Positives = 83/327 (25%), Gaps = 34/327 (10%)
Query: 595 VASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNCTMLV-GCWDSCVVIYDV 651
+ + R L + + ++ ++ T + P +V D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 652 ECGRIVTELAGHE-----DAISCVAWDEKRKRLISGSWDCTVRVWNTGAS----WSHMKP 702
G + + ++ A K L + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGV 762
+ S + +I LA ++D ++L ++ + + +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW----EAET 179
Query: 763 LFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYL 822
D V + + + T + + +
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD----------------PTAYRTGLLT 223
Query: 823 VDLIQVQLL-KQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881
+DL ++ ++VR S + + + +D+E + + +
Sbjct: 224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSY 282
Query: 882 SCVAWDEKRKRLISGNLVGAPKLYATE 908
V + G +G Y E
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 12/182 (6%), Positives = 42/182 (23%), Gaps = 4/182 (2%)
Query: 514 WNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPL 573
++ ++ + + +++ + ++ L + + + +
Sbjct: 129 KAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188
Query: 574 HFCHS--HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCIL 631
H A + L L+TG V
Sbjct: 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF-STA 247
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
+ + + +D+E + + + V + G + +
Sbjct: 248 VNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
Query: 692 NT 693
+
Sbjct: 307 DA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 25/271 (9%), Positives = 67/271 (24%), Gaps = 16/271 (5%)
Query: 501 CYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDV 560
+ + + ++ S K +
Sbjct: 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI 137
Query: 561 SNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL 620
+ + + E + S + + L Q
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ--HESS 195
Query: 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV-TELAGHEDAISCVAWDEKRKRL 679
M D + + ++ D+E G + E+ + A + + R
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739
+ ++ + + ++ L + + +S D + + +G G+L
Sbjct: 256 --FGAYNVLESFDL--------EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 740 WSLENHLMTQQLS---DDINASVNGVLFSED 767
+ E Q+ + + + LF+ D
Sbjct: 306 YDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 19/180 (10%)
Query: 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC 686
L D + D V D E G +V + A +
Sbjct: 139 MLAWARDGSKLYGLGRDLHV--MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196
Query: 687 TVRVWNTGASWSHMK---------------PSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731
+ A + + + + + + + +
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791
L + LE + +++ + S V S DG V G L YD T +
Sbjct: 257 GAYNVLESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 9e-04
Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 16/150 (10%)
Query: 676 RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN---RIKCLAISKDNNQLAV-G 731
R +++ + + V +T ++ + + + ++
Sbjct: 1 RDYILAPARPDKLVVIDT--------EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV 52
Query: 732 TEAGELIIWSLEN----HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787
++ L+ L + ++ S+ G S DG + + L +
Sbjct: 53 NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112
Query: 788 GMQVCNKVFEEKLLCLSWAGEEKVILGGAL 817
E L + I A
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAW 142
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 5e-11
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714
+IV +D IS + + L+ SWD ++ V+ + + L+ L +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK----FDIQAKNVDLLQSLRYKH 57
Query: 715 RIKCLAISKDNNQLAV 730
+ C + +
Sbjct: 58 PLLCCNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 31/299 (10%), Positives = 81/299 (27%), Gaps = 27/299 (9%)
Query: 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL---AGHEDAISCVAWDEKRKRLI 680
+S + I+P +L+ WD + +Y + +L ++ + C + + I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 681 SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740
+ + + + L + K E + +
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 741 SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG------MQVCNK 794
+ S++ + R++ NN + + L ++
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 795 VFEEKLLCLSWAGEEKVILGGALGMVYLVDL---------------IQVQLLKQVRAHKD 839
++ + + L +E G V + +L +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 840 AVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896
V S+ F + + D + ++++ + + A + S V L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLA 310
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 32/337 (9%), Positives = 100/337 (29%), Gaps = 29/337 (8%)
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS---SMTLS 626
++ + + K+ I+ + I + D L ++ + + S L
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 627 SLCILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD 685
+ + + G ++ D+ L +E + + + +
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL--- 742
+ ++ + ++ + + K + ++++L VG ++ + L
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL-- 800
E+ T + S + L ++ + + V N
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240
Query: 801 --------------LCLSWAGEEKVILG-GALGMVYLVDLIQVQLLKQV-RAHKDAVLSL 844
+ ++ K + G+ G++ +L + +K + ++D+V+ +
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300
Query: 845 HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881
+ + + D I + + +I
Sbjct: 301 ACSDNILCLATSDDTFKTN----AAIDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 20/210 (9%), Positives = 55/210 (26%), Gaps = 27/210 (12%)
Query: 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS 621
++ D I ++ K + + ++ ++ L + +
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189
Query: 622 S----MTLSSLCILPDNCTMLVGCWDSCVVIYDVE---------------CGRIVTELAG 662
S + + D V + + C R+ +
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249
Query: 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722
++ + + + K L + D + WN ++ + N + I+
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNL--------QTRKKIKNFAKFNEDSVVKIA 301
Query: 723 KDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+N L + T + + + S
Sbjct: 302 CSDNILCLATSDDTFKTNAAIDQTIELNAS 331
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 62.8 bits (151), Expect = 5e-11
Identities = 33/340 (9%), Positives = 88/340 (25%), Gaps = 41/340 (12%)
Query: 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPDNCTMLV-GCWD 643
A+ + L + + + +S + + + PDN T V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 644 SCVVIYDVECGRIV------TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
+ D++ + + ++ A K + + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 698 SHMK-------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE------- 743
++ V + ++ + + D + G + ++ + + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 744 --------------NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789
Q + + F +D + DL TG
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 790 --QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF- 846
E + ++ + G L + DL Q +L+K + F
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFD 300
Query: 847 -DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885
+ +G + + +++ + V + +S
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 62.1 bits (149), Expect = 9e-11
Identities = 29/318 (9%), Positives = 83/318 (26%), Gaps = 43/318 (13%)
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRKRL-ISGSWDCTVR 689
+ M+V + + + + DV + + + + + +
Sbjct: 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65
Query: 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ 749
+ + + + ++ + AIS D ++ + +
Sbjct: 66 GIDL-DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124
Query: 750 QLSDDIN-------------ASVNGVLFSEDGCRVLSCGNNCMLNVYD------LTTGMQ 790
++ + V + ++DG ++ + ++V L
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184
Query: 791 VCNKVFEEKLLCLSWA------------------GEEKVILGGALGMVYLVDLIQVQLLK 832
+L ++ L VDL +
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244
Query: 833 QVRA-HKDAVLSLHFDNCTMLVGCW-DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890
Q A + + + + YD++ +++ + CVA+D+K
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKG 303
Query: 891 KRLISGNLVGAPKLYATE 908
+L G ++ +
Sbjct: 304 DKLYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 6e-08
Identities = 34/308 (11%), Positives = 82/308 (26%), Gaps = 41/308 (13%)
Query: 467 DIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGS--VNLDMVQDWNQRHALEVQI 524
D+ S ++ + + + Y L +D+ N HA +
Sbjct: 24 DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 83
Query: 525 MEF-GQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSN-----SWCDKSILEPLHFCHS 578
G+ SP + + + + + S D +P+
Sbjct: 84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR-TFP 142
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHS------LKTGRQERSAVLSSMTLSSLCILP 632
+ + +G + + + + L R + L
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202
Query: 633 DNCTML----------------VGCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEK 675
+ D++ G+ T+ A + K
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262
Query: 676 RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735
I G + + ++ + L+ +LD+ C+A K ++L +G
Sbjct: 263 DPNQIYGVLN-RLAKYDL--------KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 736 ELIIWSLE 743
+L +++ +
Sbjct: 314 DLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 9/108 (8%), Positives = 28/108 (25%), Gaps = 2/108 (1%)
Query: 564 WCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM 623
K+ E + + + L + LK + ++
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA-ANLDH 292
Query: 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671
T + + +G + + +++ + V + +S
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 20/297 (6%), Positives = 74/297 (24%), Gaps = 13/297 (4%)
Query: 499 YLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILS 558
G+ D + ++ R + E + + + + + + L
Sbjct: 56 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 115
Query: 559 DVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA 618
+ ++S + + + ++ ++ + +A
Sbjct: 116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAA 174
Query: 619 VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI-------VTELAGHEDAISCVA 671
+ + D+ + + S D + + +
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234
Query: 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731
+ +G +D + + ++ +
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294
Query: 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788
E G L+ + ++ +T+ + ++ + S D V+ ++ + + L
Sbjct: 295 PEKGVLLKYDVKTRKVTE-----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 25/281 (8%), Positives = 66/281 (23%), Gaps = 26/281 (9%)
Query: 493 ADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLK 552
+ + +++ + V + S + R
Sbjct: 92 GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151
Query: 553 HSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG 612
+ + D + + A A + ++ + ++
Sbjct: 152 ETDGYVMQAIHVYDMEG-RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210
Query: 613 R-------QERSAVLSSMTLSSLCILPDNCTMLVGCW-----DSCVVIYDVECGRIVTE- 659
+ L + + ++P + T G + +V+ G
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 660 -LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718
L S E + ++ ++ N +
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-----------KVTEVKNNLTD 319
Query: 719 LAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759
L +S D + V + G++ + LE + + D V
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 29/339 (8%), Positives = 83/339 (24%), Gaps = 31/339 (9%)
Query: 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS--CVVIY 649
G +A V R I + + V + + + D + + IY
Sbjct: 15 GDLIAFVSRGQ-AFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71
Query: 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVR--VWNTGASWSHMKPSKSLV 707
D G+ + + + +++ + + + +
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED 767
DN + G + ++ +E + +++ + F D
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH--DYAPAFDAD 189
Query: 768 GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS--------WAGEEKVILGG---- 815
+ + D V + ++ L G
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 816 -ALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF-----DNCTMLVGCWDSCVVIYDVECGR 869
+ + + + + ++L ++ YDV+
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 870 IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908
++ ++ ++ + RK ++ G + E
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.5 bits (90), Expect = 0.002
Identities = 21/267 (7%), Positives = 56/267 (20%), Gaps = 35/267 (13%)
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD--CTVR 689
P + ++ I DV ++ I V K +
Sbjct: 12 PLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69
Query: 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ 749
+++ + + + + + ++ V + E++ LE T
Sbjct: 70 IYDYR--------TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 750 QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE 809
A + S++ + + K
Sbjct: 122 IE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---------- 170
Query: 810 KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGR 869
+ A + L + + D V+ + E
Sbjct: 171 ---------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS---PDRVVLNFSFEVVS 218
Query: 870 IVTELAGHEDAISCVAWDEKRKRLISG 896
+ + + + +G
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAG 245
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 3e-10
Identities = 41/346 (11%), Positives = 101/346 (29%), Gaps = 17/346 (4%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H ++ + E V + D M++++ + + +L +
Sbjct: 11 HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASW 697
+ V + + + K + ++GS D T+ VW
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 698 SHMKPSKSLVSQLDLDNRIKCLAISK-------------DNNQLAVGTEAGELIIWSLEN 744
S + L + + + V +I
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189
Query: 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS 804
+ + + ++ + R +S + + ++DL G + L+ L
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249
Query: 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864
++ ++ A G + D + ++ + + +LV ++ IY+
Sbjct: 250 RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYN 309
Query: 865 VECGRIV-TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909
+ G++V + D I V + K + + G L +F
Sbjct: 310 LRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 835 RAHKDAVLS-LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893
R H +V++ L F++ ++ G D + +YD + + +L+GH+ + + + L
Sbjct: 9 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GIL 67
Query: 894 ISG 896
+SG
Sbjct: 68 VSG 70
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 0.002
Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 16/245 (6%)
Query: 544 LTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAM 603
L +SS+ H + + H ++ + G G V S D
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNT 182
Query: 604 LKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 663
L + + + + + S + + D+ + I+D+E G ++ L GH
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242
Query: 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723
+ + +K + N + + + +
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN-----------LSAITTFY 291
Query: 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLN 781
++ + V + I++L + + + V F V + L
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLE 350
Query: 782 VYDLT 786
+ D +
Sbjct: 351 ILDFS 355
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.6 bits (145), Expect = 3e-10
Identities = 48/374 (12%), Positives = 102/374 (27%), Gaps = 68/374 (18%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE------------RSAVLSSMTLS 626
H I +V+ C S D LK+ K E +S + L
Sbjct: 13 HDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 627 SLCILPDNCTMLV-GCWDSCVVIYDVECGRIVTELAGHED---------------AISCV 670
++ ++ + ++ Y + ++ +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 671 AWDEKRKRLISGSWDCTVRVWN-----------TGASWSHMKPSKSLVSQLDLDNRIKCL 719
RL++ T +W T ++ ++ S + +
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 720 AISKDNNQLAVGTEAGELIIWS-----LENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774
IS+ +A G G + I + +Q + + S+ V FS G +
Sbjct: 191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 775 GNNCMLNV---YDLTTGMQVCNKVFEEKLLCLS---------------WAGEEKVILGGA 816
++ Y+ G ++ + S E + G
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309
Query: 817 LGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDV---ECGRIVTE 873
G + D+ + + + H D + G + ++DV + G
Sbjct: 310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 369
Query: 874 LAGHEDAISCVAWD 887
A +++ CV D
Sbjct: 370 GADLNESLCCVCLD 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 24/219 (10%), Positives = 67/219 (30%), Gaps = 19/219 (8%)
Query: 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL------VSQL 710
H+ I V+ +S S D ++VW+ + KS
Sbjct: 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 711 DLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR 770
+D + + +A + +G+L+ + + T+++ + ++ +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 771 V-LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ 829
+ N+ +L+ + T ++ ++ +E L +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIW-----KFHPFADESNSLTLNWSPTLELQ----G 175
Query: 830 LLKQVRAHKDAVLSLHFDNCTMLV-GCWDSCVVIYDVEC 867
++ S+ ++ G + V I ++
Sbjct: 176 TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST 214
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 41/342 (11%), Positives = 80/342 (23%), Gaps = 64/342 (18%)
Query: 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC 635
H E VA+ L + + + + + + L + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--- 692
L RL++ T +W
Sbjct: 123 WAL---------------------------KWGASNDRLLSHRLVATDVKGTTYIWKFHP 155
Query: 693 --------TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
T ++ ++ S + + IS+ +A G G + I L
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELST 214
Query: 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS 804
+ + + S + ++ + + +
Sbjct: 215 LRPLYNFESQHS-------MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 267
Query: 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL--SLHFDNCTMLVGCWDSCVVI 862
V Q AH V+ S + T+ WD +
Sbjct: 268 RI------------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 315
Query: 863 YDVECGRIVTELAGHEDAISC----VAWDEKRKRLISGNLVG 900
+DV+ +T L H D I +A DE L +
Sbjct: 316 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 5e-06
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 629 CILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC----VAWDEKRKRLISGSW 684
T+ WD + +DV+ +T L H D I +A DE L
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355
Query: 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717
V+ G + + LD I+
Sbjct: 356 FD-VKFLKKGWRSGMGADLNESLCCVCLDRSIR 387
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 4e-10
Identities = 40/303 (13%), Positives = 85/303 (28%), Gaps = 23/303 (7%)
Query: 626 SSLCILPDNCTMLVGCWDSCVV-IYDVECGRI--VTELAGHE-DAISCVAW--DEKRKRL 679
+ L P + C S V D ++ V + GH ++ V + + + L
Sbjct: 21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYL 80
Query: 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL-DNRIKCLAISKDNNQLAVGTEAGELI 738
SG V VW ++ S+ + I ++ + +L V E +
Sbjct: 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 140
Query: 739 I--WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796
S ++ ++S L R ++ G++ + Y +
Sbjct: 141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 200
Query: 797 EEK-----------LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH 845
K + + + ++ Q
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260
Query: 846 FDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD---EKRKRLISGNLVGAP 902
D+ D+ + ++DV + V + + + R+IS +L G
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 903 KLY 905
Y
Sbjct: 321 NFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.1 bits (120), Expect = 3e-07
Identities = 18/190 (9%), Positives = 39/190 (20%), Gaps = 7/190 (3%)
Query: 510 MVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSI 569
+D G++ + + S V
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIH----SLKTGRQERSAVLSSMTL 625
H + V + S + +
Sbjct: 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD---EKRKRLISG 682
D+ D+ + ++DV + V + + + R+IS
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 683 SWDCTVRVWN 692
S D T+ +
Sbjct: 315 SLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 0.001
Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 4/109 (3%)
Query: 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693
T+ SC E + + + ++ + D T+RVW+
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD- 279
Query: 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742
+ K + + ++ N ++ + G L + L
Sbjct: 280 ---VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 9e-10
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISGSW 684
+ + + G D+ + IY V+ +I+ L H+D ++ + W+ L+S
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277
Query: 685 DCTVRVWN 692
D ++ WN
Sbjct: 278 DACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 4e-09
Identities = 43/297 (14%), Positives = 98/297 (32%), Gaps = 16/297 (5%)
Query: 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCI 630
E L H + ITA+ + + S D + S + Q+ S ++ S+ S
Sbjct: 4 EVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 59
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
+ ++ + A+ D + +G +VR+
Sbjct: 60 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750
+ G++ S + ++ + ++ L+ + + L L
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL----------KTPLRAKPSYIS 169
Query: 751 LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810
+S G + + L T+ + + EK E+
Sbjct: 170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229
Query: 811 VILGGALGMVYLVDLIQV-QLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDV 865
V G +++ + + +++K + AHKD V +L + T++ D+C+ ++V
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (114), Expect = 1e-06
Identities = 37/278 (13%), Positives = 75/278 (26%), Gaps = 40/278 (14%)
Query: 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN------------TGASWSHMK 701
++ ++GH I+ + + LISGS+D + W+ S +
Sbjct: 3 DEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 58
Query: 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII-----WSLENHLMTQQLSDDIN 756
S+ L ++A G + L T + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL-------LCLSWAGEE 809
+ G S V + ++V + + S
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 810 KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSC---------- 859
+ G + + L R K +S +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 860 VVIYDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISG 896
+ IY V+ +I+ L H+D ++ + W+ L+S
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSS 275
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 9e-04
Identities = 21/248 (8%), Positives = 72/248 (29%), Gaps = 11/248 (4%)
Query: 547 QSSLLKHSTILSDVSNS------WCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGR 600
S HS ++ + NS ++ H+ +V
Sbjct: 39 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT 98
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
+ + +V + S++ + + + + ++ V +
Sbjct: 99 NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 158
Query: 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT----GASWSHMKPSKSLVSQLDLDNRI 716
S ++ + +G + +++ + + + +
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218
Query: 717 KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN 776
+ + +A G+ + I+S++ + + + VN +L+ ++S G
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277
Query: 777 NCMLNVYD 784
+ + ++
Sbjct: 278 DACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.5 bits (126), Expect = 4e-08
Identities = 38/277 (13%), Positives = 76/277 (27%), Gaps = 12/277 (4%)
Query: 626 SSLCILPDNCTMLVGCWDSCVVIYDVECGR-IVTELAGHEDAISCVAWDEKRKRLISGSW 684
++L D T+ + + +D+ G H I+ + K
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75
Query: 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
D V G+ K + L ++ LA+S D + I +
Sbjct: 76 DHLKVVPAGGSGVDSSKAVAN-----KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS 804
+ + A N F G + + V +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 805 WAGEEK--VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVI 862
A V + K A +S DN + G D+ V++
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 863 YDVECG---RIVTELAGHEDAISCVAWDEKRKRLISG 896
+++ I+ + A +++ V W + ++S
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSA 286
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.5 bits (126), Expect = 5e-08
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 629 CILPDNCTMLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWD 685
PDN + G D+ V+++++ I+ + A +++ V W + ++S D
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQD 289
Query: 686 CTVRVWN 692
++ WN
Sbjct: 290 SNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (123), Expect = 1e-07
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693
G I GH AI+ ++ K L S + + W+
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.2 bits (115), Expect = 1e-06
Identities = 40/302 (13%), Positives = 102/302 (33%), Gaps = 18/302 (5%)
Query: 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632
+ H +AITA++ +G ++ S + + + TG R T+ +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+ WD + + G S ++ + + + +
Sbjct: 65 SKGDLFTVSWDDHLKVVPAG---------GSGVDSSKAVANKLSSQPLGLAVSADGDIAV 115
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
S ++++ + C+A+S D +AVG + ++ ++ L +++ +
Sbjct: 116 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT 175
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-----MQVCNKVFEEKLLCLSWAG 807
A + V FS +G +++ + + Y + +
Sbjct: 176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235
Query: 808 EEKVILGGALGMVYLVDL---IQVQLLKQVRAHKDAVLSLHFDNCTMLV-GCWDSCVVIY 863
++ G V + ++ ++ + +V S+ + N T +V DS + +
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Query: 864 DV 865
+V
Sbjct: 296 NV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 7e-05
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 829 QLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGR-IVTELAGHEDAISCVA 885
+ + H A+ +L D T+ + + +D+ G H I+ +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 886 W 886
Sbjct: 63 T 63
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 5e-07
Identities = 37/322 (11%), Positives = 79/322 (24%), Gaps = 46/322 (14%)
Query: 632 PDNCTMLV-----GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR--------KR 678
PD + V + + D E GR++ + G VA D R
Sbjct: 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSR 70
Query: 679 LISGSWDCTVRVWN--TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736
+ G V V++ T + ++ + + + L + A
Sbjct: 71 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130
Query: 737 LIIWSLENHLMTQQLSDDINA------SVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGM 789
+ + LE + L + DG ++ G +
Sbjct: 131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190
Query: 790 QVCNKVFEE-------KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQV----RAHK 838
+ L + + + G + ++ + R
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250
Query: 839 DAVLSLHFDNCTMLVGCWDSC----------VVIYDVECGRIVTELAGHEDAISCVAW-- 886
++ H + + VV+ D + G + + I +
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ 309
Query: 887 DEKRKRLISGNLVGAPKLYATE 908
DEK ++ E
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAE 331
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 26/251 (10%), Positives = 55/251 (21%), Gaps = 28/251 (11%)
Query: 467 DIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIME 526
D V+ I+L + +L
Sbjct: 84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 143
Query: 527 FGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAV 586
+P P T + ++ + I F + I
Sbjct: 144 MLDVPDCYHIFPTAPDTFFMHC---RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP 200
Query: 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTL--SSLCILPDNCTMLVGCWDS 644
A + + + L +G + + ++T + P +
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260
Query: 645 C--------------------VVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISG 682
VV+ D + G + + I + DEK
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALS 319
Query: 683 SWDCTVRVWNT 693
+ D T+ + +
Sbjct: 320 TGDKTLYIHDA 330
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 24/290 (8%), Positives = 62/290 (21%), Gaps = 33/290 (11%)
Query: 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKR--------KRLISGSWDCTVRVWNTGASW 697
+ CG + G +++ R G V V++
Sbjct: 48 NWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107
Query: 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHLMTQQLSDDIN 756
+ + R+ + + L S+ Q
Sbjct: 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC 167
Query: 757 ASVN------GVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE 809
++ L S N + A
Sbjct: 168 FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-----QANYP 222
Query: 810 KVILGGALGMVYLVDLI--QVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865
+++ + D+ + + ++ + +F M+ ++ ++
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282
Query: 866 ECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV--------GAPKLYAT 907
A + + + + +G+ GA YA
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-GELI 738
I+ + VWN + +L +D+ +++ + +S D L VG ++
Sbjct: 8 IASPESQQIHVWNLNHE-----GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62
Query: 739 IWSLE--NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN 793
+ + + +T + S+ + G V N
Sbjct: 63 AYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 119
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 3/125 (2%)
Query: 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS 705
+ + D + +IV + A+ + L+ D + + +
Sbjct: 44 IALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDL--WAKEPTKVAE 100
Query: 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFS 765
+ ++ + ++ G L +Q+ +V+ +
Sbjct: 101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 160
Query: 766 EDGCR 770
+
Sbjct: 161 PEPRV 165
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.003
Identities = 11/128 (8%), Positives = 31/128 (24%), Gaps = 13/128 (10%)
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729
D ++ + + + SK +V +D + +S L
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGD--------SKKIVKVIDTGYAVHISRMSASGRYLL 77
Query: 730 VGTEAGELIIWSLENH----LMTQQLSDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYD 784
V + + L + ++ + + + + + + D
Sbjct: 78 VIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137
Query: 785 LTTGMQVC 792
T
Sbjct: 138 GETLEPKQ 145
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.9 bits (86), Expect = 0.004
Identities = 4/59 (6%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHM 700
+ + DV ++ + + + ++ ++ + V + +T +
Sbjct: 11 SDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIA 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 917 | |||
| d1t77a1 | 304 | Lipopolysaccharide-responsive and beige-like ancho | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.98 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d1t77a2 | 110 | Lipopolysaccharide-responsive and beige-like ancho | 99.77 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.72 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.69 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.66 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.44 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.38 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.1 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.89 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.8 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.79 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.78 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.75 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.73 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.65 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.63 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.63 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.54 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.51 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.49 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.48 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.33 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.05 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.68 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.65 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.62 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.62 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.49 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.48 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.23 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.21 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.16 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.11 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.05 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.04 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.98 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.72 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.61 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.53 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.34 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.86 | |
| d1zsqa1 | 125 | Myotubularin-related protein 2, N-terminal domain | 95.59 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.37 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.12 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.98 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.42 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.83 | |
| d2rnrb1 | 108 | TFIIH basal transcription factor complex p62 subun | 90.82 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.18 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.12 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 90.12 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.48 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 88.16 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 87.23 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.47 |
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-101 Score=818.54 Aligned_cols=278 Identities=55% Similarity=0.922 Sum_probs=269.9
Q ss_pred hhHHHHHHHHcCCCChHHHHHHhhhccCCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHH
Q psy3053 262 DQEIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKE 341 (917)
Q Consensus 262 ~~~~~~~~w~~~~isnf~yl~~ln~~~grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~ 341 (917)
...++|++|++|+||||||||+||.+|||||||++|||||||||+||+|++|||+|+++||||||||||||++|++++++
T Consensus 22 ~~~~~t~kW~~g~iSNfeYLm~LN~~sGRSf~D~~qYPIfPWVi~dy~s~~ldl~~~~~~RDLskpig~l~~~r~~~~~~ 101 (304)
T d1t77a1 22 KASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAE 101 (304)
T ss_dssp HHCSHHHHHHTTSSCHHHHHHHHHHHHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHH
T ss_pred HHhhHHHHHHcCCCcHHHHHHHHHHHhCCCCCCcccCcccCeeeccCCcccccccCccccccCCCchhccCHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCC---CCCcccCCCCCChhhHhhhhcccCchh--HHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccC
Q psy3053 342 RYNEMP---HPKFLYGSHYSTPGFVLFYLVRKFPQY--MLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYD 416 (917)
Q Consensus 342 ~~~~~~---~~~~~y~~~ys~~~~v~~~l~r~~p~~--~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~ 416 (917)
||+++. .++||||+|||+|++|++||+|+|||+ ++.+|+|+||+|||+|+||+++|+++..+++|+||||||||+
T Consensus 102 ~~~~~~~~~~~~~~y~s~yS~~~~V~~~L~R~ePft~l~~~lq~g~fD~~~R~F~si~~~~~~~~~~~~d~~EliPEFf~ 181 (304)
T d1t77a1 102 RYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYY 181 (304)
T ss_dssp HHHHCCCSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGT
T ss_pred HHHhcccCCCCCcccCCCCCChhHHHHHHhcCCchhHHHHHhhcCcccCCccccccHHHHHHHhcccccchhhcCchhhc
Confidence 999875 579999999999999999999999974 678999999999999999999999999999999999999996
Q ss_pred CCCCcccccccCCCCCccccCCceeCCeecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCc
Q psy3053 417 TEQKGDFLENSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNL 496 (917)
Q Consensus 417 ~~~~~~fl~n~~~~~~g~~~~~~~~~dv~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~ 496 (917)
. ||||+|.|+++||++++|+.|+||+||+||++|++||++||+||||+|||++||+||||||||||+|++|++|.|+
T Consensus 182 ~---Pe~f~n~n~~~~g~~~~g~~v~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLiFG~kq~G~~A~~a~Nv 258 (304)
T d1t77a1 182 L---PEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNV 258 (304)
T ss_dssp C---GGGGSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCC
T ss_pred C---hHhhhhccccccccccCCCcccccccCCccCCcHHHHHHHHHHHhchHHHhHhhhhHHhhhccccCCHHHHHhccc
Confidence 5 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccccCcccChHHHHHHHHHHhhhCCCccccccCCCCCc
Q psy3053 497 FYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542 (917)
Q Consensus 497 f~~l~yeg~v~~~~i~d~~~r~a~e~~i~~fGQ~P~qLF~~pHP~r 542 (917)
|+|++|++.++.+.+.|+.++.+++.++.+|||+|.|||..|||+|
T Consensus 259 f~p~~Y~~~~~~~~~~d~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 304 (304)
T d1t77a1 259 FYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 304 (304)
T ss_dssp BCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred cccccccccccccccCCHHHHHHHHHHHHHCCCCchhhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999987
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-39 Score=345.84 Aligned_cols=308 Identities=14% Similarity=0.188 Sum_probs=276.5
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
...+.|+||+++|++++|+|++++|+||+.||+|+|||+.+++.+..+..|...|.+++++|++..+++++.++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
....+....+.+|...+.++.++++++.+++++.|+.+++||+.++ ........|...+.++++++++..+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc-------eeeeEEccCCCcceeeecccCCCEEEE
Confidence 9999999999999999999999999999999999999999999876 344556678899999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
|+.||.|++|++.+++....+. .+...+.+++++|++.........+..... ...+...
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 219 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKK--------------------SGKPGPF 219 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC---------------------------CCE
T ss_pred EeCCCeEEEEeeccceeeEEEe-cCCCCceEEEEeeccccceeeccccceeee--------------------eccCCce
Confidence 9999999999999999988887 788999999999987654433333222211 1223347
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
+++|+.||.|++||..+++++.++.+|...|.++ ++++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|
T Consensus 220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~ 299 (317)
T d1vyhc1 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299 (317)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS
T ss_pred eEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 8899999999999999999999999999999988 66899999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q psy3053 889 KRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 889 dg~~LaSgs~DG~V~IWd 906 (917)
++++|+||+.||+|+|||
T Consensus 300 ~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 300 TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEeCCCeEEEeC
Confidence 999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-37 Score=336.58 Aligned_cols=284 Identities=18% Similarity=0.246 Sum_probs=246.7
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-----eeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-----SAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
+.++.+ .|.+.|++++|+|+|++|+||+ ||.|+|||+.++.... ....|...|.+++|+|++++|++|+.||.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 345555 7999999999999999999987 8999999998754332 23457788999999999999999999999
Q ss_pred EEEEEecc--CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 646 VVIYDVEC--GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 646 I~Iwdl~t--g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
|++||+.. ++....+.+|...|.+++|+|++..+++++.|+.|++|++.++ ........|...|.+++|++
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~-------~~~~~~~~~~~~v~~l~~s~ 193 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccc
Confidence 99999874 4566778899999999999999999999999999999999876 34445667889999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEE
Q psy3053 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCL 803 (917)
Q Consensus 724 dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l 803 (917)
++..+++|+.||.+++||+++++.+..+. +...|.+++|+|+++.+++++.|+.+++||+.++.....
T Consensus 194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------- 261 (337)
T d1gxra_ 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---------- 261 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE----------
T ss_pred cccccccccccccccccccccceeecccc--cccceEEEEEcccccccceeccccccccccccccccccc----------
Confidence 99999999999999999999999888775 788999999999999999999999999999887654322
Q ss_pred EEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE
Q psy3053 804 SWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881 (917)
Q Consensus 804 ~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V 881 (917)
..|...|.++ ++++++|++|+.||.|++||+.+++.+.... |.+.|
T Consensus 262 -------------------------------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v 309 (337)
T d1gxra_ 262 -------------------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSV 309 (337)
T ss_dssp -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred -------------------------------cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCE
Confidence 2355566666 4578889999999999999999999888765 78899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 882 SCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
++++|+|++++|++|+.||+|+|||+
T Consensus 310 ~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 310 LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 99999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-36 Score=336.73 Aligned_cols=296 Identities=23% Similarity=0.355 Sum_probs=245.3
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee------------------ccccceEEEEEeCCCCEE
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV------------------LSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~------------------~~~~~V~sl~~spd~~~L 637 (917)
..+|++.|+||+|||||++||+|+ |++|+|||+.+++.+..+. .+...|.+++|+|++++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 347999999999999999999986 8999999999888766553 345569999999999999
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
++|+.||.|++|+..+++.+....+|...|.++++++++..+++|+.++.+++||..+. .......+.....
T Consensus 137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~ 208 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--------QCSLTLSIEDGVT 208 (388)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--------EEEEEEECSSCEE
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc--------ccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998765 2222333444455
Q ss_pred EEEEeC-CCCEEEEEECCCeEEEEECCCCeeeEEec------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 718 CLAISK-DNNQLAVGTEAGELIIWSLENHLMTQQLS------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 718 ~l~~sp-dg~~Lasgs~dG~I~iwDl~~~~~~~~l~------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
++.+++ ++.++++|+.||.|++||..++.....+. .+|.+.|.+++|+|+++.|++++.||.|++||+.++..
T Consensus 209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 288 (388)
T d1erja_ 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288 (388)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence 555554 78999999999999999999988776654 25778999999999999999999999999999987654
Q ss_pred EEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 791 VCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 791 i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
...... ...+........|...|.++ ++++++|++|+.||.|++||+.++
T Consensus 289 ~~~~~~----------------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 340 (388)
T d1erja_ 289 KSDSKT----------------------------PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340 (388)
T ss_dssp --------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred cccccc----------------------------ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 322111 01123344556788888888 568999999999999999999999
Q ss_pred eEEEEecCCCCCEEEEEE------cCCCCEEEEEeCCCcEEEEecC
Q psy3053 869 RIVTELAGHEDAISCVAW------DEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slaf------Spdg~~LaSgs~DG~V~IWdl~ 908 (917)
+++.++.+|.+.|+++++ +|++.+||||+.||+|+||+++
T Consensus 341 ~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999999999999999975 6789999999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-34 Score=313.80 Aligned_cols=290 Identities=17% Similarity=0.284 Sum_probs=253.9
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
+++.++|+||+++|++++|+|++++||||+.||+|+|||+.+++.+..+..|..+|.+++|+|++.++++|+.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 650 DVECG----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 650 dl~tg----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+.... +....+.+|........... +..++.+..|+....|..... ........+...+.+..+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 196 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETG-------QQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTS
T ss_pred cccccccccccceeccccccccccccccc-ccccccccccccccccccccc-------cccccccccceeEeeecccccc
Confidence 97654 44566778887777666654 467888889999999987654 2344455677889999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~ 805 (917)
..+++|+.||.|++||+++++.+..+. +|...|++++|+|++.+|++++.||.+++||+...........
T Consensus 197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~--------- 266 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--------- 266 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---------
T ss_pred ceeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc---------
Confidence 999999999999999999999999988 8999999999999999999999999999999987755432211
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 806 AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 806 s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
..+...+.++ ++++++|++|+.||.|++||+.+++++..+.+|.++|++
T Consensus 267 -----------------------------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~ 317 (340)
T d1tbga_ 267 -----------------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317 (340)
T ss_dssp -----------------------------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred -----------------------------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 1244455555 568899999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWd 906 (917)
++|+|++++|+||+.||.|+|||
T Consensus 318 l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=310.28 Aligned_cols=324 Identities=20% Similarity=0.296 Sum_probs=274.5
Q ss_pred cccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEE
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVI 648 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~I 648 (917)
.+++..+++||.+.|.+ +++++|++|||||.||+|+|||+.++++++++.+|..+|.+++|+|+ +|++|+.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence 45677899999999876 47778999999999999999999999999999999999999999874 9999999999999
Q ss_pred EEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 649 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 649 wdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
|+............+...+......+ ..++.+..|+.+.+|+..++. .......... ......+....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~ 150 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQ-------CLHVLMGHVA--AVRCVQYDGRRV 150 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCC-------EEEEEECCSS--CEEEEEECSSCE
T ss_pred cccccccceecccccceeEeeeeccc--ccccccccceeEEEeeccccc-------ceeeeecccc--cceeecccccee
Confidence 99998888887777777777776654 688899999999999987761 1111222222 233445567789
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeC
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAG 807 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~ 807 (917)
++++.||.+++||......+..+. +|...+.. +++++..+++++.||.|++||++.++.+.... +...+.++++++
T Consensus 151 ~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 227 (342)
T d2ovrb2 151 VSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227 (342)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET
T ss_pred eeecCCCeEEEeecccceeeEEEc-Cccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC
Confidence 999999999999999999888887 56555544 55678899999999999999999998877655 456788999988
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEec---CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEec-----CCCC
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVRA---HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELA-----GHED 879 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~~---h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~-----~h~~ 879 (917)
+ .+++|+.||.|++||....+....+.+ |...+.+++++++++++|+.||+|++||+++++.+..+. +|.+
T Consensus 228 ~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~ 306 (342)
T d2ovrb2 228 N-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306 (342)
T ss_dssp T-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred C-EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC
Confidence 7 999999999999999999988887764 667888899999999999999999999999999988774 5778
Q ss_pred CEEEEEEcCCCCEEEEEeCCCc----EEEEecCcc
Q psy3053 880 AISCVAWDEKRKRLISGNLVGA----PKLYATEFY 910 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~----V~IWdl~~~ 910 (917)
.|++++|+|++.+|++|+.||+ |++||++..
T Consensus 307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 8999999999999999999996 999999753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-34 Score=315.54 Aligned_cols=325 Identities=16% Similarity=0.169 Sum_probs=262.2
Q ss_pred eeeeccCCcce-EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 573 LHFCHSHKEAI-TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 573 ~~~l~~H~~~V-tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..+|+||.+.| +|+ +++|++|+||+.||+|+|||+.+++.+.++.+|..+|.+++|+|+ ..|++|+.||+|++|+.
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 56789999886 555 556889999999999999999999999999999999999999986 58999999999999999
Q ss_pred ccCeeeEEeccCC--CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC----------------CcceeeeccCC
Q psy3053 652 ECGRIVTELAGHE--DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP----------------SKSLVSQLDLD 713 (917)
Q Consensus 652 ~tg~~i~~l~~H~--~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~----------------~~~~~~~~~h~ 713 (917)
..++.......+. ..+....+.+++..+++++.|++|++||+.+....... .........|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 9988776665443 34456677888999999999999999998765311100 00111122233
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~ 793 (917)
..+ ..+.++++.+++++.|+.+++||+.+++.+.... .+...+.++.++|++..+++++.|+.|++||..++..+..
T Consensus 162 ~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 238 (355)
T d1nexb2 162 ASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238 (355)
T ss_dssp SCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccc--cccccccceeeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEeeeccccccccc
Confidence 333 3455678999999999999999999999888877 7788899999999999999999999999999999988776
Q ss_pred ee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCce---EEEeecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 794 KV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAV---LSLHFDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 794 ~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V---~sis~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
.. +...+.+++++++ .+++|+.||.|++||+.++..... .|...+ .++++++.++++| .||.|++||+++++
T Consensus 239 ~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~ 314 (355)
T d1nexb2 239 LQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK 314 (355)
T ss_dssp ECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred cccccccccccccccc-eeeeeecccccccccccccceecc--cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCC
Confidence 55 5677999999876 999999999999999998875544 344433 3446678777666 58999999999999
Q ss_pred EEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 870 IVT-ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 870 ~l~-~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++. .+.+|.++|++++|+|+ ..+++++.||.++||.++
T Consensus 315 ~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 315 LVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp BCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred EEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 875 56789999999999987 478889999998877654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-34 Score=314.54 Aligned_cols=287 Identities=13% Similarity=0.136 Sum_probs=243.9
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee-
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI- 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~- 656 (917)
.+++.+.+++++|+|+.|+.++ ++.+.+|++.++...+.+.+|...|++++|+|+|++||+|+.||+|++||+.+++.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 4556677899999999998875 67799999999999999999999999999999999999999999999999988764
Q ss_pred -eEEeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE-EEEEE
Q psy3053 657 -VTELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ-LAVGT 732 (917)
Q Consensus 657 -i~~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-Lasgs 732 (917)
...+.+|.++|.+++|+|++++|++++. +..+++|++.++. ......+|...|.+++|+|+++. +++|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-------SNGNLTGQARAMNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-------BCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred cccccccccCcccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccceeeecccc
Confidence 3567889999999999999999999986 4569999998762 23335678899999999999875 88899
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
.||.|++||+++++...... .|...|.+++|+|+++++++++.|+.+++||..++.....+....
T Consensus 167 ~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-------------- 231 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-------------- 231 (311)
T ss_dssp TTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--------------
T ss_pred cccccccccccccccccccc-cccccccccccCccccccccccccccccccccccccccccccccc--------------
Confidence 99999999999999888887 889999999999999999999999999999998876554332110
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC---CEEEEEEc
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED---AISCVAWD 887 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~---~V~slafS 887 (917)
....+|.+.|+++ ++++++|++|+.||.|++||+++++++.++..|.. .+.++.|+
T Consensus 232 -------------------~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~ 292 (311)
T d1nr0a1 232 -------------------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292 (311)
T ss_dssp -------------------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred -------------------cccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence 0124688888888 55899999999999999999999999999887643 45555554
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q psy3053 888 EKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..|++++.||.|++||.+
T Consensus 293 --~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 --KQALVSISANGFINFVNPE 311 (311)
T ss_dssp --SSCEEEEETTCCEEEEETT
T ss_pred --CCEEEEEECCCEEEEEeCC
Confidence 5679999999999999975
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-33 Score=315.08 Aligned_cols=326 Identities=14% Similarity=0.086 Sum_probs=243.5
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
+.++|+|++|+|||++||+|+.||.|++|+..+++ .+..+.+|..+|.+++|+|++++|++|+.|++|++||+.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 45789999999999999999999999999998775 5667788999999999999999999999999999999997754
Q ss_pred --eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 657 --VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 657 --i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
...+.+|...|++++|+|+++.|++|+.|++|++|++...... .........|...|.+++|+|+++++++|+.|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~---~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D 162 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---EEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeeccccc---ccccccccccccccccccccccccceeccccC
Confidence 4456789999999999999999999999999999998765211 11122345688899999999999999999999
Q ss_pred CeEEEEECCCC------------------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-
Q psy3053 735 GELIIWSLENH------------------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV- 795 (917)
Q Consensus 735 G~I~iwDl~~~------------------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~- 795 (917)
|.+++||.... ....... .|...|.+++|+|+|+.|++++.|+.|++||+.++..+....
T Consensus 163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 241 (371)
T d1k8kc_ 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241 (371)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred cEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence 99999998643 2333333 678899999999999999999999999999999998887665
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCE--EEEEeCCCeEEEEECcCCeEEEE
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT--MLVGCWDSCVVIYDVECGRIVTE 873 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~--Lasgs~DG~I~Iwdl~tg~~l~~ 873 (917)
+..++.+++|++++.+++++.|+.+.+|..........+.++..........+.. -.....|........ .......
T Consensus 242 ~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS-AAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----------CCC
T ss_pred ccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecc-cccccee
Confidence 4567999999999999999999987776554332222222211111000000000 000000111111110 0011111
Q ss_pred ecCCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEecCc
Q psy3053 874 LAGHEDAISCVAWDEKR----KRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 874 l~~h~~~V~slafSpdg----~~LaSgs~DG~V~IWdl~~ 909 (917)
...|.+.|+++++.+.+ ..++|+|.||.|++||++.
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 23599999999998754 4689999999999999964
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-33 Score=302.08 Aligned_cols=286 Identities=14% Similarity=0.245 Sum_probs=230.9
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-ccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-LSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
..++++||.++|++++|+|+|++|+||+.||+|++||+.+++..+.+. .|...|.+++|+|++.+ ++++.|+.+++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 467899999999999999999999999999999999999999888774 68889999999999864 5667799999999
Q ss_pred eccCee---eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 651 VECGRI---VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 651 l~tg~~---i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
...... ......|...+.++++++++..+++++ ++.+.+|+.... ........+.+++++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~-----------~~~~~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL-----------TEVPISYNSSCVALSNDKQF 150 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE-----------EEEECSSCEEEEEECTTSCE
T ss_pred cCCccccccccccccccccccccccccccccccccc-cccccccccccc-----------cccccccccccccccccccc
Confidence 865432 223345778899999999998777665 678999985321 12234456889999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC
Q psy3053 728 LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~ 807 (917)
+++|+.||.|.+||+++++........|...|.+++|+|+++++++++.|+.|++||+.++.....
T Consensus 151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-------------- 216 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH-------------- 216 (299)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC--------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence 999999999999999988765544446889999999999999999999999999999876643311
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeE--EEEecCC-CCCEE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRI--VTELAGH-EDAIS 882 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~--l~~l~~h-~~~V~ 882 (917)
...+.+|...|+++ ++++++|++|+.||.|++||++++.. ......| ...|.
T Consensus 217 -----------------------~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 273 (299)
T d1nr0a2 217 -----------------------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273 (299)
T ss_dssp -----------------------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred -----------------------cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence 11234677888887 56899999999999999999987643 3333344 45677
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 883 CVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+++| +++++|+||+.||+|++||+.
T Consensus 274 ~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 274 SVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEE-EETTEEEEEETTSCEEEEECC
T ss_pred EEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 7765 567899999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-31 Score=291.31 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=222.7
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee--eeeeccccceEEEEEeCCCCEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE--RSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~~~~~~~~V~sl~~spd~~~Las 639 (917)
.+|+.. .....+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.++... ..+..|..+|.+++|+|+++++++
T Consensus 41 ~i~~~~-~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 119 (311)
T d1nr0a1 41 YTVPVG-SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 119 (311)
T ss_dssp EEEETT-CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEEECC-CCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccc
Confidence 356543 34667788999999999999999999999999999999999887654 456778899999999999999999
Q ss_pred Eec--ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCE-EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce
Q psy3053 640 GCW--DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR-LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI 716 (917)
Q Consensus 640 gs~--Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~-L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V 716 (917)
++. +..+++|++++++....+.+|.+.|++++|+|++++ +++|+.||+|++||+++. ........|...|
T Consensus 120 ~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-------~~~~~~~~~~~~i 192 (311)
T d1nr0a1 120 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFV 192 (311)
T ss_dssp EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCE
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccc-------ccccccccccccc
Confidence 886 456999999999999999999999999999998875 889999999999999865 3444556789999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 717 KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD------DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~------~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
.+++++|+++++++|+.||.|++||+.++.....+.. +|.+.|.+++|+|++++|++|+.||.|++||+++++.
T Consensus 193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 272 (311)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred cccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999999999999999999999887776642 4778999999999999999999999999999999998
Q ss_pred EEEeecCC----ceEEEEEeCCCEEEEEeCCCeEEEEECC
Q psy3053 791 VCNKVFEE----KLLCLSWAGEEKVILGGALGMVYLVDLI 826 (917)
Q Consensus 791 i~~~~~~~----~i~~l~~s~~~~lv~gs~dG~I~vwdl~ 826 (917)
+..+.... .+.++.|+++ .+++++.||.|++||..
T Consensus 273 ~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 273 EKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEECCSSGGGCEEEEEECSS-CEEEEETTCCEEEEETT
T ss_pred EEEEECCCCccceEEEEEecCC-EEEEEECCCEEEEEeCC
Confidence 88776443 3567777776 78899999999999963
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=7.2e-30 Score=280.51 Aligned_cols=255 Identities=20% Similarity=0.306 Sum_probs=225.1
Q ss_pred cccccCCcc--ccc--eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC--ceeeeeeccccceEEEEEeCCC
Q psy3053 561 SNSWCDKSI--LEP--LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG--RQERSAVLSSMTLSSLCILPDN 634 (917)
Q Consensus 561 ~~~w~~~~~--l~~--~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~~~~~~~~V~sl~~spd~ 634 (917)
..+|+-... ..+ .....+|.+.|++++|+|+|++|++|+.||.|++||+... +....+..|...+.+++|+|++
T Consensus 74 V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 153 (337)
T d1gxra_ 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS
T ss_pred EEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccc
Confidence 367874332 122 2234689999999999999999999999999999998744 4556677888899999999999
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
..+++++.|+.|++|++.+++......+|...|++++|++++..+++|+.|+.|++||+.++ .......+..
T Consensus 154 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~--------~~~~~~~~~~ 225 (337)
T d1gxra_ 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG--------RQLQQHDFTS 225 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--------EEEEEEECSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------eeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999876 3344567889
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
.|.+++|+|+++.+++|+.||.+++||+++++..... .|...|.+++|+|+|++|++++.||.|++||+.+++.+...
T Consensus 226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 303 (337)
T d1gxra_ 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ceEEEEEcccccccceecccccccccccccccccccc--ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc
Confidence 9999999999999999999999999999988776544 58899999999999999999999999999999999999998
Q ss_pred ecCCceEEEEEeCCC-EEEEEeCCCeEEEEEC
Q psy3053 795 VFEEKLLCLSWAGEE-KVILGGALGMVYLVDL 825 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl 825 (917)
.+...|.+++|++++ .+++|+.||.|++||+
T Consensus 304 ~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 899999999999875 5778888999999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.8e-30 Score=273.41 Aligned_cols=277 Identities=18% Similarity=0.276 Sum_probs=235.2
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEE
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vW 691 (917)
.....++.+|..+|++++|+|++++||+|+.||+|++||+.+++.+..+.+|.+.|.+++|++++..+++++.++.+.+|
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 692 dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
+.... ........|...+.++.++++++.+++++.|+.+.+||+++++....+. .|...+.+++|+|++..+
T Consensus 87 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 158 (317)
T d1vyhc1 87 DFQGF-------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLI 158 (317)
T ss_dssp ETTSS-------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEE
T ss_pred ccccc-------ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeecccCCCEE
Confidence 98665 2344456788899999999999999999999999999999999988887 788999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCE
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT 850 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~ 850 (917)
++++.|+.+++|+..++....... +...+.++++++++....... ............+..
T Consensus 159 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 219 (317)
T d1vyhc1 159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE-------------------ATGSETKKSGKPGPF 219 (317)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG-------------------CCSCC-------CCE
T ss_pred EEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeec-------------------cccceeeeeccCCce
Confidence 999999999999999988776654 456688888877532111000 011111222456888
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
+++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++|+.||.|++||++. ..+.++
T Consensus 220 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 285 (317)
T d1vyhc1 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285 (317)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred eEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999974 455544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-29 Score=263.93 Aligned_cols=273 Identities=19% Similarity=0.320 Sum_probs=226.2
Q ss_pred eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 616 RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
.....+...|+|+ ++|+++||+|+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.||+|++|++..
T Consensus 9 ~~~~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 9 HCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp ECCCSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred eccCCCCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence 3344566778875 568999999999999999999999999999999999999988 568999999999999999977
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEE--ecCCCCCCeEEEEEecCCCEEEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ--LSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~--l~~~h~~~V~~v~fspdg~~L~s 773 (917)
+. ....... .........+....++++..++.+.+|+..+...... ....|...+..+.+.+ ..+++
T Consensus 85 ~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~ 153 (293)
T d1p22a2 85 GE-------MLNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVS 153 (293)
T ss_dssp CC-------EEEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEE
T ss_pred cc-------ccccccc--cccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--ccccc
Confidence 62 1111212 2223345566778899999999999999987653222 2236777887777654 57889
Q ss_pred EeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEE
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTML 852 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~La 852 (917)
++.|+.+++||.++++.+.... +...+..+.+++. .+++++.||.|++||+.+.+.+....+|...+.++++++.+|+
T Consensus 154 ~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 232 (293)
T d1p22a2 154 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232 (293)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEE
T ss_pred ccCCCceeeecCCCCcEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEE
Confidence 9999999999999998887665 4456788888876 8999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECcC---------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 853 VGCWDSCVVIYDVEC---------GRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 853 sgs~DG~I~Iwdl~t---------g~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+|+.||.|++||+.+ ...+..+.+|.+.|++++|+ +.+|+|||.||+|++||
T Consensus 233 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 999999999999743 35788899999999999995 57899999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.1e-29 Score=271.08 Aligned_cols=284 Identities=17% Similarity=0.219 Sum_probs=222.9
Q ss_pred eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC
Q psy3053 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 615 ~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~ 694 (917)
..++++|...|.. ++++++++||+|+.||+|++||+.+++.+.++.+|.++|++++|+|+ .+|++|+.||+|++|+..
T Consensus 5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp EEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred cEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence 3467889888643 24567889999999999999999999999999999999999999985 689999999999999987
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC---------------------
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD--------------------- 753 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~--------------------- 753 (917)
..... .......+........+++++..+++++.||.|++||+.+.........
T Consensus 83 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 83 KGCCT-----HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp TTEEE-----EEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred ccccc-----cccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence 65210 1111222334456677888999999999999999999987654332221
Q ss_pred -CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCC-CEEEEEeCCCeEEEEECCCCEE
Q psy3053 754 -DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGE-EKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 754 -~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~-~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
.|... ...+.++++.++++..|+.+++||+.+++.+.... ....+.++.+++. ..+++++.||.|++||..++..
T Consensus 158 ~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 235 (355)
T d1nexb2 158 RGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235 (355)
T ss_dssp ECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred eecccc--ccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence 11122 23456678999999999999999999998876654 4566888888864 4688899999999999999999
Q ss_pred EEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE-EEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 831 LKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV-AWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 831 i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl-afSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+..+.+|...|.++++++++|++|+.||.|++||+.++.... ..|...+.++ ++++++.+|++| .||.|++||++.
T Consensus 236 ~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~t 312 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRS 312 (355)
T ss_dssp EEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTT
T ss_pred ccccccccccccccccccceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCC
Confidence 999999999999999999999999999999999999887554 3455666555 456777776665 589999999975
Q ss_pred c
Q psy3053 910 Y 910 (917)
Q Consensus 910 ~ 910 (917)
.
T Consensus 313 g 313 (355)
T d1nexb2 313 G 313 (355)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=7e-30 Score=284.90 Aligned_cols=260 Identities=15% Similarity=0.175 Sum_probs=212.5
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
...+|+|++|+||+++||+|+.||.|++||.++++ .+..+.+|.++|++++|+|++++|++|+.|++|++||+.++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~- 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT- 84 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc-
Confidence 34689999999999999999999999999998875 567789999999999999999999999999999999987651
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee---eEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM---TQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~---~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
........+|...|.+++|+|+++.+++|+.||.+++|++..... .......|...|.+++|+|++++|++|+
T Consensus 85 ----~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 85 ----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp ----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ----cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccc
Confidence 122334457888999999999999999999999999998876543 2333347889999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEE
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Las 853 (917)
.|+.+++||............. + ...+...+..+....+|...|.++ +|+++.|++
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~---------~-------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 218 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPT---------P-------------WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCB---------T-------------TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred cCcEEEEEeeccCccccccccc---------c-------------ccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence 9999999998654311100000 0 000123345666777899999888 668999999
Q ss_pred EeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 854 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++.||.|++||+.+++.+..+.+|..+|.+++|+|++++|++| .|+.+++|..+
T Consensus 219 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~ 272 (371)
T d1k8kc_ 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 272 (371)
T ss_dssp EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred cccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEee
Confidence 9999999999999999999999999999999999999877765 57777777654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-29 Score=268.54 Aligned_cols=279 Identities=18% Similarity=0.210 Sum_probs=223.7
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+++++++||.++|++++|+| |+||+.||+|++||+.++. ..|...|.+++++++ ..+++++.|+++++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence 67899999999999999987 9999999999999987643 468889999998865 4678999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+...+ ....+.++++++++..++++ .++.+.+|+..++ ........... +.++++++..+++
T Consensus 74 ~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~v 135 (287)
T d1pgua2 74 ITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTG--------DIIKSVRLNSP--GSAVSLSQNYVAV 135 (287)
T ss_dssp EEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTC--------CEEEEEECSSC--EEEEEECSSEEEE
T ss_pred ccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccce--------eeeeeccccce--eeeeeccCcceee
Confidence 86532 33457788888887666654 5667888987665 22223333333 3456778888888
Q ss_pred EECCC-eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE--eecCCceEEEEEeC
Q psy3053 731 GTEAG-ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVFEEKLLCLSWAG 807 (917)
Q Consensus 731 gs~dG-~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~--~~~~~~i~~l~~s~ 807 (917)
++.++ .+++|++............+...+++++|+|++.+|++++.||.|++||+.++..... ..+...+.+++|+|
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecc
Confidence 88875 6999999887777777767888999999999999999999999999999999877653 24567788888887
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcC-CeEEEEecCCCCCEEEEEE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~t-g~~l~~l~~h~~~V~slaf 886 (917)
.+.. ......++.++++|+.||+|++||+++ ++.+..+.+|.+.|++++|
T Consensus 216 ~~~~-----------------------------~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~ 266 (287)
T d1pgua2 216 AEKG-----------------------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266 (287)
T ss_dssp CC-----------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE
T ss_pred cccc-----------------------------cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEE
Confidence 6321 112245788999999999999999976 5677888899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEec
Q psy3053 887 DEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 887 Spdg~~LaSgs~DG~V~IWdl 907 (917)
+|++ .|+|+|.||+|++|++
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-EEEEEECCCeEEEEEE
Confidence 9986 6899999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.4e-28 Score=261.43 Aligned_cols=291 Identities=19% Similarity=0.341 Sum_probs=238.8
Q ss_pred EeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC
Q psy3053 607 HSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC 686 (917)
Q Consensus 607 Wd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg 686 (917)
|+..+.+..+.+++|...|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|.+.|.+++|++ ++|++|+.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTS
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecc
Confidence 556666778889999999866 4777899999999999999999999999999999999999999987 5999999999
Q ss_pred eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec
Q psy3053 687 TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE 766 (917)
Q Consensus 687 tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp 766 (917)
++++|+.... ........+...+..... ....++.+..|+.+.+|+..+++....+. .... ......+
T Consensus 78 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~--~~~~~~~ 145 (342)
T d2ovrb2 78 TLKVWNAETG-------ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLM-GHVA--AVRCVQY 145 (342)
T ss_dssp CEEEEETTTT-------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEE-CCSS--CEEEEEE
T ss_pred cccccccccc-------cceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeee-cccc--cceeecc
Confidence 9999998765 122223333444444443 45678889999999999999998877765 2222 2334456
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe
Q psy3053 767 DGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH 845 (917)
Q Consensus 767 dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis 845 (917)
....+++++.|+.+++||...+..+.... +...+.+..+++. .+++|+.||.|++||+..++.+..+.+|...+.+++
T Consensus 146 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEe
Confidence 67789999999999999999888776654 4455666677665 899999999999999999999999999999999999
Q ss_pred ecCCEEEEEeCCCeEEEEECcCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 846 FDNCTMLVGCWDSCVVIYDVECGRIVTELAG---HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 846 ~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~---h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
++++++++|+.||.|++||+...+....+.+ |...+.+++++ ++++++|+.||+|++||++. ..++.+
T Consensus 225 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~ 296 (342)
T d2ovrb2 225 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 296 (342)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence 9999999999999999999999988887765 45667777765 56999999999999999974 455554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.8e-28 Score=256.86 Aligned_cols=279 Identities=16% Similarity=0.284 Sum_probs=230.3
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
++.++....|...|+|++ +||++||||+.||+|+|||+.+++.++.+.+|..+|.+++| ++++|++|+.||.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 345566778899999865 57999999999999999999999999999999999998876 67899999999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
++..+........+..... .+.+....+++++.++.+.+|+..... ..........|...+.++.+. ...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~--~~~~~ 152 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFD--DKYIV 152 (293)
T ss_dssp ESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEEE--TTEEE
T ss_pred ccccccccccccccccccc--cccccccceeecccccceeEeeccccc----cccccccccccccccccceec--ccccc
Confidence 9999988777765554443 344456789999999999999987652 122333455677788777766 45788
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CceEEEEEeCC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-EKLLCLSWAGE 808 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-~~i~~l~~s~~ 808 (917)
+++.|+.+++||+++++.+..+. ++...+..+.++ +..+++++.||.|++||++++..+...... ..+.++..++
T Consensus 153 ~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 228 (293)
T d1p22a2 153 SASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN- 228 (293)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCS-
T ss_pred cccCCCceeeecCCCCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccc-
Confidence 99999999999999999988887 677778777665 568999999999999999999888766544 4455555444
Q ss_pred CEEEEEeCCCeEEEEECCC---------CEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 809 EKVILGGALGMVYLVDLIQ---------VQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~---------~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
..+++|+.||.|++||+.. ...+..+.+|.+.|+++++++++|++|+.||+|++||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 4899999999999999743 3578889999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.2e-28 Score=270.32 Aligned_cols=276 Identities=20% Similarity=0.271 Sum_probs=214.4
Q ss_pred EEecCCceEEEeccCCcee----eeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec-----------
Q psy3053 597 SVGRDAMLKIHSLKTGRQE----RSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA----------- 661 (917)
Q Consensus 597 sgs~Dg~I~IWd~~t~~~~----~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~----------- 661 (917)
.+..++...+|+....+.. .....|...|++++|+|||++||+|+ |++|++||+.+++.+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence 4556777888886544332 23336899999999999999999987 8999999999988776654
Q ss_pred -------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 662 -------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 662 -------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
+|...|++++|+|++++|++|+.||+|++||...+ .......+|...|.++++++++..+++|+.+
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 184 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184 (388)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccCCCCCEEEEEECCCCCcceeccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 46677999999999999999999999999998765 3445567789999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~ 813 (917)
|.+++||..+........ .+ ....++.+++ ++.+|++++.||.|++||..++........
T Consensus 185 ~~i~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------------- 245 (388)
T d1erja_ 185 RTVRIWDLRTGQCSLTLS-IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS----------------- 245 (388)
T ss_dssp SEEEEEETTTTEEEEEEE-CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred eeeeeeeccccccccccc-cc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc-----------------
Confidence 999999999988777665 33 4445555554 889999999999999999988866543221
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe------------EEEEecCCCC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR------------IVTELAGHED 879 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~------------~l~~l~~h~~ 879 (917)
......+|.+.|.++ ++++++|++|+.||.|++||+.++. .......|..
T Consensus 246 ----------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (388)
T d1erja_ 246 ----------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309 (388)
T ss_dssp ---------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred ----------------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc
Confidence 011223566667666 4467777777777777777775443 3445567899
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
.|.+++|+|++++|++|+.||.|++||++. ..+.++
T Consensus 310 ~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346 (388)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999999999999999999999999999984 455554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-28 Score=269.75 Aligned_cols=282 Identities=17% Similarity=0.146 Sum_probs=224.2
Q ss_pred ceEEEEEeCCCCEEEEEeccc-EEEEEEeccC--eeeEEeccCC-CceeEEEecC--CCCEEEEEECCCeEEEEeCCCCC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDS-CVVIYDVECG--RIVTELAGHE-DAISCVAWDE--KRKRLISGSWDCTVRVWNTGASW 697 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg-~I~Iwdl~tg--~~i~~l~~H~-~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~ 697 (917)
.+++++|+|+++.++.++.+. .|+.|+.... .....+.+|. ..|++++|+| ++.+|++|+.||+|++||+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 457889999999999887554 3566665433 3466777874 6899999998 56899999999999999986652
Q ss_pred CCccCCc-ceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE-EEE
Q psy3053 698 SHMKPSK-SLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR-VLS 773 (917)
Q Consensus 698 ~~~~~~~-~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~-L~s 773 (917)
....... .......|.++|.+++|+++++.+++++. ++.+.+|+..+++.+..+. +|...|.+++|+|++.. +++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-ecccccccccccccccceEEE
Confidence 2111111 11123467889999999999999988764 6789999999999998887 89999999999998875 678
Q ss_pred EeCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCCce----EE
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAV----LS 843 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V----~s 843 (917)
++.|+.+++||..+++...... +...+.+++|+|+ ..+++++.||.|++||+.+++.+..+.+|...+ .+
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence 9999999999998887665543 3466999999974 467889999999999999999999999887765 34
Q ss_pred Ee-ecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC--EE--EEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 844 LH-FDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA--IS--CVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 844 is-~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~--V~--slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+. +++++|++|+.||.|+|||+++++++..+..|... +. ++.|.++ .+|++|+.||.|++||+
T Consensus 258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred eeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 43 58999999999999999999999999988766543 33 3444443 48999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.9e-27 Score=260.27 Aligned_cols=277 Identities=14% Similarity=0.146 Sum_probs=221.6
Q ss_pred ceEEEEEeCCCcEEEEEecCC-ceEEEeccCC--ceeeeeecc-ccceEEEEEeC--CCCEEEEEecccEEEEEEeccCe
Q psy3053 582 AITAVAICGEGISVASVGRDA-MLKIHSLKTG--RQERSAVLS-SMTLSSLCILP--DNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg-~I~IWd~~t~--~~~~~~~~~-~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
.+++++|+|+|+.|+.++.+. .|+.|+.... .....+.+| ...|++++|+| ++.+|++|+.||+|++||+..++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 467899999999999886554 3566765443 334556666 46799999998 56799999999999999997653
Q ss_pred ee--------EEeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 656 IV--------TELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 656 ~i--------~~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
.. ..+..|.++|.+++|+++++++++++. ++.+++|+..++ .......+|...|.+++|+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~ 171 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-------NSLGEVSGHSQRINACHLKQSR 171 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-------CEEEECCSCSSCEEEEEECSSS
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc-------ccceeeeecccccccccccccc
Confidence 32 334568899999999999999988764 678999998765 2444556789999999999998
Q ss_pred CE-EEEEECCCeEEEEECCCCeeeEEecC--CCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec-C---
Q psy3053 726 NQ-LAVGTEAGELIIWSLENHLMTQQLSD--DINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF-E--- 797 (917)
Q Consensus 726 ~~-Lasgs~dG~I~iwDl~~~~~~~~l~~--~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-~--- 797 (917)
.. +++++.||.+++||....+....... .|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.. .
T Consensus 172 ~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v 251 (325)
T d1pgua1 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 251 (325)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccc
Confidence 65 67899999999999998877666542 56778999999996 68899999999999999999998877652 2
Q ss_pred -CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCce----EEEee-cCCEEEEEeCCCeEEEEEC
Q psy3053 798 -EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAV----LSLHF-DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 798 -~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V----~sis~-dg~~Lasgs~DG~I~Iwdl 865 (917)
..+.++++.+...+++++.||.|++||+.+++++..+..|...+ .++.+ .+..|++|+.||.|++||+
T Consensus 252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 23566666666689999999999999999999999887765442 34444 4568999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=3.8e-27 Score=252.53 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=199.8
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEE
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRV 690 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~v 690 (917)
|+..+.+.+|..+|++++|+|++++|++|+.||+|++||+++++....+. +|...|++++|+|++. +++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence 55678889999999999999999999999999999999999999888874 6999999999999986 566778999999
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR 770 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~ 770 (917)
|+....... ........+...+.+++++++++.+++++ ++.+.+|+... ..... ....+.+++|+|+++.
T Consensus 81 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~---~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 81 VPAGGSGVD----SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP---ISYNSSCVALSNDKQF 150 (299)
T ss_dssp ECSSSSSSC----TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE---CSSCEEEEEECTTSCE
T ss_pred eccCCcccc----ccccccccccccccccccccccccccccc-ccccccccccc--ccccc---cccccccccccccccc
Confidence 998654211 11122345677899999999999777765 56899998543 22222 3456789999999999
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC
Q psy3053 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 771 L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++++.||.+++||+++++.... ....|...|+++ ++++
T Consensus 151 l~~g~~dg~i~~~d~~~~~~~~~---------------------------------------~~~~~~~~i~~~~~~~~~ 191 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASVSEV---------------------------------------KTIVHPAEITSVAFSNNG 191 (299)
T ss_dssp EEEEETTSEEEEEEEETTEEEEE---------------------------------------EEEECSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccccc---------------------------------------cccccccccccccccccc
Confidence 99999999999999876543211 112356667666 4578
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEE---EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVT---ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~---~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++++|+.||.|++||+.++.... .+.+|..+|++++|+|++++|++|+.||.|++||++..
T Consensus 192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence 899999999999999998876553 45678999999999999999999999999999998753
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-27 Score=267.94 Aligned_cols=305 Identities=17% Similarity=0.222 Sum_probs=212.6
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce------eeeeeccccceEEEEE---eC----CCCEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ------ERSAVLSSMTLSSLCI---LP----DNCTMLV 639 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~------~~~~~~~~~~V~sl~~---sp----d~~~Las 639 (917)
....++|.+.|.++++++ ++++|+|.|++|++||..+... ......+...+..+.. .+ ++..+++
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 456689999999999865 6899999999999999765432 1112223333322221 11 2357789
Q ss_pred EecccEEEEEEeccCeeeEEe----------ccCCCceeEEEecCC-----CCEEEEEECCCeEEEEeCCCCCCCc----
Q psy3053 640 GCWDSCVVIYDVECGRIVTEL----------AGHEDAISCVAWDEK-----RKRLISGSWDCTVRVWNTGASWSHM---- 700 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l----------~~H~~~Vt~l~~spd-----~~~L~Sgs~DgtI~vWdl~~~~~~~---- 700 (917)
++.||.|++|++..+.....+ ..+...+..++|.++ +.++++++.||++++|++.......
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 999999999998754322111 124566778888765 4689999999999999975432100
Q ss_pred ---cC----CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec-----CCCCCCeEEEEEecCC
Q psy3053 701 ---KP----SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-----DDINASVNGVLFSEDG 768 (917)
Q Consensus 701 ---~~----~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-----~~h~~~V~~v~fspdg 768 (917)
.. .........+...+.+++|+|++ ++++|+.||+|++||+.+++.+..+. .+|..+|.+++|+|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 00 00111223455668999999997 88999999999999999998876554 2578899999999999
Q ss_pred CEEEEEeCCC---eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE-
Q psy3053 769 CRVLSCGNNC---MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL- 844 (917)
Q Consensus 769 ~~L~s~s~Dg---~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si- 844 (917)
++|++|+.|+ .|++||+.+++.+..+.... ........+.+|.+.|+++
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~---------------------------~~~~~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPT---------------------------HSSQASLGEFAHSSWVMSLS 296 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------------CCBSBSSCEEEEE
T ss_pred ceeeeecCCCCcceeeecccccceeeeeecccc---------------------------ccccceeeeecccCceeeec
Confidence 9999999887 48999999987765433111 0112233445788888887
Q ss_pred -eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC---------------------EEEEEEcCCC----------CE
Q psy3053 845 -HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA---------------------ISCVAWDEKR----------KR 892 (917)
Q Consensus 845 -s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~---------------------V~slafSpdg----------~~ 892 (917)
+|++++|++|+.||+|++||+++|+++.++.+|.+. +.++.|.+.+ ..
T Consensus 297 fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T d1sq9a_ 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 376 (393)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred cCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCE
Confidence 557888888888888888888888888888877544 3445554432 35
Q ss_pred EEEEeCCCcEEEEec
Q psy3053 893 LISGNLVGAPKLYAT 907 (917)
Q Consensus 893 LaSgs~DG~V~IWdl 907 (917)
+++++.|+.|++|.-
T Consensus 377 ~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 377 LCCVCLDRSIRWFRE 391 (393)
T ss_dssp EEEEETTTEEEEEEE
T ss_pred EEEEEcCCeEEEEeC
Confidence 777888888888764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.5e-28 Score=261.32 Aligned_cols=311 Identities=12% Similarity=0.084 Sum_probs=225.5
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee---eeeccccceEEEEEeCC-CCEEEEEecccEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER---SAVLSSMTLSSLCILPD-NCTMLVGCWDSCV 646 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~---~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I 646 (917)
+.++..++|++.|++|+|+|+|++||+|+.||+|+|||+.++.... ....|..+|.+++|+|+ +..|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 5677889999999999999999999999999999999998765433 33368899999999986 4589999999999
Q ss_pred EEEEeccCeeeEEeccCCCc-eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 647 VIYDVECGRIVTELAGHEDA-ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~-Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
++|+...+........+... .....+.+++..+++++.|+++++||++......... ................+.+.+
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV-KNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE-EESCSSSSSSCCCEEEEEECS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeee-cccccccccceeeeeeeeccC
Confidence 99999988777666655444 4455566788999999999999999976542111000 000011223345567788889
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEE--ecCCCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQ--LSDDINASVNGVLFS-EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC 802 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~--l~~~h~~~V~~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~ 802 (917)
..+++++.||.|++||+........ ........+.+..+. .++..+++++.||.+.+|+........... ....
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~---~~~~ 237 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS---KRFA 237 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT---TCEE
T ss_pred CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc---ccce
Confidence 9999999999999999987643322 112344555555554 467889999999999999986542211000 0000
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC
Q psy3053 803 LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA 880 (917)
Q Consensus 803 l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~ 880 (917)
...+ .......+|...+.++ +|++++|++|+.||.|++||+++++.+..+..+ ..
T Consensus 238 -----------------~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~ 294 (342)
T d1yfqa_ 238 -----------------FRCH-----RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294 (342)
T ss_dssp -----------------EECC-----CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred -----------------eeee-----eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CC
Confidence 0000 0001123566777777 678999999999999999999999999988643 34
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 881 ISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 881 V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..++|+|+|+.|++|+.|+.+++|..-
T Consensus 295 ~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 295 DSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred CEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 5567888999999999999988888763
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.5e-25 Score=242.29 Aligned_cols=257 Identities=12% Similarity=0.164 Sum_probs=208.2
Q ss_pred eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 614 QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
..+++.+|..+|.+++|+|++++||+|+.||+|++||+.+++.+..+.+|.+.|++++|+|+++++++|+.|+.+.+|+.
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
...... ........+|.....+... ..+..++.+..++....+............ .+...+....+.+.+..+++
T Consensus 127 ~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 127 KTREGN---VRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp SSSCSC---CCEEEEECCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSEEEE
T ss_pred cccccc---cccceeccccccccccccc-cccccccccccccccccccccccccccccc-ccceeEeeeccccccceeEE
Confidence 665221 1122334455555554444 445677888889999999988776666555 56677788888877777777
Q ss_pred EeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
++.|+.+++||++++ +++..+.+|...|+++ +|++++|
T Consensus 202 ~~~d~~v~i~d~~~~----------------------------------------~~~~~~~~h~~~i~~v~~~p~~~~l 241 (340)
T d1tbga_ 202 GACDASAKLWDVREG----------------------------------------MCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp EETTTEEEEEETTTT----------------------------------------EEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eecCceEEEEECCCC----------------------------------------cEEEEEeCCCCCeEEEEECCCCCEE
Confidence 777777777766554 4445566788888887 5688999
Q ss_pred EEEeCCCeEEEEECcCCeEEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 852 LVGCWDSCVVIYDVECGRIVTEL--AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~~l~~l--~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
++|+.||.|++|++.....+..+ ..|...|++++|+|++++|++|+.||.|++||+.. ..+.++
T Consensus 242 ~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 308 (340)
T d1tbga_ 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence 99999999999999998887765 45667899999999999999999999999999874 455554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=3e-27 Score=258.56 Aligned_cols=307 Identities=11% Similarity=0.040 Sum_probs=230.3
Q ss_pred EEEEeC-CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc--EEEEEEeccCeeeEEec
Q psy3053 585 AVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS--CVVIYDVECGRIVTELA 661 (917)
Q Consensus 585 sv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg--~I~Iwdl~tg~~i~~l~ 661 (917)
+-.||| ||+++|+++ +|.|.+||+.++...+. .|...|.+++|+|||+.|++++.+. .|++||.++++.. .+.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 457999 999999886 57999999988876653 5888999999999999998877653 7999999887654 567
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE---------
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT--------- 732 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs--------- 732 (917)
.|...|.+++|+|++++|++++.++.+.+|+..++ ........+...+.+++|+|+|++|+.++
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~ 155 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred CCCceEEeeeecccccccceecccccccccccccc-------ceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence 89999999999999999999999999999999876 23344556778899999999999998654
Q ss_pred -CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE-------Eee-cCCceEEE
Q psy3053 733 -EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC-------NKV-FEEKLLCL 803 (917)
Q Consensus 733 -~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~-------~~~-~~~~i~~l 803 (917)
.++.+++||+.+++..... .+...+..++|+|+|+.|++++.++.+.+||........ ... +......+
T Consensus 156 ~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (360)
T d1k32a3 156 YVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233 (360)
T ss_dssp CCEEEEEEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred ccccceeeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc
Confidence 3456999999988766554 466788999999999999999999999999976553321 111 11222222
Q ss_pred EEeCCCEEE-EEeCC-----CeEEEEECCCCEEEEEEecCCCceEEEee-----cCCEEEEEeCCCeEEEEECcCCeEEE
Q psy3053 804 SWAGEEKVI-LGGAL-----GMVYLVDLIQVQLLKQVRAHKDAVLSLHF-----DNCTMLVGCWDSCVVIYDVECGRIVT 872 (917)
Q Consensus 804 ~~s~~~~lv-~gs~d-----G~I~vwdl~~~~~i~~l~~h~~~V~sis~-----dg~~Lasgs~DG~I~Iwdl~tg~~l~ 872 (917)
.+++++..+ .+..+ ..+..++...+.. ..+..+.+.+..+.. ++.++++++.++.|++||+.+++..
T Consensus 234 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~- 311 (360)
T d1k32a3 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT- 311 (360)
T ss_dssp GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-
T ss_pred eECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-
Confidence 333332211 11111 2244444444443 334445555555522 3345788889999999999987653
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 873 ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 873 ~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
.|.+.|.+++|||||++|++++.||.|++|+++.
T Consensus 312 ---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 312 ---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345 (360)
T ss_dssp ---EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred ---EecCCcCEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 2445699999999999999999999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.2e-24 Score=240.53 Aligned_cols=256 Identities=13% Similarity=0.182 Sum_probs=190.3
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe---C----CCCEEEE
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS---K----DNNQLAV 730 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---p----dg~~Las 730 (917)
...++|.+.|.++++++ ++++|||.|++|++||..+...... .........+...+..+... + ++..+++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc-cceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 34578999999999875 7999999999999999766532111 11222233344333322221 1 2357789
Q ss_pred EECCCeEEEEECCCCeeeE-----Eec----CCCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEECCCCe-------
Q psy3053 731 GTEAGELIIWSLENHLMTQ-----QLS----DDINASVNGVLFSED-----GCRVLSCGNNCMLNVYDLTTGM------- 789 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~-----~l~----~~h~~~V~~v~fspd-----g~~L~s~s~Dg~I~iwDl~tg~------- 789 (917)
++.||.|++|++....... ... ..+...+..+++.++ +.++++++.||.+++|++....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 9999999999875432111 111 123456778888775 4678999999999999974221
Q ss_pred -----E--E-EE----eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEE------ecCCCceEEE--eecCC
Q psy3053 790 -----Q--V-CN----KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQV------RAHKDAVLSL--HFDNC 849 (917)
Q Consensus 790 -----~--i-~~----~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l------~~h~~~V~si--s~dg~ 849 (917)
. . .. ......+.++++++++.+++|+.||.|++||+.+++++..+ .+|..+|.++ +|+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 0 1 11 11234588999999999999999999999999999887655 4688999998 67999
Q ss_pred EEEEEeCCC---eEEEEECcCCeEEEEec-------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceE
Q psy3053 850 TMLVGCWDS---CVVIYDVECGRIVTELA-------------GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLL 912 (917)
Q Consensus 850 ~Lasgs~DG---~I~Iwdl~tg~~l~~l~-------------~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll 912 (917)
+|++|+.|+ .|++||+++++.+..+. +|.+.|++++|+|++++|+|||.||+|++||++. ..+
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence 999999987 49999999999888764 7999999999999999999999999999999984 466
Q ss_pred EEEe
Q psy3053 913 YVLT 916 (917)
Q Consensus 913 ~~Lt 916 (917)
.+|+
T Consensus 325 ~~l~ 328 (393)
T d1sq9a_ 325 TTLN 328 (393)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6553
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=3.3e-24 Score=229.91 Aligned_cols=256 Identities=14% Similarity=0.086 Sum_probs=192.3
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEEC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTE 733 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~ 733 (917)
+.++..++|.+.|++|+|+|++++|++||.||+|++||+.... .........+|..+|.+++|+|++ ..+++|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~----~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~ 77 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC----cceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence 4567788999999999999999999999999999999987651 112334455799999999999864 58999999
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE----EEee---cCCceEEEEEe
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV----CNKV---FEEKLLCLSWA 806 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i----~~~~---~~~~i~~l~~s 806 (917)
||.|.+|++..+.........+........+.+++..+++++.++.+++||++++... .... ......++.+.
T Consensus 78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
T d1yfqa_ 78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence 9999999999888877776555566667777888999999999999999998643221 1111 11122233332
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCEEE---EEEecCCCceEEE---eecCCEEEEEeCCCeEEEEECcCCeE---------
Q psy3053 807 -GEEKVILGGALGMVYLVDLIQVQLL---KQVRAHKDAVLSL---HFDNCTMLVGCWDSCVVIYDVECGRI--------- 870 (917)
Q Consensus 807 -~~~~lv~gs~dG~I~vwdl~~~~~i---~~l~~h~~~V~si---s~dg~~Lasgs~DG~I~Iwdl~tg~~--------- 870 (917)
....+++++.+|.|++||+...... .....+...+.+. ..++..+++++.||.+.+|+......
T Consensus 158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence 2347899999999999999765432 2223344444444 34788999999999999999764321
Q ss_pred EEE------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEE
Q psy3053 871 VTE------LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYV 914 (917)
Q Consensus 871 l~~------l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~ 914 (917)
... ..+|...|++++|+|++++||||+.||.|++||++.. .+..
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~ 288 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEE
Confidence 111 1346678999999999999999999999999999854 4443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=2.8e-23 Score=235.82 Aligned_cols=318 Identities=8% Similarity=0.014 Sum_probs=232.1
Q ss_pred EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE-----eccCCCcee
Q psy3053 594 SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE-----LAGHEDAIS 668 (917)
Q Consensus 594 ~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~-----l~~H~~~Vt 668 (917)
++++++.||+|++||+.+++.+.++..+. .+..++|+|||+++++++.||+|++||+.+++.... ..+|.+.+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 56778889999999999999999998774 589999999999999999999999999998875432 235777788
Q ss_pred EEEecCCCCEEEE-EECCCeEEEEeCCCCCCCccCC----cceeeeccCCCceEEEEEeCCCCEEEEEEC-CCeEEEEEC
Q psy3053 669 CVAWDEKRKRLIS-GSWDCTVRVWNTGASWSHMKPS----KSLVSQLDLDNRIKCLAISKDNNQLAVGTE-AGELIIWSL 742 (917)
Q Consensus 669 ~l~~spd~~~L~S-gs~DgtI~vWdl~~~~~~~~~~----~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl 742 (917)
+++|+|||+++++ +..++++++||..++....... ........+......+..++++..++.... .+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 8889999998754 5588999999988763111000 000011234455667778888877766554 366777777
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCC-----ceEEEEEeCCCEEE--EE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEE-----KLLCLSWAGEEKVI--LG 814 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~-----~i~~l~~s~~~~lv--~g 814 (917)
............+...+..++++|++++++++. .+..+.+++..+++......... ..........+... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 665543332225678899999999999888776 45679999999998887665432 12222222332333 23
Q ss_pred eCCCeEEEEECCC-------CEEEEEEecCCCceEEE--eecCCEEEE-------EeCCCeEEEEECcCCeEEEEe----
Q psy3053 815 GALGMVYLVDLIQ-------VQLLKQVRAHKDAVLSL--HFDNCTMLV-------GCWDSCVVIYDVECGRIVTEL---- 874 (917)
Q Consensus 815 s~dG~I~vwdl~~-------~~~i~~l~~h~~~V~si--s~dg~~Las-------gs~DG~I~Iwdl~tg~~l~~l---- 874 (917)
..++.+.+|+... ++....+.+|...+..+ +|+++++++ ++.|++|+|||+++++...++
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 4577888887654 47888999999888766 889999995 556889999999998765544
Q ss_pred -----cCCCCCEEEEEEcCCCCEEEE-E----eCCCcEEEEecCcceE
Q psy3053 875 -----AGHEDAISCVAWDEKRKRLIS-G----NLVGAPKLYATEFYLL 912 (917)
Q Consensus 875 -----~~h~~~V~slafSpdg~~LaS-g----s~DG~V~IWdl~~~ll 912 (917)
..|...|.+++|||||++++. + +.+|.|+|||..+..+
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence 245667999999999997743 3 3688899999987643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=4.3e-24 Score=233.25 Aligned_cols=303 Identities=12% Similarity=0.008 Sum_probs=228.8
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCC--ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDA--MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg--~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las 639 (917)
.+|+...+ +..+ .+|.+.|.+++|+|||+.|++++.+. .|++||..+++.. .+..|...+.+++|+|++++|++
T Consensus 27 ~v~d~~~~-~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~ 102 (360)
T d1k32a3 27 FIQDVSGT-YVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVV 102 (360)
T ss_dssp EEECTTSS-BEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEE
T ss_pred EEEECCCC-cEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccce
Confidence 46665433 2232 27999999999999999998877654 7999999887654 56678889999999999999999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeCCCCCCCccCCcceeee
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++ .++.+++||..++ .....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~ 174 (360)
T d1k32a3 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------KIFAA 174 (360)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------EEEEC
T ss_pred eccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC--------ceeee
Confidence 99999999999999999999999999999999999999998654 3457999998775 33445
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee-------EEecCCCCCCeEEEEEecCCCEEEEEeCCC----
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT-------QQLSDDINASVNGVLFSEDGCRVLSCGNNC---- 778 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~-------~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---- 778 (917)
..+...+.+++|+|+|+.|++++.++.+.+||....... ..+. .+...+..+.+++++..++++..+.
T Consensus 175 ~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP-LIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEE-SSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEe-cccCccccceECCCcCcccccceeecccc
Confidence 567778899999999999999999999999997654322 1222 3444555566777776666554332
Q ss_pred -eEEEEECCCCeEEEEeecCCceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 779 -MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 779 -~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
.+..++...+.........+.+..+.+...+ .++.++.++.+++||+.+++... |.+.|.++ +|||++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~v~~~~~SpDG~~l 329 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTV 329 (360)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEEEEEEEEECTTSCEE
T ss_pred cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE----ecCCcCEEEECCCCCEE
Confidence 2444445555544444455555555554332 24567788999999999876532 23346555 7899999
Q ss_pred EEEeCCCeEEEEECcCCeEEEEecCCCCCE
Q psy3053 852 LVGCWDSCVVIYDVECGRIVTELAGHEDAI 881 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V 881 (917)
++++.||.|++||+++++...++..+..++
T Consensus 330 ~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 330 MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred EEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 999999999999999998888777666554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=1.2e-22 Score=231.45 Aligned_cols=319 Identities=10% Similarity=-0.027 Sum_probs=228.3
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee--eEE---eccCC
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI--VTE---LAGHE 664 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~--i~~---l~~H~ 664 (917)
++.-++++.+.||+|.+||..+++.+..+..+. .+..++|+|||+++++++.||.+++||+.+++. ... ..+|.
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 333446888999999999999999999998774 689999999999999999999999999988763 222 33577
Q ss_pred CceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCC----cceeeeccCCCceEEEEEeCCCCEEE-EEECCCeEE
Q psy3053 665 DAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPS----KSLVSQLDLDNRIKCLAISKDNNQLA-VGTEAGELI 738 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~----~~~~~~~~h~~~V~~l~~spdg~~La-sgs~dG~I~ 738 (917)
+.+.+.+|+|||++| ++++.+++|++||..++....... ........+......+.++++|..++ +...++.|.
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~ 188 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 188 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence 777788889999986 678889999999998763111000 00001234566778899999998764 556679999
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeEEEEeecC------CceEEEEEeCCCEE
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGMQVCNKVFE------EKLLCLSWAGEEKV 811 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~~i~~~~~~------~~i~~l~~s~~~~l 811 (917)
+||..+++........+...+.+++|+|+|+++++++. ++.+.++|..+++.+...... .......+...+.+
T Consensus 189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 268 (432)
T d1qksa2 189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 268 (432)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence 99998876554433245677899999999998877765 558999999999887765533 22333444444444
Q ss_pred EEEeC--CCeEEEEECCCC-------EEEEEEecCCC----------c--e-------------EEE-eecCCEEEEEeC
Q psy3053 812 ILGGA--LGMVYLVDLIQV-------QLLKQVRAHKD----------A--V-------------LSL-HFDNCTMLVGCW 856 (917)
Q Consensus 812 v~gs~--dG~I~vwdl~~~-------~~i~~l~~h~~----------~--V-------------~si-s~dg~~Lasgs~ 856 (917)
..... ++.+.+|+.... +....+..+.+ . + .++ .||++.+++++.
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~ 348 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 348 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred ecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhccccc
Confidence 44333 667888876432 23333322211 1 0 011 267888888888
Q ss_pred CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCcceE
Q psy3053 857 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN-----LVGAPKLYATEFYLL 912 (917)
Q Consensus 857 DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs-----~DG~V~IWdl~~~ll 912 (917)
|+.+++|++.++.. +..|...|.+++|||||++++.+. .+|.|.|||..+..+
T Consensus 349 d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 349 DPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp CCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 99999998765532 335777899999999999886553 468899999987755
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.6e-22 Score=215.02 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=190.3
Q ss_pred CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 654 GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 654 g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
+++++++.||.++|++++|+| |+||+.||+|++||+.++ ...|...|.++++++++ .+++++.
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------------~~~h~~~V~~~~~~~~~-~~~s~s~ 65 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------------HQDHSNLIVSLDNSKAQ-EYSSISW 65 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------------ECCCCSCEEEEECCSTT-CCEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------------CCCCCCCEEEEEecCCC-eEEEEee
Confidence 467889999999999999987 999999999999997653 34788899999998764 5789999
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~ 813 (917)
|+++++|++...+ ....+..+++++++..++++ .++.+.+|+..++..+..........+++.+++ .+++
T Consensus 66 D~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 135 (287)
T d1pgua2 66 DDTLKVNGITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN-YVAV 135 (287)
T ss_dssp TTEEEETTEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEEEECSS-EEEE
T ss_pred ccccccccccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccceeeeeeccCc-ceee
Confidence 9999999875421 34567788899888666654 566789999999999988888888888877776 6666
Q ss_pred EeCC-CeEEEEECCCCEEEEEEe-cCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEE-EecCCCCCEEEEEEcC
Q psy3053 814 GGAL-GMVYLVDLIQVQLLKQVR-AHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDE 888 (917)
Q Consensus 814 gs~d-G~I~vwdl~~~~~i~~l~-~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~-~l~~h~~~V~slafSp 888 (917)
++.+ +.+++|++...+....+. .|...++++ ++++.+|++|+.||.|++||+.++.... .+.+|..+|.+++|+|
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p 215 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred eccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecc
Confidence 6666 579999998777666654 477888888 6789999999999999999999998765 4678999999999987
Q ss_pred C----------CCEEEEEeCCCcEEEEecCc
Q psy3053 889 K----------RKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 889 d----------g~~LaSgs~DG~V~IWdl~~ 909 (917)
+ +.+|++|+.||+|++|+++.
T Consensus 216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred cccccccccCCCCeeEeecCCCeEEEEECCC
Confidence 5 46899999999999999864
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=5.3e-20 Score=195.22 Aligned_cols=267 Identities=10% Similarity=0.139 Sum_probs=210.7
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI 716 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V 716 (917)
++++.|++|.+||+++++.++++... ..+..++|+|+|++|+ +++.++.|.+||+.++ ...........+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--------~~~~~~~~~~~~ 76 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAGSSP 76 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECSSSE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--------ceeeeeeccccc
Confidence 45678999999999999999988754 4578999999999874 6668899999999876 222333344567
Q ss_pred EEEEEeCCCCEEEE-EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeEEEEe
Q psy3053 717 KCLAISKDNNQLAV-GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 717 ~~l~~spdg~~Las-gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg~~i~~~ 794 (917)
..+++++++..+++ +..++.+.+|+..+++....+. +.....+++++|+|..++.+ ..++.+.+|+..++......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence 89999999986655 5567789999999998888876 45677899999999987654 56788999999999999988
Q ss_pred ecCCceEEEEEeCCCE-EEEEe-CCCeEEEEECCCCEEEEEEecCCCceE-EEeecCCEEEEEeC---CCeEEEEECcCC
Q psy3053 795 VFEEKLLCLSWAGEEK-VILGG-ALGMVYLVDLIQVQLLKQVRAHKDAVL-SLHFDNCTMLVGCW---DSCVVIYDVECG 868 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~~~~~i~~l~~h~~~V~-sis~dg~~Lasgs~---DG~I~Iwdl~tg 868 (917)
.....+.++.+++++. +++++ ..+.+.+|+....+.......+..+.. .+++++..+++++. ++.|.+||+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence 8888899999987653 44444 457888899888888777765554432 23778888766543 468999999999
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcc-eEEEEe
Q psy3053 869 RIVTELAGHEDAISCVAWDEKRKRL-ISGNLVGAPKLYATEFY-LLYVLT 916 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpdg~~L-aSgs~DG~V~IWdl~~~-ll~~Lt 916 (917)
+.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+++. ++.++.
T Consensus 235 ~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 235 KITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999888754 567999999999987 57778999999999754 566553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=2.4e-19 Score=190.08 Aligned_cols=268 Identities=14% Similarity=0.163 Sum_probs=215.6
Q ss_pred EEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEeccCCCceeEEEecC
Q psy3053 596 ASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 596 asgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp 674 (917)
++++.|++|.+||+.+++.++++.... ....++++|||++|+ +++.++.|++||+.+++.+..+..|.. +..+++++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccc
Confidence 456789999999999999998887654 457899999999875 566789999999999999999987764 68899999
Q ss_pred CCCEEEE-EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE-EECCCeEEEEECCCCeeeEEec
Q psy3053 675 KRKRLIS-GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV-GTEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 675 d~~~L~S-gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las-gs~dG~I~iwDl~~~~~~~~l~ 752 (917)
++..++. +..++.+.+|+..++ .......+...+.+++++|++..+++ +..++.+.+|+..++.....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSN--------TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTT--------EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccceeeecccccc--------eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc
Confidence 9886654 556789999998765 33444456677889999999987755 4567889999999999888876
Q ss_pred CCCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEe---CCCeEEEEECCC
Q psy3053 753 DDINASVNGVLFSEDGCRVLSCGNN-CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGG---ALGMVYLVDLIQ 827 (917)
Q Consensus 753 ~~h~~~V~~v~fspdg~~L~s~s~D-g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs---~dG~I~vwdl~~ 827 (917)
+...+..++++|++..+++++.+ +.+.+|+...............+..+++++++. +++++ .++.|.+||+.+
T Consensus 156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 156 --VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp --CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred --cCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence 45668899999999988887765 678888888888888787888888888887654 33332 347899999999
Q ss_pred CEEEEEEecCCCceEEE--eecCCEE-EEEeCCCeEEEEECcCCeEEEEecC
Q psy3053 828 VQLLKQVRAHKDAVLSL--HFDNCTM-LVGCWDSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 828 ~~~i~~l~~h~~~V~si--s~dg~~L-asgs~DG~I~Iwdl~tg~~l~~l~~ 876 (917)
++.+..+..+. .+.++ +|||++| ++++.|++|++||+++++.+.++..
T Consensus 234 ~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 234 NKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 99998887544 45555 7799986 5677899999999999999988863
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=5.4e-21 Score=205.94 Aligned_cols=292 Identities=11% Similarity=0.030 Sum_probs=212.5
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeecc--ccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeEEeccCCC----
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLS--SMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHED---- 665 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~--~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H~~---- 665 (917)
.++++++.|++|.+||+.+++.+..+..+ ...+.+++++|||+++ ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 47999999999999999999999888764 3457899999999987 5667899999999999999888876543
Q ss_pred -ceeEEEecCCCCEEEEEEC------------CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 666 -AISCVAWDEKRKRLISGSW------------DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 666 -~Vt~l~~spd~~~L~Sgs~------------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.+..++|+|+++.+++++. ++.+.+||..++ .......+...+.+++++|+|+++++++
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--------SRRKAFEAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--------EEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC--------eEEEeccccCCceEEEEcCCCCEEEEEc
Confidence 3557899999999988764 567888888765 3333445566788999999999999886
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
. .+.+||..+++....+.. ........+++++..+...... +....++. .........
T Consensus 154 ~--~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 212 (337)
T d1pbyb_ 154 R--DLHVMDPEAGTLVEDKPI--QSWEAETYAQPDVLAVWNQHESSGVMATPFY-----------------TARKDIDPA 212 (337)
T ss_dssp S--SEEEEETTTTEEEEEECS--TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEE-----------------EEBTTSCTT
T ss_pred C--CcceeeeecCcEEEEeec--CCccccceecCCcceeeccccccceeeeeee-----------------eeeecccee
Confidence 4 477899999988887762 2222233445555443322222 22221111 000011122
Q ss_pred EEEeCCCeEEEEECCCCEEEEE-EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQ-VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~-l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp 888 (917)
..+..++.+.+|+..++..... +..+...+.++ ++++.+++++ ++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~ 289 (337)
T d1pbyb_ 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVST 289 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT
T ss_pred eecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECC
Confidence 2334456788999988875543 44555555555 5677777655 5899999999999999886 567789999999
Q ss_pred CCCEEEEEeCCCcEEEEecCc-ceEEEEe
Q psy3053 889 KRKRLISGNLVGAPKLYATEF-YLLYVLT 916 (917)
Q Consensus 889 dg~~LaSgs~DG~V~IWdl~~-~ll~~Lt 916 (917)
||++|++++.||.|+|||+++ ..+..+.
T Consensus 290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 290 DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 999999999999999999984 5666664
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=1.5e-20 Score=203.25 Aligned_cols=305 Identities=11% Similarity=0.081 Sum_probs=221.7
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeEEeccC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVTELAGH 663 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H 663 (917)
++++++++++++++.|++|.+||+.+++.++++.. +.....+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 57899999999999999999999999999988875 45567899999999987 45567899999999999988776543
Q ss_pred C------CceeEEEecCCCCEEEEEE------------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 664 E------DAISCVAWDEKRKRLISGS------------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 664 ~------~~Vt~l~~spd~~~L~Sgs------------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
. ..+..++++|||+++++++ .++.+.+|+..++... ...........+..+.+++++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-----KPVRTFPMPRQVYLMRAADDG 156 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-----CCSEEEECCSSCCCEEECTTS
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee-----eEEEeeeccCceEEEEecCCC
Confidence 2 2456899999999988775 4677888987665211 111112233456667777777
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLS 804 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~ 804 (917)
..+++ ++.+.+|++.+++....+. .......+.++|++..++... .++.+.+++.... .
T Consensus 157 ~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 216 (346)
T d1jmxb_ 157 SLYVA---GPDIYKMDVKTGKYTVALP--LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR---------------F 216 (346)
T ss_dssp CEEEE---SSSEEEECTTTCCEEEEEC--STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE---------------C
T ss_pred EEEEe---CCcceEEEccCCCEEEEEe--cCCCccceEEeccccEEEEEecCCCceEeeeeeee---------------e
Confidence 76654 3568999999999888876 334556677888887665443 3445555442110 0
Q ss_pred EeCCCEEEEEeCCCeEEEEECCCCEEEEE-EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE
Q psy3053 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQ-VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881 (917)
Q Consensus 805 ~s~~~~lv~gs~dG~I~vwdl~~~~~i~~-l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V 881 (917)
......+.++...+.+.+||..++..... ...|...+.++ ++++..++++. ++.|.+||..+++.+..+. +...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~ 294 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTY 294 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCC
T ss_pred ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCE
Confidence 01111344555667899999998876544 45677776666 55666676655 4579999999999988876 45578
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEEeC
Q psy3053 882 SCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVLTV 917 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~Ltv 917 (917)
.+++|||||++|++++.||.|+|||+++ ..+.++.+
T Consensus 295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 9999999999999999999999999985 46666653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=1e-19 Score=206.04 Aligned_cols=318 Identities=11% Similarity=0.048 Sum_probs=220.7
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-----eccccceEEEEEeCCCCE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-----VLSSMTLSSLCILPDNCT 636 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-----~~~~~~V~sl~~spd~~~ 636 (917)
.+||..+. +.+..+..|. .+.+++|||||+++++++.||+|++||+.+++..... ..|...+.+++|+|||++
T Consensus 45 ~vwD~~t~-~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~ 122 (426)
T d1hzua2 45 ALVDGDSK-KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122 (426)
T ss_dssp EEEETTTC-SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred EEEECCCC-cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE
Confidence 58887654 7778888775 5899999999999999999999999999988754332 245555667788899998
Q ss_pred EEEE-ecccEEEEEEeccCeeeEEeccCCCceeEEEecC-----------CCCEEEEEECC-CeEEEEeCCCCCCCccCC
Q psy3053 637 MLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-----------KRKRLISGSWD-CTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 637 Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp-----------d~~~L~Sgs~D-gtI~vWdl~~~~~~~~~~ 703 (917)
++++ ..++.+.+||..++.....+.+|...+...++.+ ++..++....+ +.+.+++.... .
T Consensus 123 l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~------~ 196 (426)
T d1hzua2 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI------D 196 (426)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS------S
T ss_pred EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc------c
Confidence 7555 5789999999999998888877665554444444 44443333322 33434443322 1
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCC-CCCCeEEEEEecCCC-EEE--EEeCCC
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDD-INASVNGVLFSEDGC-RVL--SCGNNC 778 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~-h~~~V~~v~fspdg~-~L~--s~s~Dg 778 (917)
.......++...+..++++|++++++++. .+..+.+++..+++.+.....+ .........+...+. .+. +.+.|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 276 (426)
T d1hzua2 197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDG 276 (426)
T ss_dssp SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTC
T ss_pred ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCc
Confidence 12233456778899999999999887776 4567899999999888776522 222233344444332 222 233577
Q ss_pred eEEEEECCCC-------eEEEEee-cCCceEEEEEeCCCEEEEE--------eCCCeEEEEECCCCEEEEEEe-------
Q psy3053 779 MLNVYDLTTG-------MQVCNKV-FEEKLLCLSWAGEEKVILG--------GALGMVYLVDLIQVQLLKQVR------- 835 (917)
Q Consensus 779 ~I~iwDl~tg-------~~i~~~~-~~~~i~~l~~s~~~~lv~g--------s~dG~I~vwdl~~~~~i~~l~------- 835 (917)
.+.+|+.... +....+. +...+..++++|++..++. ..+++|++||+.+++...++.
T Consensus 277 ~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~ 356 (426)
T d1hzua2 277 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 356 (426)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred eEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcc
Confidence 8888876542 4444443 4567899999998876653 346899999999987655442
Q ss_pred --cCCCceEEE--eecCCEEEEE-----eCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEE
Q psy3053 836 --AHKDAVLSL--HFDNCTMLVG-----CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 836 --~h~~~V~si--s~dg~~Lasg-----s~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~L 893 (917)
.|...|.++ +|||+.++.+ +.+|.|+|||.++++....+.++. .++|+|++-
T Consensus 357 ~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 357 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 345567765 7899977543 357899999999999999998775 345777663
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=2.1e-19 Score=204.37 Aligned_cols=304 Identities=8% Similarity=-0.010 Sum_probs=202.7
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee--ee---eccccceEEEEEeCCCCE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER--SA---VLSSMTLSSLCILPDNCT 636 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~--~~---~~~~~~V~sl~~spd~~~ 636 (917)
.+||..+ .+.+..+..|. .+..++|||||+++++++.||++++||+.+++... .+ ..+...+.+.+|+|||++
T Consensus 45 ~v~D~~t-~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~ 122 (432)
T d1qksa2 45 ALIDGST-YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122 (432)
T ss_dssp EEEETTT-CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred EEEECCC-CcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence 5787554 46677777774 69999999999999999999999999998876432 22 234455666678889997
Q ss_pred E-EEEecccEEEEEEeccCeeeEEeccC-----------CCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCC
Q psy3053 637 M-LVGCWDSCVVIYDVECGRIVTELAGH-----------EDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 637 L-asgs~Dg~I~Iwdl~tg~~i~~l~~H-----------~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
| ++++.+++|++||..+++.+..+..| ......+.+++++..+ ++.+.++.|.+||..+..
T Consensus 123 l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~------ 196 (432)
T d1qksa2 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN------ 196 (432)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS------
T ss_pred EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC------
Confidence 6 67888999999999999988877653 3456678899988876 456677999999987641
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEecCC----CCCCeEEEEEecCCCEEEEEe-CC
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLSDD----INASVNGVLFSEDGCRVLSCG-NN 777 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~----h~~~V~~v~fspdg~~L~s~s-~D 777 (917)
........+...+.+++++|+|+++++++. ++.+.++|..+++....+..+ +........+...+...++.. .+
T Consensus 197 ~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~ 276 (432)
T d1qksa2 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 276 (432)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCC
Confidence 112233456677899999999998877765 457889999888777665421 222333333333333333332 25
Q ss_pred CeEEEEECCCCe-------EEEEeecC-Cc-------------------------eEEEE-EeCCCEEEEEeCCCeEEEE
Q psy3053 778 CMLNVYDLTTGM-------QVCNKVFE-EK-------------------------LLCLS-WAGEEKVILGGALGMVYLV 823 (917)
Q Consensus 778 g~I~iwDl~tg~-------~i~~~~~~-~~-------------------------i~~l~-~s~~~~lv~gs~dG~I~vw 823 (917)
+.+.+|+..... ........ +. ..+++ ++.. .+++++.|+.+++|
T Consensus 277 ~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~-~la~~s~d~~~k~w 355 (432)
T d1qksa2 277 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK-AMTGDGSDPEFKTL 355 (432)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG-GCCCSSSCCCEEEE
T ss_pred ceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEech-hhcccccCCceEec
Confidence 566666654321 11111100 00 00111 2222 45566677777777
Q ss_pred ECCCCEEEEEEecCCCceEEE--eecCCEEEEEe-----CCCeEEEEECcCCeEEEEecCC
Q psy3053 824 DLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGC-----WDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 824 dl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs-----~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
++.++. .+..|...+.++ ++||++++++. .+|.|.|||..++++...+++.
T Consensus 356 ~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 356 PIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 764432 123466667776 77999886654 4689999999999998888764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=5.8e-17 Score=178.06 Aligned_cols=305 Identities=9% Similarity=-0.035 Sum_probs=214.0
Q ss_pred eccCCcceEEEEEeCCCcEEEEEe-----cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe---------
Q psy3053 576 CHSHKEAITAVAICGEGISVASVG-----RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC--------- 641 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs--------- 641 (917)
...|.+++.+++++|||+.++... .++.|.+||..+++.+..+..+..+ .++|+|||+++++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence 356888999999999999987653 3457999999999999887765543 789999999998875
Q ss_pred -cccEEEEEEeccCeeeEEeccCCCce-------eEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 642 -WDSCVVIYDVECGRIVTELAGHEDAI-------SCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 642 -~Dg~I~Iwdl~tg~~i~~l~~H~~~V-------t~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
.++.|.+||..+++.+..+..+.... ..+.|+++++.++... .++.+.+|+.... . ...
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~--------~---~~~ 162 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS--------S---DDQ 162 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC--------e---EEE
Confidence 46789999999999988887766544 4467888888766554 3567888887654 1 123
Q ss_pred CCCceEEEEEeCCCCEE-EEEECCCeEEEEECCCCeeeEEecC-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 712 LDNRIKCLAISKDNNQL-AVGTEAGELIIWSLENHLMTQQLSD-----DINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 712 h~~~V~~l~~spdg~~L-asgs~dG~I~iwDl~~~~~~~~l~~-----~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
+.....++.++|+++.+ ++++.||.+.+|+...+........ ........+.+++++ .++..+.++.+.+|+.
T Consensus 163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~ 241 (373)
T d2madh_ 163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADI 241 (373)
T ss_pred EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEc
Confidence 33456788999998654 6788999999999998877665541 111223345555555 4456667889999998
Q ss_pred CCCeEEEEeecC---CceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 786 TTGMQVCNKVFE---EKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 786 ~tg~~i~~~~~~---~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
.++......... .......+.+.. ..++.+.++ ..+.....++..+++...++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------------------~~~~~~~~~~~~~~~~~~~~~v~ 301 (373)
T d2madh_ 242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS--------------------DGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC--------------------CeEEEecCCCceEEeecCCCeEE
Confidence 877554332211 112222222211 112222222 12222244566677888889999
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCE--EEEEeCCCcEEEEecC-cceEEEE
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKR--LISGNLVGAPKLYATE-FYLLYVL 915 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~--LaSgs~DG~V~IWdl~-~~ll~~L 915 (917)
+||..+++.+..+. +...+.+++|+|||+. +++++.|+.|++||+. +..+.++
T Consensus 302 ~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 302 SVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 99999999998876 5677899999999984 4688999999999998 4566655
|
| >d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: PreBEACH PH-like domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.4e-19 Score=159.35 Aligned_cols=93 Identities=25% Similarity=0.336 Sum_probs=84.7
Q ss_pred ceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCC-------------CCceEEEEeccccceeeeccccCcceEEEEE
Q psy3053 157 KVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNI-------------EPHKLLKVRLAGIKRIIRRRFLLQQVGIEIY 223 (917)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~-------------~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~ 223 (917)
++.++++|++|+|+.+.+|+|.||++.|||++.+.. ..++..+|++++|++|++|||+||++|||||
T Consensus 2 pv~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif 81 (110)
T d1t77a2 2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF 81 (110)
T ss_dssp CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEE
Confidence 578999999999999999999999999999986532 2345679999999999999999999999999
Q ss_pred EecCCCceeEEEecCChhhHHHHHHHHhC
Q psy3053 224 FKDLEPVKYLYLTLKTQGARDTLYNALLD 252 (917)
Q Consensus 224 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (917)
+.|| +++||+|.+++.|++++++|.+
T Consensus 82 ~~~~---~s~~~~F~~~~~~~~v~~~l~~ 107 (110)
T d1t77a2 82 MANR---VAVMFNFPDPATVKKVVNFLPR 107 (110)
T ss_dssp ETTS---CEEEEECSSHHHHHHHHHHSCS
T ss_pred EcCC---cEEEEEeCCHHHHHHHHHhccc
Confidence 9998 8999999999999999999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=8.5e-17 Score=172.52 Aligned_cols=269 Identities=16% Similarity=0.125 Sum_probs=190.8
Q ss_pred ccccCCccccceeeecc--CCcceEEEEEeCCCcEEE-EEecCCceEEEeccCCceeeeeeccc-----cceEEEEEeCC
Q psy3053 562 NSWCDKSILEPLHFCHS--HKEAITAVAICGEGISVA-SVGRDAMLKIHSLKTGRQERSAVLSS-----MTLSSLCILPD 633 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~--H~~~Vtsv~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~~~~~~-----~~V~sl~~spd 633 (917)
.+||..+ .+.+..+.. +...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+. ..+..++++|+
T Consensus 14 ~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~d 92 (337)
T d1pbyb_ 14 VVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPD 92 (337)
T ss_dssp EEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTT
T ss_pred EEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCC
Confidence 4676544 355666654 445688999999999874 56679999999999999988776543 33567899999
Q ss_pred CCEEEEEec------------ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 634 NCTMLVGCW------------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 634 ~~~Lasgs~------------Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
++.+++++. ++.+.+||..+++....+.. ...+.+++|+|+++++++++.+ +.+||..++.....
T Consensus 93 g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 93 GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVED 169 (337)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEE
T ss_pred CcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEE
Confidence 999988764 56789999999998888874 4568899999999999998654 67899876521000
Q ss_pred ------CCc-------ceeeec-cCCCc--eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEe
Q psy3053 702 ------PSK-------SLVSQL-DLDNR--IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFS 765 (917)
Q Consensus 702 ------~~~-------~~~~~~-~h~~~--V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fs 765 (917)
... ...... ..... ........+......++.++.+.+|+..++.........+...+..++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (337)
T d1pbyb_ 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred eecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence 000 000000 00000 11111112222223334456799999998877665444677788899999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEec
Q psy3053 766 EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 766 pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~ 836 (917)
+++..++++ ++.+++||+.+++.+........+.++++++++. +++++.+|.|.+||..+++.+.++..
T Consensus 250 ~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 250 PAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 999988766 5789999999999998888888888888887764 56777788888888888887777653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=9.8e-16 Score=164.47 Aligned_cols=269 Identities=10% Similarity=0.090 Sum_probs=183.0
Q ss_pred EEEEEecccEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
.+++++.|++|++|++++...+.. ...|.+.+.+++|+|||++|++++ .|+.|.+|++...... ........+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~----~~~~~~~~~ 81 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----LTFAAESAL 81 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----EEEEEEEEC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc----EEEeeeccc
Confidence 456777899999999976543322 235889999999999999996655 5899999998765211 122223345
Q ss_pred CCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCe
Q psy3053 713 DNRIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGM 789 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~ 789 (917)
...+..++|+|||+++++++. ++.+.+|+........... ..+...+.++.++|+++.+++++. +..+.+|+.....
T Consensus 82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence 566788999999999998875 6789999887765444332 245677889999999998887774 4579999986653
Q ss_pred EEE-------EeecCCceEEEEEeCCCEEE--EEeCCCeEEEEECCCC----EEEEEEec------CCCce--EEEeecC
Q psy3053 790 QVC-------NKVFEEKLLCLSWAGEEKVI--LGGALGMVYLVDLIQV----QLLKQVRA------HKDAV--LSLHFDN 848 (917)
Q Consensus 790 ~i~-------~~~~~~~i~~l~~s~~~~lv--~gs~dG~I~vwdl~~~----~~i~~l~~------h~~~V--~sis~dg 848 (917)
... ..........+++++++..+ +....+...+++.... ........ ..... ..+++++
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 241 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence 221 11233456788888765433 4445677788876432 22222221 11222 3347788
Q ss_pred CEEEEE-eCCCeEEEEECcCCeEEEE---ecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q psy3053 849 CTMLVG-CWDSCVVIYDVECGRIVTE---LAGHEDAISCVAWDEKRKRLISGN-LVGAPKLYATE 908 (917)
Q Consensus 849 ~~Lasg-s~DG~I~Iwdl~tg~~l~~---l~~h~~~V~slafSpdg~~LaSgs-~DG~V~IWdl~ 908 (917)
++++++ ..++.+.+|++........ ...+...+.+++|+|||++|++++ .++.|++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 876554 5678999998875543222 223445678899999999988765 56889999764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=5.1e-16 Score=168.76 Aligned_cols=299 Identities=11% Similarity=-0.018 Sum_probs=195.9
Q ss_pred ceEEEEEeCCCcEEEEEe-----cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE----------ecccEE
Q psy3053 582 AITAVAICGEGISVASVG-----RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG----------CWDSCV 646 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg----------s~Dg~I 646 (917)
++...+.+|||+.++... .++.|.+||..+++.+.++..+.. ..++|+|||+.|+++ +.|+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 445557799999987764 355799999999999888776544 478999999988764 347899
Q ss_pred EEEEeccCeeeEEeccCCC-------ceeEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 647 VIYDVECGRIVTELAGHED-------AISCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~-------~Vt~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
++||..+++.+..+..+.. ....++|+++++.++.++ .+..+.+|+..++.....................
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 9999999998887754332 345689999999888775 4578999998776210000000000000112233
Q ss_pred EEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 718 CLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 718 ~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
.+.+++++..++... .++.+.+++..... ..+...+....+++++..++.++.++.+++|++..+........
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 234 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence 455566665554432 23344444433322 12344456677888999999999999999999987754322110
Q ss_pred -------------CCceEEEEEeCCCE-EEEEeC----------CCeEEEEECCCCEEEEEEecCCCceEEE--eecCC-
Q psy3053 797 -------------EEKLLCLSWAGEEK-VILGGA----------LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNC- 849 (917)
Q Consensus 797 -------------~~~i~~l~~s~~~~-lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~- 849 (917)
......+++++++. +++... ...|.+||..+++.+..+..+ ..+.++ +|||+
T Consensus 235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~ 313 (355)
T d2bbkh_ 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 313 (355)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSC
T ss_pred CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCe
Confidence 11123356665543 333222 247999999999988887643 234444 78987
Q ss_pred -EEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 850 -TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 850 -~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
++++++.|++|++||+++++.+.++.++...-..+.+.++
T Consensus 314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 4566778999999999999999999876555555555443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=6.6e-16 Score=166.13 Aligned_cols=265 Identities=13% Similarity=0.059 Sum_probs=186.2
Q ss_pred ccccCCccccceeeec-cCCcceEEEEEeCCCcEEE-EEecCCceEEEeccCCceeeeeeccc------cceEEEEEeCC
Q psy3053 562 NSWCDKSILEPLHFCH-SHKEAITAVAICGEGISVA-SVGRDAMLKIHSLKTGRQERSAVLSS------MTLSSLCILPD 633 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~-~H~~~Vtsv~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~~~~~~------~~V~sl~~spd 633 (917)
.+||..+. +.+.+++ .|...+.+++|+|||++++ +++.++.|.+||+.+++.+..+.... ..+..++++||
T Consensus 21 ~v~D~~t~-~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 21 HVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD 99 (346)
T ss_dssp EEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred EEEECCCC-CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecC
Confidence 47776544 6777776 4667789999999999875 55578999999999998877665432 23567899999
Q ss_pred CCEEEEEe------------cccEEEEEEeccCeeeEEeccC--CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 634 NCTMLVGC------------WDSCVVIYDVECGRIVTELAGH--EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 634 ~~~Lasgs------------~Dg~I~Iwdl~tg~~i~~l~~H--~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
|+.+++++ .++.+.+|+..+++....+..+ ...+..+.+++++..+++ ++.+.+|++.++..
T Consensus 100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 175 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKY- 175 (346)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCE-
T ss_pred CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCE-
Confidence 99988765 3677899999888765544433 345667777777766654 35688999876521
Q ss_pred ccCCcceeeeccCCCceEEEEE--------------------------eCCCCEEEEEECCCeEEEEECCCCeeeEEecC
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAI--------------------------SKDNNQLAVGTEAGELIIWSLENHLMTQQLSD 753 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~--------------------------spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~ 753 (917)
............+.+ .+....++++..++.+.+||+.++........
T Consensus 176 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (346)
T d1jmxb_ 176 -------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248 (346)
T ss_dssp -------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred -------EEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEee
Confidence 001111111111111 12233444555667799999998877666555
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEE
Q psy3053 754 DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 754 ~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
.+...+..+.+++++..++.+.. +.+.+||..+++.+........+.++++++++ .+++++.+|.|.+||..+++.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 249 DLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp ECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred cccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEE
Confidence 67888999999999888877664 57999999999998888887788888888765 46677788888888888888888
Q ss_pred EEecCCC
Q psy3053 833 QVRAHKD 839 (917)
Q Consensus 833 ~l~~h~~ 839 (917)
++....+
T Consensus 328 ~i~~p~g 334 (346)
T d1jmxb_ 328 NIKLPGG 334 (346)
T ss_dssp EEECSSS
T ss_pred EEECCCC
Confidence 7765443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=3.4e-15 Score=162.11 Aligned_cols=283 Identities=12% Similarity=0.007 Sum_probs=187.6
Q ss_pred EEEEEeCCCCEEEEEe-----cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEE----------ECCCeEEE
Q psy3053 626 SSLCILPDNCTMLVGC-----WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG----------SWDCTVRV 690 (917)
Q Consensus 626 ~sl~~spd~~~Lasgs-----~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sg----------s~DgtI~v 690 (917)
...+.+||++.+++.. .++.|.+||..+++.+.++..+..+ .++|+|||++|+++ +.|+.|.+
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3345689999887753 4668999999999999988766544 79999999988764 35789999
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeeeEEecCCCC------CCeEEE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT--EAGELIIWSLENHLMTQQLSDDIN------ASVNGV 762 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs--~dG~I~iwDl~~~~~~~~l~~~h~------~~V~~v 762 (917)
||..++......................++|+++++.+++++ .+..+.+|+..+++.+..+..... .....+
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 999876311100000000111223345689999999887765 456899999999998887762211 123345
Q ss_pred EEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEEEe-CCCEEEEEeCCCeEEEEECCCCEEE--EEEec--
Q psy3053 763 LFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA-GEEKVILGGALGMVYLVDLIQVQLL--KQVRA-- 836 (917)
Q Consensus 763 ~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s-~~~~lv~gs~dG~I~vwdl~~~~~i--~~l~~-- 836 (917)
.++++|+.++... .++.+.+++...... .....+.+..+. +++.++.++.++.+++|++..++.. .....
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHP----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSC----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred EEcCCCCEEEEEecCCCeEEEEecccccc----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence 6666666555433 233444444433221 111122333344 4567888899999999999877532 22221
Q ss_pred ----------CCCceEEEeecCCEEEEEeCC----------CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC--EEE
Q psy3053 837 ----------HKDAVLSLHFDNCTMLVGCWD----------SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK--RLI 894 (917)
Q Consensus 837 ----------h~~~V~sis~dg~~Lasgs~D----------G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~--~La 894 (917)
+......+++++..++....+ ..|.+||..+++.+..+.. ...+.+++|+|||+ +++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v 317 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYA 317 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEE
T ss_pred cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEE
Confidence 122345667888887766543 3699999999999888863 45688999999998 456
Q ss_pred EEeCCCcEEEEecC-cceEEEE
Q psy3053 895 SGNLVGAPKLYATE-FYLLYVL 915 (917)
Q Consensus 895 Sgs~DG~V~IWdl~-~~ll~~L 915 (917)
+++.|+.|++||++ +..+.++
T Consensus 318 ~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 318 LSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EETTTTEEEEEETTTCCEEEEE
T ss_pred EECCCCEEEEEECCCCCEEEEE
Confidence 77889999999997 4456655
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.66 E-value=8.7e-14 Score=152.19 Aligned_cols=298 Identities=10% Similarity=-0.039 Sum_probs=203.4
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEe----------cCCceEEEeccCCceeeeeeccccce------
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVG----------RDAMLKIHSLKTGRQERSAVLSSMTL------ 625 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~~~~~~~~V------ 625 (917)
.+||..+ .+.+..+..+..+ .++|||||+++++++ .++.|.+||..+++.+..+..+....
T Consensus 50 ~v~D~~t-g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~ 126 (373)
T d2madh_ 50 WVLDAGS-GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEECCC-CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccC
Confidence 3555443 3566667666544 799999999998875 45789999999999888776655433
Q ss_pred -EEEEEeCCCCEEEEEec--ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCcc
Q psy3053 626 -SSLCILPDNCTMLVGCW--DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 626 -~sl~~spd~~~Lasgs~--Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
..+.++++++.+++... ++.+.+|+..+++..... ....++.++|+++.+ ++.+.|+++.+|+.........
T Consensus 127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~ 202 (373)
T d2madh_ 127 SWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred CCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence 44778899987766654 567889998877655433 456788999988754 6888999999999876521110
Q ss_pred CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
.. ................+++++. ++..+.++.+.+|+..++....... ...........+.|.+...++.+.|+..
T Consensus 203 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 280 (373)
T d2madh_ 203 LV-GAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred Ee-eeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCe
Confidence 00 0000111222234455555554 4555678899999998875433222 1344455566666666666666666543
Q ss_pred EEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE--EEEEeC
Q psy3053 781 NVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT--MLVGCW 856 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~--Lasgs~ 856 (917)
..+- ..+...++....++.+.+||..+++.+..+. +...+.++ ++||+. +++++.
T Consensus 281 ~~~~--------------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~ 339 (373)
T d2madh_ 281 IYLL--------------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred EEEe--------------------cCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCC
Confidence 3322 1233467778888999999999999888875 33445555 779884 467889
Q ss_pred CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 857 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 857 DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
|+.|++||+.+++.+..+..+....+.+++.++
T Consensus 340 d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 340 TEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999999999999999988777777777654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=4.2e-14 Score=151.43 Aligned_cols=271 Identities=11% Similarity=0.117 Sum_probs=183.0
Q ss_pred EEEEecCCceEEEeccCCceeeee--eccccceEEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEEe---ccCCCcee
Q psy3053 595 VASVGRDAMLKIHSLKTGRQERSA--VLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTEL---AGHEDAIS 668 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~t~~~~~~~--~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~l---~~H~~~Vt 668 (917)
+++++.|++|++|++.+...+..+ ..+...+.+++|+|||++|++++ .|+.|++|++..+.....+ ..+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 467779999999999765443333 34667899999999999986555 5899999999876433222 23445678
Q ss_pred EEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-CeEEEEECCCCe
Q psy3053 669 CVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHL 746 (917)
Q Consensus 669 ~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-G~I~iwDl~~~~ 746 (917)
.++|+|||++|++++. ++.|.+|+..... .........+...+.++.++|+++.+++++.+ ..+.+|+.....
T Consensus 87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGL-----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTE-----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EEEEcCCCCEEeecccCCCceeeecccccc-----ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence 8999999999999885 6789999876541 11223344566778899999999988877754 568999987653
Q ss_pred eeEE-----ecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCe----EEEEee-------cCCceEEEEEeCCC
Q psy3053 747 MTQQ-----LSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGM----QVCNKV-------FEEKLLCLSWAGEE 809 (917)
Q Consensus 747 ~~~~-----l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~----~i~~~~-------~~~~i~~l~~s~~~ 809 (917)
.... ...........++|++++..++... ..+...+++..... ...... .......+++++++
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 241 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence 2221 2223456678999999998887665 45677888764321 111111 12335567777765
Q ss_pred E--EEEEeCCCeEEEEECCCCEEE---EEEecCCCce--EEEeecCCEEEEEeC-CCeEEEEE--CcCCeE
Q psy3053 810 K--VILGGALGMVYLVDLIQVQLL---KQVRAHKDAV--LSLHFDNCTMLVGCW-DSCVVIYD--VECGRI 870 (917)
Q Consensus 810 ~--lv~gs~dG~I~vwdl~~~~~i---~~l~~h~~~V--~sis~dg~~Lasgs~-DG~I~Iwd--l~tg~~ 870 (917)
. ++++..++.+.+|++...... .........+ .+++|||++|++++. ++.|.+|+ .++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 4 445566789999988654322 2222233333 355889999877654 68999994 566754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=7.2e-13 Score=150.61 Aligned_cols=327 Identities=12% Similarity=0.022 Sum_probs=198.4
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-----ccccceEEEEEeCCCCEEEEEec---------ccEEEEEE
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-----LSSMTLSSLCILPDNCTMLVGCW---------DSCVVIYD 650 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-----~~~~~V~sl~~spd~~~Lasgs~---------Dg~I~Iwd 650 (917)
.+.|.++++++.. .|+.+.+||+.+++....+. .+...|.+..|+||+++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4678899987763 57889999999998765443 34567999999999999998753 57889999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC--cceeee---------ccCCCceEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS--KSLVSQ---------LDLDNRIKCL 719 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~--~~~~~~---------~~h~~~V~~l 719 (917)
+++++. ..+..|.+.+..+.|+|||+.+|... ++.+.+|+..++....... ..-... ....+....+
T Consensus 99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 176 (470)
T d2bgra1 99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (470)
T ss_dssp TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence 998874 55788999999999999999999964 7789999987763211100 000000 1123445678
Q ss_pred EEeCCCCEEEEEECCCe-EEEEE-----------------------------------CCCCeeeEEec----------C
Q psy3053 720 AISKDNNQLAVGTEAGE-LIIWS-----------------------------------LENHLMTQQLS----------D 753 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~-I~iwD-----------------------------------l~~~~~~~~l~----------~ 753 (917)
.|||||+.|+....|.+ +..|+ +.++....... .
T Consensus 177 ~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
T d2bgra1 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (470)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccC
Confidence 89999999998765432 33222 21111100000 0
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-CCC-----eEEEEECCCCeEEEEee-------c-------CCceEEEEEeCCCE-EE
Q psy3053 754 DINASVNGVLFSEDGCRVLSCG-NNC-----MLNVYDLTTGMQVCNKV-------F-------EEKLLCLSWAGEEK-VI 812 (917)
Q Consensus 754 ~h~~~V~~v~fspdg~~L~s~s-~Dg-----~I~iwDl~tg~~i~~~~-------~-------~~~i~~l~~s~~~~-lv 812 (917)
.....+..+.|.+++..++... ..+ .+..+|..++....... . ........+++++. ++
T Consensus 257 ~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (470)
T d2bgra1 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (470)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEE
Confidence 1112345678888887655432 221 23445566665543211 0 11112222334444 44
Q ss_pred EEeCCCeE--EEEECCCCEEEEEEecCCCceEEE-eecCCEE-EEEeCCC----eEEEE--ECcCCeEEEEe----cCCC
Q psy3053 813 LGGALGMV--YLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTM-LVGCWDS----CVVIY--DVECGRIVTEL----AGHE 878 (917)
Q Consensus 813 ~gs~dG~I--~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~L-asgs~DG----~I~Iw--dl~tg~~l~~l----~~h~ 878 (917)
.+..+|.. ++|+...+. ...+..+...|..+ +++++.+ ++++.++ .-.+| ++..+.....+ .+|.
T Consensus 337 ~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~ 415 (470)
T d2bgra1 337 ISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPER 415 (470)
T ss_dssp EECTTSCEEEEEEETTCSC-CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTT
T ss_pred EeccCcCceeEEEeccCCc-eeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCC
Confidence 55666654 455654444 34444455566666 6777765 3443332 22344 44544444443 3678
Q ss_pred CCEEEEEEcCCCCEEEE---EeCCCcEEEEecC-cceEEEEe
Q psy3053 879 DAISCVAWDEKRKRLIS---GNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 879 ~~V~slafSpdg~~LaS---gs~DG~V~IWdl~-~~ll~~Lt 916 (917)
..+.+++|||||++++. |...-.+.+|+.. +..+..|+
T Consensus 416 ~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 88999999999999773 3334458888876 44666653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.44 E-value=1.7e-12 Score=142.43 Aligned_cols=285 Identities=6% Similarity=-0.059 Sum_probs=178.5
Q ss_pred ceEEEEEeCCCCEE--EE-Eec--ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeE
Q psy3053 624 TLSSLCILPDNCTM--LV-GCW--DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTV 688 (917)
Q Consensus 624 ~V~sl~~spd~~~L--as-gs~--Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI 688 (917)
+...++..++++.. +. +.. +..+.+||..+++.+..+.++... .++|+|||+.|++++ .|++|
T Consensus 21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v 98 (368)
T d1mdah_ 21 SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYV 98 (368)
T ss_dssp CCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred CccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeE
Confidence 33444556777643 22 233 445778899999999988877654 589999999988765 47789
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSED 767 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd 767 (917)
.+||..+.......................++|+|||++++++. .++.+.+||+.+++....+.......+ ....
T Consensus 99 ~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~ 174 (368)
T d1mdah_ 99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGA 174 (368)
T ss_dssp EEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEE
T ss_pred EEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCC
Confidence 99999876211000000000001122334689999999998776 579999999999999888763222111 1122
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEee-------cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEE--e---
Q psy3053 768 GCRVLSCGNNCMLNVYDLTTGMQVCNKV-------FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQV--R--- 835 (917)
Q Consensus 768 g~~L~s~s~Dg~I~iwDl~tg~~i~~~~-------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l--~--- 835 (917)
...+++.+.||.+.+++...+....... ....+....+.+++..+. ...+.+++++...+...... .
T Consensus 175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (368)
T d1mdah_ 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNE 253 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSC
T ss_pred CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeeccccc
Confidence 3455566667777777765443221111 112234455666655443 44566777776655433221 1
Q ss_pred ---------cCCCceEEEeecCCEEEEEeCC---------CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCE--EEE
Q psy3053 836 ---------AHKDAVLSLHFDNCTMLVGCWD---------SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR--LIS 895 (917)
Q Consensus 836 ---------~h~~~V~sis~dg~~Lasgs~D---------G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~--LaS 895 (917)
........+++++..++....+ ..|.+||..+++.+..+. +...+.+++|+|||+. +++
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEE
T ss_pred ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEE
Confidence 1223345668888876655332 358999999999988776 3457889999999973 456
Q ss_pred EeCCCcEEEEecCc-ceEEEEe
Q psy3053 896 GNLVGAPKLYATEF-YLLYVLT 916 (917)
Q Consensus 896 gs~DG~V~IWdl~~-~ll~~Lt 916 (917)
+..|+.|++||..+ +.+..+.
T Consensus 333 ~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 333 SAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp ETTTTEEEEEESSSCEEEEECC
T ss_pred eCCCCeEEEEECCCCCEEEEEE
Confidence 77899999999974 4555543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=6.6e-12 Score=137.63 Aligned_cols=266 Identities=8% Similarity=-0.103 Sum_probs=176.0
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEe----------cCCceEEEeccCCceeeeeecccc-------ce
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVG----------RDAMLKIHSLKTGRQERSAVLSSM-------TL 625 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~~~~~~~-------~V 625 (917)
+|+..+ .+.+....++..+ .++|+|||+.|++++ .|+.|.+||..+++....+..+.. ..
T Consensus 50 ~~d~~~-~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p 126 (368)
T d1mdah_ 50 VSCAGC-GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEETTT-TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred EEeCCC-CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCc
Confidence 335433 3455666666554 589999999988765 367899999999998887765432 23
Q ss_pred EEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCc
Q psy3053 626 SSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 626 ~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
..++|+|||++++++. .++.+.+||+.+++....+..+...... ......+++.+.||++.+|+.......... .
T Consensus 127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~-~ 202 (368)
T d1mdah_ 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGI-V 202 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEE-C
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeee-e
Confidence 4689999999998876 5799999999999998888766543211 122356677788888888887654211100 0
Q ss_pred ceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-C----------CCCCeEEEEEecCCCEEEE
Q psy3053 705 SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-D----------INASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~----------h~~~V~~v~fspdg~~L~s 773 (917)
.......+...+....+.+++..+.+ ..+.+.+++...+........ . .......+++++++..++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v 280 (368)
T d1mdah_ 203 GAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence 00112233444556677777655543 345667777665544332210 0 0122345788998887766
Q ss_pred EeCC---------CeEEEEECCCCeEEEEeecCCceEEEEEeCCCE---EEEEeCCCeEEEEECCCCEEEEEEecC
Q psy3053 774 CGNN---------CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK---VILGGALGMVYLVDLIQVQLLKQVRAH 837 (917)
Q Consensus 774 ~s~D---------g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~---lv~gs~dG~I~vwdl~~~~~i~~l~~h 837 (917)
...+ ..+.+||..+++.+........+.++++++++. ++++..++.|++||..+++.+.++...
T Consensus 281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred EecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence 5322 358889999998888777777788888888763 345566788999999888888887643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=4.7e-11 Score=135.27 Aligned_cols=301 Identities=9% Similarity=-0.000 Sum_probs=181.6
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEec---------CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGR---------DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~---------Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
.+..|...|.++.|||||++|+.++. ++.+.+||+.+++. ..+..+...+....|+|||+.+|.. .++.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence 45667789999999999999998753 56788999998764 5577788889999999999999985 5778
Q ss_pred EEEEEeccCeeeEEecc------------------CCCceeEEEecCCCCEEEEEECCCe-EEEEeCC---CCCCCc---
Q psy3053 646 VVIYDVECGRIVTELAG------------------HEDAISCVAWDEKRKRLISGSWDCT-VRVWNTG---ASWSHM--- 700 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~------------------H~~~Vt~l~~spd~~~L~Sgs~Dgt-I~vWdl~---~~~~~~--- 700 (917)
+++|+..+++..+.... +.+....+.|+|||+.|+.+..|.+ +..|.+. ......
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 99999998876654332 2233567889999999999876643 4444321 110000
Q ss_pred -----------cCCccee----------------------eeccCCCceEEEEEeCCCCEEEEEE-CCC-----eEEEEE
Q psy3053 701 -----------KPSKSLV----------------------SQLDLDNRIKCLAISKDNNQLAVGT-EAG-----ELIIWS 741 (917)
Q Consensus 701 -----------~~~~~~~----------------------~~~~h~~~V~~l~~spdg~~Lasgs-~dG-----~I~iwD 741 (917)
.+..... ........+..+.|.+++..++... ..+ .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEec
Confidence 0000000 0011223356788888887665532 221 234455
Q ss_pred CCCCeeeEEecC-----CCCC-----CeEEEEEecCC--CEEEEEeCCCeE--EEEECCCCeEEEEeecCCceEEE-EEe
Q psy3053 742 LENHLMTQQLSD-----DINA-----SVNGVLFSEDG--CRVLSCGNNCML--NVYDLTTGMQVCNKVFEEKLLCL-SWA 806 (917)
Q Consensus 742 l~~~~~~~~l~~-----~h~~-----~V~~v~fspdg--~~L~s~s~Dg~I--~iwDl~tg~~i~~~~~~~~i~~l-~~s 806 (917)
..++........ .... .-....+.+++ ..++.+..||.. .+|+...+...........+..+ .++
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d 373 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT 373 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEEC
T ss_pred CCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEEEEEC
Confidence 556554332210 0000 11122344443 345566677655 44566555544433344445554 445
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCEEEEEE----ecCCCceEEE--eecCCEEEE---EeCCCeEEEEECcCCeEE
Q psy3053 807 GEEKVILGGALG------MVYLVDLIQVQLLKQV----RAHKDAVLSL--HFDNCTMLV---GCWDSCVVIYDVECGRIV 871 (917)
Q Consensus 807 ~~~~lv~gs~dG------~I~vwdl~~~~~i~~l----~~h~~~V~si--s~dg~~Las---gs~DG~I~Iwdl~tg~~l 871 (917)
++..+++++.++ .|+-.++..+.....+ .+|...+.++ ||||++++. |...-.+.+|+..+++.+
T Consensus 374 ~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v 453 (470)
T d2bgra1 374 SDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (470)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred CCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEE
Confidence 554445554432 2555566655444444 3566667655 789999773 333446899999999999
Q ss_pred EEecCC
Q psy3053 872 TELAGH 877 (917)
Q Consensus 872 ~~l~~h 877 (917)
..+..+
T Consensus 454 ~~le~n 459 (470)
T d2bgra1 454 RVLEDN 459 (470)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.32 E-value=6.5e-13 Score=148.16 Aligned_cols=292 Identities=10% Similarity=-0.029 Sum_probs=188.8
Q ss_pred EEEEecCCceEEEeccCCceeeeeec------------------------------cccceEEEEEeCCCCEEEEEe-cc
Q psy3053 595 VASVGRDAMLKIHSLKTGRQERSAVL------------------------------SSMTLSSLCILPDNCTMLVGC-WD 643 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~t~~~~~~~~~------------------------------~~~~V~sl~~spd~~~Lasgs-~D 643 (917)
++|++.+|.|++|++.+++.++.+.. |....+....+|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56778899999999988887666432 111223333568999886654 68
Q ss_pred cEEEEEEeccCeeeEEec-cCCCceeEEEecCCCC--EEEEEECCC-----------------eEEEEeCCCCCCCccCC
Q psy3053 644 SCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRK--RLISGSWDC-----------------TVRVWNTGASWSHMKPS 703 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~~--~L~Sgs~Dg-----------------tI~vWdl~~~~~~~~~~ 703 (917)
+.|.++|+++++..+.+. .+...+..++|+|+++ +++..+.+. .+..+|..+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~------- 166 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM------- 166 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC-------
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc-------
Confidence 899999999999887765 3567899999999988 454444432 2244565543
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCC-eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
..............++++|+|+++++++.+. .+..++..+......+. .......++++|+|+++.. +.++.+.+
T Consensus 167 -~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~--v~n~p~~~~~~~dGk~~~v-~~~~v~vv 242 (441)
T d1qnia2 167 -DVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV--VFNVERIAAAVKAGNFKTI-GDSKVPVV 242 (441)
T ss_dssp -SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE--EEEHHHHHHHHHTTCCBCC-TTCCCCEE
T ss_pred -eeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE--eCCccceEEEecCCCEEEe-CCCCcEEE
Confidence 2222223345678899999999999888663 23333333322221111 0011122345678887755 44667778
Q ss_pred EECCCCeEEEEeecCCceEEEEEeCCCEE--EEEeCCCeEEEEECCCCEE--------EEEEecCC---Cce--EEEeec
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWAGEEKV--ILGGALGMVYLVDLIQVQL--------LKQVRAHK---DAV--LSLHFD 847 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s~~~~l--v~gs~dG~I~vwdl~~~~~--------i~~l~~h~---~~V--~sis~d 847 (917)
++......+..+........+.++|+|.. +++..+++|.+||+.+... ...+.++. -.. ++.+++
T Consensus 243 d~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~ 322 (441)
T d1qnia2 243 DGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR 322 (441)
T ss_dssp ECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred EcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC
Confidence 87776666777776777788999998874 3456789999999865221 00111111 111 233556
Q ss_pred CCEEEEEeCCCeEEEEECcC----------CeEEEEe-----cCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 848 NCTMLVGCWDSCVVIYDVEC----------GRIVTEL-----AGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~t----------g~~l~~l-----~~h~~~V~slafSpdg~~LaSgs 897 (917)
|....+...|..|..|++.. ...+..+ .||...+.+.+++|||++|++++
T Consensus 323 g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 323 GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred ceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 67778888999999999741 2244444 46766677778999999999994
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.10 E-value=8.4e-11 Score=130.81 Aligned_cols=263 Identities=11% Similarity=-0.025 Sum_probs=172.7
Q ss_pred EEEEecccEEEEEEeccCeeeEEecc------------------------------CCCceeEEEecCCCCEEEEEE-CC
Q psy3053 637 MLVGCWDSCVVIYDVECGRIVTELAG------------------------------HEDAISCVAWDEKRKRLISGS-WD 685 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg~~i~~l~~------------------------------H~~~Vt~l~~spd~~~L~Sgs-~D 685 (917)
+++|+.+|.|.+|++.+++.++++.. |.........+|||++|+... .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56778899999999999988776531 233445555678999986654 67
Q ss_pred CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC--EEEEEECCC-----------------eEEEEECCCCe
Q psy3053 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN--QLAVGTEAG-----------------ELIIWSLENHL 746 (917)
Q Consensus 686 gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~--~Lasgs~dG-----------------~I~iwDl~~~~ 746 (917)
+.|.++|+.+... ...........+..++++|+|+ +++.++.+. .+..+|..+.+
T Consensus 94 ~rVavIDl~t~k~------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 94 TRVARIRLDIMKT------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp TEEEEEETTTTEE------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred CEEEEEECCCCcE------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 8999999987621 1111345567899999999997 455544432 23568888888
Q ss_pred eeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 747 MTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 747 ~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
...++. ..+....++++|+|+++++++.+. .+..++..+.................+.+++..+..+.++.+.+++.
T Consensus 168 v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~ 245 (441)
T d1qnia2 168 VAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR 245 (441)
T ss_dssp EEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred eeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence 877775 345678899999999999887653 23233332222111111000001112234555555566788888887
Q ss_pred CCCEEEEEEecCCCce-EEEeecCCEEEE-EeCCCeEEEEECcCCeE------------EEEecCCCCCEEEEEEcCCCC
Q psy3053 826 IQVQLLKQVRAHKDAV-LSLHFDNCTMLV-GCWDSCVVIYDVECGRI------------VTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 826 ~~~~~i~~l~~h~~~V-~sis~dg~~Las-gs~DG~I~Iwdl~tg~~------------l~~l~~h~~~V~slafSpdg~ 891 (917)
...+.+..+.....+- ..++|||+++++ +..+++|.+||+++... ..... ..-.....+|+++|.
T Consensus 246 ~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~-~glgplh~~fd~~g~ 324 (441)
T d1qnia2 246 GESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE-LGLGPLHTTFDGRGN 324 (441)
T ss_dssp SSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB-CCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc-cccCcccceecCCce
Confidence 7777777776544432 455999998654 66789999999865221 11111 111245568999999
Q ss_pred EEEEEeCCCcEEEEecC
Q psy3053 892 RLISGNLVGAPKLYATE 908 (917)
Q Consensus 892 ~LaSgs~DG~V~IWdl~ 908 (917)
...|...|..|..|+++
T Consensus 325 ~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 325 AYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEEETTTTEEEEEEHH
T ss_pred EEEcccccceEEEeccc
Confidence 88999999999999985
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.89 E-value=3.8e-07 Score=96.40 Aligned_cols=224 Identities=8% Similarity=-0.025 Sum_probs=158.5
Q ss_pred ceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q psy3053 666 AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~ 745 (917)
.+..++++|||+++++...+++|..|+.... ..........+.+++++++|++++++..++.+..++....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---------~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~ 99 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS 99 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---------EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence 5788999999999999999999988885543 2233455678999999999999999988888888876543
Q ss_pred --eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-----------CCceEEEEEeCCCEEE
Q psy3053 746 --LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF-----------EEKLLCLSWAGEEKVI 812 (917)
Q Consensus 746 --~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-----------~~~i~~l~~s~~~~lv 812 (917)
................+++.++|+++++.+.++.+..++..++........ ......+.++++..++
T Consensus 100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~ 179 (302)
T d2p4oa1 100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV 179 (302)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceee
Confidence 222222223456788999999999988888899999999887754432221 1235677788876777
Q ss_pred EEeCCCeEEEEECCCCEEEE---EE-ecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEE--EEecCCCCCEEEEEE
Q psy3053 813 LGGALGMVYLVDLIQVQLLK---QV-RAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIV--TELAGHEDAISCVAW 886 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~---~l-~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l--~~l~~h~~~V~slaf 886 (917)
+.+..+.|..++........ .. ......-.+++.+|++.++...+++|..++.. ++.. ......-...++++|
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 180 SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred ecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEE
Confidence 78888999999876543211 11 12222234557789988888888999999775 4432 333334456899999
Q ss_pred ---cCCCCEEEEEeCC
Q psy3053 887 ---DEKRKRLISGNLV 899 (917)
Q Consensus 887 ---Spdg~~LaSgs~D 899 (917)
++|++.|+.++..
T Consensus 259 g~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 259 GQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CCSTTTTTEEEEEECT
T ss_pred cCCCCCCCEEEEECCC
Confidence 6788888766544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=1.1e-06 Score=91.50 Aligned_cols=237 Identities=11% Similarity=0.134 Sum_probs=161.7
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecc------ccceEEEEEeCCC-CEEEEE-ecccEEEEEEecc
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS------SMTLSSLCILPDN-CTMLVG-CWDSCVVIYDVEC 653 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~------~~~V~sl~~spd~-~~Lasg-s~Dg~I~Iwdl~t 653 (917)
.-..|+++++|+.+++-...+.|++||.+ |+.+..+... ...-..+++.++. ..+++. +.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 35789999999987776778889999965 6655544221 1122345555543 344433 34557777765 4
Q ss_pred CeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 654 GRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 654 g~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
++....+. ........+++.+++..+++....+.+.+++..... ........+......+++.++++.+++..
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV------LHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE------EEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce------eecccccccccccceeeeccceeEEeeec
Confidence 55555553 345667889999999888887777888888764320 01111234456678899999999988888
Q ss_pred CCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCeEEEEeecC---CceEEEEEeC
Q psy3053 733 EAGELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTGMQVCNKVFE---EKLLCLSWAG 807 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg~~i~~~~~~---~~i~~l~~s~ 807 (917)
..+.|.+||.. ++.+..+. .+......++++.++|+.+++-.. ++.|.+++. +|+.+..+... .....+++++
T Consensus 176 ~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 176 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 89999999975 45566653 234456789999999997776543 457999984 57766555432 3467888888
Q ss_pred CCEEEEEeCCCeEEEEECCCC
Q psy3053 808 EEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~ 828 (917)
++.+++++.+..|++|.....
T Consensus 254 dG~l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSVVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEEEEEETTTEEEEEECSCC
T ss_pred CCcEEEEeCCCeEEEEEeeee
Confidence 888888888888888887654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.5e-06 Score=87.36 Aligned_cols=222 Identities=13% Similarity=0.134 Sum_probs=138.5
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCC---ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-ccEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDA---MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVIY 649 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg---~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iw 649 (917)
..+..+.+.+.+-+|||||+.||...... .+.+.+..++.. ..+..+........|+|+|+.++.... ++...++
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 110 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence 33445567788999999999998765433 344555544443 344556667788899999998887654 3333333
Q ss_pred EeccC-eeeEEeccCCCceeEEEecCCCCEEEE-EECCCeEEE--EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 650 DVECG-RIVTELAGHEDAISCVAWDEKRKRLIS-GSWDCTVRV--WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 650 dl~tg-~~i~~l~~H~~~Vt~l~~spd~~~L~S-gs~DgtI~v--Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
..... ........+........+++++..++. ...+|...+ .+.... ................|+|++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~spdg 182 (269)
T d2hqsa1 111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--------APQRITWEGSQNQDADVSSDG 182 (269)
T ss_dssp EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------CCEECCCSSSEEEEEEECTTS
T ss_pred ecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc--------cceeeeccccccccccccccc
Confidence 33222 222233334445555667776665544 445554444 444433 222233445667788999999
Q ss_pred CEEEEEECCC---eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCc
Q psy3053 726 NQLAVGTEAG---ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 726 ~~Lasgs~dG---~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwDl~tg~~i~~~~~~~~ 799 (917)
+.++..+.++ .+.+.+...+.. ... ..........|||||+.|+..+. ...|.++++..+.........+.
T Consensus 183 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~ 259 (269)
T d2hqsa1 183 KFMVMVSSNGGQQHIAKQDLATGGV-QVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQ 259 (269)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCCE-EEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSE
T ss_pred ceeEEEeecCCceeeeEeecccccc-eEe--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCc
Confidence 9888776554 355556555543 222 24556678899999999886553 34689999988776655555666
Q ss_pred eEEEEEeC
Q psy3053 800 LLCLSWAG 807 (917)
Q Consensus 800 i~~l~~s~ 807 (917)
+...+|+|
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEeEEeCC
Confidence 77788887
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.79 E-value=2.5e-07 Score=100.81 Aligned_cols=283 Identities=8% Similarity=-0.054 Sum_probs=149.4
Q ss_pred CCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
+...+.-|+++++++.|++++. +.+..|.+.......... ........++++++++.+.....+
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~------------- 103 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK------------- 103 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS-------------
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEec-------------
Confidence 4555678999999999988765 567777765432222111 112233456667777643322211
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-CC
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-AG 735 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-dG 735 (917)
.+...|....+.+++......+.+...++... ...........+.++.|+|+|+++++++. ..
T Consensus 104 -----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d 167 (365)
T d1jofa_ 104 -----QPPYAVYANPFYKFAGYGNVFSVSETGKLEKN-----------VQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp -----STTCCEEEEEESSSCCEEEEEEECTTCCEEEE-----------EEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred -----CCCCEEEEeEccCCCCcceeEeeeecceecCc-----------ccCcccCCCCcceEEEECCCCCEEEEeeCCCC
Confidence 12333444444444433322222222122111 00111122345789999999998888764 35
Q ss_pred eEEEEECCCC-eee--EEe-cCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 736 ELIIWSLENH-LMT--QQL-SDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 736 ~I~iwDl~~~-~~~--~~l-~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
.|.+|+.... ... ... ..........++|+|+|+++.+.. .+++|.+|+...+........ ..+...+.
T Consensus 168 ~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~----~~~~~~~~-- 241 (365)
T d1jofa_ 168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH----HSFPLIPP-- 241 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE----EEEESSCT--
T ss_pred EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe----eeeccccc--
Confidence 7888876533 221 111 113456789999999999886665 578899998865432111000 00000000
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCC--ceEEEeecCCEEEEEeC------CCeEEEEECcCCeEEE------EecC
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKD--AVLSLHFDNCTMLVGCW------DSCVVIYDVECGRIVT------ELAG 876 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~--~V~sis~dg~~Lasgs~------DG~I~Iwdl~tg~~l~------~l~~ 876 (917)
...........+.. ....++|||++|+++.. .+.|..|++.....+. ....
T Consensus 242 ---------------~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 306 (365)
T d1jofa_ 242 ---------------GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT 306 (365)
T ss_dssp ---------------TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred ---------------cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence 00000000000111 12345889998877642 2347777765432111 1122
Q ss_pred CCCCEEEEEEcC-CCCEEEEE-eCCCcEEEEecCcceE
Q psy3053 877 HEDAISCVAWDE-KRKRLISG-NLVGAPKLYATEFYLL 912 (917)
Q Consensus 877 h~~~V~slafSp-dg~~LaSg-s~DG~V~IWdl~~~ll 912 (917)
......+++++| +|++|+++ ..++.|.+|+++...+
T Consensus 307 ~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence 233457799998 89988766 5779999999886654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.78 E-value=5e-07 Score=93.26 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=147.7
Q ss_pred eEEEEEeCCCcEEEEE-ecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASV-GRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
-.+|+++++|+..++. +..+.+..++...................+++++++++.++....+.+++++-.++..+....
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~ 95 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD 95 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence 4789999999966654 445666666654332222222222334678899999888777777777766555554443333
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
+ .....++++.++++++++-..+..+..++...... ............+++++++++.+++...++.|..++
T Consensus 96 ~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d 167 (260)
T d1rwia_ 96 G-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-------TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 167 (260)
T ss_dssp S-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-------EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred e-eeecccccccccceeEeecccccccccccccccee-------eeeeecccCCcceeeecCCCCEeeeccccccccccc
Confidence 2 34578999999998887766677777777654311 111112223457899999999888888888999999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE-eecCCceEEEEEeCCCEEEEE-eCCCe
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVILG-GALGM 819 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~-~~~~~~i~~l~~s~~~~lv~g-s~dG~ 819 (917)
........ ...........+++.++|+++++....+.|..++......... ...-.....+++++++.++++ ..++.
T Consensus 168 ~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r 246 (260)
T d1rwia_ 168 AESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 246 (260)
T ss_dssp TTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTE
T ss_pred cccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCE
Confidence 87654333 3324456678999999999888888888888887654432211 111234677888776555544 33445
Q ss_pred EEEEE
Q psy3053 820 VYLVD 824 (917)
Q Consensus 820 I~vwd 824 (917)
|+.++
T Consensus 247 I~~i~ 251 (260)
T d1rwia_ 247 VVKLT 251 (260)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55444
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3.5e-06 Score=86.16 Aligned_cols=232 Identities=12% Similarity=0.105 Sum_probs=144.2
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC---eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC---TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg---tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|+|.|.+ |.....+..+...+...+|||||+.||-.+... .+.+.+...+ .......+........|
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 90 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--------AVRQVASFPRHNGAPAF 90 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------CEEEEECCSSCEEEEEE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC--------ceeEEeeeeccccccee
Confidence 57777876 444444555677889999999999998765443 3555565544 33344566778889999
Q ss_pred eCCCCEEEEEECC-Ce--EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCC--eEEEEECCCCeEEEEee
Q psy3053 722 SKDNNQLAVGTEA-GE--LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNC--MLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 722 spdg~~Lasgs~d-G~--I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg--~I~iwDl~tg~~i~~~~ 795 (917)
+|+|+.++..... +. +..+........... ..........+++++..++..+ .++ .+...++..+.......
T Consensus 91 spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 168 (269)
T d2hqsa1 91 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW 168 (269)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC
T ss_pred cCCCCeeeEeeecCCccceeecccccccceeee--eccccccccccccccccceecccccCCceEeeeecccccceeeec
Confidence 9999988876543 33 333333333222222 3444555667778777666554 344 46667777665554445
Q ss_pred cCCceEEEEEeCCCEE-EEE-eCCC--eEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC---CCeEEEEECcCC
Q psy3053 796 FEEKLLCLSWAGEEKV-ILG-GALG--MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW---DSCVVIYDVECG 868 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~l-v~g-s~dG--~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~---DG~I~Iwdl~tg 868 (917)
.........|++++.. +.. ...| .+.+.+...+..............+++|||+.|+..+. .+.++++++..+
T Consensus 169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 5556677788877653 333 3334 45555655554432222223333456899999876554 346889999866
Q ss_pred eEEEEecCCCCCEEEEEEcC
Q psy3053 869 RIVTELAGHEDAISCVAWDE 888 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSp 888 (917)
.. ..+....+.+...+|||
T Consensus 249 ~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 249 FK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CE-EECCCSSSEEEEEEECC
T ss_pred CE-EEEeCCCCcEEeEEeCC
Confidence 55 45666677888999998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.73 E-value=3e-06 Score=89.99 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=150.6
Q ss_pred eEEEEEeCCCcEEEEEec-------CCceEEEeccCCceeeeeecc----ccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 583 ITAVAICGEGISVASVGR-------DAMLKIHSLKTGRQERSAVLS----SMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~~~~~----~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
...++|.++|++.++... +|.|..||..++......... ...-..+++.++++.++++...+.+...+.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 456789999997776432 467888888777543322211 122457899999998888887777888887
Q ss_pred ccCeeeEEeccCC----CceeEEEecCCCCEEEEEEC---------------CCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 652 ECGRIVTELAGHE----DAISCVAWDEKRKRLISGSW---------------DCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 652 ~tg~~i~~l~~H~----~~Vt~l~~spd~~~L~Sgs~---------------DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
+.+.......... ...+.+++.++|+..+|-+. +|.|..++... ........
T Consensus 100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg---------~~~~~~~~ 170 (314)
T d1pjxa_ 100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG---------QMIQVDTA 170 (314)
T ss_dssp TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS---------CEEEEEEE
T ss_pred CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC---------ceeEeeCC
Confidence 7554332222111 13578999999988777432 12333333221 11111122
Q ss_pred CCceEEEEEeCCCC-----EEEEEECCCeEEEEECCCCeee------EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q psy3053 713 DNRIKCLAISKDNN-----QLAVGTEAGELIIWSLENHLMT------QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLN 781 (917)
Q Consensus 713 ~~~V~~l~~spdg~-----~Lasgs~dG~I~iwDl~~~~~~------~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~ 781 (917)
-.....++|+++++ +.++-+..+.|..||+.....+ ..+..........+++..+|+..++....+.|.
T Consensus 171 ~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence 23346789998765 4455567788999887543222 122222233467899999999888888889999
Q ss_pred EEECCCCeEEEEeecC-CceEEEEEeCCC--EEEEEeCCCeEEEEECC
Q psy3053 782 VYDLTTGMQVCNKVFE-EKLLCLSWAGEE--KVILGGALGMVYLVDLI 826 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~-~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~ 826 (917)
+||...+.....+..+ ....+++|.+++ .+++.+.+|.|..+++.
T Consensus 251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9999888766655554 568889998865 34555667888888864
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.68 E-value=2.5e-06 Score=87.87 Aligned_cols=235 Identities=10% Similarity=-0.056 Sum_probs=135.0
Q ss_pred eEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC
Q psy3053 625 LSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 625 V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
-..+++.++|+..++. +..+.+..++...........+-......++++++++.+++....+.+++++-.+.
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~------- 88 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN------- 88 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC-------
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc-------
Confidence 4688999999866654 45567776665543322222222234578899999988777666666666554332
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
.............+++++++++++++-..+..+..++........... .......+++++++|+.+++...++.|..+
T Consensus 89 -~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 89 -QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp -CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred -eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCEeeecccccccccc
Confidence 111122233567899999999988877777778888776544332222 233456789999999988887888888888
Q ss_pred ECCCCeEEEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEE
Q psy3053 784 DLTTGMQVCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 784 Dl~tg~~i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~I 862 (917)
|.......... ..-.....++++++ |+++++....+.|..
T Consensus 167 d~~~~~~~~~~~~~~~~p~gi~~d~~---------------------------------------g~l~vsd~~~~~i~~ 207 (260)
T d1rwia_ 167 EAESNNQVVLPFTDITAPWGIAVDEA---------------------------------------GTVYVTEHNTNQVVK 207 (260)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTT---------------------------------------CCEEEEETTTTEEEE
T ss_pred ccccceeeeeeccccCCCccceeeee---------------------------------------eeeeeeecCCCEEEE
Confidence 87654332211 11122334444433 333333333444444
Q ss_pred EECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 863 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 863 wdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
++.............-....+|+++++|..+++-..++.|+..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 208 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp ECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred EeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 443222111111112234577888888877776666666655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.65 E-value=1.4e-05 Score=82.90 Aligned_cols=233 Identities=12% Similarity=0.114 Sum_probs=157.2
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc------CCCceeEEEecCCC-CEEEEE-ECCCeEEEEeCCCC
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG------HEDAISCVAWDEKR-KRLISG-SWDCTVRVWNTGAS 696 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~------H~~~Vt~l~~spd~-~~L~Sg-s~DgtI~vWdl~~~ 696 (917)
-..++++++++++++-..++.|++||.+ |+.+..+.. ....-..+++..+. ..+++. +.++.|..++....
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 103 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ 103 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence 3678899999988887778899999865 666655532 11233456655543 334333 34457777765432
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEe
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s 775 (917)
...............+++.++|.++++....+.+.+++.. ++.+..+. ..+......+++.++|..+++..
T Consensus 104 -------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 104 -------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp -------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred -------ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeec
Confidence 0111112334567899999999988888888889998865 45555542 24566788999999999888888
Q ss_pred CCCeEEEEECCCCeEEEEeecC---CceEEEEEeCCCEEEEEeC--CCeEEEEECCCCEEEEEEecC--CCceEE--Eee
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFE---EKLLCLSWAGEEKVILGGA--LGMVYLVDLIQVQLLKQVRAH--KDAVLS--LHF 846 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~---~~i~~l~~s~~~~lv~gs~--dG~I~vwdl~~~~~i~~l~~h--~~~V~s--is~ 846 (917)
..+.|++||. +|+.+..+... .....+++++++.++++.. ++.|.+++ .+|+.+..+... ...... +.+
T Consensus 176 ~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 176 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET
T ss_pred cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC
Confidence 8899999996 45666665433 3478899998887777653 34689988 467777776432 223444 467
Q ss_pred cCCEEEEEeCCCeEEEEECcCCe
Q psy3053 847 DNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
+|.+ ++++.++.|++|......
T Consensus 254 dG~l-~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 254 DGSV-VLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp TTEE-EEEETTTEEEEEECSCCC
T ss_pred CCcE-EEEeCCCeEEEEEeeeec
Confidence 7765 455678999999987653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.4e-06 Score=93.78 Aligned_cols=327 Identities=11% Similarity=0.025 Sum_probs=182.7
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeeeec---cccceEEEEEeCCCCEEEEEe---------cccEEEEEEeccC
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVL---SSMTLSSLCILPDNCTMLVGC---------WDSCVVIYDVECG 654 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~---~~~~V~sl~~spd~~~Lasgs---------~Dg~I~Iwdl~tg 654 (917)
.|.+++.++.. ..+|.|.+||+.+++....+.. ....+....++||+++++.+. ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 46666665543 4578899999988865433332 233566778999999988764 3578999999988
Q ss_pred eeeEEe--ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC--Ccceeeecc---------CCCceEEEEE
Q psy3053 655 RIVTEL--AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP--SKSLVSQLD---------LDNRIKCLAI 721 (917)
Q Consensus 655 ~~i~~l--~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~--~~~~~~~~~---------h~~~V~~l~~ 721 (917)
...... ......+....|||||+.||-.. ++.|.+.+..++...... ........+ ....-..+.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 754432 23345566789999999998876 677888877654210000 000000000 1112257889
Q ss_pred eCCCCEEEEEECC-C---------------------------------eEEEEECCCCeeeEEecC-----CCCCCeEEE
Q psy3053 722 SKDNNQLAVGTEA-G---------------------------------ELIIWSLENHLMTQQLSD-----DINASVNGV 762 (917)
Q Consensus 722 spdg~~Lasgs~d-G---------------------------------~I~iwDl~~~~~~~~l~~-----~h~~~V~~v 762 (917)
||||+.||....| . .+.++|+.++........ ....-+..+
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence 9999999986422 1 245555554433222211 112236778
Q ss_pred EEecCCCEEEEEeC-C---CeEEEEECCCCeEEEEee--cCCc----eEEEEEeCCCE---EEEEe-CC--CeEEEEECC
Q psy3053 763 LFSEDGCRVLSCGN-N---CMLNVYDLTTGMQVCNKV--FEEK----LLCLSWAGEEK---VILGG-AL--GMVYLVDLI 826 (917)
Q Consensus 763 ~fspdg~~L~s~s~-D---g~I~iwDl~tg~~i~~~~--~~~~----i~~l~~s~~~~---lv~gs-~d--G~I~vwdl~ 826 (917)
.|+++++.++.... + ..+.++|..+|+...... ..+- -....|.+++. ++..+ .+ +.++..++.
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEec
Confidence 99999876665432 2 258889999987654332 1111 12345555553 22222 22 334444321
Q ss_pred ------CCEEEEEEecCCCceEEE---eecCCEE-EEEeCCC--eEEEEEC--cCCeEEEEec---CCCCCEEEEEEcCC
Q psy3053 827 ------QVQLLKQVRAHKDAVLSL---HFDNCTM-LVGCWDS--CVVIYDV--ECGRIVTELA---GHEDAISCVAWDEK 889 (917)
Q Consensus 827 ------~~~~i~~l~~h~~~V~si---s~dg~~L-asgs~DG--~I~Iwdl--~tg~~l~~l~---~h~~~V~slafSpd 889 (917)
.++.+..+....-.|..+ +.+++.| ++|..++ .-.+|.+ ..+.....+. .......++.|||+
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~ 420 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred cccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCC
Confidence 233333444344445554 3455554 3454432 3345543 3332222221 23445678999999
Q ss_pred CCEEEEEeCC---CcEEEEecC-cceEEEE
Q psy3053 890 RKRLISGNLV---GAPKLYATE-FYLLYVL 915 (917)
Q Consensus 890 g~~LaSgs~D---G~V~IWdl~-~~ll~~L 915 (917)
+++++..... -.+.+++.. +..+..|
T Consensus 421 ~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L 450 (465)
T d1xfda1 421 MDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (465)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCEEEEEeecCCCCeEEEEECCCCCEEEEE
Confidence 9998854332 457777765 5566655
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.63 E-value=6.2e-06 Score=87.49 Aligned_cols=238 Identities=9% Similarity=0.031 Sum_probs=149.4
Q ss_pred ceeEEEecCCCCEEEEEEC-------CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 666 AISCVAWDEKRKRLISGSW-------DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~-------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
....++|.++|+..++... +|+|..||..++...... .............++++++++.++++...+.+.
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~---~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---CCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE---CCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence 3567789999987776432 467888887765211000 000111123467899999999888888777899
Q ss_pred EEECCCCeeeEEecCCCC----CCeEEEEEecCCCEEEEEeC---------------CCeEEEEECCCCeEEEEeecCCc
Q psy3053 739 IWSLENHLMTQQLSDDIN----ASVNGVLFSEDGCRVLSCGN---------------NCMLNVYDLTTGMQVCNKVFEEK 799 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~----~~V~~v~fspdg~~L~s~s~---------------Dg~I~iwDl~tg~~i~~~~~~~~ 799 (917)
..+...+....... ... ...+.+++.++|.+.++-.. .|.|..++.. ++.......-..
T Consensus 96 ~~~~~g~~~~~~~~-~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~ 173 (314)
T d1pjxa_ 96 VVQTDGTFEEIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF 173 (314)
T ss_dssp EEETTSCEEECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred EEeCCCcEEEEEec-cccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcce
Confidence 99987654332211 111 23678999999988776432 2345555543 333332222233
Q ss_pred eEEEEEeCCC------EEEEEeCCCeEEEEECCCC-EEE-----EEEecC-CCceEE--EeecCCEEEEEeCCCeEEEEE
Q psy3053 800 LLCLSWAGEE------KVILGGALGMVYLVDLIQV-QLL-----KQVRAH-KDAVLS--LHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 800 i~~l~~s~~~------~lv~gs~dG~I~vwdl~~~-~~i-----~~l~~h-~~~V~s--is~dg~~Lasgs~DG~I~Iwd 864 (917)
.+.+++++++ .+++.+..+.|..||+... ... ..+.+. ...... +..+|++.++....+.|.+||
T Consensus 174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence 4567776543 3445566788999887533 221 122221 122233 356788888877889999999
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecC
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRL-ISGNLVGAPKLYATE 908 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~L-aSgs~DG~V~IWdl~ 908 (917)
.+.+..+..+.......++++|.||++.| +|.+.+|.|...++.
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 98887777776666788999999999755 556677888877765
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.54 E-value=8.5e-06 Score=85.64 Aligned_cols=226 Identities=13% Similarity=0.045 Sum_probs=149.2
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCc
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
+..++++|||+++++...+++|+.|+.. ++ ...+......+.+++++++|+.+++...++.+..|+...... ..
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~----~~ 103 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG----TV 103 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS----CE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc----ce
Confidence 5678999999999999999998888755 33 334455667899999999999999988888888888654311 11
Q ss_pred ceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC---------CCCCCeEEEEEecCCCEEEEEe
Q psy3053 705 SLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD---------DINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~---------~h~~~V~~v~fspdg~~L~s~s 775 (917)
..............+++.++++++++.+.++.+..++...+........ ........+.++. +..+++.+
T Consensus 104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~ 182 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNT 182 (302)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEET
T ss_pred eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecC
Confidence 1222234456688999999999998888899999999887754433221 1123455666653 33555666
Q ss_pred CCCeEEEEECCCCeEEE---EeecCCceEEEEEeCCCEEEEE-eCCCeEEEEECCCCE-EEEEEecCCCceEEEee----
Q psy3053 776 NNCMLNVYDLTTGMQVC---NKVFEEKLLCLSWAGEEKVILG-GALGMVYLVDLIQVQ-LLKQVRAHKDAVLSLHF---- 846 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~---~~~~~~~i~~l~~s~~~~lv~g-s~dG~I~vwdl~~~~-~i~~l~~h~~~V~sis~---- 846 (917)
..+.|..++........ ..........+++++++.++++ ..++.|..++..... .+......-...+++.+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~ 262 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE 262 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence 77888888876543221 1222344566888887766555 467889999875432 22333333444566644
Q ss_pred -cCCEEEEEeCC
Q psy3053 847 -DNCTMLVGCWD 857 (917)
Q Consensus 847 -dg~~Lasgs~D 857 (917)
|++.|++++..
T Consensus 263 ~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 263 GDCTAIYVVTNG 274 (302)
T ss_dssp TTTTEEEEEECT
T ss_pred CCCCEEEEECCC
Confidence 56677665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.51 E-value=9.9e-05 Score=77.97 Aligned_cols=226 Identities=8% Similarity=0.042 Sum_probs=145.9
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC----CCeEEEE
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE----AGELIIW 740 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~----dG~I~iw 740 (917)
..+..++|.++|++.++-...+.|..|+..+. ...............++++++|+++++... .+.+...
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~-------~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~ 112 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 112 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTC-------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCC-------eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence 34568899999987777778889988887654 112223344566889999999998887643 3446666
Q ss_pred ECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-E-
Q psy3053 741 SLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGN------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-V- 811 (917)
Q Consensus 741 Dl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-l- 811 (917)
+..+......... ......+.+++.++|++.++... .+.+..++...+........-.....++|++++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEE
Confidence 6666554444431 22346788999999987665432 2345555554433322222234467799998763 4
Q ss_pred EEEeCCCeEEEEECCCC-E---EEE-EE---ecCCCce--EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEec------
Q psy3053 812 ILGGALGMVYLVDLIQV-Q---LLK-QV---RAHKDAV--LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELA------ 875 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~-~---~i~-~l---~~h~~~V--~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~------ 875 (917)
++-+..+.|..|++... . ... .. ....... .++..+|++.++....|.|.++|- .|+.+..+.
T Consensus 193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~ 271 (319)
T d2dg1a1 193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE 271 (319)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC
Confidence 55566789999987532 1 111 11 1111122 334568888888888999999995 688887774
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~ 898 (917)
++...+++++|.+++..+++...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 272 GHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCceeeeEEEeCCCCEEEEEcC
Confidence 34456889999998887776553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.49 E-value=5.3e-05 Score=80.14 Aligned_cols=226 Identities=12% Similarity=0.039 Sum_probs=144.7
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc----cEEEEEEeccCe
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----SCVVIYDVECGR 655 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g~I~Iwdl~tg~ 655 (917)
...+..++|.++|++.++-...+.|..|+.+++...............+++++||+++++...+ +.+...+..++.
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3345689999999977777678889889887766555554445567889999999988776432 334444444444
Q ss_pred eeEEecc--CCCceeEEEecCCCCEEEEEECC------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 656 IVTELAG--HEDAISCVAWDEKRKRLISGSWD------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 656 ~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
....... -......+++.++|++.++.... +.+..++.... ........-.....++|+|+++.
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--------~~~~~~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--------TVTPIIQNISVANGIALSTDEKV 190 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--------CEEEEEEEESSEEEEEECTTSSE
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--------eeEEEeeccceeeeeeeccccce
Confidence 4333322 12346789999999876664321 23444443322 11111122234678999999986
Q ss_pred EEE-EECCCeEEEEECCCC-eeeE----E--ecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-
Q psy3053 728 LAV-GTEAGELIIWSLENH-LMTQ----Q--LSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE- 798 (917)
Q Consensus 728 Las-gs~dG~I~iwDl~~~-~~~~----~--l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~- 798 (917)
|.+ -+..+.|..|++... .... . ...........+++.++|++.++....+.|.++|. .|+.+..+..+.
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence 644 456789999987642 1111 1 11122234678999999998888888999999995 688888776553
Q ss_pred ------ceEEEEEeCCC-EEEEE
Q psy3053 799 ------KLLCLSWAGEE-KVILG 814 (917)
Q Consensus 799 ------~i~~l~~s~~~-~lv~g 814 (917)
.+.|+++.+.. .+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 270 DEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp GGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCCcCceeeeEEEeCCCCEEEEE
Confidence 36788887643 34443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=1.5e-05 Score=81.53 Aligned_cols=235 Identities=11% Similarity=0.054 Sum_probs=136.7
Q ss_pred EEeCC--CCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CC-----eEEEEeCCCCCCCc
Q psy3053 629 CILPD--NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DC-----TVRVWNTGASWSHM 700 (917)
Q Consensus 629 ~~spd--~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-Dg-----tI~vWdl~~~~~~~ 700 (917)
..+|| |+.+|..+ +|.|++.|+.+++.. .+..+.+.+...+|||||+.||..+. ++ .|.+++..++....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 98888764 567888899988764 56667788999999999999986542 22 36666665552111
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECC------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
.. ................+|+|+|+.++..... ..+...+...+...... ....... +.+++..++..
T Consensus 83 lt-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~ 156 (281)
T d1k32a2 83 IT-YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN----LGPATHI-LFADGRRVIGR 156 (281)
T ss_dssp CC-CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC----SCSCSEE-EEETTEEEEEE
T ss_pred ee-ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec----CCcccee-eecCCCeEEEe
Confidence 00 0001111222345678999999998876432 23555666555443322 2222233 34444443332
Q ss_pred -eCCC-----------eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCC--CeEEEEECCCCEEEEEEecCCCc
Q psy3053 775 -GNNC-----------MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGAL--GMVYLVDLIQVQLLKQVRAHKDA 840 (917)
Q Consensus 775 -s~Dg-----------~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~d--G~I~vwdl~~~~~i~~l~~h~~~ 840 (917)
..+. .........+................+.++..+.....+ ..|.++|+.++............
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~ 236 (281)
T d1k32a2 157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY 236 (281)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC
T ss_pred eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCcc
Confidence 2111 122222223333333334444556666777444544444 36778888766544332334456
Q ss_pred eEEEeecCCEEEEEeCCCeEEEEECcCCeEEE
Q psy3053 841 VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVT 872 (917)
Q Consensus 841 V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~ 872 (917)
+..+++||+.|+.. .+|.|+++|+.+++...
T Consensus 237 ~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 237 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred cccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 67789999987764 46889999998887654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.2e-05 Score=90.15 Aligned_cols=273 Identities=13% Similarity=0.079 Sum_probs=160.7
Q ss_pred EEeCCCCEEEEEecccEEEEEEeccCeeeEEeccC---CCceeEEEecCCCCEEEEEE---------CCCeEEEEeCCCC
Q psy3053 629 CILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH---EDAISCVAWDEKRKRLISGS---------WDCTVRVWNTGAS 696 (917)
Q Consensus 629 ~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H---~~~Vt~l~~spd~~~L~Sgs---------~DgtI~vWdl~~~ 696 (917)
.|.+++.++. -..+|.|.+||+.+++....+..+ .-.+....+|||+++++.+. ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 4777776554 345788999999988765444432 23577888999999988764 3567888998876
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe-----------------
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV----------------- 759 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V----------------- 759 (917)
.. ..+.........+....|||+|+.+|... ++.|.+.+..++...+....+..+.|
T Consensus 102 ~~-----~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~ 175 (465)
T d1xfda1 102 DP-----QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (465)
T ss_dssp CC-----EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ce-----eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence 21 11111122334566788999999998866 56899999888776665543332222
Q ss_pred EEEEEecCCCEEEEEeCC-C---------------------------------eEEEEECCCCeEEEEeec-------CC
Q psy3053 760 NGVLFSEDGCRVLSCGNN-C---------------------------------MLNVYDLTTGMQVCNKVF-------EE 798 (917)
Q Consensus 760 ~~v~fspdg~~L~s~s~D-g---------------------------------~I~iwDl~tg~~i~~~~~-------~~ 798 (917)
.++-|||||+.||....| . .+.++|+.++........ ..
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~ 255 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence 467799999999976422 1 244555544332211110 11
Q ss_pred ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEEEecC-CC------ceEEEeecCCEEE---EEeCCC--eEE
Q psy3053 799 KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQVRAH-KD------AVLSLHFDNCTML---VGCWDS--CVV 861 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~l~~h-~~------~V~sis~dg~~La---sgs~DG--~I~ 861 (917)
-+..+.|.+++.+++...+ ..+.++|..+++....+..+ .+ ....++++|+.++ ....+| .+.
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly 335 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceE
Confidence 2567889888876654332 36888999998766554322 22 2234466777432 222233 333
Q ss_pred EEECc------CCeEEEEecCCCCCEEEE-EEcCCCCEEEE-EeCC--CcEEEEecC
Q psy3053 862 IYDVE------CGRIVTELAGHEDAISCV-AWDEKRKRLIS-GNLV--GAPKLYATE 908 (917)
Q Consensus 862 Iwdl~------tg~~l~~l~~h~~~V~sl-afSpdg~~LaS-gs~D--G~V~IWdl~ 908 (917)
...+. .++.+..+....-.|..+ +|+++++.++- +..+ +.-.+|.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence 33321 233334444334456665 68888777653 3333 233455543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.22 E-value=8e-05 Score=75.73 Aligned_cols=231 Identities=11% Similarity=-0.007 Sum_probs=130.2
Q ss_pred EecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-C-----CeEEEEEC
Q psy3053 671 AWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-A-----GELIIWSL 742 (917)
Q Consensus 671 ~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-d-----G~I~iwDl 742 (917)
..+|+ |+.++-.+ +|.|.+.|+.++ ....+..+...+...+|||||+.||.... + +.|.+++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g--------~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~ 75 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSG--------STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 75 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTC--------CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCC--------CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence 35788 88888765 566777788776 33344556677889999999999986542 2 24888888
Q ss_pred CCCeeeEEecC-----CCCCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 743 ENHLMTQQLSD-----DINASVNGVLFSEDGCRVLSCGNN------CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 743 ~~~~~~~~l~~-----~h~~~V~~v~fspdg~~L~s~s~D------g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
.+++..+.... .........+|+|+|+.++..... ..+...+...+..... .........+.+.+..
T Consensus 76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 153 (281)
T d1k32a2 76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHILFADGRRV 153 (281)
T ss_dssp TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEEEEETTEEE
T ss_pred cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--cCCccceeeecCCCeE
Confidence 88876543321 112345678999999998876432 2355566555544322 1222222223333233
Q ss_pred EEEeCC------------CeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe-CC--CeEEEEECcCCeEEEEecC
Q psy3053 812 ILGGAL------------GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC-WD--SCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 812 v~gs~d------------G~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs-~D--G~I~Iwdl~tg~~l~~l~~ 876 (917)
+..... ................ ..+........+.+..++... .+ ..|.++|+.++........
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~ 232 (281)
T d1k32a2 154 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSF 232 (281)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred EEeeccccceeeeeccCCcceeeeeccccceeec-cCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecC
Confidence 222111 1111222222222222 222333333334444444433 33 3577788876665433222
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEEEe
Q psy3053 877 HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 877 h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~Lt 916 (917)
....+ ..|||||+.|+.. .+|.|+++|+++.....+.
T Consensus 233 ~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 233 TDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp CSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred CCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence 22233 4689999998864 4688999999987766553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.00099 Score=69.19 Aligned_cols=217 Identities=11% Similarity=0.051 Sum_probs=140.6
Q ss_pred EEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee
Q psy3053 669 CVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM 747 (917)
Q Consensus 669 ~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~ 747 (917)
+..|++....|.-. -..+.|..||..++ . .........+.++++.++|.++++ +.+ .+..+|..+++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g--------~-~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~ 90 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASG--------R-KTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVL 90 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTT--------E-EEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCC--------e-EEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeeccccee
Confidence 44566544444333 35677888887665 1 122334567889999999876665 555 588999998876
Q ss_pred eEEecCC---CCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE--EEEEeCCC
Q psy3053 748 TQQLSDD---INASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK--VILGGALG 818 (917)
Q Consensus 748 ~~~l~~~---h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~--lv~gs~dG 818 (917)
....... ....++.+.+.|+|++.++... .+.-.+|.+..++.......-.....+++++++. +++.+..+
T Consensus 91 ~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 91 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccc
Confidence 5443211 2236789999999987766542 2344566666776554444444567888887663 45666678
Q ss_pred eEEEEECCCC--------EEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc-
Q psy3053 819 MVYLVDLIQV--------QLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD- 887 (917)
Q Consensus 819 ~I~vwdl~~~--------~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS- 887 (917)
.|..+++... .......+..+....+ ..+|++.++.-..|.|..||. .|+.+..+.-....+++++|-
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG 249 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG 249 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeC
Confidence 9999987421 1122222333444455 457887777777889999995 688888887666679999995
Q ss_pred CCCCEEEEEe
Q psy3053 888 EKRKRLISGN 897 (917)
Q Consensus 888 pdg~~LaSgs 897 (917)
+|.+.|+..+
T Consensus 250 ~d~~~LyvTt 259 (295)
T d2ghsa1 250 PDASRLLVTS 259 (295)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 6777666443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.18 E-value=0.00025 Score=76.23 Aligned_cols=165 Identities=8% Similarity=-0.015 Sum_probs=105.2
Q ss_pred ceEEEEEeCCCCEEEEEec-ccEEEEEEeccC-eee--EEe--ccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCC
Q psy3053 624 TLSSLCILPDNCTMLVGCW-DSCVVIYDVECG-RIV--TEL--AGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGAS 696 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg-~~i--~~l--~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~ 696 (917)
.+.++.|+|||+++++++. ...|.+|+.... ... ... .........++|+|+++++++.. .+++|.+|+....
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 4678999999998887754 567888886543 222 111 12345788999999999886655 5789999998765
Q ss_pred CCCccCCccee------------eeccCCCceEEEEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEe-----cC
Q psy3053 697 WSHMKPSKSLV------------SQLDLDNRIKCLAISKDNNQLAVGTE------AGELIIWSLENHLMTQQL-----SD 753 (917)
Q Consensus 697 ~~~~~~~~~~~------------~~~~h~~~V~~l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l-----~~ 753 (917)
........... ...........+.++|+|++++++.. .+.|..|++.....+... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 305 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence 21110000000 01122234567899999999888743 234777777543222111 11
Q ss_pred CCCCCeEEEEEec-CCCEEEEEe-CCCeEEEEECCCC
Q psy3053 754 DINASVNGVLFSE-DGCRVLSCG-NNCMLNVYDLTTG 788 (917)
Q Consensus 754 ~h~~~V~~v~fsp-dg~~L~s~s-~Dg~I~iwDl~tg 788 (917)
.......+++++| +|++|+++. .++.|.+|++...
T Consensus 306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 2345567899998 899887775 6789999987544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.05 E-value=0.0022 Score=66.38 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=136.0
Q ss_pred EEEEeCCC-cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc-
Q psy3053 585 AVAICGEG-ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG- 662 (917)
Q Consensus 585 sv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~- 662 (917)
+..|++.. .+.++--..+.|.-||..+++.. .+. ....+.++++.+++.++++ +.+ .+.++|..+++.......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 34577644 44444446778888888877543 222 2345778888888876665 444 588999998876443321
Q ss_pred ---CCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE-ECC
Q psy3053 663 ---HEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG-TEA 734 (917)
Q Consensus 663 ---H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~d 734 (917)
....++.+.+.++|++.++...+ +.-.+|.+..+ ........-.....++|+++++.+..+ +..
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g--------~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG--------KVTKLFADISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT--------EEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC--------cEEEEeeccCCcceeeecCCCceEEEeeccc
Confidence 12357889999999877765432 23345554333 111222223345789999999866544 557
Q ss_pred CeEEEEECCCC------ee-eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CceEEEEEe
Q psy3053 735 GELIIWSLENH------LM-TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-EKLLCLSWA 806 (917)
Q Consensus 735 G~I~iwDl~~~------~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-~~i~~l~~s 806 (917)
+.|..+++... +. .........+....+++..+|++.++.-..+.|..||. .|+.+..+..+ ..+++++|-
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence 88988887421 11 11111134556788999999988887778889999995 68888888876 468999997
Q ss_pred C
Q psy3053 807 G 807 (917)
Q Consensus 807 ~ 807 (917)
+
T Consensus 249 G 249 (295)
T d2ghsa1 249 G 249 (295)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.74 E-value=0.0053 Score=69.66 Aligned_cols=299 Identities=11% Similarity=0.021 Sum_probs=169.2
Q ss_pred CCcEEEEEecCCceEEEec-cCCceeeeeeccc----cce-------EEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 591 EGISVASVGRDAMLKIHSL-KTGRQERSAVLSS----MTL-------SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~-~t~~~~~~~~~~~----~~V-------~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
+|...++.+.++.|...|. ++|+.+.++.... ... ..+++. +..++.++.||.+.-.|.++|+...
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 4433333334677777776 4688776653211 011 122332 3467788899999999999999876
Q ss_pred EeccCC----CceeEEEecCCCCEEEEEE------CCCeEEEEeCCCCCCCccCCcce----------------------
Q psy3053 659 ELAGHE----DAISCVAWDEKRKRLISGS------WDCTVRVWNTGASWSHMKPSKSL---------------------- 706 (917)
Q Consensus 659 ~l~~H~----~~Vt~l~~spd~~~L~Sgs------~DgtI~vWdl~~~~~~~~~~~~~---------------------- 706 (917)
...... ..++.--.-.+ ..++.++ .+|.|.-+|..++..........
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 653211 11111111113 3444444 36789999998875222100000
Q ss_pred --------eeeccCCCce-EEEEEeCCCCEEEEEEC----------------CCeEEEEECCCCeeeEEecCCCC-----
Q psy3053 707 --------VSQLDLDNRI-KCLAISKDNNQLAVGTE----------------AGELIIWSLENHLMTQQLSDDIN----- 756 (917)
Q Consensus 707 --------~~~~~h~~~V-~~l~~spdg~~Lasgs~----------------dG~I~iwDl~~~~~~~~l~~~h~----- 756 (917)
.........+ ...+++++...+..+.. ...+...|.++|+....++..+.
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~ 298 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence 0000001112 24566777777766654 34678889999998887763221
Q ss_pred ---CCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCC---------------------------c--e-
Q psy3053 757 ---ASVNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEE---------------------------K--L- 800 (917)
Q Consensus 757 ---~~V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~---------------------------~--i- 800 (917)
..........+|+ .++.++.+|.+.+.|..+|+.+....... . .
T Consensus 299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 378 (571)
T d2ad6a1 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEE
Confidence 1222222333554 46778899999999999998874322110 0 0
Q ss_pred ----------EEEEEeCCC-EEEEEe-------------------------------------CCCeEEEEECCCCEEEE
Q psy3053 801 ----------LCLSWAGEE-KVILGG-------------------------------------ALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 801 ----------~~l~~s~~~-~lv~gs-------------------------------------~dG~I~vwdl~~~~~i~ 832 (917)
...+++|+. .+++.. ..|.|.-+|+.+++.+-
T Consensus 379 ~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W 458 (571)
T d2ad6a1 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred EeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceee
Confidence 012334321 222211 12578888999998876
Q ss_pred EEecCCCceE-EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC----CCCEEEEEEcCCCC-EEEE
Q psy3053 833 QVRAHKDAVL-SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH----EDAISCVAWDEKRK-RLIS 895 (917)
Q Consensus 833 ~l~~h~~~V~-sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h----~~~V~slafSpdg~-~LaS 895 (917)
+......... .++-.+.++++|+.||.++.+|.++|+.+.++.-. ..+ +.+..||+ ++++
T Consensus 459 ~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P---~ty~~dGkqYi~v 524 (571)
T d2ad6a1 459 TKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP---MTYSFKGKQYIGS 524 (571)
T ss_dssp EEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEE
T ss_pred EcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc---eEEEECCEEEEEE
Confidence 6643211111 22446778889999999999999999999887532 233 44555776 4444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.68 E-value=0.0063 Score=64.99 Aligned_cols=214 Identities=10% Similarity=0.008 Sum_probs=134.7
Q ss_pred CCCEEEEEe-cccEEEEEEeccCeeeEEecc-CCCceeEEEec--CCCCEEEEEECCC------------------eEEE
Q psy3053 633 DNCTMLVGC-WDSCVVIYDVECGRIVTELAG-HEDAISCVAWD--EKRKRLISGSWDC------------------TVRV 690 (917)
Q Consensus 633 d~~~Lasgs-~Dg~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~s--pd~~~L~Sgs~Dg------------------tI~v 690 (917)
||+++++.. .++.|.+.|+++.++.+.+.- ....+..++.. |+..+++.++.+. .+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 688887765 578999999999888665432 33456666654 4566888777643 3566
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----------------------------------
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG----------------------------------- 735 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG----------------------------------- 735 (917)
+|..+. .......-......++++++|+++++.+.+.
T Consensus 178 ID~~tm--------~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ 249 (459)
T d1fwxa2 178 VDADKW--------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 249 (459)
T ss_dssp EETTTT--------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EecCCc--------eEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence 777654 2222222344567889999999999877431
Q ss_pred ---eEEEEECCCC---eeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC------------eEEEEeec
Q psy3053 736 ---ELIIWSLENH---LMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTG------------MQVCNKVF 796 (917)
Q Consensus 736 ---~I~iwDl~~~---~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg------------~~i~~~~~ 796 (917)
.+.+.|.+.. ..+..+. .......+.++|||+++++++ -+.++.++|++.- ........
T Consensus 250 eingV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 250 ELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp EETTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred EeCCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 1233333321 1122221 223456789999999988776 4789999998631 12233344
Q ss_pred CCceEEEEEeCCCEEEE-EeCCCeEEEEECCCC----------EEEEEEecCCCceEEE-------eecCCEEEEEeC
Q psy3053 797 EEKLLCLSWAGEEKVIL-GGALGMVYLVDLIQV----------QLLKQVRAHKDAVLSL-------HFDNCTMLVGCW 856 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~-gs~dG~I~vwdl~~~----------~~i~~l~~h~~~V~si-------s~dg~~Lasgs~ 856 (917)
.-.....+++++|...+ ---|..|.-|++... ..+..+..|-..=.-. .++|++|++...
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 55567778888886444 347899999998432 4556665543322111 568999998863
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.65 E-value=0.018 Score=64.90 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=171.7
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeecccc----c------e-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSM----T------L-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~----~------V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
..|+.++.++.|.-.|..+|+.+.++..... . + ..++. .+..++.++.|+.+.-.|..+|+.+....
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 3566777888898899999988876532110 0 0 11111 24578888999999999999999887765
Q ss_pred cCCCc-eeEEEecC--CCCEEEEEEC------CCeEEEEeCCCCCCCccCCcc-----e--e----------------ee
Q psy3053 662 GHEDA-ISCVAWDE--KRKRLISGSW------DCTVRVWNTGASWSHMKPSKS-----L--V----------------SQ 709 (917)
Q Consensus 662 ~H~~~-Vt~l~~sp--d~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~-----~--~----------------~~ 709 (917)
.+... -..+.-.| .+..++.++. .|.|.-+|..++....+.... . . ..
T Consensus 145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (560)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence 32211 00111111 1233444332 256888888877422110000 0 0 00
Q ss_pred ccCCCc-eEEEEEeCCCCEEEEEEC-------------------CCeEEEEECCCCeeeEEecCCCCC--------CeEE
Q psy3053 710 LDLDNR-IKCLAISKDNNQLAVGTE-------------------AGELIIWSLENHLMTQQLSDDINA--------SVNG 761 (917)
Q Consensus 710 ~~h~~~-V~~l~~spdg~~Lasgs~-------------------dG~I~iwDl~~~~~~~~l~~~h~~--------~V~~ 761 (917)
...... =..+++.+...++..+.. ...|.-.|+++++....++..+.+ ...-
T Consensus 225 ~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l 304 (560)
T d1kv9a2 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL 304 (560)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred ccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence 000111 123566777776665432 235777899999988766532221 1122
Q ss_pred EEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc-------------------------e------------E
Q psy3053 762 VLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-------------------------L------------L 801 (917)
Q Consensus 762 v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~-------------------------i------------~ 801 (917)
+....+|+ .++.++.+|.+.++|..+|+.+........ + .
T Consensus 305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~ 384 (560)
T d1kv9a2 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWH 384 (560)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSS
T ss_pred eeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccc
Confidence 22333443 566788899999999999998765432110 0 0
Q ss_pred EEEEeCCC-EEEEEe------------------------------------CCCeEEEEECCCCEEEEEEecCCCce-EE
Q psy3053 802 CLSWAGEE-KVILGG------------------------------------ALGMVYLVDLIQVQLLKQVRAHKDAV-LS 843 (917)
Q Consensus 802 ~l~~s~~~-~lv~gs------------------------------------~dG~I~vwdl~~~~~i~~l~~h~~~V-~s 843 (917)
..+++|+. .+++.. ..|.+.-+|+.+++.+-+........ -.
T Consensus 385 ~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~ 464 (560)
T d1kv9a2 385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGT 464 (560)
T ss_dssp CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred cccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCce
Confidence 22333332 222211 13678899999999887765322111 12
Q ss_pred EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCC-EEEE
Q psy3053 844 LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRK-RLIS 895 (917)
Q Consensus 844 is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~-~LaS 895 (917)
++-.+.++++|+.||.++.+|.++|+.+.++....... .-+.+..+|+ +|+.
T Consensus 465 l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v 518 (560)
T d1kv9a2 465 LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (560)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 35567888899999999999999999998876432111 1134556776 4444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.62 E-value=0.019 Score=65.26 Aligned_cols=299 Identities=12% Similarity=0.066 Sum_probs=168.3
Q ss_pred CCcEEEEEecCCceEEEec-cCCceeeeeeccc----cc-------eEEEEEeCC----CCEEEEEecccEEEEEEeccC
Q psy3053 591 EGISVASVGRDAMLKIHSL-KTGRQERSAVLSS----MT-------LSSLCILPD----NCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~-~t~~~~~~~~~~~----~~-------V~sl~~spd----~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
+|...++++.++.+...|. ++|+.+.++.... .. -..+++.++ ...++.++.|+.|.-.|.++|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 3433334444566666665 4677665543211 00 123444433 346888999999999999999
Q ss_pred eeeEEeccCC----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCcce-----------------
Q psy3053 655 RIVTELAGHE----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSKSL----------------- 706 (917)
Q Consensus 655 ~~i~~l~~H~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~~----------------- 706 (917)
+.+..+.... ..++. -.+. +..++.++. .|.|.-+|..++....+.....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~ 219 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred ceeccccccccccccccccCCcEE--CCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence 9988764211 11111 1111 245555543 4889999998875222100000
Q ss_pred --------------eeeccCCCceEEEEEeCCCCEEEEEECC----------------CeEEEEECCCCeeeEEecCCCC
Q psy3053 707 --------------VSQLDLDNRIKCLAISKDNNQLAVGTEA----------------GELIIWSLENHLMTQQLSDDIN 756 (917)
Q Consensus 707 --------------~~~~~h~~~V~~l~~spdg~~Lasgs~d----------------G~I~iwDl~~~~~~~~l~~~h~ 756 (917)
....+....-..+++.+...++..+..+ ..+.-.|+++|+....++..+.
T Consensus 220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~ 299 (596)
T d1w6sa_ 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (596)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceec
Confidence 0000111112345667777777666432 3588899999999887763322
Q ss_pred C--------CeEEEEE-ecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc--------------e----------
Q psy3053 757 A--------SVNGVLF-SEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK--------------L---------- 800 (917)
Q Consensus 757 ~--------~V~~v~f-spdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~--------------i---------- 800 (917)
+ ....+.. ..+|+ .++.+..+|.+.++|..+|+.+........ +
T Consensus 300 D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~ 379 (596)
T d1w6sa_ 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (596)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred cccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCC
Confidence 1 1111221 23443 577788899999999999988754332110 0
Q ss_pred ----------------EEEEEeCCC-EEEEEe---------------------------------------CCCeEEEEE
Q psy3053 801 ----------------LCLSWAGEE-KVILGG---------------------------------------ALGMVYLVD 824 (917)
Q Consensus 801 ----------------~~l~~s~~~-~lv~gs---------------------------------------~dG~I~vwd 824 (917)
...+++|+. .+.+.. ..|.|.-||
T Consensus 380 ~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D 459 (596)
T d1w6sa_ 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (596)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred ccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEe
Confidence 011233321 111110 125788889
Q ss_pred CCCCEEEEEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC----CCCEEEEEEcCCCC-EEE
Q psy3053 825 LIQVQLLKQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH----EDAISCVAWDEKRK-RLI 894 (917)
Q Consensus 825 l~~~~~i~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h----~~~V~slafSpdg~-~La 894 (917)
+.+++.+-+........ -.++-.+.++++|+.||.++.+|.++|+.+.++... ..+++ +..+|+ +++
T Consensus 460 ~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t---Y~~dGkQYva 532 (596)
T d1w6sa_ 460 AITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT---YTHKGTQYVA 532 (596)
T ss_dssp TTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETTEEEEE
T ss_pred CCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeE---EEECCEEEEE
Confidence 99998776653221111 112446788889999999999999999999887532 33443 445776 344
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.62 E-value=0.012 Score=66.74 Aligned_cols=311 Identities=13% Similarity=0.105 Sum_probs=178.8
Q ss_pred EEEEEecCCceEEEeccCCceeeeeeccc----------cce-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 594 SVASVGRDAMLKIHSLKTGRQERSAVLSS----------MTL-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 594 ~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~----------~~V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
.|+.++.++.|.-+|.++|+.+.+..... ..+ ..+... +..++.++.|+.+.-.|..+|+.+.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence 56777888999999999999887653211 001 112222 34677788899999999999998766543
Q ss_pred C--C-CceeEEEecC--CCCEEEEEEC------CCeEEEEeCCCCCCCccCC-----ccee-------------------
Q psy3053 663 H--E-DAISCVAWDE--KRKRLISGSW------DCTVRVWNTGASWSHMKPS-----KSLV------------------- 707 (917)
Q Consensus 663 H--~-~~Vt~l~~sp--d~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~-----~~~~------------------- 707 (917)
. . ..+. +.-.| -+..+++++. .|.|..+|..++....... ....
T Consensus 157 ~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~ 235 (573)
T d1kb0a2 157 FEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (573)
T ss_dssp TTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred ccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence 2 1 1111 11111 1234555432 4679999988874221100 0000
Q ss_pred eeccCCCce-EEEEEeCCCCEEEEEEC-------------------CCeEEEEECCCCeeeEEecCCC--------CCCe
Q psy3053 708 SQLDLDNRI-KCLAISKDNNQLAVGTE-------------------AGELIIWSLENHLMTQQLSDDI--------NASV 759 (917)
Q Consensus 708 ~~~~h~~~V-~~l~~spdg~~Lasgs~-------------------dG~I~iwDl~~~~~~~~l~~~h--------~~~V 759 (917)
........+ ...++.++...+..+.. ...|.-.|+++++.....+..+ ..+.
T Consensus 236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~ 315 (573)
T d1kb0a2 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM 315 (573)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence 000001112 23566676666654432 1247778888888776655321 1122
Q ss_pred EEEEEecCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCCc------------------------------------e
Q psy3053 760 NGVLFSEDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK------------------------------------L 800 (917)
Q Consensus 760 ~~v~fspdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~------------------------------------i 800 (917)
.......++ ..++.++.+|.+.++|..+|+.+........ -
T Consensus 316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w 395 (573)
T d1kb0a2 316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW 395 (573)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred eecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccc
Confidence 222233343 3567788899999999999988754331100 0
Q ss_pred EEEEEeCCC-EEEEEeC-------------------------------------------CCeEEEEECCCCEEEEEEec
Q psy3053 801 LCLSWAGEE-KVILGGA-------------------------------------------LGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 801 ~~l~~s~~~-~lv~gs~-------------------------------------------dG~I~vwdl~~~~~i~~l~~ 836 (917)
...+++|+. .+++... -|.+.-||+.+++.+-+...
T Consensus 396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~ 475 (573)
T d1kb0a2 396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH 475 (573)
T ss_dssp SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred cccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecC
Confidence 012333332 1221100 15688899999998887764
Q ss_pred CCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC----CCCEEEEEEcCCCC-EEEEEeC------------
Q psy3053 837 HKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH----EDAISCVAWDEKRK-RLISGNL------------ 898 (917)
Q Consensus 837 h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h----~~~V~slafSpdg~-~LaSgs~------------ 898 (917)
..... -.++-.+.++++|+.||.++.+|.++|+.+.++... ..+ +.|..+|+ +++..+.
T Consensus 476 ~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~~G~gg~~~~~~~~~ 552 (573)
T d1kb0a2 476 VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVAVGWGGVYGLAARAT 552 (573)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEECCCHHHHHHCCSC
T ss_pred CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeCCCcccccccccc
Confidence 33211 234668889999999999999999999999887642 233 34455786 3333221
Q ss_pred ----CCcEEEEecCcc
Q psy3053 899 ----VGAPKLYATEFY 910 (917)
Q Consensus 899 ----DG~V~IWdl~~~ 910 (917)
.+.|.+|.+++.
T Consensus 553 ~~~~~~~~~~F~l~g~ 568 (573)
T d1kb0a2 553 ERQGPGTVYTFVVGGK 568 (573)
T ss_dssp SCCCCCEEEEEEETCB
T ss_pred cCCCCCEEEEEEeCCc
Confidence 235777777754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.52 E-value=0.06 Score=54.10 Aligned_cols=226 Identities=8% Similarity=-0.072 Sum_probs=141.3
Q ss_pred CceEEEeccCCcee-----eeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCceeEEEecCC
Q psy3053 602 AMLKIHSLKTGRQE-----RSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 675 (917)
Q Consensus 602 g~I~IWd~~t~~~~-----~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd 675 (917)
+.|+-.+++..... ..+..+...+..+++.+.++.|..+ ..++.|+..+++.+.....+......+.++++..-
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~ 89 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence 45555555433221 1233344456778898877766665 45678888888766555555444467889999876
Q ss_pred CCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCeeeEEe
Q psy3053 676 RKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---GELIIWSLENHLMTQQL 751 (917)
Q Consensus 676 ~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---G~I~iwDl~~~~~~~~l 751 (917)
+..|..+ ...+.|.+.++.... ........-..+..++++|...++...... +.|.--++.........
T Consensus 90 ~~~lY~~d~~~~~I~~~~~dg~~-------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~ 162 (263)
T d1npea_ 90 GRTIFWTDSQLDRIEVAKMDGTQ-------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred CCeEEEeccCCCEEEEEecCCce-------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee
Confidence 6666544 456799999987541 111112223568899999988777655432 23555566544333333
Q ss_pred cCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
. ..-....++++.+.++.|..+ ...+.|...++.................+++..+..+++-...+.|...|..+++.
T Consensus 163 ~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 163 Q-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp C-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEE
T ss_pred e-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCCcc
Confidence 2 334567899999887777655 45678988888655443333333445678887653344545668888889888887
Q ss_pred EEEEe
Q psy3053 831 LKQVR 835 (917)
Q Consensus 831 i~~l~ 835 (917)
+..+.
T Consensus 242 ~~~~~ 246 (263)
T d1npea_ 242 MDTFH 246 (263)
T ss_dssp EEEEC
T ss_pred ceEEC
Confidence 76653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.49 E-value=0.016 Score=65.62 Aligned_cols=261 Identities=15% Similarity=0.078 Sum_probs=147.8
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccc----cceEEEEEeCCCCEEEEEe------cccEEEEEEeccCeeeEEecc
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSS----MTLSSLCILPDNCTMLVGC------WDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~----~~V~sl~~spd~~~Lasgs------~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
..++.++.||.+...|.++|+......... ..+++--...++ .++++. .+|.|+-+|..+|+.+.....
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 457778889999999999998876554321 111111111234 344443 367899999999999876542
Q ss_pred CC-------------------------------------Cce-eEEEecCCCCEEEEEECC----------------CeE
Q psy3053 663 HE-------------------------------------DAI-SCVAWDEKRKRLISGSWD----------------CTV 688 (917)
Q Consensus 663 H~-------------------------------------~~V-t~l~~spd~~~L~Sgs~D----------------gtI 688 (917)
.. ..+ ...++.+....++.+..+ ..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv 274 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence 11 111 224555555555554432 345
Q ss_pred EEEeCCCCCCCccCCc--ceeeeccCCCceEEEEEeCCCC---EEEEEECCCeEEEEECCCCeeeEEecCCC--------
Q psy3053 689 RVWNTGASWSHMKPSK--SLVSQLDLDNRIKCLAISKDNN---QLAVGTEAGELIIWSLENHLMTQQLSDDI-------- 755 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~--~~~~~~~h~~~V~~l~~spdg~---~Lasgs~dG~I~iwDl~~~~~~~~l~~~h-------- 755 (917)
...|.+++........ .-.-............+..+++ .++.++.+|.+.++|..+|+.+.......
T Consensus 275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~ 354 (571)
T d2ad6a1 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV 354 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence 5556665521110000 0000001112222233333443 56778899999999999998764322100
Q ss_pred ----------------------------CC--CeEEEEEecCCCEEEEEeCC----------------------------
Q psy3053 756 ----------------------------NA--SVNGVLFSEDGCRVLSCGNN---------------------------- 777 (917)
Q Consensus 756 ----------------------------~~--~V~~v~fspdg~~L~s~s~D---------------------------- 777 (917)
.+ .-...+++|+...+++...+
T Consensus 355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (571)
T d2ad6a1 355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence 00 00125677776666543322
Q ss_pred ---------CeEEEEECCCCeEEEEeecCCceEE-EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC----CCceEE
Q psy3053 778 ---------CMLNVYDLTTGMQVCNKVFEEKLLC-LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH----KDAVLS 843 (917)
Q Consensus 778 ---------g~I~iwDl~tg~~i~~~~~~~~i~~-l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h----~~~V~s 843 (917)
|.|.-+|+.+|+.+..........+ ......+.+++|+.||.++.+|.++|+.+-++... ..+++-
T Consensus 435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty 514 (571)
T d2ad6a1 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTY 514 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred cCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEE
Confidence 4688889999988877665543322 11224558889999999999999999999887532 223322
Q ss_pred EeecCC-EEEEEe
Q psy3053 844 LHFDNC-TMLVGC 855 (917)
Q Consensus 844 is~dg~-~Lasgs 855 (917)
..||+ +|++..
T Consensus 515 -~~dGkqYi~v~~ 526 (571)
T d2ad6a1 515 -SFKGKQYIGSMY 526 (571)
T ss_dssp -EETTEEEEEEEE
T ss_pred -EECCEEEEEEEe
Confidence 34665 454433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.48 E-value=0.012 Score=62.11 Aligned_cols=269 Identities=10% Similarity=0.040 Sum_probs=145.7
Q ss_pred ceEEEEEeCCCCEEEEEeccc-----------EEEEEEeccCeeeEE---eccCCCceeEEEecCCCCEEEEEECC-CeE
Q psy3053 624 TLSSLCILPDNCTMLVGCWDS-----------CVVIYDVECGRIVTE---LAGHEDAISCVAWDEKRKRLISGSWD-CTV 688 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg-----------~I~Iwdl~tg~~i~~---l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI 688 (917)
++...+...+++.++.|+.+. .+.+||..+++-... ...|.....+.++.+++..++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 334444556788888887531 377899988754321 22344444566788899999988765 589
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC------CeEEEEECCCCeeeEEecC--------C
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA------GELIIWSLENHLMTQQLSD--------D 754 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~--------~ 754 (917)
.+||..+..-.. .........-.+.+..++|++++.|+.+ ..+.+||..+.+-...-.. .
T Consensus 101 ~~yd~~~~~w~~------~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 174 (387)
T d1k3ia3 101 SLYDSSSDSWIP------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 174 (387)
T ss_dssp EEEEGGGTEEEE------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred eEecCccCcccc------cccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccc
Confidence 999987652110 0111112223456777899999998753 3589999988754322110 0
Q ss_pred C-----CCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec--C-----C--ceEEEEEe-CCC-EEEEEeCC-
Q psy3053 755 I-----NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--E-----E--KLLCLSWA-GEE-KVILGGAL- 817 (917)
Q Consensus 755 h-----~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--~-----~--~i~~l~~s-~~~-~lv~gs~d- 817 (917)
+ ...-..+...++|+.++.++.++.+.+++..+......... . . .-.++... .++ .++.|+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~ 254 (387)
T d1k3ia3 175 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 254 (387)
T ss_dssp TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred ccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccC
Confidence 0 00111233445777788777778888888877654432211 1 0 01122222 233 34454432
Q ss_pred -------CeEEEEECCC---CEEEEEEec----CCCc-eEEEeecCCEEEEEeCC-----------CeEEEEECcCCeEE
Q psy3053 818 -------GMVYLVDLIQ---VQLLKQVRA----HKDA-VLSLHFDNCTMLVGCWD-----------SCVVIYDVECGRIV 871 (917)
Q Consensus 818 -------G~I~vwdl~~---~~~i~~l~~----h~~~-V~sis~dg~~Lasgs~D-----------G~I~Iwdl~tg~~l 871 (917)
....+.+... ......... .... -..+.+|++++++|+.+ .++.+||..+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~ 334 (387)
T d1k3ia3 255 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 334 (387)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE
Confidence 1233333321 111111110 1111 12225689999998853 14789999887653
Q ss_pred EEecCCCCC--EEEEEEcCCCCEEEEEeC
Q psy3053 872 TELAGHEDA--ISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 872 ~~l~~h~~~--V~slafSpdg~~LaSgs~ 898 (917)
..-.....+ -......+||+.++.|+.
T Consensus 335 ~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 335 KQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 321111111 123446799999999884
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.23 E-value=0.27 Score=55.12 Aligned_cols=301 Identities=12% Similarity=0.103 Sum_probs=166.9
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccc--------cce-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc-
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSS--------MTL-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG- 662 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~--------~~V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~- 662 (917)
..|++++.++.|.-.|..+|+.+.++.... ..+ ..++. .+..++.++.|+.+.-.|..+|+.+.....
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeeccc
Confidence 467777888999999999999887653211 001 11222 245678889999999999999988754321
Q ss_pred -CCC--ce--eEEEecC--CCCEEEEE-------ECCCeEEEEeCCCCCCCccCC---cce-------------------
Q psy3053 663 -HED--AI--SCVAWDE--KRKRLISG-------SWDCTVRVWNTGASWSHMKPS---KSL------------------- 706 (917)
Q Consensus 663 -H~~--~V--t~l~~sp--d~~~L~Sg-------s~DgtI~vWdl~~~~~~~~~~---~~~------------------- 706 (917)
+.. .. .-....+ .+..++.. +..+.|.-+|..++....... ...
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 110 00 0011111 12222222 123456666666553111000 000
Q ss_pred -----------ee-eccCCCceEEEEEeCCCCEEEEEEC------------------------CCeEEEEECCCCeeeEE
Q psy3053 707 -----------VS-QLDLDNRIKCLAISKDNNQLAVGTE------------------------AGELIIWSLENHLMTQQ 750 (917)
Q Consensus 707 -----------~~-~~~h~~~V~~l~~spdg~~Lasgs~------------------------dG~I~iwDl~~~~~~~~ 750 (917)
.. ..+....-..+++.+...++..+.. ...+.-.|.++++....
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 00 0001111234678888777776642 23577889999988877
Q ss_pred ecCCCCC--------CeEEEEEe-cCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc-------------------
Q psy3053 751 LSDDINA--------SVNGVLFS-EDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK------------------- 799 (917)
Q Consensus 751 l~~~h~~--------~V~~v~fs-pdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~------------------- 799 (917)
++..+.+ ...-+.+. .+++ .++.++.++.+.+.|..+|+.+........
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~ 386 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREG 386 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTT
T ss_pred ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceeccc
Confidence 7633211 11112221 2333 466778899999999999987643211100
Q ss_pred --------------eE-------------EEEEeCC-CEEEEE---------------------------------eCCC
Q psy3053 800 --------------LL-------------CLSWAGE-EKVILG---------------------------------GALG 818 (917)
Q Consensus 800 --------------i~-------------~l~~s~~-~~lv~g---------------------------------s~dG 818 (917)
.. ..+++++ +.+.+. ...|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G 466 (582)
T d1flga_ 387 QRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVG 466 (582)
T ss_dssp CSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSE
T ss_pred cccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCCC
Confidence 00 1122222 112221 1136
Q ss_pred eEEEEECCCCEEEEEEecCCCceE-EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCC-EEEE
Q psy3053 819 MVYLVDLIQVQLLKQVRAHKDAVL-SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRK-RLIS 895 (917)
Q Consensus 819 ~I~vwdl~~~~~i~~l~~h~~~V~-sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~-~LaS 895 (917)
.+.-+|+.+++.+-+...+..... .++-.+..+++|+.||.++.+|.++|+.+.+++-..... .-+.+..+|+ +++.
T Consensus 467 ~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 788899999988877764432222 235678888999999999999999999998876422111 1145667886 4443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.21 E-value=0.016 Score=65.91 Aligned_cols=260 Identities=13% Similarity=0.041 Sum_probs=147.0
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeecccc----ceEEEEEeCCCCEEEEEec------ccEEEEEEeccCeeeEEecc
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSM----TLSSLCILPDNCTMLVGCW------DSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~----~V~sl~~spd~~~Lasgs~------Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
.+++.++.|+.|.-.|.++|+.+........ .+++--.. .+..+++|+. .|.|+-+|..+|+.+..+..
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 4688888999999999999998877643211 11111011 1334555543 48999999999999877542
Q ss_pred CC-------------------------------------Cc-eeEEEecCCCCEEEEEECC----------------CeE
Q psy3053 663 HE-------------------------------------DA-ISCVAWDEKRKRLISGSWD----------------CTV 688 (917)
Q Consensus 663 H~-------------------------------------~~-Vt~l~~spd~~~L~Sgs~D----------------gtI 688 (917)
.. .. -..+++.+....+..+..+ ..|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence 11 01 1233455555555554332 235
Q ss_pred EEEeCCCCCCCccCCcceee--eccCCCceEEEEE-eCCC---CEEEEEECCCeEEEEECCCCeeeEEecCCCC------
Q psy3053 689 RVWNTGASWSHMKPSKSLVS--QLDLDNRIKCLAI-SKDN---NQLAVGTEAGELIIWSLENHLMTQQLSDDIN------ 756 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~--~~~h~~~V~~l~~-spdg---~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~------ 756 (917)
.-.|..++............ -.........+.. ..+| +.++.++.+|.+.++|..+|+.+........
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~ 360 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred cccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccc
Confidence 55666665211100000000 0011122222222 2344 3677789999999999999987754321000
Q ss_pred ------C--------------------------CeEEEEEecCCCEEEEEeC----------------------------
Q psy3053 757 ------A--------------------------SVNGVLFSEDGCRVLSCGN---------------------------- 776 (917)
Q Consensus 757 ------~--------------------------~V~~v~fspdg~~L~s~s~---------------------------- 776 (917)
. .-...+++|+...+.....
T Consensus 361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (596)
T d1w6sa_ 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (596)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccccc
Confidence 0 0012456665555443321
Q ss_pred -----------CCeEEEEECCCCeEEEEeecCCceEE-EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec----CCCc
Q psy3053 777 -----------NCMLNVYDLTTGMQVCNKVFEEKLLC-LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA----HKDA 840 (917)
Q Consensus 777 -----------Dg~I~iwDl~tg~~i~~~~~~~~i~~-l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~----h~~~ 840 (917)
-|.|.-||+.+|+.+........... ......+.+++|+.||.++.+|..+|+.+-++.. +..+
T Consensus 441 ~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P 520 (596)
T d1w6sa_ 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP 520 (596)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC
Confidence 15688889999988876655443321 1112345888899999999999999999988853 2333
Q ss_pred eEEEeecCC-EEEEE
Q psy3053 841 VLSLHFDNC-TMLVG 854 (917)
Q Consensus 841 V~sis~dg~-~Lasg 854 (917)
++- ..+|+ +|++.
T Consensus 521 ~tY-~~dGkQYvav~ 534 (596)
T d1w6sa_ 521 MTY-THKGTQYVAIY 534 (596)
T ss_dssp EEE-EETTEEEEEEE
T ss_pred eEE-EECCEEEEEEE
Confidence 332 34665 45443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.16 E-value=0.15 Score=50.97 Aligned_cols=210 Identities=10% Similarity=-0.032 Sum_probs=132.7
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEe-cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEec
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVG-RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVE 652 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~ 652 (917)
.+..+...+.+++|.+..+.|+-+. .++.|...++..+.....+......+.++++..-+..|. +-...+.|.+.+++
T Consensus 30 ~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 3444556688999998887777664 467788888776554444433335678899987666555 44557799999988
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECC-CeEEEE--eCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-CTVRVW--NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI~vW--dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
.......+.........++++|...+++..... +..+|| ++... .........-....++++++.++.|.
T Consensus 110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-------~~~~i~~~~~~~P~glaiD~~~~~lY 182 (263)
T d1npea_ 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-------NRRILAQDNLGLPNGLTFDAFSSQLC 182 (263)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-------CCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-------CceeeeeecccccceEEEeecCcEEE
Confidence 655433344444678999999977777655433 233454 44332 11111122334668999998887775
Q ss_pred EE-ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q psy3053 730 VG-TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 730 sg-s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~ 794 (917)
.+ ...+.|...++........+. +.. ...++++. ++...++-...+.|...|..+++.+...
T Consensus 183 w~d~~~~~I~~~~~~g~~~~~v~~-~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 183 WVDAGTHRAECLNPAQPGRRKVLE-GLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEETTTTEEEEEETTEEEEEEEEE-CCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEECCCCCeEEEEC-CCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence 55 456789999987654433333 322 34577775 3434445456788999999888776544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.11 E-value=0.082 Score=59.31 Aligned_cols=262 Identities=14% Similarity=0.082 Sum_probs=149.2
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc----eEEEEEeCCCCEEEEEe------cccEEEEEEeccCeeeEEec
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT----LSSLCILPDNCTMLVGC------WDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~----V~sl~~spd~~~Lasgs------~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
+..++.+..|+.|...|..+|+.+......... ++..-..-++ .+++++ ..|.|.-+|..+|+.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence 346778888999988999999887765532211 1110011123 344433 24789999999999988764
Q ss_pred cC------------------------------CCce-eEEEecCCCCEEEEEEC-------------------CCeEEEE
Q psy3053 662 GH------------------------------EDAI-SCVAWDEKRKRLISGSW-------------------DCTVRVW 691 (917)
Q Consensus 662 ~H------------------------------~~~V-t~l~~spd~~~L~Sgs~-------------------DgtI~vW 691 (917)
.- ...+ ..+++.+....++.+.. ...|.-.
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence 21 0111 12445555555544321 1234444
Q ss_pred eCCCCCCCccCCc--ceeeeccCCCceEEEEEeCCC---CEEEEEECCCeEEEEECCCCeeeEEecCCCCC---------
Q psy3053 692 NTGASWSHMKPSK--SLVSQLDLDNRIKCLAISKDN---NQLAVGTEAGELIIWSLENHLMTQQLSDDINA--------- 757 (917)
Q Consensus 692 dl~~~~~~~~~~~--~~~~~~~h~~~V~~l~~spdg---~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~--------- 757 (917)
|.+++........ .-...........-+.+..++ ..++.++.+|.+.++|..+++.+.........
T Consensus 276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence 5555421100000 000001111222223333344 36777889999999999999887654321100
Q ss_pred --------------------------CeEEEEEecCCCEEEEEeC-----------------------------------
Q psy3053 758 --------------------------SVNGVLFSEDGCRVLSCGN----------------------------------- 776 (917)
Q Consensus 758 --------------------------~V~~v~fspdg~~L~s~s~----------------------------------- 776 (917)
.-...+++|+...++....
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence 0124567777666665432
Q ss_pred -CCeEEEEECCCCeEEEEeecCCceEE--EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC---CCceEEEeecCC-
Q psy3053 777 -NCMLNVYDLTTGMQVCNKVFEEKLLC--LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH---KDAVLSLHFDNC- 849 (917)
Q Consensus 777 -Dg~I~iwDl~tg~~i~~~~~~~~i~~--l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h---~~~V~sis~dg~- 849 (917)
.|.+.-+|+.+|+.+........... ++. ..+.+++|+.||.++.+|..+|+.+-++... .+...+...+|+
T Consensus 436 ~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cccceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 25688899999999988776654432 232 4458889999999999999999999888642 222223345664
Q ss_pred EEEEEe
Q psy3053 850 TMLVGC 855 (917)
Q Consensus 850 ~Lasgs 855 (917)
+|++.+
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.05 E-value=0.11 Score=58.21 Aligned_cols=273 Identities=11% Similarity=0.097 Sum_probs=155.6
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCC----------Cce-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHE----------DAI-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~----------~~V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
..+.+++.++.|.-+|.++|+.+..+.... ..+ ..+... ...++.++.|+.+.-.|..++......
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~- 154 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQ- 154 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecc-
Confidence 356677788999999999999988764211 011 122232 246677788888888887776311110
Q ss_pred cceeeeccCC-Cce--EEEEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCC-------------------
Q psy3053 704 KSLVSQLDLD-NRI--KCLAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDI------------------- 755 (917)
Q Consensus 704 ~~~~~~~~h~-~~V--~~l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h------------------- 755 (917)
....+. ..+ +..-.- -+..+++|+. .|.|..+|.++|+.+..+....
T Consensus 155 ----~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~ 229 (573)
T d1kb0a2 155 ----NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (573)
T ss_dssp ----ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred ----cCccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccccccc
Confidence 000000 000 000000 1334555432 4789999999999988764211
Q ss_pred -----------CCCe-EEEEEecCCCEEEEEeC-------------------CCeEEEEECCCCeEEEEeecC-------
Q psy3053 756 -----------NASV-NGVLFSEDGCRVLSCGN-------------------NCMLNVYDLTTGMQVCNKVFE------- 797 (917)
Q Consensus 756 -----------~~~V-~~v~fspdg~~L~s~s~-------------------Dg~I~iwDl~tg~~i~~~~~~------- 797 (917)
.+.+ ...++.++...+..+.. ...|...|.++|+.....+..
T Consensus 230 ~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~ 309 (573)
T d1kb0a2 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (573)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccc
Confidence 0111 23456666555554321 125677788888877654421
Q ss_pred ---CceE--EEEEeCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCC-------------------------------
Q psy3053 798 ---EKLL--CLSWAGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKD------------------------------- 839 (917)
Q Consensus 798 ---~~i~--~l~~s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~------------------------------- 839 (917)
.... .+..++. ..++.++.+|.++++|..+++.+........
T Consensus 310 d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~ 389 (573)
T d1kb0a2 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (573)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred cccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecc
Confidence 1122 2222322 2466788899999999999998765432110
Q ss_pred ------ceEEEeecCCEEEEEeCC-------------------------------------------CeEEEEECcCCeE
Q psy3053 840 ------AVLSLHFDNCTMLVGCWD-------------------------------------------SCVVIYDVECGRI 870 (917)
Q Consensus 840 ------~V~sis~dg~~Lasgs~D-------------------------------------------G~I~Iwdl~tg~~ 870 (917)
.-.+.+|+...++....+ |.+.-||+.+|+.
T Consensus 390 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~ 469 (573)
T d1kb0a2 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (573)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred cCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCce
Confidence 011233343444332111 4688889999998
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 871 VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 871 l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
+....... +..+=..+-.|..+++|+.||.++.+|.+ +..|..++
T Consensus 470 ~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 470 AWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 88775332 21111223367889999999999999998 55777765
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.04 E-value=0.072 Score=55.86 Aligned_cols=273 Identities=12% Similarity=0.004 Sum_probs=142.1
Q ss_pred EEEEEeCCCcEEEEEecCC-----------ceEEEeccCCceeeeee---ccccceEEEEEeCCCCEEEEEecc-cEEEE
Q psy3053 584 TAVAICGEGISVASVGRDA-----------MLKIHSLKTGRQERSAV---LSSMTLSSLCILPDNCTMLVGCWD-SCVVI 648 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg-----------~I~IWd~~t~~~~~~~~---~~~~~V~sl~~spd~~~Lasgs~D-g~I~I 648 (917)
...+...+|+.++.|+.+. .+.+||..+++-..... .+.......++.+++++++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 3444566888888877431 26789998876433211 122223456788999999998765 58999
Q ss_pred EEeccCeeeEEecc-CCCceeEEEecCCCCEEEEEECC------CeEEEEeCCCCCCCc-cCCc-ceeeeccC-----CC
Q psy3053 649 YDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGSWD------CTVRVWNTGASWSHM-KPSK-SLVSQLDL-----DN 714 (917)
Q Consensus 649 wdl~tg~~i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl~~~~~~~-~~~~-~~~~~~~h-----~~ 714 (917)
||..+..-...-.. ....-.+.+..+|++.++.|+.+ ..+.+||..+..-.. .... .......+ ..
T Consensus 103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 182 (387)
T d1k3ia3 103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 182 (387)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence 99988765432111 11222356667789999888753 368899987753100 0000 00000000 01
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC-----CCC--CCeEEEEEe-cCCCEEEEEeCCC--------
Q psy3053 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD-----DIN--ASVNGVLFS-EDGCRVLSCGNNC-------- 778 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~-----~h~--~~V~~v~fs-pdg~~L~s~s~Dg-------- 778 (917)
.-..+...++|+.++.+...+.+..++..+......-.. ... ..-.++.+. .+++.++.++...
T Consensus 183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~ 262 (387)
T d1k3ia3 183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 262 (387)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred ceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccc
Confidence 111233345777788887788888888877654322110 011 111233332 3566666665321
Q ss_pred eEEEEECC---CCeEEEEee----cCCceEEEEEeCCC-EEEEEeCC-----------CeEEEEECCCCEEEEEEecCC-
Q psy3053 779 MLNVYDLT---TGMQVCNKV----FEEKLLCLSWAGEE-KVILGGAL-----------GMVYLVDLIQVQLLKQVRAHK- 838 (917)
Q Consensus 779 ~I~iwDl~---tg~~i~~~~----~~~~i~~l~~s~~~-~lv~gs~d-----------G~I~vwdl~~~~~i~~l~~h~- 838 (917)
...+.++. ......... ....-.+....+++ .+++|+.+ ..+.+||..+.+-...-....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~ 342 (387)
T d1k3ia3 263 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 342 (387)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred eeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCc
Confidence 22333322 111111111 11112234444554 55666642 147889988775432211111
Q ss_pred ---CceEEEeecCCEEEEEeC
Q psy3053 839 ---DAVLSLHFDNCTMLVGCW 856 (917)
Q Consensus 839 ---~~V~sis~dg~~Lasgs~ 856 (917)
.....+.+||+.++.|+.
T Consensus 343 R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 343 RVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEEECCCCEEEEEeCC
Confidence 123344779999999884
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.98 E-value=0.34 Score=51.84 Aligned_cols=213 Identities=11% Similarity=0.086 Sum_probs=112.2
Q ss_pred cCCcceEEEEEeCCCcEEEEE-ecCC----ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc---------
Q psy3053 578 SHKEAITAVAICGEGISVASV-GRDA----MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--------- 643 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasg-s~Dg----~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--------- 643 (917)
++.-.+..+++||||++++.+ +.+| .++++|+.+|+.+... ........++|++|++.++-...+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccccccceEEcCCCCEEEEEEeccccCccccc
Confidence 444455677899999988743 3344 6899999999876422 122233578899999987754332
Q ss_pred -------cEEEEEEeccCee--eEEeccC--CCceeEEEecCCCCEEEEEEC---CCeEEEE--eCCCCCCCccCCccee
Q psy3053 644 -------SCVVIYDVECGRI--VTELAGH--EDAISCVAWDEKRKRLISGSW---DCTVRVW--NTGASWSHMKPSKSLV 707 (917)
Q Consensus 644 -------g~I~Iwdl~tg~~--i~~l~~H--~~~Vt~l~~spd~~~L~Sgs~---DgtI~vW--dl~~~~~~~~~~~~~~ 707 (917)
..|..+.+.++.. ...+... ...+..+..++++++++.... ++...+| |+..............
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 2577777766532 2233332 334667778889998764332 3344455 4433211111111111
Q ss_pred eec-cCCCceEEEEEeCCCCEEEEEE---CCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEE-eCCC--
Q psy3053 708 SQL-DLDNRIKCLAISKDNNQLAVGT---EAGELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSC-GNNC-- 778 (917)
Q Consensus 708 ~~~-~h~~~V~~l~~spdg~~Lasgs---~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg-- 778 (917)
... .......- .-+.++.+++... .++.|...++..... ...+...+...+..-.++..+.+|+.. ..++
T Consensus 281 ~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 281 KLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (430)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence 111 12222222 2222233333332 246677777765422 123332344445444444444555544 3443
Q ss_pred eEEEEECCCCeEEE
Q psy3053 779 MLNVYDLTTGMQVC 792 (917)
Q Consensus 779 ~I~iwDl~tg~~i~ 792 (917)
.|++++..++....
T Consensus 360 ~l~v~~~~~~~~~~ 373 (430)
T d1qfma1 360 TLQLHDLATGALLK 373 (430)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCcEEE
Confidence 47888887776543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.35 Score=48.18 Aligned_cols=225 Identities=8% Similarity=-0.052 Sum_probs=134.7
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEeccCe----eeEEeccCCCceeEEEecCCC
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVECGR----IVTELAGHEDAISCVAWDEKR 676 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~----~i~~l~~H~~~Vt~l~~spd~ 676 (917)
..|+-.++++......+ .....+.++++.+.++.|.... .++.|.-.+++... ....+......+.++++.+.+
T Consensus 10 ~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 34777777654433322 2334567888988777766654 46667666654321 122233333557788887755
Q ss_pred CEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE--CCCeEEEEECCCCeeeEEecC
Q psy3053 677 KRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT--EAGELIIWSLENHLMTQQLSD 753 (917)
Q Consensus 677 ~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs--~dG~I~iwDl~~~~~~~~l~~ 753 (917)
..|..+ ...+.|.+.++.... ..............++++|...++.... ..+.|.-.++..........
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~-------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~- 160 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT- 160 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-
T ss_pred ceEEEEecCCCEEEeEecCCce-------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-
Confidence 655554 456789999987541 1222233445688999999766665543 34567777776544433333
Q ss_pred CCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE
Q psy3053 754 DINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 754 ~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~ 829 (917)
..-....++++.+.++.|..+ ...+.|...++........... ......+++..+..+++-..++.|...+..++.
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCc
Confidence 334667899999987777666 4567888888865432222221 234667888866344444566788888877776
Q ss_pred EEEEEe
Q psy3053 830 LLKQVR 835 (917)
Q Consensus 830 ~i~~l~ 835 (917)
....+.
T Consensus 241 ~~~~~~ 246 (266)
T d1ijqa1 241 DVNLLA 246 (266)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 554444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.61 E-value=0.47 Score=53.01 Aligned_cols=280 Identities=13% Similarity=0.058 Sum_probs=154.9
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCC--------Cce-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcc
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHE--------DAI-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~--------~~V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~ 705 (917)
..|.+++.++.|.-.|.++|+.+..+.... ..+ ..++.. +..++.++.|+.+.-.|..++.........
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence 466677888999999999999887764210 111 123332 356778888998888888777321110000
Q ss_pred -eeeeccCCCceEEEEEeCCCCEEEEE-------ECCCeEEEEECCCCeeeEEecCCC----------------------
Q psy3053 706 -LVSQLDLDNRIKCLAISKDNNQLAVG-------TEAGELIIWSLENHLMTQQLSDDI---------------------- 755 (917)
Q Consensus 706 -~~~~~~h~~~V~~l~~spdg~~Lasg-------s~dG~I~iwDl~~~~~~~~l~~~h---------------------- 755 (917)
.............+.--..+..++.. +..+.|.-+|.++|+.+.++....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 00000000110011000012333332 234678889999998877654211
Q ss_pred -----------------CCC-eEEEEEecCCCEEEEEeC------------------------CCeEEEEECCCCeEEEE
Q psy3053 756 -----------------NAS-VNGVLFSEDGCRVLSCGN------------------------NCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 756 -----------------~~~-V~~v~fspdg~~L~s~s~------------------------Dg~I~iwDl~tg~~i~~ 793 (917)
.+. ...+++.+....+..+.. ...+.-.|..+|+....
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 011 223567776666665431 23577788999988766
Q ss_pred eecCC----------ceEE--EEEeCCC---EEEEEeCCCeEEEEECCCCEEEEEEecCCC-------------------
Q psy3053 794 KVFEE----------KLLC--LSWAGEE---KVILGGALGMVYLVDLIQVQLLKQVRAHKD------------------- 839 (917)
Q Consensus 794 ~~~~~----------~i~~--l~~s~~~---~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~------------------- 839 (917)
.+... .... +...+.. .++.++.+|.+++.|..+++.+........
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~ 386 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREG 386 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTT
T ss_pred ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceeccc
Confidence 55321 1112 2222221 356678889999999999887654321100
Q ss_pred -------------ceE---------------EEeecCCEEEEEe---------------------------------CCC
Q psy3053 840 -------------AVL---------------SLHFDNCTMLVGC---------------------------------WDS 858 (917)
Q Consensus 840 -------------~V~---------------sis~dg~~Lasgs---------------------------------~DG 858 (917)
... +.+++...+.... ..|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G 466 (582)
T d1flga_ 387 QRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVG 466 (582)
T ss_dssp CSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSE
T ss_pred cccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCCC
Confidence 001 1112222222211 126
Q ss_pred eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEeC
Q psy3053 859 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLTV 917 (917)
Q Consensus 859 ~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Ltv 917 (917)
.|.-+|+.+|+.+.....+. ++.+-..+..|..+++|+.||.++.+|.+ +..|..+++
T Consensus 467 ~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 467 SLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 78888889998887776432 22222234467788899999999999998 567877653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.53 E-value=0.21 Score=52.96 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=147.8
Q ss_pred EEEEecccEEEEEEeccCeeeEEeccC---------------------------------------CCce--eEEEecC-
Q psy3053 637 MLVGCWDSCVVIYDVECGRIVTELAGH---------------------------------------EDAI--SCVAWDE- 674 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg~~i~~l~~H---------------------------------------~~~V--t~l~~sp- 674 (917)
+.+|+..|.|+|+-+.+++.+..+.-. .+.. ..+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 567788999999999888776654310 0011 1344433
Q ss_pred --CCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC--CCCEEEEEECC---------------
Q psy3053 675 --KRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK--DNNQLAVGTEA--------------- 734 (917)
Q Consensus 675 --d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~Lasgs~d--------------- 734 (917)
||++|+... .++.|.+.|+.+... .. .........+..+...+ ...++++++..
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt-----~k-Ii~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~ 169 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKC-----DA-ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA 169 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-----EE-EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred ccceeEEEEEcCCCceEEEEECcceee-----eE-EEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence 678887766 678999999987621 01 11234445566666644 45677776653
Q ss_pred ---CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC---------------eE----------------
Q psy3053 735 ---GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC---------------ML---------------- 780 (917)
Q Consensus 735 ---G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---------------~I---------------- 780 (917)
+.+.++|..+.+...++. -.+....+.++++|+++++.+.+. .+
T Consensus 170 ~y~~~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 170 NYVNVFTAVDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp -EEEEEEEEETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hcceEEEEEecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 236788999998888776 345677899999999999877431 12
Q ss_pred -------EEEECCCC---eEEEEeecCCceEEEEEeCCCEEE--EEeCCCeEEEEECCCCE------------EEEEEec
Q psy3053 781 -------NVYDLTTG---MQVCNKVFEEKLLCLSWAGEEKVI--LGGALGMVYLVDLIQVQ------------LLKQVRA 836 (917)
Q Consensus 781 -------~iwDl~tg---~~i~~~~~~~~i~~l~~s~~~~lv--~gs~dG~I~vwdl~~~~------------~i~~l~~ 836 (917)
.+.|.+.. ..+..+..+.....+..+|+|..+ +|.-+.++.++|++... ...+...
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 33333221 112223333445567788887644 44557899999996421 1111111
Q ss_pred CCCceEEEeecCCE--EEEEeCCCeEEEEECcCC----------eEEEEecCCCCCEEEE------EEcCCCCEEEEEe
Q psy3053 837 HKDAVLSLHFDNCT--MLVGCWDSCVVIYDVECG----------RIVTELAGHEDAISCV------AWDEKRKRLISGN 897 (917)
Q Consensus 837 h~~~V~sis~dg~~--Lasgs~DG~I~Iwdl~tg----------~~l~~l~~h~~~V~sl------afSpdg~~LaSgs 897 (917)
.-++ ....+|++- ..+---|..|.-|++... ..+..+.-|-.+ -.+ ...|||++|++..
T Consensus 328 glgP-Lht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 328 GLGP-LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp CSCE-EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEETTTTSTTCCSSEEEEEE
T ss_pred CcCc-cccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCC-CCCccCcCCcCCCCCCEEEEec
Confidence 1122 222444443 333347999999998532 455555544321 112 2367999999875
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.34 E-value=0.64 Score=46.70 Aligned_cols=248 Identities=13% Similarity=0.149 Sum_probs=147.0
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEE
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLIS 681 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~S 681 (917)
..|.|-|+.++....+-.. ..-+.-.+|..+.||.-+ ..++.++|+++.+.++...- ...|.--.|-.+ +.|+-
T Consensus 45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~l 118 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVAL 118 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEE
T ss_pred ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEE
Confidence 4678888876553322111 223445789988888766 56899999999988887764 456777777643 56655
Q ss_pred EECCCeEEEEeCCCCCCCccCCcceee-eccCCCceEEEEEeCCCCEEEEEE---C----CCeEEEEECCCCeeeEEecC
Q psy3053 682 GSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIKCLAISKDNNQLAVGT---E----AGELIIWSLENHLMTQQLSD 753 (917)
Q Consensus 682 gs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs---~----dG~I~iwDl~~~~~~~~l~~ 753 (917)
.+ +..|.-|+++.... +.+.... ..-....|..-..++++++++..+ . .|.+.+|+.+.+. .+.+.
T Consensus 119 VT-~taVYHW~~~g~s~---P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ie- 192 (327)
T d1utca2 119 VT-DNAVYHWSMEGESQ---PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE- 192 (327)
T ss_dssp EC-SSEEEEEESSSSCC---CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC-
T ss_pred Ec-CCceEEEcccCCCC---chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccc-
Confidence 54 56899999965311 1111000 001245677788888888876542 2 3778899987653 33333
Q ss_pred CCCCCeEEEEEecCC---CEEEEE---eCCCeEEEEECCCCe--------EEEEeec-----CCceEEEEEeC-CCEEEE
Q psy3053 754 DINASVNGVLFSEDG---CRVLSC---GNNCMLNVYDLTTGM--------QVCNKVF-----EEKLLCLSWAG-EEKVIL 813 (917)
Q Consensus 754 ~h~~~V~~v~fspdg---~~L~s~---s~Dg~I~iwDl~tg~--------~i~~~~~-----~~~i~~l~~s~-~~~lv~ 813 (917)
+|.+.-..+.+..+. ..++.+ ...+.+++.++.+.. ....... ..-..++..++ .|.+..
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv 272 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 272 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence 443322222221110 122221 223678888885421 1111111 12245666664 567888
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEE
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVV 861 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~ 861 (917)
-+.-|.+++||+.++.++..-+-....|...++ +..-+++...+|.|.
T Consensus 273 iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 273 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 999999999999999998877766666654433 333455555666554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.33 E-value=0.65 Score=46.64 Aligned_cols=248 Identities=14% Similarity=0.109 Sum_probs=148.4
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
..+|.|.|+.++..+..-. -..-+.-.+|..+.||.-+ ..++.++|+++. ..........+|.--.|-
T Consensus 44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK--------~klks~~~~e~VvfWkWi 111 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWI 111 (327)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTT--------EEEEEEECSSCCCEEEES
T ss_pred CceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHh--------hhhceEEcCCCcEEEEec
Confidence 4578888987654322111 1122445678888887766 568999999876 333344455667666776
Q ss_pred CCCCEEEEEECCCeEEEEECCCCe-eeEEecC---CCCCCeEEEEEecCCCEEEEEe-------CCCeEEEEECCCCeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENHL-MTQQLSD---DINASVNGVLFSEDGCRVLSCG-------NNCMLNVYDLTTGMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~~-~~~~l~~---~h~~~V~~v~fspdg~~L~s~s-------~Dg~I~iwDl~tg~~i 791 (917)
.+. .|+..+ +..|+-|+++... +.+.+.. -.+..|-.-..++++++++..| -.|.+.+|..+.+...
T Consensus 112 s~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ 189 (327)
T d1utca2 112 SLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 189 (327)
T ss_dssp SSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE
T ss_pred CCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc
Confidence 544 454444 3479999996533 3333331 1235677788888999887654 2367889998776433
Q ss_pred EEeecCCceEEEEEeCCC---EEEE----EeCCCeEEEEECCCCE--------EEEEEe----cCCCceEEE--eecCCE
Q psy3053 792 CNKVFEEKLLCLSWAGEE---KVIL----GGALGMVYLVDLIQVQ--------LLKQVR----AHKDAVLSL--HFDNCT 850 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~---~lv~----gs~dG~I~vwdl~~~~--------~i~~l~----~h~~~V~si--s~dg~~ 850 (917)
....|.+....+...++. .+++ +...+++++.++.... ....+. ...+-..++ +..-..
T Consensus 190 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygi 269 (327)
T d1utca2 190 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 269 (327)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTE
T ss_pred cccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCE
Confidence 222211111111111110 1221 2233788888885421 111121 112333344 556677
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~I 904 (917)
+..-+.-|.|++||++++.++..-+-..++|-..+-+.+..-++....+|.|.-
T Consensus 270 iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 270 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 888999999999999999999887766777776666666556666667777654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=1 Score=44.63 Aligned_cols=229 Identities=7% Similarity=-0.084 Sum_probs=137.6
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
..|+-.++++......+. ....+.+++|++.++.|.-+. .++.|.--++...... .............+.++++.
T Consensus 10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~---~~~~~~~~~~~~~p~glAvD 85 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAVD 85 (266)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEEE
T ss_pred CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC---cceEEEEeCCCCCcceEEEe
Confidence 347778887665544444 445677999998877777654 4566776666442110 01111122233457789998
Q ss_pred CCCCEEEEE-ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeEEEEee-cCC
Q psy3053 723 KDNNQLAVG-TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGMQVCNKV-FEE 798 (917)
Q Consensus 723 pdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~~i~~~~-~~~ 798 (917)
+.++.|..+ ...+.|.+.++.......... ........++++|...++..+. ..+.|.-.++.......... .-.
T Consensus 86 ~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~ 164 (266)
T d1ijqa1 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 164 (266)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS
T ss_pred eccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc
Confidence 866656555 455789999998765544444 4456788999999666665543 33456666665443332222 224
Q ss_pred ceEEEEEeCC-CEEE-EEeCCCeEEEEECCCCEEEEEEe--cCCCceEEEeecCCEEEEEe-CCCeEEEEECcCCeEEEE
Q psy3053 799 KLLCLSWAGE-EKVI-LGGALGMVYLVDLIQVQLLKQVR--AHKDAVLSLHFDNCTMLVGC-WDSCVVIYDVECGRIVTE 873 (917)
Q Consensus 799 ~i~~l~~s~~-~~lv-~gs~dG~I~vwdl~~~~~i~~l~--~h~~~V~sis~dg~~Lasgs-~DG~I~Iwdl~tg~~l~~ 873 (917)
....+++++. +.+. +-...+.|...++.......... .......+++.++..|..+. .++.|...+..++.....
T Consensus 165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~ 244 (266)
T d1ijqa1 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL 244 (266)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEE
Confidence 5678888853 3444 44556889999986543322222 22345667777777766664 567888888877766555
Q ss_pred ecCC
Q psy3053 874 LAGH 877 (917)
Q Consensus 874 l~~h 877 (917)
+...
T Consensus 245 ~~~~ 248 (266)
T d1ijqa1 245 LAEN 248 (266)
T ss_dssp EECS
T ss_pred EEcC
Confidence 5443
|
| >d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: GRAM domain domain: Myotubularin-related protein 2, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.063 Score=47.37 Aligned_cols=95 Identities=21% Similarity=0.285 Sum_probs=66.0
Q ss_pred ccceEEEE-EEEEEeee-eEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccc----cCcceEEEEEEecCC
Q psy3053 155 YEKVILET-FGNKITPL-VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRF----LLQQVGIEIYFKDLE 228 (917)
Q Consensus 155 ~~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~----~~~~~~~e~~~~~~~ 228 (917)
.|.++.+. .+..+.|. ....|.|.+|+-+|+|.+...- +..++.+++..|..|.+.-- .-...+|+|.++|.
T Consensus 8 GE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~-~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDf- 85 (125)
T d1zsqa1 8 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI- 85 (125)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-SCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-
T ss_pred CcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCCC-ccEEEEeccceeeeeeecccccccCCccccEEEEeccC-
Confidence 34444331 22334443 4568999999999999875432 44567899999999876422 12345899999997
Q ss_pred CceeEEEecC-ChhhHHHHHHHHhCC
Q psy3053 229 PVKYLYLTLK-TQGARDTLYNALLDL 253 (917)
Q Consensus 229 ~~~~~~~~f~-~~~~~~~~~~~~~~~ 253 (917)
+.+=|.|. +..++.++++.|...
T Consensus 86 --r~~~f~f~~e~~~~~~v~~~L~~~ 109 (125)
T d1zsqa1 86 --RNLRFAHKPEGRTRRSIFENLMKY 109 (125)
T ss_dssp --EEEEEECCGGGCCHHHHHHHHHHH
T ss_pred --eEEEEEEcCCccHHHHHHHHHHHh
Confidence 88888995 446677899998754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.37 E-value=1.3 Score=45.76 Aligned_cols=200 Identities=14% Similarity=0.191 Sum_probs=120.2
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEe------CCCCEEEEEec--c--cEEEEEEecc-CeeeE
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCIL------PDNCTMLVGCW--D--SCVVIYDVEC-GRIVT 658 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~s------pd~~~Lasgs~--D--g~I~Iwdl~t-g~~i~ 658 (917)
|+..+++.+.+.+-|.+||++ |+.++.+.. +.+..+..- .....+++++. + .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 455678888888889999985 777766542 334443322 22223555553 2 3688888863 23333
Q ss_pred EeccC-------CCceeEEEe--cCC-CC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 659 ELAGH-------EDAISCVAW--DEK-RK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 659 ~l~~H-------~~~Vt~l~~--spd-~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
.+... ...+..+|+ ++. +. +++....+|.+..|.+....... ..............+..+.+..+...
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~-v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY-ISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS-EEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc-eeeEeeeccCCCCccceEEEeCCCCc
Confidence 33221 124667777 554 43 56667788999999774321111 11233344556778999999999999
Q ss_pred EEEEECCCeEEEEECCC-----CeeeEEecC-CCCCCeEEEEEec--C--CCEEEEEeCCCeEEEEECCCC-eEEEE
Q psy3053 728 LAVGTEAGELIIWSLEN-----HLMTQQLSD-DINASVNGVLFSE--D--GCRVLSCGNNCMLNVYDLTTG-MQVCN 793 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~-----~~~~~~l~~-~h~~~V~~v~fsp--d--g~~L~s~s~Dg~I~iwDl~tg-~~i~~ 793 (917)
|..+-++.-+..++... +..+..... .....+..++.-. + |-+|++.-.+++..+||..+. +.+..
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 99998887777666542 222322221 2456778887643 3 334445556788999998763 44443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.12 E-value=2.5 Score=44.57 Aligned_cols=237 Identities=15% Similarity=0.076 Sum_probs=129.4
Q ss_pred ceeEEEecCCCCEEEE-EECCC----eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC------
Q psy3053 666 AISCVAWDEKRKRLIS-GSWDC----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA------ 734 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~S-gs~Dg----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d------ 734 (917)
.+...+++|++++++. -+.+| ++++.|+.++. .+.... .......++|.++++.|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~-------~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcce-------eccccc-ccccccceEEcCCCCEEEEEEeccccCcc
Confidence 3445677999998874 33333 79999998872 111111 11122568899999988765432
Q ss_pred ----------CeEEEEECCCCeee--EEecC-CCCCCeEEEEEecCCCEEEEEeC---CCe--EEEEECCCCe-------
Q psy3053 735 ----------GELIIWSLENHLMT--QQLSD-DINASVNGVLFSEDGCRVLSCGN---NCM--LNVYDLTTGM------- 789 (917)
Q Consensus 735 ----------G~I~iwDl~~~~~~--~~l~~-~h~~~V~~v~fspdg~~L~s~s~---Dg~--I~iwDl~tg~------- 789 (917)
..|..+.+.+.... ..+.. .....+..+..++++++++.... ++. +.+.|+....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 277 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence 25777877765322 22221 12335667788999998775432 223 4444543221
Q ss_pred -EEEEee-cCCceEEEEEeCCCEEEEEe---CCCeEEEEECCCCEE---EEEEecCCCceE--EEeecCCEEEEE-eCCC
Q psy3053 790 -QVCNKV-FEEKLLCLSWAGEEKVILGG---ALGMVYLVDLIQVQL---LKQVRAHKDAVL--SLHFDNCTMLVG-CWDS 858 (917)
Q Consensus 790 -~i~~~~-~~~~i~~l~~s~~~~lv~gs---~dG~I~vwdl~~~~~---i~~l~~h~~~V~--sis~dg~~Lasg-s~DG 858 (917)
...... ......-+...++..++... .++.|...++.+... ...+..+...+. .++..+.+|+.. ..++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~ 357 (430)
T d1qfma1 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (430)
T ss_dssp CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred ceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence 111111 12223333334442333332 236777777765421 222333444343 335566666554 4554
Q ss_pred --eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEecCcc
Q psy3053 859 --CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN----LVGAPKLYATEFY 910 (917)
Q Consensus 859 --~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs----~DG~V~IWdl~~~ 910 (917)
.|++++..++..........+.|..+...++...+...- .-.++.-+|+.+.
T Consensus 358 ~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 588899998887666555556677666666665444322 3367888888754
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.98 E-value=3.9 Score=41.75 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=41.9
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCe---EEEEeecCCceEEEEEeC-CCEEEEEeC
Q psy3053 756 NASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGM---QVCNKVFEEKLLCLSWAG-EEKVILGGA 816 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~---~i~~~~~~~~i~~l~~s~-~~~lv~gs~ 816 (917)
-...+.++++||++.|+++. ..+.|+.|++.... ........+..-.+.+++ ++.+.+++.
T Consensus 205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 35688999999998776664 56789999886443 233345666677788874 556666543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=1.5 Score=45.83 Aligned_cols=183 Identities=9% Similarity=-0.012 Sum_probs=102.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccC---------CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKT---------GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t---------~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...-+++++...++++|+.++ +.|-.+.+ ..........-..|..++++.| .+++. .++.+..++..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~ 113 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE 113 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence 455688888878888888775 55665421 1111111112235788888755 44444 45667777776
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.-........-..++..+.+.| ..++....+|.+-++++..+.... ...-.......+.+.|++|++.|..++++.
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~--~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 114 ELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp STTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred ccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCcccc--ccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 5444333333456788888877 567777889999999987762110 000011122346678888888887777764
Q ss_pred CCCeEEE-EECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 733 EAGELII-WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 733 ~dG~I~i-wDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
.++ ..+ -++.....+... ......|.+|.|-.+..++++-
T Consensus 190 g~~-~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 NGE-MEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp TTE-EEEEEEECCCHHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred CCc-eeeccCCCCccccCCC-cCCCcceeEEEEecCceEEEEE
Confidence 332 111 111111100000 0134568889998776666554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.83 E-value=11 Score=39.58 Aligned_cols=112 Identities=11% Similarity=0.138 Sum_probs=61.2
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-cCCcceeeeccCCCceEEEEEeCC---CCEEEEE-EC------
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM-KPSKSLVSQLDLDNRIKCLAISKD---NNQLAVG-TE------ 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasg-s~------ 733 (917)
+.-++|+|.|+++.+++--.+|.|++++..++.... ..................++++|+ ..++... +.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 467899999999888876457999999876652111 000011111223456788999985 2333332 10
Q ss_pred C----Ce--EEEEECCCC--e------eeEEecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 734 A----GE--LIIWSLENH--L------MTQQLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 734 d----G~--I~iwDl~~~--~------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
+ .. +..+..... . .+.............++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 0 11 222222221 1 111222222345678999999988777664
|
| >d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: TFIIH domain domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.62 Score=39.29 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=53.8
Q ss_pred EeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhH----HHHH
Q psy3053 172 VNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGAR----DTLY 247 (917)
Q Consensus 172 ~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~----~~~~ 247 (917)
..+|.|.|+.++|.|.|..+ ..+.+.+++.+|+...---=.--...|-|+.+++ .++.|.|.+...+ |.|=
T Consensus 19 K~~GtL~l~~d~l~W~p~~~--~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~---~s~~F~Ftn~~~~~~~Rd~iK 93 (108)
T d2rnrb1 19 KQDGALYLMAERIAWAPEGK--DRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG---DTTNFHFSNESTAVKERDAVK 93 (108)
T ss_dssp SCEEEEEECSSEEEEEESSC--SSCSEEEETTTEEEEEECCTTCSSEEEEEEETTS---CEEEEEECCTTTHHHHHHHHH
T ss_pred cCCcEEEEEcCeEEEEcCCC--CCceEEEEhhhhhceecCCCCcccceeEEEEeCC---CeEEEEECChHHHHHHHHHHH
Confidence 46899999999999999553 3445789999998754333333446799999887 6888999986544 6554
Q ss_pred HHH
Q psy3053 248 NAL 250 (917)
Q Consensus 248 ~~~ 250 (917)
+.|
T Consensus 94 ~~L 96 (108)
T d2rnrb1 94 DLL 96 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.18 E-value=4.5 Score=41.95 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=93.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECC----------CC-eEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLT----------TG-MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~----------tg-~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
....-+++++...++++|+.++ +.|..+. .+ ....... -..+..++++.+ .+++ ..++.+..++.
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-ip~v~~vafs~d-~l~v-~~~~~l~~~~~ 112 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHGD-QVLV-STRNALYSLDL 112 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEETT-EEEE-EESSEEEEEES
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-CCCeEEEEeeCC-EEEE-EeCCCEEEEEe
Confidence 4566788888777888888775 5565521 11 1111111 135788899877 4444 35567888887
Q ss_pred CCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecC-----CCCCEEEEEEcCCCCEEEEEeC
Q psy3053 826 IQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG-----HEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 826 ~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-----h~~~V~slafSpdg~~LaSgs~ 898 (917)
...........-..++.++.+....++....+|.+.++++..++......+ -.+.+.+++|++.|..++++..
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g 190 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN 190 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred eccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence 765544554455677888888888889999999999999988864332211 1366889999999988888753
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=6 Score=38.19 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=31.5
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEE
Q psy3053 724 DNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQV 791 (917)
Q Consensus 724 dg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i 791 (917)
++..++.|+.+ ..+..||..+.+....-.........+++. .++..++.++.+ .....+|..+.+..
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 224 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWT 224 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeee
Confidence 34555555543 347788887765443222111111122222 244455555433 24566666665443
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=90.12 E-value=8.8 Score=37.22 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=103.4
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..|..|+.... ..+... ||.|..|-....-++..-......+..++.- +...++ -.||.+..|.....-....-
T Consensus 26 ~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G-~~~~~a--l~dg~v~~wG~~~~gq~~~~ 99 (273)
T d1jtdb_ 26 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG-NYHSLA--LKDGEVIAWGGNEDGQTTVP 99 (273)
T ss_dssp SSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC-SSEEEE--EETTEEEEEECCTTSTTCCC
T ss_pred CCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC-CCceee--eeeeeeeccCCCcceeeccc
Confidence 45777665322 223334 8988888766544333222333445554421 222222 24899999976432111111
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
......+..++.... ..+.. .|+.+..|.......... .......|..++- +...+....+|.++.|
T Consensus 100 ~~~~~~~~~i~~~~~--~~~~~-~dg~v~~~g~~~~~~~~~-------~~~~~~~v~~~~~---~~~~~~~~~~g~~~~~ 166 (273)
T d1jtdb_ 100 AEARSGVDAIAAGAW--ASYAL-KDGKVIAWGDDSDGQTTV-------PAEAQSGVTALDG---GVYTALAVKNGGVIAW 166 (273)
T ss_dssp GGGGSSCCEEEEETT--EEEEE-ETTEEEEEECCTTSTTSC-------CGGGGSSEEEEEE---CSSEEEEEETTEEEEE
T ss_pred cccccceeEEeeecc--ccccc-ccccceecccCCCCceee-------eccCCceEEEEec---cceeeeeecccceeEe
Confidence 112233455554432 22222 489999997544311111 1111233444432 2222333457888888
Q ss_pred ECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCceEEEEEeCCCEEEEEeCCCe
Q psy3053 741 SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEKLLCLSWAGEEKVILGGALGM 819 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~ 819 (917)
-........... .....|..|+.... +.+.-. ||.|+.|=... ++.-........+..++......++. .+|.
T Consensus 167 G~~~~g~~~~~~-~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~~~~l--~~g~ 240 (273)
T d1jtdb_ 167 GDNYFGQTTVPA-EAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--KNGK 240 (273)
T ss_dssp ECCTTSTTSCCG-GGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--ETTE
T ss_pred ecccCCcccccc-cccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcceEEEE--ECCE
Confidence 665432211111 23456777765433 333223 78898885422 22111112223455555444433333 3788
Q ss_pred EEEEEC
Q psy3053 820 VYLVDL 825 (917)
Q Consensus 820 I~vwdl 825 (917)
|+.|-.
T Consensus 241 v~~WG~ 246 (273)
T d1jtdb_ 241 VIAWGS 246 (273)
T ss_dssp EEEEST
T ss_pred EEEECC
Confidence 888843
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=11 Score=36.06 Aligned_cols=146 Identities=14% Similarity=0.000 Sum_probs=75.1
Q ss_pred CCCEEEEEECCCe-----EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEE
Q psy3053 724 DNNQLAVGTEAGE-----LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCN 793 (917)
Q Consensus 724 dg~~Lasgs~dG~-----I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~ 793 (917)
+++.++.|+.++. ...+|..+..............-.++.. .++..++.++.+ ..+..||..+++....
T Consensus 101 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~ 179 (288)
T d1zgka1 101 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 179 (288)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred ceeeEEecceecccccceeeeeccccCccccccccccccccceeee-eeecceEecCcccccccceEEEeeccccccccc
Confidence 5666666544333 4456766654433222111111112222 244455555443 3578888887765433
Q ss_pred eecC--CceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEEEe--cCCCceEEEeecCCEEEEEeCCC-----e
Q psy3053 794 KVFE--EKLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQVR--AHKDAVLSLHFDNCTMLVGCWDS-----C 859 (917)
Q Consensus 794 ~~~~--~~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~l~--~h~~~V~sis~dg~~Lasgs~DG-----~ 859 (917)
.... ....+.....+..++.|+.+ .....+|..+.+....-. .......++..++++++.|+.++ .
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 259 (288)
T d1zgka1 180 TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDS 259 (288)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCE
T ss_pred cccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecce
Confidence 2222 12234444555455665544 356778887766443221 11122344456888888887654 4
Q ss_pred EEEEECcCCeE
Q psy3053 860 VVIYDVECGRI 870 (917)
Q Consensus 860 I~Iwdl~tg~~ 870 (917)
|.+||+.+.+.
T Consensus 260 v~~yd~~~~~W 270 (288)
T d1zgka1 260 VECYDPDTDTW 270 (288)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCEE
Confidence 78899887653
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=88.16 E-value=4 Score=39.88 Aligned_cols=221 Identities=12% Similarity=0.009 Sum_probs=106.2
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
...|..++... ...+... ||.|..|-.......-. .......+..++.- ..+.+. -.||.+..|...
T Consensus 25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~-------~~~~~~~v~~v~~G--~~~~~a-l~dg~v~~wG~~ 91 (273)
T d1jtdb_ 25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTM-------PAATQSGVDAIAAG--NYHSLA-LKDGEVIAWGGN 91 (273)
T ss_dssp SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSC-------CGGGGSCCCEEEEC--SSEEEE-EETTEEEEEECC
T ss_pred CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceee-------eecccccceEEecC--CCceee-eeeeeeeccCCC
Confidence 45677777643 3333345 89999997655421111 11122334444432 222222 248899999764
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE-EEeecCCceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV-CNKVFEEKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i-~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
..-...... .....+..++.... ..+. -.|+.+..|.-...... ........+..++-.. ...+...+|.++.
T Consensus 92 ~~gq~~~~~-~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~g~~~~ 165 (273)
T d1jtdb_ 92 EDGQTTVPA-EARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVKNGGVIA 165 (273)
T ss_dssp TTSTTCCCG-GGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEETTEEEE
T ss_pred cceeecccc-ccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEeccc--eeeeeecccceeE
Confidence 322111111 11233444444332 2222 24788888864332111 1111122344433322 3333445788888
Q ss_pred EECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy3053 823 VDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAP 902 (917)
Q Consensus 823 wdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V 902 (917)
|-................|..|+......+.-. ||.|+-|=......+..-......|..|+-... ..++. .||.|
T Consensus 166 ~G~~~~g~~~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~~l--~~g~v 241 (273)
T d1jtdb_ 166 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL--KNGKV 241 (273)
T ss_dssp EECCTTSTTSCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE--ETTEE
T ss_pred eecccCCcccccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEEEE--ECCEE
Confidence 865433221111223456778877555544433 899999954321111111112345667765433 33443 38999
Q ss_pred EEEec
Q psy3053 903 KLYAT 907 (917)
Q Consensus 903 ~IWdl 907 (917)
..|--
T Consensus 242 ~~WG~ 246 (273)
T d1jtdb_ 242 IAWGS 246 (273)
T ss_dssp EEEST
T ss_pred EEECC
Confidence 99954
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=87.23 E-value=17 Score=36.83 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=109.5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec----C--CCEEEEEeC--C--CeEEEEECCC-CeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE----D--GCRVLSCGN--N--CMLNVYDLTT-GMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp----d--g~~L~s~s~--D--g~I~iwDl~t-g~~i 791 (917)
|+..+++.....+-|++||+. |+.+..+. .+.++.|..-. + +.-+++++. + .+|.+|.+.. ...+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 345677777777789999995 77777665 35566555432 2 223444442 2 3577777642 2223
Q ss_pred EEeec--------CCceEEEEE--eCC-C--EEEEEeCCCeEEEEECC---CC----EEEEEEecCCCceEEE-eecCCE
Q psy3053 792 CNKVF--------EEKLLCLSW--AGE-E--KVILGGALGMVYLVDLI---QV----QLLKQVRAHKDAVLSL-HFDNCT 850 (917)
Q Consensus 792 ~~~~~--------~~~i~~l~~--s~~-~--~lv~gs~dG~I~vwdl~---~~----~~i~~l~~h~~~V~si-s~dg~~ 850 (917)
..... ...+..+|. ++. + .+++...+|.+..|.+. ++ +.++.+......=-|+ ....+.
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence 22221 122444444 442 3 46677888999888762 33 3455555433333333 445678
Q ss_pred EEEEeCCCeEEEEECc-----CCeEEEEecC--CCCCEEEEEEcC----CCCEEEEEeCCCcEEEEecCc--ceEEEEe
Q psy3053 851 MLVGCWDSCVVIYDVE-----CGRIVTELAG--HEDAISCVAWDE----KRKRLISGNLVGAPKLYATEF--YLLYVLT 916 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~-----tg~~l~~l~~--h~~~V~slafSp----dg~~LaSgs~DG~V~IWdl~~--~ll~~Lt 916 (917)
|..+-++..|..++.+ .+..+....+ ..+.+..++.-. +|-+|+|.-.+++..||+.++ ..+..|+
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 8999888777666653 2334433332 356677777532 334455555788999999875 4566654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.47 E-value=15 Score=34.41 Aligned_cols=217 Identities=14% Similarity=0.095 Sum_probs=109.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
+.+.++++...|.+.++-+..+....-..............+--+-|-.| +.-|-.-..|++.++...-...++...
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RD---V~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRD---VSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEE---CSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEee---hhcCcceeeEEEEccCCCCeeeEecCC
Confidence 44578888889999988776652111111111111111111111111110 000112234556666533334444423
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC----------CceEEEEEe-CC-CEEEEEeC-CCeEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE----------EKLLCLSWA-GE-EKVILGGA-LGMVY 821 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~----------~~i~~l~~s-~~-~~lv~gs~-dG~I~ 821 (917)
..-.|.+++.. +.+...+|+......+|-++.|+.......+ .-|..+.+- ++ ..++++.- +|.++
T Consensus 102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence 33455555553 3346667777777888888888665433322 123333332 21 12444544 77888
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC----CCeEEEEECcCCeEEEE-ecC------CCCCEEEEEEcCCC
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW----DSCVVIYDVECGRIVTE-LAG------HEDAISCVAWDEKR 890 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~----DG~I~Iwdl~tg~~l~~-l~~------h~~~V~slafSpdg 890 (917)
+++...|............| +++-+ .--| -+|.++++.-.. +.. ..-.|+-+-+.|++
T Consensus 181 i~tpkeGS~~~ay~~~gnKV----------~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd 249 (313)
T d2hu7a1 181 VFDSGEGSFSSASISPGMKV----------TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG 249 (313)
T ss_dssp EECCSSEEEEEEEECTTSCE----------EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTS
T ss_pred EecCCCCcccceeEccCcee----------eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCC
Confidence 88776665544333322333 22221 1123 336666654332 221 12357777899999
Q ss_pred CEEEEEeCCCcEEEEe
Q psy3053 891 KRLISGNLVGAPKLYA 906 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWd 906 (917)
+.++.+-.||.-+++.
T Consensus 250 ~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 250 RLAVVARREGRSAVFI 265 (313)
T ss_dssp CEEEEEEETTEEEEEE
T ss_pred cEEEEEecCCchheee
Confidence 9999999999888875
|