Psyllid ID: psy3170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MVNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTALAYRADQLKAERARVEKDSFLTSW
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEcEEEcccccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccEEEccccccccccccEEEEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEccccccccccccEEEEEEEEEcccEEEEcccccccccccccEEEEcEEEcccccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccEEcccccccccccEEEEEcccccccccccccccEEEEEEEEcHHHHcccccccccccEEEEccccccccccccccccEEEEEccccEEEEEEEEEEccccccccccEEEEcccccHHHHHccccccccccccccccccccccHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHccccccccEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccEEEEEEcccccccccEccccccccccccccEEEEEEccccccccccccHHHHHccccEcccHHHcccccccccccEEEEccccccccccccccccEEEEccccEEEEEEccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEEcHHHccccEEccccccccccccEEEEEEccccccccccccccEEEEEEEEEccEEEEcHHHccccccccEEEEEEcccccccccccEEEEEEEEEEccccccccccccccEEEEEEcccccccccEccccccccccccccEEEEEEcccccccccccccHHEEEEEEEccHHHHHHHcccccccEEEEcccccccEccccccccEEEEEccccccEEEEEEEEcccccccccccEEEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvnnhaahcitsplgkpryvRFGLITKLSYSVTDNIHRVMQNilhpnyttegtsqyhdiallkiappvefsetlkpaclnrahnvksptaiasgfgklnyfectqyskiqdespialapalvggVRYVKTQcdilampmiiggsrakygefphqctqyskiqdespialapalvggVRYVRTQcdilampmiiggsrakygefphqaevgfveeggtmkdvkwfcggslispnyvmtaahcitsplvgtmvkaPLRTLLFISMAEvgfleeggtmkdvkwfcggslispnyvmTAAHcitsplgkpryvRFGLITKLSYSVTDNIHRVMQNilhpnyttegtsqyhdiallkiappvefsetlkpaclnrahnvksptaiasgfgklnyfdtKESLRLMKVVLDIINndtcskqeTTLISSQLCATVmaggkdtcqgdsggplqtimpdlcmyniigitsygrqcghantpaiyTRVSYYVPWivhtvwpdqfpnsslTTALAYRADQLKAERARVEkdsfltsw
Flexible Loop (DISEMBL)
mvnnhaahcitsplgkpryVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVksptaiasgfgkLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTALAYRADQLKAErarvekdsfltsw
Low Complexity Region (SEG)
MVNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTALAYRADQLKAERARVEKDSFLTSW
Disordered region (IsUnstruct)
******AHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTALAYRA*******************
Disordered Region (DISOPRED)
MVNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP***********************************
Disordered Region (DISEMBL)
********CITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTALAYRADQLKAE*************
Disordered Region (DISPRO)
MVNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTALAYRADQLKAERARVEKDSFLTSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
P05049	435	Serine protease snake OS=	yes	N/A	0.478	0.577	0.383	6e-45
Q9ESD1	342	Prostasin OS=Mus musculus	yes	N/A	0.403	0.619	0.345	2e-28
Q9ES87	342	Prostasin OS=Rattus norve	yes	N/A	0.403	0.619	0.349	2e-28
P81286	343	Plasminogen (Fragment) OS	N/A	N/A	0.373	0.571	0.378	3e-28
Q2KJ63	636	Plasma kallikrein OS=Bos	no	N/A	0.380	0.314	0.339	1e-26
Q86T26	416	Transmembrane protease se	yes	N/A	0.369	0.466	0.349	2e-26
Q9JIQ8	490	Transmembrane protease se	no	N/A	0.377	0.404	0.344	2e-26
Q01177	812	Plasminogen OS=Rattus nor	no	N/A	0.363	0.235	0.360	2e-26
Q7M4I3	243	Venom protease OS=Megabom	N/A	N/A	0.398	0.860	0.331	4e-26
Q9BYE2	581	Transmembrane protease se	no	N/A	0.392	0.354	0.325	4e-26

>sp|P05049|SNAK_DROME Serine protease snake OS=Drosophila melanogaster GN=snk PE=1 SV=2

 Score =  182 bits (462), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 154/266 (57%), Gaps = 15/266 (5%)

Query: 229 LISPNYVMTAAHCITS-PLVGTMVKAPLRTLLFISMAEVGFLEEGGTM-KDVKWFCGGSL 286
           L       +   C+ S PL+  +   P R  LF  MA +G+ +  G+  +D+KW CGG+L
Sbjct: 167 LTDTGRTFSGKQCVPSVPLI--VGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGAL 224

Query: 287 ISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYH 346
           +S  YV+TAAHC TS    P  VR G       S T    +++  +LHP Y +  ++ YH
Sbjct: 225 VSELYVLTAAHCATSGSKPPDMVRLGARQLNETSATQQDIKILIIVLHPKYRS--SAYYH 282

Query: 347 DIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDII 406
           DIALLK+   V+FSE ++PACL +   ++ PT +A+G+G+  +   K +  L +V LD++
Sbjct: 283 DIALLKLTRRVKFSEQVRPACLWQLPELQIPTVVAAGWGRTEFLGAKSNA-LRQVDLDVV 341

Query: 407 NNDTCS---KQETTL----ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL-CMYNIIGI 458
              TC    ++E  L    I  Q CA  + GG+DTCQGDSGGP+  ++P+  C+  ++GI
Sbjct: 342 PQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPEYNCVAFVVGI 401

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
           TS+G+ C   N P +YTR+  Y+ WI
Sbjct: 402 TSFGKFCAAPNAPGVYTRLYSYLDWI 427

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q9ESD1|PRSS8_MOUSE Prostasin OS=Mus musculus GN=Prss8 PE=2 SV=2

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 123/243 (50%), Gaps = 31/243 (12%)

Query: 272 GGTMKDVKW------------FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLS 318
           GG+ K  +W             CGGSL+S  +V++AAHC      +  Y V+ G     S
Sbjct: 48  GGSAKPGQWPWQVSITYDGNHVCGGSLVSNKWVVSAAHCFPREHSREAYEVKLGAHQLDS 107

Query: 319 YSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPT 378
           YS    +H V Q I H +Y  EG+    DIA ++++ PV FS  ++P CL  A N   P 
Sbjct: 108 YSNDTVVHTVAQIITHSSYREEGSQG--DIAFIRLSSPVTFSRYIRPICLPAA-NASFPN 164

Query: 379 AI---ASGFGKLNYFDTKESLR-LMKVVLDIINNDTCS---------KQETTLISSQLCA 425
            +    +G+G +    + ++ R L ++ + +I+ +TCS         ++  T+    LCA
Sbjct: 165 GLHCTVTGWGHVAPSVSLQTPRPLQQLEVPLISRETCSCLYNINAVPEEPHTIQQDMLCA 224

Query: 426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
             + GGKD CQGDSGGPL   M  +  + + GI S+G  CG  N P +YT  S Y  WI 
Sbjct: 225 GYVKGGKDACQGDSGGPLSCPMEGI--WYLAGIVSWGDACGAPNRPGVYTLTSTYASWIH 282

Query: 486 HTV 488
           H V
Sbjct: 283 HHV 285

Possesses a trypsin-like cleavage specificity (By similarity). Activates amiloride-sensitive sodium channels.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9ES87|PRSS8_RAT Prostasin OS=Rattus norvegicus GN=Prss8 PE=2 SV=3

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 31/243 (12%)

Query: 272 GGTMKDVKW------------FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLS 318
           GG+ K  +W             CGGSL+S  +V++AAHC      K  Y V+ G     S
Sbjct: 48  GGSAKPGQWPWQVSITYNGVHVCGGSLVSNQWVVSAAHCFPREHSKEEYEVKLGAHQLDS 107

Query: 319 YSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPT 378
           +S    +H V Q I H +Y  EG+    DIAL++++ PV FS  ++P CL  A N   P 
Sbjct: 108 FSNDIVVHTVAQIISHSSYREEGSQG--DIALIRLSSPVTFSRYIRPICLPAA-NASFPN 164

Query: 379 AI---ASGFGKLNYFDTKESLR-LMKVVLDIINNDTCS---------KQETTLISSQLCA 425
            +    +G+G +    + ++ R L ++ + +I+ +TCS         ++  T+    LCA
Sbjct: 165 GLHCTVTGWGHVAPSVSLQTPRPLQQLEVPLISRETCSCLYNINAVPEEPHTIQQDMLCA 224

Query: 426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
             + GGKD CQGDSGGPL    P   ++ + GI S+G  CG  N P +YT  S Y  WI 
Sbjct: 225 GYVKGGKDACQGDSGGPLSC--PIDGLWYLAGIVSWGDACGAPNRPGVYTLTSTYASWIH 282

Query: 486 HTV 488
           H V
Sbjct: 283 HHV 285

Possesses a trypsin-like cleavage specificity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P81286|PLMN_SHEEP Plasminogen (Fragment) OS=Ovis aries GN=PLG PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 116/214 (54%), Gaps = 18/214 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FCGG+LISP +V+TAAHC+ S LG   Y V  G   +++   +     V +  L P+   
Sbjct: 139 FCGGTLISPEWVLTAAHCLDSILGPSFYTVILGAHYEMAREASVQEIPVSRLFLEPSRA- 197

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA--SGFGKLNYFDTKESLR 397
                  DIALLK++ P   ++ + PACL   + V +   +   +G+G+     T    R
Sbjct: 198 -------DIALLKLSSPAVITDEVIPACLPSPNYVVADKTVCYITGWGETQ--GTFGVGR 248

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y 
Sbjct: 249 LKEARLPVIENKVCNRYEYLNGRVKSTELCAGDLAGGTDSCQGDSGGPLVCFEKD--KYI 306

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + G+TS+G  C   N P +Y RVS YVPWI  T+
Sbjct: 307 LQGVTSWGLGCARPNKPGVYVRVSTYVPWIEETM 340

Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated by CSPG4. Binds to cells.

Ovis aries (taxid: 9940)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|Q2KJ63|KLKB1_BOVIN Plasma kallikrein OS=Bos taurus GN=KLKB1 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 12/212 (5%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYT- 338
            CGGS+I   +V+TAAHC    L    +  +G I  LS   T+ +  ++ + I+HPNY  
Sbjct: 419 LCGGSIIGRQWVLTAAHCFDGLLLSNIWRIYGGILNLSEITTETSFSQIKEIIVHPNYKI 478

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR- 397
           +EG+   HDIAL+K+  P+ F++  K  CL    + K P           + + K  ++ 
Sbjct: 479 SEGS---HDIALIKLEAPLNFTDLQKAICLPSKDDTK-PVYTDCWITGWGFTEEKGKIQN 534

Query: 398 -LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + +I+N+ C K  ++  +    +CA    GGKD C+GDSGGPL     +   ++
Sbjct: 535 TLQKANIPLISNEECQKSYRDYKITKQMICAGYKEGGKDACKGDSGGPLVCQHEE--TWH 592

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVH 486
           ++GITS+G  C     P +YT+V+ YV WI+ 
Sbjct: 593 LVGITSWGEGCARREQPGVYTKVAEYVDWILE 624

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q86T26|TM11B_HUMAN Transmembrane protease serine 11B OS=Homo sapiens GN=TMPRSS11B PE=2 SV=3

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 18/212 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNIL-HPNYT 338
           +CG SLIS  ++++AAHC         + V FG++    Y     + R +QNI+ H NY+
Sbjct: 209 YCGASLISSRWLLSAAHCFAKKNNSKDWTVNFGIVVNKPY-----MTRKVQNIIFHENYS 263

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESL 396
           + G   + DIAL+++A  V F+E ++  CL  A     ++   + +G+G L Y +    +
Sbjct: 264 SPGL--HDDIALVQLAEEVSFTEYIRKICLPEAKMKLSENDNVVVTGWGTL-YMNGSFPV 320

Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPD-LCM 452
            L +  L II+N  C+        +  + LCA  M+G  D CQ DSGGPL    PD   +
Sbjct: 321 ILQEDFLKIIDNKICNASYAYSGFVTDTMLCAGFMSGEADACQNDSGGPLA--YPDSRNI 378

Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           ++++GI S+G  CG  N P +YTRV+ Y  WI
Sbjct: 379 WHLVGIVSWGDGCGKKNKPGVYTRVTSYRNWI 410

Probable serine protease.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9JIQ8|TMPS2_MOUSE Transmembrane protease serine 2 OS=Mus musculus GN=Tmprss2 PE=2 SV=3

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 11/209 (5%)

Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           CGGS+I+P +++TAAHC+  PL  PRY   F  I + S     + H+V + I HPNY ++
Sbjct: 279 CGGSIITPEWIVTAAHCVEEPLSSPRYWTAFAGILRQSLMFYGSRHQVEKVISHPNYDSK 338

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
             ++ +DIAL+K+  P+ F++ +KP CL     +         SG+G   Y   K S  L
Sbjct: 339 --TKNNDIALMKLQTPLAFNDLVKPVCLPNPGMMLDLDQECWISGWGA-TYEKGKTSDVL 395

Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
              ++ +I    C+ +      +  + +CA  + G  D+CQGDSGGPL T+   +  + +
Sbjct: 396 NAAMVPLIEPSKCNSKYIYNNLITPAMICAGFLQGSVDSCQGDSGGPLVTLKNGI--WWL 453

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           IG TS+G  C  A  P +Y  V+ +  WI
Sbjct: 454 IGDTSWGSGCAKALRPGVYGNVTVFTDWI 482

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q01177|PLMN_RAT Plasminogen OS=Rattus norvegicus GN=Plg PE=2 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 20/211 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--VMQNILHPNYT 338
           FCGG+LISP +V+TAAHC+     +P + +  L       +  ++ +  V + +L PN  
Sbjct: 608 FCGGTLISPEWVLTAAHCLEK-SSRPEFYKVILGAHEERILGSDVQQIAVTKLVLEPNDA 666

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA--SGFGKLNYFDTKESL 396
                   DIALLK++ P   ++ + PACL   + V +   +   +G+G+     T  + 
Sbjct: 667 --------DIALLKLSRPATITDNVIPACLPSPNYVVADRTLCYITGWGETK--GTPGAG 716

Query: 397 RLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
           RL +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y
Sbjct: 717 RLKEAQLPVIENKVCNRAEYLNNRVKSTELCAGHLAGGIDSCQGDSGGPLVCFEKD--KY 774

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            + G+TS+G  C   N P +Y RVS YV WI
Sbjct: 775 ILQGVTSWGLGCARPNKPGVYVRVSRYVNWI 805

Angiostatin is an angiogenesis inhibitor that blocks neovascularization and growth of experimental primary and metastatic tumors in vivo.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|Q7M4I3|SP4_MEGPE Venom protease OS=Megabombus pennsylvanicus PE=1 SV=1

 Score =  120 bits (300), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 20/229 (8%)

Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
           M  +GF       K  +W CGGSL    +V+TAAHC        R +    I  L+    
Sbjct: 15  MVALGFHNYRQPKKSPEWKCGGSLRISRHVLTAAHCAIH-----RSLYVVRIADLNLKRD 69

Query: 323 DNIHRVMQ-----NILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN-----RAH 372
           D+    +Q      ++HP+Y    +  + DIA+LK+   V FSE ++P CL      R +
Sbjct: 70  DDGAHPIQMGIESKLIHPDYVY--SEHHDDIAILKLEKDVSFSEYIRPICLPIEESLRNN 127

Query: 373 NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK 432
           N        +G+G+L Y     S  LM+V + ++ N  C +  + +  + +CA    G K
Sbjct: 128 NFIGYNPFVAGWGRLRY-KGPLSDALMEVQVPVVRNKVCKRAYSDVSDTVICAGYPKGRK 186

Query: 433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYV 481
           D+CQGDSGGPL  ++P    Y  IG+ SYG +C     P +YTRV+ Y+
Sbjct: 187 DSCQGDSGGPL--MIPQESTYYEIGVVSYGHECALPKYPGVYTRVTSYL 233

Megabombus pennsylvanicus (taxid: 28643)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9BYE2|TMPSD_HUMAN Transmembrane protease serine 13 OS=Homo sapiens GN=TMPRSS13 PE=2 SV=3

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 122/249 (48%), Gaps = 43/249 (17%)

Query: 264 AEVGFLEEGGTMKDVKW------------FCGGSLISPNYVMTAAHCITSPLGKPRYVRF 311
           A  G +  G    D KW             CGG+LI   +V+TAAHC           R 
Sbjct: 316 AMTGRIVGGALASDSKWPWQVSLHFGTTHICGGTLIDAQWVLTAAHCFF-------VTRE 368

Query: 312 GLITKLS-YSVTDNIHR------VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLK 364
            ++     Y+ T N+H+      + + I++ NYT E     +DIAL++++ P+  S  + 
Sbjct: 369 KVLEGWKVYAGTSNLHQLPEAASIAEIIINSNYTDE--EDDYDIALMRLSKPLTLSAHIH 426

Query: 365 PACLNRAHNVKS--PTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ---ETTLI 419
           PACL       S   T   +GFGK    D K S  L +V +++I+   C+     ++ L 
Sbjct: 427 PACLPMHGQTFSLNETCWITGFGKTRETDDKTSPFLREVQVNLIDFKKCNDYLVYDSYLT 486

Query: 420 SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYT 475
              +CA  + GG+D+CQGDSGGPL      +C  N    + G+TS+G  CG  N P +YT
Sbjct: 487 PRMMCAGDLRGGRDSCQGDSGGPL------VCEQNNRWYLAGVTSWGTGCGQRNKPGVYT 540

Query: 476 RVSYYVPWI 484
           +V+  +PWI
Sbjct: 541 KVTEVLPWI 549

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
307185656	320	Serine protease snake [Camponotus florid	0.523	0.859	0.363	5e-51
345491216	297	PREDICTED: serine protease snake-like [N	0.533	0.942	0.359	6e-50
322799165	326	hypothetical protein SINV_14825 [Solenop	0.457	0.736	0.432	3e-49
332029078	333	Serine protease snake [Acromyrmex echina	0.495	0.780	0.357	6e-48
242018759	310	serine protease snake precursor, putativ	0.521	0.883	0.339	5e-46
270015211	277	serine protease P43 [Tribolium castaneum	0.428	0.812	0.465	1e-45
189233678	506	PREDICTED: similar to trypsin-like serin	0.518	0.537	0.353	2e-45
242003106	439	serine protease snake precursor, putativ	0.426	0.510	0.422	2e-44
170047441	317	plasminogen [Culex quinquefasciatus] gi|	0.426	0.706	0.438	2e-44
4530064	384	trypsin-like serine protease [Ctenocepha	0.426	0.583	0.423	3e-44

>gi|307185656|gb|EFN71578.1| Serine protease snake [Camponotus floridanus]

 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 179/349 (51%), Gaps = 74/349 (21%)

Query: 153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFV 212
            QC +Y+ +  E+  +    +  G   V ++C I+  P+IIGG  AK  EFPH A +G+ 
Sbjct: 35  EQCKEYADLVYETENSPTLRINAGSNKV-SRCAIIETPLIIGGIPAKLAEFPHMAVIGY- 92

Query: 213 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEG 272
              G    + W CGGS+IS N++++AAHC+ SP  G  +K             VG ++  
Sbjct: 93  ---GKNDAMSWDCGGSIISENFILSAAHCLESPDKGPAIK-----------VRVGLID-- 136

Query: 273 GTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
                        L +P  VM           + RY                   + + I
Sbjct: 137 -------------LSAPGDVM-----------QERY-------------------ITERI 153

Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
            HP+Y      +YHDIALLK+  P+E +  ++PACL     +   +AIASGFGK +Y   
Sbjct: 154 QHPDYKP--WVKYHDIALLKLDRPLELNPRVRPACLEGNSQIPGKSAIASGFGKTSYDSN 211

Query: 393 KESLRLMKVVLDIINNDTCSKQETT----------LISSQLCATVMAGGKDTCQGDSGGP 442
             S  LMKV L+ I+ D C K              LI S LCA +M GGKDTCQGDSGGP
Sbjct: 212 IGSNELMKVQLNFISEDDCKKSYAEDLGTRGLPDGLIQSLLCAGIMEGGKDTCQGDSGGP 271

Query: 443 LQTIMPD-LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           LQ ++ +  CMY+I+G+TS+G+ C    +PAIYTR+S Y+ W+ +TVWP
Sbjct: 272 LQRVLAEPYCMYSIVGVTSFGKFCAFKASPAIYTRISSYLDWVENTVWP 320

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491216|ref|XP_003426550.1| PREDICTED: serine protease snake-like [Nasonia vitripennis]

 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 184/356 (51%), Gaps = 76/356 (21%)

Query: 154 QCTQYSKIQDESPIALAPALVGGVRY-VRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFV 212
           +C +Y+++     +A  P L  GV+  + ++C I+  P+I+GG +AK  EFPH   VGF 
Sbjct: 2   ECKEYAELVTREEVA--PVLRMGVQTNLVSECGIVETPLIVGGVKAKSNEFPHMVAVGFG 59

Query: 213 E--EGGTMKD--VKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF 268
           +  E  +  D  V W CGGS+IS N+V+TA+HC+ S   G  ++                
Sbjct: 60  KPPENSSSVDFEVSWECGGSIISENFVLTASHCLESKDRGPAIR---------------- 103

Query: 269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRV 328
           +  G T+          L  P               +P Y    +I ++ +         
Sbjct: 104 IRAGSTL----------LKDP---------------EPGYQERVVIERIKH--------- 129

Query: 329 MQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN 388
                 PNYT    ++Y+DIALL++  P+E S  ++PACL   H      AIASGFGK  
Sbjct: 130 ------PNYTL--PARYNDIALLRLEKPLELSGAVRPACLEIEHEPVGKVAIASGFGKTA 181

Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQ----------ETTLISSQLCATVMAGGKDTCQGD 438
           Y +   S  LMKV L+ I+ D C +            + LI S LCA VM GGKDTCQGD
Sbjct: 182 YDEAVGSNELMKVQLNYISKDDCERSYKIDIGGRQLPSGLIPSLLCAGVMEGGKDTCQGD 241

Query: 439 SGGPLQTIMPD-LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           SGGPLQ ++ +  CMY+++G+TS+G+ C   N+PA+Y+RVS YV WI   VWP + 
Sbjct: 242 SGGPLQRVLSEPYCMYSLVGVTSFGKFCAFENSPAMYSRVSSYVDWIESVVWPGEL 297

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799165|gb|EFZ20604.1| hypothetical protein SINV_14825 [Solenopsis invicta]

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 157/261 (60%), Gaps = 21/261 (8%)

Query: 242 ITSPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 301
           I +PL+   V+A  +   F  MA +G+        D+ W CGGS+IS N+++TAAHC+ S
Sbjct: 75  IETPLIIGGVQA--KHAEFPHMAVIGY-----GKSDISWQCGGSIISENFILTAAHCMES 127

Query: 302 P-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFS 360
           P  G    VR GLI   +   +     V + I +P+Y  + + +YHDIALLK+  P+E +
Sbjct: 128 PDKGPASKVRAGLIDLTNPGDSMQERDVAERITYPDY--KASIRYHDIALLKLDRPLELN 185

Query: 361 ETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--- 417
             ++P CL     +   +AIASGFGK +Y     S +LMKV L+ I+ D C +       
Sbjct: 186 PRVRPTCLEVNSQIPGKSAIASGFGKTSYESNIGSNKLMKVQLNYISEDKCKEAYAEDLG 245

Query: 418 -------LISSQLCATVMAGGKDTCQGDSGGPLQTIMPD-LCMYNIIGITSYGRQCGHAN 469
                  LISS LCA +M GGKDTCQGDSGGPLQ I+ +  CMY+++G+TS+G+ C   +
Sbjct: 246 TRRLPDGLISSLLCAGIMEGGKDTCQGDSGGPLQRILSEPYCMYSVVGVTSFGKFCAFKD 305

Query: 470 TPAIYTRVSYYVPWIVHTVWP 490
           +PAIYTRVS Y+ WI  TVWP
Sbjct: 306 SPAIYTRVSSYLDWIESTVWP 326

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029078|gb|EGI69092.1| Serine protease snake [Acromyrmex echinatior]

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 177/338 (52%), Gaps = 78/338 (23%)

Query: 151 FPHQCTQYSKIQDESPIALAPAL-VGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEV 209
            P+QC +Y+ +  E+    +P L +  V    ++C ++ +P+IIGG +AK+ EFPH A +
Sbjct: 27  LPNQCKEYADLVYET--ESSPTLRINAVSNKVSRCAVVEIPLIIGGIQAKHAEFPHMAVI 84

Query: 210 GFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFL 269
           G+       KDV W CGGS+IS N+++TAAHC+ SP  G  +K             VG +
Sbjct: 85  GY------GKDVSWQCGGSIISENFILTAAHCMESPDKGPAIK-----------VRVGLI 127

Query: 270 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM 329
                          +L++P   M   +                              + 
Sbjct: 128 ---------------NLLTPGDAMQERN------------------------------IA 142

Query: 330 QNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY 389
           + I +P+Y    + +YHDIALLK+  P++ +  ++PACL     +   +AIASGFGK +Y
Sbjct: 143 ERIKYPDYKF--SVRYHDIALLKLEQPLKLNPRVRPACLEIESQLPGKSAIASGFGKTSY 200

Query: 390 FDTKESLRLMKVVLDIINNDTCSKQETT----------LISSQLCATVMAGGKDTCQGDS 439
             +  S  LMKV L+ I+ D C K              LISS LCA +M GGKDTCQGDS
Sbjct: 201 ESSIGSNELMKVQLNYISEDKCKKTYAEDLGTRRLPDGLISSLLCAGIMEGGKDTCQGDS 260

Query: 440 GGPLQTIMPD-LCMYNIIGITSYGRQCGHANTPAIYTR 476
           GGPLQ I+ +  CMY+I+G+TS+G+ C   ++PAIYTR
Sbjct: 261 GGPLQRILTEPYCMYSIVGVTSFGKFCAFKSSPAIYTR 298

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018759|ref|XP_002429841.1| serine protease snake precursor, putative [Pediculus humanus corporis] gi|212514859|gb|EEB17103.1| serine protease snake precursor, putative [Pediculus humanus corporis]

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 177/353 (50%), Gaps = 79/353 (22%)

Query: 154 QCTQYSKI--QDESPIAL-APALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVG 210
           +C +Y  +  Q+ S + L AP  +   +   +QC + ++P+IIGG +AK  EFPH   +G
Sbjct: 21  ECQEYGDLIYQESSALTLLAPQQMKMNKI--SQCTMDSVPLIIGGKKAKPQEFPHMVAIG 78

Query: 211 FVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLE 270
           +   G  ++ + W CGGSLIS N+V++AAHC  S   G           F+ M       
Sbjct: 79  Y---GENIESLLWLCGGSLISENFVLSAAHCSKSGNRGFAT--------FVKMGVTNLNS 127

Query: 271 EGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQ 330
           +   +++VK                                                +  
Sbjct: 128 DNSWIQNVK------------------------------------------------IKN 139

Query: 331 NILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK--SPTAIASGFGKLN 388
            I HP Y  +  S+Y+DIAL K+   V F+E ++PACLN   + +      IA+G+GK N
Sbjct: 140 RINHPKY--KPPSKYNDIALFKLFEKVRFNEFVRPACLNTNDDEEFLFKRGIATGWGKEN 197

Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETT----------LISSQLCATVMAGGKDTCQGD 438
           Y   + +  LMKV +D I+   C+K  ++          +++SQLCA  + GGKDTC GD
Sbjct: 198 YDSYEGTTDLMKVSIDFIDRSICNKTYSSDVGEKLLKRGIVTSQLCAGNLNGGKDTCHGD 257

Query: 439 SGGPLQTI-MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           SGGPLQ +     C Y+I+G+TS+G+ CG  N+PA+YTRVS YVPWI   VWP
Sbjct: 258 SGGPLQILNQSPRCTYSIVGVTSFGKFCGFKNSPAVYTRVSKYVPWIESIVWP 310

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015211|gb|EFA11659.1| serine protease P43 [Tribolium castaneum]

 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/234 (46%), Positives = 146/234 (62%), Gaps = 9/234 (3%)

Query: 260 FISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS-PLGKPRYVRFGLITKLS 318
           F  MA +G+ E   +   + W CGG+LIS  YV+TAAHC+ S  LG  + VRFG  T L 
Sbjct: 48  FPHMAVIGYGETADSQ--LGWDCGGTLISELYVLTAAHCLESRELGPSQLVRFG-TTHLD 104

Query: 319 YSVTDNIHRVM-QNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP 377
               D   RV+   I HP+Y  +   + +DI L+K+  PVEF+  ++PACLN A      
Sbjct: 105 EPDPDLQERVVVARIPHPDY--KPPLKANDIGLIKLEEPVEFTPHVRPACLNTADINPGR 162

Query: 378 TAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQ 436
            A+ASGFGKL+Y     S  LMKV+L++  N+ CSK     +  + LCA  + GGKDTCQ
Sbjct: 163 KALASGFGKLSYDAETGSKNLMKVLLNVYPNNRCSKAIREQIKDTMLCAGHLEGGKDTCQ 222

Query: 437 GDSGGPLQTIMPD-LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW 489
           GDSGGPLQ ++    CMY++IG+TS+G+ CG AN PAIYT++S Y+ WI   VW
Sbjct: 223 GDSGGPLQIVLEKPYCMYSVIGVTSFGKFCGFANAPAIYTKISAYISWIESIVW 276

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233678|ref|XP_969745.2| PREDICTED: similar to trypsin-like serine protease [Tribolium castaneum] gi|270015111|gb|EFA11559.1| serine protease P44 [Tribolium castaneum]

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 177/351 (50%), Gaps = 79/351 (22%)

Query: 153 HQCTQYSKIQDESPIALAPALVGG---VRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEV 209
            +C +YSK    + +  A  LV     V Y   +CD   + +I+GG  A  GEFP  A +
Sbjct: 221 QKCQEYSKAI--TGVVQAIPLVTNTEVVSYSFVKCDYNGVALIVGGKPASAGEFPFMAAI 278

Query: 210 GFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFL 269
           GF  +      V+W CGG+LIS  YV+TAAHC                          + 
Sbjct: 279 GFYVDN----KVEWRCGGTLISEEYVLTAAHCT-------------------------YT 309

Query: 270 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIH--- 326
            +G T                               P+ VR G +  LS     ++H   
Sbjct: 310 RDGDT-------------------------------PKIVRLGDL-DLSRDDDGSVHTDY 337

Query: 327 RVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
            V   ++HP Y      +Y+DIAL++++  V F++ ++PACL     V+ P AIA+G+GK
Sbjct: 338 NVRNIVVHPRY--RYPLKYNDIALIQLSTTVRFTKFIRPACLYTKSQVELPQAIATGWGK 395

Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQETT-------LISSQLCATVMAGGKDTCQGDS 439
            +Y   + S +LMKV L+I +ND C++   T       + S+ +CA  + GG+DTCQGDS
Sbjct: 396 TDYAAAEISDKLMKVSLNIYSNDRCAQTYQTSKHLPQGIKSNMICAGELRGGQDTCQGDS 455

Query: 440 GGPLQ-TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW 489
           GGPL  T   + C + +IG+TS+G+ CG ANTPAIYTRVS YVPWI  T+W
Sbjct: 456 GGPLLITKKGNQCKFYVIGVTSFGKSCGQANTPAIYTRVSEYVPWIEKTIW 506

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003106|ref|XP_002422611.1| serine protease snake precursor, putative [Pediculus humanus corporis] gi|212505412|gb|EEB09873.1| serine protease snake precursor, putative [Pediculus humanus corporis]

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 147/246 (59%), Gaps = 22/246 (8%)

Query: 260 FISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSY 319
           F  MA VGF +     + + W CGG+LIS  +V+TAAHC ++  G P  VR G    L  
Sbjct: 202 FPHMAAVGFRDRN--KQGIAWNCGGTLISEQFVLTAAHCTSTSSGPPVKVRLGEYNLLKN 259

Query: 320 SVTDNIH----RVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK 375
              D  H     V   I HP Y  +  S+YHDIALLK++  V+F + ++PACL       
Sbjct: 260 D--DGAHPVDYAVSDIITHPEY--KPPSKYHDIALLKLSRRVQFFKHIRPACLYLGDTYS 315

Query: 376 SPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ----------ETTLISSQLCA 425
              AIA+G+G++ ++D K S  L KVVL I++NDTC++              ++ SQ+CA
Sbjct: 316 LTKAIATGWGRM-FYDGKSSDILQKVVLSIVDNDTCNRLYKFNVKTEVLSRGIVDSQVCA 374

Query: 426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
             ++GGKDTCQGDSGGPL +I    C+++I+GITS+G+ C   N+  +YT+VS Y+PWI 
Sbjct: 375 GELSGGKDTCQGDSGGPL-SITNTKCIHHIVGITSFGKSCALPNSTGVYTKVSAYIPWIE 433

Query: 486 HTVWPD 491
             VWP+
Sbjct: 434 SIVWPE 439

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047441|ref|XP_001851229.1| plasminogen [Culex quinquefasciatus] gi|167869896|gb|EDS33279.1| plasminogen [Culex quinquefasciatus]

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/237 (43%), Positives = 138/237 (58%), Gaps = 13/237 (5%)

Query: 260 FISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSY 319
           F   A +G+  E    K +++ CGGSLIS  +V+TAAHC++    KP  VR G       
Sbjct: 84  FPHQALIGYQAESDPRK-IEFKCGGSLISERFVLTAAHCLSGA--KPVVVRLGENDLRDE 140

Query: 320 SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA 379
                   +   + HP YT      YHD+AL+K+A  V F+  ++PACL   HN+   +A
Sbjct: 141 DDDQVDFDIEAIVRHPEYTIR--RAYHDVALVKLAQNVIFTRQIRPACLWTGHNLNISSA 198

Query: 380 IASGFGKLNYFDTKESLRLMKVVLDIINNDTCS------KQETTLISSQLCATVMAGGKD 433
           IA+GFG+   FD   S  LMKV LD+++   C+      K +  LI  QLC    AGGKD
Sbjct: 199 IATGFGRTE-FDGSTSDVLMKVQLDVLDKSECNGFTTNRKFKMGLIEGQLCVGSHAGGKD 257

Query: 434 TCQGDSGGPLQTIMPDL-CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW 489
           TCQGDSGGPL+T+  +  CM++I+GITS G  CG+  +PAIYTRVS YV WI   VW
Sbjct: 258 TCQGDSGGPLETVTEEKGCMFHIVGITSVGSACGYGKSPAIYTRVSSYVDWIEKVVW 314

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4530064|gb|AAD21841.1| trypsin-like serine protease [Ctenocephalides felis]

 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 149/243 (61%), Gaps = 19/243 (7%)

Query: 260 FISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLIT-KLS 318
           F  MA +G+ E  G    V W+CGG+LISP YV+TAAHC +    +P  VR G    K S
Sbjct: 146 FPHMAAIGWTETSGA---VNWWCGGTLISPEYVLTAAHCASVNSEQPDIVRLGEHNLKHS 202

Query: 319 YSVTDNIHRVMQNIL-HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP 377
               D I   + +++ HP+Y     S+Y+DIAL+K+  PV  S +++P+CL       + 
Sbjct: 203 DDGADPIDVPVDSVITHPSY--HYPSKYNDIALVKLRYPVSLSNSIRPSCLWANDEFDTD 260

Query: 378 TAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCS----------KQETTLISSQLCATV 427
           ++IA+G+GK++Y +++ S  L+KVVL II+N  C+          +    ++ +Q+CA  
Sbjct: 261 SSIATGWGKIDYAESR-SDDLLKVVLKIIDNRQCAPLYVDQINRRRLRNGIVDTQMCAGE 319

Query: 428 MAGGKDTCQGDSGGPLQ-TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVH 486
           + GGKDTCQGDSGGPLQ T   + C++ I+GIT +GR CG  N+P +YTRVS YV WI  
Sbjct: 320 LDGGKDTCQGDSGGPLQITXQSNKCIFYIVGITXFGRGCGAPNSPGVYTRVSKYVDWIES 379

Query: 487 TVW 489
            VW
Sbjct: 380 VVW 382

Source: Ctenocephalides felis

Species: Ctenocephalides felis

Genus: Ctenocephalides

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
FB|FBgn0003450	435	snk "snake" [Drosophila melano	0.455	0.549	0.397	4.7e-50
FB|FBgn0039628	319	CG11841 [Drosophila melanogast	0.388	0.639	0.375	9.3e-41
FB|FBgn0031619	314	CG3355 [Drosophila melanogaste	0.369	0.617	0.366	7.8e-39
UNIPROTKB|I3LBF8	244	TMPRSS2 "Uncharacterized prote	0.377	0.811	0.368	1.2e-38
MGI|MGI:1923810	342	Prss8 "protease, serine, 8 (pr	0.384	0.590	0.371	3e-38
ZFIN|ZDB-GENE-060824-5	434	proc "protein C (inactivator o	0.380	0.460	0.356	1.7e-37
ZFIN|ZDB-GENE-050320-109	328	zgc:101788 "zgc:101788" [Danio	0.407	0.652	0.353	2.4e-37
RGD|619973	342	Prss8 "protease, serine, 8" [R	0.384	0.590	0.375	2.7e-37
UNIPROTKB|Q9ES87	342	Prss8 "Prostasin" [Rattus norv	0.384	0.590	0.375	2.7e-37
FB|FBgn0036427	411	CG4613 [Drosophila melanogaste	0.379	0.484	0.373	2e-36

FB|FBgn0003450 snk "snake" [Drosophila melanogaster (taxid:7227)]

 Score = 473 (171.6 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 101/254 (39%), Positives = 152/254 (59%)

Query:   241 CITS-PLVGTMVKAPLRTLLFISMAEVGFLEEGGTM-KDVKWFCGGSLISPNYVMTAAHC 298
             C+ S PL+  +   P R  LF  MA +G+ +  G+  +D+KW CGG+L+S  YV+TAAHC
Sbjct:   179 CVPSVPLI--VGGTPTRHGLFPHMAALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHC 236

Query:   299 ITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE 358
              TS    P  VR G       S T    +++  +LHP Y +  ++ YHDIALLK+   V+
Sbjct:   237 ATSGSKPPDMVRLGARQLNETSATQQDIKILIIVLHPKYRS--SAYYHDIALLKLTRRVK 294

Query:   359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCS---KQE 415
             FSE ++PACL +   ++ PT +A+G+G+  +   K +  L +V LD++   TC    ++E
Sbjct:   295 FSEQVRPACLWQLPELQIPTVVAAGWGRTEFLGAKSNA-LRQVDLDVVPQMTCKQIYRKE 353

Query:   416 TTL----ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL-CMYNIIGITSYGRQCGHANT 470
               L    I  Q CA  + GG+DTCQGDSGGP+  ++P+  C+  ++GITS+G+ C   N 
Sbjct:   354 RRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPEYNCVAFVVGITSFGKFCAAPNA 413

Query:   471 PAIYTRVSYYVPWI 484
             P +YTR+  Y+ WI
Sbjct:   414 PGVYTRLYSYLDWI 427

GO:0009950 "dorsal/ventral axis specification" evidence=NAS;TAS

GO:0008063 "Toll signaling pathway" evidence=IGI;NAS;TAS

GO:0016485 "protein processing" evidence=IGI

GO:0007311 "maternal specification of dorsal/ventral axis, oocyte, germ-line encoded" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS;TAS

GO:0008233 "peptidase activity" evidence=TAS

FB|FBgn0039628 CG11841 [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 9.3e-41, Sum P(2) = 9.3e-41
 Identities = 84/224 (37%), Positives = 118/224 (52%)

Query:   274 TMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNI 332
             T  ++KWFCGG+LIS   V+TAAHC  S  G+   VR G   +L +   TD+       +
Sbjct:    94 TNNEIKWFCGGTLISNRLVLTAAHCFFSEHGEVNVVRLG---ELEFDTDTDDAEPEDFGV 150

Query:   333 L----HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN 388
             L    HP +  E    Y+DI ++++   V+F+    PACL      +  + IA G+G+  
Sbjct:   151 LALKAHPGF--ENPQLYNDIGIVQLDREVKFNRYKHPACLPFDDGEQHESFIAIGWGQKK 208

Query:   389 YFDTKESLRLMKVVLDIINNDTCSKQETT--LIS-----SQLCATVMAGGKDTCQGDSGG 441
              F  KES +L+KV L    +   S  +    L +     SQLC       KDTC GDSGG
Sbjct:   209 -FAQKESKKLLKVQLQGYKDRCVSSVDANDELPNGYEPKSQLCIG-SRDNKDTCNGDSGG 266

Query:   442 PLQTIMPDL-CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
             P+     DL CMY+++GITS G  C   + P+ YTRV Y++ WI
Sbjct:   267 PVLAYHKDLACMYHVMGITSAGITCSTPDIPSAYTRVHYFLNWI 310

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0031619 CG3355 [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 7.8e-39, Sum P(2) = 7.8e-39
 Identities = 77/210 (36%), Positives = 115/210 (54%)

Query:   281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN--IHRVMQNILHPNYT 338
             FCGGSLI+  YV+TAAHC+    G    +   L+ ++  S  D   + +V+Q  +HPNY 
Sbjct:   103 FCGGSLINDRYVLTAAHCVH---GNRDQITIRLL-QIDRSSRDPGIVRKVVQTTVHPNY- 157

Query:   339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLR 397
              +     +D+ALLK+  PV  +  ++P CL  A HN    TA+ +G+G +       +  
Sbjct:   158 -DPNRIVNDVALLKLESPVPLTGNMRPVCLPEANHNFDGKTAVVAGWGLIKEGGVTSNY- 215

Query:   398 LMKVVLDIINNDTC--SKQETTLISSQLCA-TVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
             L +V + +I N  C  ++ +  +    LCA  V  GGKD CQGDSGGPL  I+ +   Y 
Sbjct:   216 LQEVNVPVITNAQCRQTRYKDKIAEVMLCAGLVQQGGKDACQGDSGGPL--IVNE-GRYK 272

Query:   455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
             + G+ S+G  C   N P +Y RVS ++ WI
Sbjct:   273 LAGVVSFGYGCAQKNAPGVYARVSKFLDWI 302

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

UNIPROTKB|I3LBF8 TMPRSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 332 (121.9 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
 Identities = 77/209 (36%), Positives = 120/209 (57%)

Query:   282 CGGSLISPNYVMTAAHCITSPLGKPR-YVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
             CGGS+I+P++++TAAHC+  PL  P+ +  F  I + S+    + +RV + I HPNY  +
Sbjct:    33 CGGSIITPDWIVTAAHCVEEPLNNPKIWTAFAGILRQSFMFYGSGYRVAKVISHPNYDPK 92

Query:   341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA--SGFGKLNYFDTKESLRL 398
               ++ +DIAL+K+  P+ F++ +KP CL     +  PT     SG+G   Y   K S  L
Sbjct:    93 --TKNNDIALMKLQTPMTFNDKVKPVCLPNPGMMLEPTQSCWISGWGA-TYEKGKTSEVL 149

Query:   399 MKVVLDIINNDTC-SKQE-TTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
                ++ +I   +C SKQ    LI+ + +CA  + G  D+CQGDSGGPL T+   +  + +
Sbjct:   150 NAAMVRLIEPWSCNSKQVYNNLITPAMICAGYLQGSVDSCQGDSGGPLVTLKSSI--WWL 207

Query:   456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
             IG TS+G  C  A  P +Y  V+ +  WI
Sbjct:   208 IGDTSWGSGCAKAYRPGVYANVTLFTDWI 236

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:1923810 Prss8 "protease, serine, 8 (prostasin)" [Mus musculus (taxid:10090)]

 Score = 327 (120.2 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
 Identities = 82/221 (37%), Positives = 118/221 (53%)

Query:   282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
             CGGSL+S  +V++AAHC      +  Y V+ G     SYS    +H V Q I H +Y  E
Sbjct:    70 CGGSLVSNKWVVSAAHCFPREHSREAYEVKLGAHQLDSYSNDTVVHTVAQIITHSSYREE 129

Query:   341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLNYFDTKESLR 397
             G SQ  DIA ++++ PV FS  ++P CL  A N   P  +    +G+G +    + ++ R
Sbjct:   130 G-SQ-GDIAFIRLSSPVTFSRYIRPICLPAA-NASFPNGLHCTVTGWGHVAPSVSLQTPR 186

Query:   398 -LMKVVLDIINNDTCS---------KQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
              L ++ + +I+ +TCS         ++  T+    LCA  + GGKD CQGDSGGPL   M
Sbjct:   187 PLQQLEVPLISRETCSCLYNINAVPEEPHTIQQDMLCAGYVKGGKDACQGDSGGPLSCPM 246

Query:   448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
               +  + + GI S+G  CG  N P +YT  S Y  WI H V
Sbjct:   247 EGI--WYLAGIVSWGDACGAPNRPGVYTLTSTYASWIHHHV 285

GO:0001942 "hair follicle development" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISO

GO:0010765 "positive regulation of sodium ion transport" evidence=IGI

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO;IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0045121 "membrane raft" evidence=IDA

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0070633 "transepithelial transport" evidence=IMP

ZFIN|ZDB-GENE-060824-5 proc "protein C (inactivator of coagulation factors Va and VIIIa)" [Danio rerio (taxid:7955)]

 Score = 318 (117.0 bits), Expect = 1.7e-37, Sum P(3) = 1.7e-37
 Identities = 76/213 (35%), Positives = 114/213 (53%)

Query:   279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             ++ CGG LI  N+V+TAAHC+ +       VR G   +  +  ++    V Q+I HP Y 
Sbjct:   218 RFHCGGVLIDENWVLTAAHCLET--SSKFSVRLGDYQRFKFEGSEVTLPVKQHISHPQYN 275

Query:   339 TEGTSQYHDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKLNYFDT 392
                    +DIALL++  PV+FS  + PACL       R  +      I +G+GK N   T
Sbjct:   276 PITVD--NDIALLRLDGPVKFSTYILPACLPSLELAKRMLHRNGTVTIITGWGKNNQSAT 333

Query:   393 KESLRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
               +  L  V L I++N  CS+     +S + LCA V+   KD C+GDSGGP+ T+  D  
Sbjct:   334 SYNSTLHYVELPIVDNKECSRHMMNNLSDNMLCAGVLGQVKDACEGDSGGPMMTLFHDT- 392

Query:   452 MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
              + ++G+ S+G  CG  +   IYT+V+ Y+ WI
Sbjct:   393 -WFLVGLVSWGEGCGQRDKLGIYTKVASYLDWI 424

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-050320-109 zgc:101788 "zgc:101788" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 80/226 (35%), Positives = 124/226 (54%)

Query:   281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
             FCGGSLIS  +V+TAAHC+         V  G  T+   +  +    V + I+H +Y + 
Sbjct:    60 FCGGSLISSEWVLTAAHCLPGVSESSLIVYLGRRTQQGVNTHETSRNVAKIIVHSSYNSN 119

Query:   341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNY-FDTKESLR 397
              T+  +DIALL+++  V F++ ++P CL   ++V S   ++  +G+G +    +      
Sbjct:   120 -TND-NDIALLRLSSAVTFNDYIRPVCLAAQNSVYSAGTSSWITGWGDVQAGVNLPAPGI 177

Query:   398 LMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             L + ++ ++ ND C+      T+ ++ +CA +  GGKDTCQGDSGGP+ T    LC   I
Sbjct:   178 LQETMIPVVANDRCNALLGSGTVTNNMICAGLAKGGKDTCQGDSGGPMVT---RLCTVWI 234

Query:   456 -IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTT 500
               GITS+G  C   N+P +YTRVS Y  WI   +  +Q P   L T
Sbjct:   235 QAGITSWGYGCADPNSPGVYTRVSQYQSWISSKISQNQ-PGFILFT 279

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|619973 Prss8 "protease, serine, 8" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
 Identities = 83/221 (37%), Positives = 119/221 (53%)

Query:   282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
             CGGSL+S  +V++AAHC      K  Y V+ G     S+S    +H V Q I H +Y  E
Sbjct:    70 CGGSLVSNQWVVSAAHCFPREHSKEEYEVKLGAHQLDSFSNDIVVHTVAQIISHSSYREE 129

Query:   341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLNYFDTKESLR 397
             G SQ  DIAL++++ PV FS  ++P CL  A N   P  +    +G+G +    + ++ R
Sbjct:   130 G-SQ-GDIALIRLSSPVTFSRYIRPICLPAA-NASFPNGLHCTVTGWGHVAPSVSLQTPR 186

Query:   398 -LMKVVLDIINNDTCS---------KQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
              L ++ + +I+ +TCS         ++  T+    LCA  + GGKD CQGDSGGPL   +
Sbjct:   187 PLQQLEVPLISRETCSCLYNINAVPEEPHTIQQDMLCAGYVKGGKDACQGDSGGPLSCPI 246

Query:   448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
               L  + + GI S+G  CG  N P +YT  S Y  WI H V
Sbjct:   247 DGL--WYLAGIVSWGDACGAPNRPGVYTLTSTYASWIHHHV 285

GO:0001942 "hair follicle development" evidence=ISO

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IMP

GO:0010765 "positive regulation of sodium ion transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO;IMP

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0043434 "response to peptide hormone stimulus" evidence=IEP

GO:0045121 "membrane raft" evidence=ISO

GO:0046658 "anchored to plasma membrane" evidence=ISO

GO:0051385 "response to mineralocorticoid stimulus" evidence=IEP

GO:0070633 "transepithelial transport" evidence=ISO

UNIPROTKB|Q9ES87 Prss8 "Prostasin" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
 Identities = 83/221 (37%), Positives = 119/221 (53%)

Query:   282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
             CGGSL+S  +V++AAHC      K  Y V+ G     S+S    +H V Q I H +Y  E
Sbjct:    70 CGGSLVSNQWVVSAAHCFPREHSKEEYEVKLGAHQLDSFSNDIVVHTVAQIISHSSYREE 129

Query:   341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLNYFDTKESLR 397
             G SQ  DIAL++++ PV FS  ++P CL  A N   P  +    +G+G +    + ++ R
Sbjct:   130 G-SQ-GDIALIRLSSPVTFSRYIRPICLPAA-NASFPNGLHCTVTGWGHVAPSVSLQTPR 186

Query:   398 -LMKVVLDIINNDTCS---------KQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
              L ++ + +I+ +TCS         ++  T+    LCA  + GGKD CQGDSGGPL   +
Sbjct:   187 PLQQLEVPLISRETCSCLYNINAVPEEPHTIQQDMLCAGYVKGGKDACQGDSGGPLSCPI 246

Query:   448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
               L  + + GI S+G  CG  N P +YT  S Y  WI H V
Sbjct:   247 DGL--WYLAGIVSWGDACGAPNRPGVYTLTSTYASWIHHHV 285

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0036427 CG4613 [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
 Identities = 80/214 (37%), Positives = 119/214 (55%)

Query:   281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTT 339
             FCGG+LI+  YV+TAAHC+     +   VR   + +L  S T   + R +    H +   
Sbjct:   198 FCGGTLINDRYVLTAAHCVHGMDMRGVSVR---LLQLDRSSTHLGVTRSVA-FAHAHVGY 253

Query:   340 EGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLR 397
             +  S  HDIALL++  P+   +T++PACL  N   N     AI +G+G L+      S  
Sbjct:   254 DPVSLVHDIALLRLDQPIPLVDTMRPACLPSNWLQNFDFQKAIVAGWG-LSQEGGSTSSV 312

Query:   398 LMKVVLDIINNDTC--SKQETTLISSQLCAT-VMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
             L +VV+ II N  C  +   + ++ + +CA  V  GG+D CQGDSGGPL  I+ D  ++ 
Sbjct:   313 LQEVVVPIITNAQCRATSYRSMIVDTMMCAGYVKTGGRDACQGDSGGPL--IVRDR-IFR 369

Query:   455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI-VHT 487
             + G+ S+G  C   + P +YTRVS Y+ WI V+T
Sbjct:   370 LAGVVSFGYGCAKPDAPGVYTRVSRYLEWIAVNT 403

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.6	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	525
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	2e-62
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	3e-62
pfam00089	218	pfam00089, Trypsin, Trypsin	3e-46
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	4e-18
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	7e-13
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	1e-12
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-10
pfam00089	218	pfam00089, Trypsin, Trypsin	3e-07
COG3591	251	COG3591, COG3591, V8-like Glu-specific endopeptida	0.002

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  203 bits (518), Expect = 2e-62
 Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 11/211 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           + FCGGSLISP +V+TAAHC+         VR G    LS      + +V + I+HPNY 
Sbjct: 25  RHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLG-SHDLSSGEEGQVIKVSKVIIHPNYN 83

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
                  +DIALLK+  PV  S+ ++P CL  +  +     T   SG+G+ +        
Sbjct: 84  PSTYD--NDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPD 141

Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            L +V + I++N TC +       +  + LCA  + GGKD CQGDSGGPL   + +   +
Sbjct: 142 TLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPL---VCNDGRW 198

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            ++GI S+G  C     P +YTRVS Y+ WI
Sbjct: 199 VLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  203 bits (518), Expect = 3e-62
 Identities = 80/211 (37%), Positives = 114/211 (54%), Gaps = 10/211 (4%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           + FCGGSLISP +V+TAAHC+ S       VR G     S      + +V + I+HPNY 
Sbjct: 24  RHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNY- 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              ++  +DIALLK+  PV  S+ ++P CL  +  +     T   SG+G+ +        
Sbjct: 83  -NPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPL-PD 140

Query: 397 RLMKVVLDIINNDTCSK---QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            L +V + I++N  C +      T+  + LCA  + GGKD CQGDSGGPL  +  D    
Sbjct: 141 VLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPL--VCNDNGRG 198

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            ++GI S+G  C   N P +YTRVS Y+ WI
Sbjct: 199 VLVGIVSWGSGCARPNYPGVYTRVSSYLDWI 229

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  160 bits (407), Expect = 3e-46
 Identities = 78/210 (37%), Positives = 110/210 (52%), Gaps = 19/210 (9%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K FCGGSLIS N+V+TAAHC+++       V  G    +     +    V + I+HPNY 
Sbjct: 24  KHFCGGSLISENWVLTAAHCVSNAKSVR--VVLGAHNIVLREGGEQKFDVKKVIVHPNY- 80

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESL 396
                  +DIALLK+  PV   +T++P CL  A +      T   SG+G        ++L
Sbjct: 81  --NPDTDNDIALLKLKSPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTL 138

Query: 397 RLMKVVLDIINNDTCSKQE-TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           +  +V + +++ +TC      T+  + +CA   AGGKD CQGDSGGPL      +C    
Sbjct: 139 Q--EVTVPVVSRETCRSAYGGTVTDNMICAG--AGGKDACQGDSGGPL------VCSDGE 188

Query: 456 -IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            IGI S+G  C   N P +YT VS Y+ WI
Sbjct: 189 LIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 86.1 bits (213), Expect = 4e-18
 Identities = 53/226 (23%), Positives = 79/226 (34%), Gaps = 35/226 (15%)

Query: 281 FCGGSLISPNYVMTAAHCIT-SPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FCGGS +   YV+TAAHC   S        R  ++  L+ S       V    +H  Y+ 
Sbjct: 62  FCGGSKLGGRYVLTAAHCADASSPISSDVNR--VVVDLNDSSQAERGHVRTIYVHEFYSP 119

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYF-DTKESLRL 398
              +  +DIA+L++A               +  +  +     +    ++   +    +  
Sbjct: 120 G--NLGNDIAVLELARAA-------SLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTT 170

Query: 399 MKVVLDIINNDTCSKQET-TLISSQLCATVM----------------AG--GKDTCQGDS 439
              V       T   +     +    CA                   AG   KD CQGDS
Sbjct: 171 PSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRPPKDACQGDS 230

Query: 440 GGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
           GGP+             G+ S+G   CG    P +YT VS Y  WI
Sbjct: 231 GGPI--FHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWI 274

Length = 413

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+         VR G    LS      + +V + I+HPNY        +DIALLK+ 
Sbjct: 41  AAHCVRGSDPSNIRVRLG-SHDLSSGEEGQVIKVSKVIIHPNYNPSTYD--NDIALLKLK 97

Query: 66  PPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNY 100
            PV  S+ ++P CL  +  +     T   SG+G+ + 
Sbjct: 98  EPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSE 134

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+ S       VR G     S      + +V + I+HPNY    ++  +DIALLK+ 
Sbjct: 40  AAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNY--NPSTYDNDIALLKLK 97

Query: 66  PPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNY 100
            PV  S+ ++P CL  +  +     T   SG+G+ + 
Sbjct: 98  RPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSE 134

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG  A+ G FP Q  +        +   K FCGGSLIS N+V+TAAHC+++ 
Sbjct: 1   IVGGDEAQPGSFPWQVSL-------QVSSGKHFCGGSLISENWVLTAAHCVSNA 47

Length = 218

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+++       V  G    +     +    V + I+HPNY        +DIALLK+ 
Sbjct: 40  AAHCVSNAKSVR--VVLGAHNIVLREGGEQKFDVKKVIVHPNY---NPDTDNDIALLKLK 94

Query: 66  PPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 101
            PV   +T++P CL  A +      T   SG+G     
Sbjct: 95  SPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTKTL 132

Length = 218

>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 26/166 (15%)

Query: 282 CGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
              +LI PN V+TA HCI SP  G+                   I ++   +       E
Sbjct: 66  TAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVNSDGGPFYGITKIEIRVYPGELYKE 125

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-SGF--GKLNYFDTKESLR 397
             +  +D+    +   +   + +     N A   K+   I   G+   K N     ES  
Sbjct: 126 DGA-SYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPGDKPNIGTMWES-- 182

Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPL 443
                ++ I  +                       DT  G SG P+
Sbjct: 183 --TGKVNSIKGNKLFYD-----------------ADTLPGSSGSPV 209

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	100.0
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.97
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	99.76
KOG3627|consensus	256		99.72
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.68
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.62
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.58
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.14
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.02
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	98.9
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.9
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	97.86
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.49
PRK10898	353	serine endoprotease; Provisional	97.37
PRK10139	455	serine endoprotease; Provisional	97.37
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	97.18
PRK10942	473	serine endoprotease; Provisional	97.14
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	92.76
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	88.63
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	88.47
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	88.31
PF00548	172	Peptidase_C3: 3C cysteine protease (picornain 3C);	86.81
PF00863	235	Peptidase_C4: Peptidase family C4 This family belo	85.85
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	82.51
PRK10139	455	serine endoprotease; Provisional	80.34

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=4.8e-40  Score=311.18  Aligned_cols=204  Identities=39%  Similarity=0.672  Sum_probs=171.5

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .+.|+||||+++||||||||+.......+.|++|...............|.++++||.|+.  ....+|||||||++|+.
T Consensus        24 ~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~DiAll~L~~~~~  101 (232)
T cd00190          24 RHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNYNP--STYDNDIALLKLKRPVT  101 (232)
T ss_pred             cEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCCCceEEEEEEEEEECCCCCC--CCCcCCEEEEEECCccc
Confidence            5889999999999999999998755567888998773222212234445999999999988  56789999999999999


Q ss_pred             cCCCccceecCCC--CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCCcEEEEeCCCCcC
Q psy3170         359 FSETLKPACLNRA--HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKD  433 (525)
Q Consensus       359 ~~~~v~picL~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~~~Ca~~~~~~~~  433 (525)
                      ++++++|||||..  ....+..+.++|||...... ..+..+++..+.+++...|...+.   .+...++|+.......+
T Consensus       102 ~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~  180 (232)
T cd00190         102 LSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGG-PLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKD  180 (232)
T ss_pred             CCCcccceECCCccccCCCCCEEEEEeCCcCCCCC-CCCceeeEEEeeeECHHHhhhhccCcccCCCceEeeCCCCCCCc
Confidence            9999999999988  45667899999999876542 466789999999999999998775   36788999987544778


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      .|.|||||||++..++  +++|+||+|++..|.....|.+|++|+.|.+||+++
T Consensus       181 ~c~gdsGgpl~~~~~~--~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         181 ACQGDSGGPLVCNDNG--RGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             cccCCCCCcEEEEeCC--EEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence            9999999999997664  899999999998898667899999999999999874

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=3.9e-38  Score=302.86  Aligned_cols=234  Identities=36%  Similarity=0.639  Sum_probs=191.5

Q ss_pred             CCCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeeccee
Q psy3170         188 AMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVG  267 (525)
Q Consensus       188 ~~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (525)
                      ...||+||.++..++|||++++.....                                                     
T Consensus         9 ~~~~i~~g~~~~~~~~Pw~~~l~~~~~-----------------------------------------------------   35 (256)
T KOG3627|consen    9 PEGRIVGGTEAEPGSFPWQVSLQYGGN-----------------------------------------------------   35 (256)
T ss_pred             ccCCEeCCccCCCCCCCCEEEEEECCC-----------------------------------------------------
Confidence            357899999999999999999976431                                                     


Q ss_pred             eeecCCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeeccccccc--ceEE-EEEEEeCCCCCCCCCC
Q psy3170         268 FLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTD--NIHR-VMQNILHPNYTTEGTS  343 (525)
Q Consensus       268 ~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~--~~~~-v~~i~~hp~y~~~~~~  343 (525)
                                ..++|+|+||+++||||||||+... .. .+.|++|.+.........  .... +.++++||+|+.  ..
T Consensus        36 ----------~~~~Cggsli~~~~vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~~~v~~~i~H~~y~~--~~  102 (256)
T KOG3627|consen   36 ----------GRHLCGGSLISPRWVLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLVGDVEKIIVHPNYNP--RT  102 (256)
T ss_pred             ----------cceeeeeEEeeCCEEEEChhhCCCCCCc-ceEEEECccccccccccCchhhhceeeEEEECCCCCC--CC
Confidence                      1579999999999999999999873 22 788888876222221222  1333 778889999998  55


Q ss_pred             cc-cceEEEEECCCcccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-
Q psy3170         344 QY-HDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-  417 (525)
Q Consensus       344 ~~-~DIAll~L~~~~~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-  417 (525)
                      .. ||||||+|++++.|++.|+|||||....    ..+..+.++|||.+.......+..|++..+.+++...|...+.. 
T Consensus       103 ~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~  182 (256)
T KOG3627|consen  103 LENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDVPIISNSECRRAYGGL  182 (256)
T ss_pred             CCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEEeEcChhHhcccccCc
Confidence            55 9999999999999999999999985442    34478999999988765435678899999999999999988764 


Q ss_pred             --CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhccccc
Q psy3170         418 --LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       418 --~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                        +...++|++....+.++|.|||||||++..++  +++++||+|||.. |+..+.|++||+|+.|.+||++.+.
T Consensus       183 ~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~--~~~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~~~~  255 (256)
T KOG3627|consen  183 GTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNG--RWVLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKENIG  255 (256)
T ss_pred             cccCCCEEeeCccCCCCccccCCCCCeEEEeeCC--cEEEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHHHhc
Confidence              55678999976667889999999999997665  7999999999987 9977789999999999999998874

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=3.3e-37  Score=291.42  Aligned_cols=224  Identities=39%  Similarity=0.701  Sum_probs=187.4

Q ss_pred             eeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeee
Q psy3170         191 MIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLE  270 (525)
Q Consensus       191 ~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (525)
                      ||+||.++..++|||+|.++...                                                         
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~---------------------------------------------------------   23 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRG---------------------------------------------------------   23 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcC---------------------------------------------------------
Confidence            57899999999999999997532                                                         


Q ss_pred             cCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         271 EGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       271 ~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                             ..+.|+||||++++|||||||+.......+.|++|.. ............|..+++||.|+.  ....+||||
T Consensus        24 -------~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~-~~~~~~~~~~~~v~~~~~~p~~~~--~~~~~DiAl   93 (229)
T smart00020       24 -------GRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSH-DLSSGEEGQVIKVSKVIIHPNYNP--STYDNDIAL   93 (229)
T ss_pred             -------CCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcc-cCCCCCCceEEeeEEEEECCCCCC--CCCcCCEEE
Confidence                   2588999999999999999999875446788999877 332222224455999999999987  677799999


Q ss_pred             EEECCCcccCCCccceecCCC--CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRA--HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCA  425 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca  425 (525)
                      |+|++|+.+++.++|+||+..  ....+..+.++|||............++...+.+++...|...+..   +...++|+
T Consensus        94 l~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~C~  173 (229)
T smart00020       94 LKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCA  173 (229)
T ss_pred             EEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhhhhhccccccCCCcEee
Confidence            999999999999999999986  4466789999999987653334567888999999999999987653   67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhh
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI  484 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI  484 (525)
                      +......+.|.|||||||++..+   +|+|+||+|++..|...+.|.+|++|++|.+||
T Consensus       174 ~~~~~~~~~c~gdsG~pl~~~~~---~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      174 GGLEGGKDACQGDSGGPLVCNDG---RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             cCCCCCCcccCCCCCCeeEEECC---CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            87544678999999999998643   789999999999998677899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.3e-34  Score=271.77  Aligned_cols=216  Identities=37%  Similarity=0.718  Sum_probs=180.2

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |.||..+..++|||+|.+....                                                          
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~----------------------------------------------------------   22 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSN----------------------------------------------------------   22 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCeEEEEeeCC----------------------------------------------------------
Confidence            6799999999999999997643                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+|+||+++||||||||+..  ...+.+++|.. ........ ....|.+++.||.|+.  ....+||||
T Consensus        23 ------~~~~C~G~li~~~~vLTaahC~~~--~~~~~v~~g~~-~~~~~~~~~~~~~v~~~~~h~~~~~--~~~~~DiAl   91 (220)
T PF00089_consen   23 ------GRFFCTGTLISPRWVLTAAHCVDG--ASDIKVRLGTY-SIRNSDGSEQTIKVSKIIIHPKYDP--STYDNDIAL   91 (220)
T ss_dssp             ------TEEEEEEEEEETTEEEEEGGGHTS--GGSEEEEESES-BTTSTTTTSEEEEEEEEEEETTSBT--TTTTTSEEE
T ss_pred             ------CCeeEeEEeccccccccccccccc--ccccccccccc-ccccccccccccccccccccccccc--ccccccccc
Confidence                  168999999999999999999976  45688888873 33333332 3445999999999998  556799999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEe
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATV  427 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~  427 (525)
                      |+|++++.+.+.++|+||+....  ..+..+.+.||+......  ....++...+.+++.+.|...+.. +...++|+..
T Consensus        92 l~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~c~~~  169 (220)
T PF00089_consen   92 LKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG--YSSNLQSVTVPVVSRKTCRSSYNDNLTPNMICAGS  169 (220)
T ss_dssp             EEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS--BTSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999998433  567899999999865433  456788899999999999986433 6788999987


Q ss_pred             CCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhh
Q psy3170         428 MAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI  484 (525)
Q Consensus       428 ~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI  484 (525)
                      . ...+.|.|||||||++..    . +|+||++++.+|...+.|.+|++|+.|++||
T Consensus       170 ~-~~~~~~~g~sG~pl~~~~----~-~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  170 S-GSGDACQGDSGGPLICNN----N-YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             T-SSSBGGTTTTTSEEEETT----E-EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             c-ccccccccccccccccce----e-eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence            5 567899999999998842    2 7999999999999777899999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.8e-30  Score=238.11  Aligned_cols=240  Identities=27%  Similarity=0.366  Sum_probs=174.7

Q ss_pred             CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceee
Q psy3170         189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF  268 (525)
Q Consensus       189 ~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (525)
                      .+||+||..|+.++||++|++.....+.                                                    
T Consensus        30 s~rIigGs~Anag~~P~~VaLv~~isd~----------------------------------------------------   57 (413)
T COG5640          30 SSRIIGGSNANAGEYPSLVALVDRISDY----------------------------------------------------   57 (413)
T ss_pred             ceeEecCcccccccCchHHHHHhhcccc----------------------------------------------------
Confidence            5799999999999999999996543210                                                    


Q ss_pred             eecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccce
Q psy3170         269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI  348 (525)
Q Consensus       269 ~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DI  348 (525)
                              -.-.+|+|+++..|||||||||+.....-...+..+.. ++......+...|..++.|..|.+  .++.||+
T Consensus        58 --------~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~-~l~d~Sq~~rg~vr~i~~~efY~~--~n~~ND~  126 (413)
T COG5640          58 --------VSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVV-DLNDSSQAERGHVRTIYVHEFYSP--GNLGNDI  126 (413)
T ss_pred             --------cceeEeccceecceEEeeehhhccCCCCccccceEEEe-cccccccccCcceEEEeeeccccc--ccccCcc
Confidence                    02478999999999999999999875423333444444 555556666667999999999998  7889999


Q ss_pred             EEEEECCCcccCC-CccceecCCC---CCCCCCcEEEEEeeeccCCCCc----ccccceEEEEEeeChhhhhcccCC---
Q psy3170         349 ALLKIAPPVEFSE-TLKPACLNRA---HNVKSPTAIASGFGKLNYFDTK----ESLRLMKVVLDIINNDTCSKQETT---  417 (525)
Q Consensus       349 All~L~~~~~~~~-~v~picL~~~---~~~~~~~~~~~Gwg~~~~~~~~----~~~~l~~~~v~~~~~~~C~~~~~~---  417 (525)
                      |+++|.++..... .+.-.--+..   ...........+|+.+.....+    ....+++..+..++...|.+.+..   
T Consensus       127 Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~e~~v~fv~~stc~~~~g~an~  206 (413)
T COG5640         127 AVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANA  206 (413)
T ss_pred             eeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCccceeeeeeeeeechHHhhhhcccccc
Confidence            9999998765321 1111000110   0012234456677766543321    124688999999999999987741   


Q ss_pred             ----CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         418 ----LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       418 ----~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                          ..-.-+|++.+  .+++|+||||||++...++  ...++||+|||.+ |+.+..|.|||+|+.|.+||..++..-.
T Consensus       207 ~dg~~~lT~~cag~~--~~daCqGDSGGPi~~~g~~--G~vQ~GVvSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~~~l~  282 (413)
T COG5640         207 SDGATGLTGFCAGRP--PKDACQGDSGGPIFHKGEE--GRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTNGLS  282 (413)
T ss_pred             CCCCCCccceecCCC--CcccccCCCCCceEEeCCC--ccEEEeEEEecCCCCCCCCcceeEEehhHHHHHHHHHhcCCC
Confidence                11223999865  4899999999999987665  6789999999976 9999999999999999999999886544


Q ss_pred             cCC
Q psy3170         493 FPN  495 (525)
Q Consensus       493 ~~~  495 (525)
                      ++.
T Consensus       283 ~~~  285 (413)
T COG5640         283 YLQ  285 (413)
T ss_pred             ccc
Confidence            443

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=99.76  E-value=7.5e-18  Score=159.10  Aligned_cols=170  Identities=25%  Similarity=0.356  Sum_probs=122.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.|++|..+........+.+.|.++++||+|+..  ...||||||||++|+.++++++|||||.
T Consensus        36 ~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~DiAll~L~~~~~~~~~v~picl~~  113 (232)
T cd00190          36 WVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNYNPS--TYDNDIALLKLKRPVTLSDNVRPICLPS  113 (232)
T ss_pred             EEEECHHhcCCCCCccEEEEeCcccccCCCCceEEEEEEEEEECCCCCCC--CCcCCEEEEEECCcccCCCcccceECCC
Confidence            58999999977545678999998877554445678899999999999875  5689999999999999999999999997


Q ss_pred             C--CCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 A--HNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~--~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      .  ....+..+.++|||.+....  ..+..++...+.+.+...|...+..  .......++|.+...   .....|..++
T Consensus       114 ~~~~~~~~~~~~~~G~g~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~C~~~~~---~~~~~c~gds  186 (232)
T cd00190         114 SGYNLPAGTTCTVSGWGRTSEGG--PLPDVLQEVNVPIVSNAECKRAYSY--GGTITDNMLCAGGLE---GGKDACQGDS  186 (232)
T ss_pred             ccccCCCCCEEEEEeCCcCCCCC--CCCceeeEEEeeeECHHHhhhhccC--cccCCCceEeeCCCC---CCCccccCCC
Confidence            7  45667889999999876542  3556788888888888888765542  112344566665432   1234566554


Q ss_pred             hhcccCCcccc----cccccceeEeecccc
Q psy3170         160 KIQDESPIALA----PALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~----~~~~g~v~~~~~~Cg  185 (525)
                          ++|+...    ..++|.+++... |+
T Consensus       187 ----Ggpl~~~~~~~~~lvGI~s~g~~-c~  211 (232)
T cd00190         187 ----GGPLVCNDNGRGVLVGIVSWGSG-CA  211 (232)
T ss_pred             ----CCcEEEEeCCEEEEEEEEehhhc-cC
Confidence                5555544    334555555433 75

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=99.72  E-value=6.2e-17  Score=155.51  Aligned_cols=172  Identities=24%  Similarity=0.327  Sum_probs=125.2

Q ss_pred             eeeeccCcccC-CCCCeEEEEceeecccC-CcC--cceEEEEEEEECCCCCCCCCCCc-CceEEEEeCCCccCCCceeee
Q psy3170           3 NNHAAHCITSP-LGKPRYVRFGLITKLSY-SVT--DNIHRVMQNILHPNYTTEGTSQY-HDIALLKIAPPVEFSETLKPA   77 (525)
Q Consensus         3 ~lTAAHC~~~~-~~~~~~v~~G~~~~~~~-~~~--~~~~~v~~i~~hp~y~~~~~~~~-nDIALl~L~~~v~~~~~v~pi   77 (525)
                      +||||||+... .. .+.|++|.++.... ...  .....|.++++||+|+..  ... ||||||+|++++.|+++|+||
T Consensus        50 vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~~~v~~~i~H~~y~~~--~~~~nDiall~l~~~v~~~~~i~pi  126 (256)
T KOG3627|consen   50 VLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLVGDVEKIIVHPNYNPR--TLENNDIALLRLSEPVTFSSHIQPI  126 (256)
T ss_pred             EEEChhhCCCCCCc-ceEEEECccccccccccCchhhhceeeEEEECCCCCCC--CCCCCCEEEEEECCCcccCCccccc
Confidence            79999999774 22 78899998755433 222  245668889999999875  445 999999999999999999999


Q ss_pred             ecCCCC----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchh
Q psy3170          78 CLNRAH----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPH  153 (525)
Q Consensus        78 cL~~~~----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  153 (525)
                      |||...    ...+..|.++|||.+.... ...+..++.+.+.+.+...|...+....  ..+..++|++...   ....
T Consensus       127 clp~~~~~~~~~~~~~~~v~GWG~~~~~~-~~~~~~L~~~~v~i~~~~~C~~~~~~~~--~~~~~~~Ca~~~~---~~~~  200 (256)
T KOG3627|consen  127 CLPSSADPYFPPGGTTCLVSGWGRTESGG-GPLPDTLQEVDVPIISNSECRRAYGGLG--TITDTMLCAGGPE---GGKD  200 (256)
T ss_pred             CCCCCcccCCCCCCCEEEEEeCCCcCCCC-CCCCceeEEEEEeEcChhHhcccccCcc--ccCCCEEeeCccC---CCCc
Confidence            998543    2334789999999987652 2456778888999999888988765421  2334578887531   1234


Q ss_pred             hhchhhhhcccCCcccc----cccccceeEeeccccCC
Q psy3170         154 QCTQYSKIQDESPIALA----PALVGGVRYVRTQCDIL  187 (525)
Q Consensus       154 ~C~~~~~~~~~~~l~~~----~~~~g~v~~~~~~Cg~~  187 (525)
                      .|++++    ++|+.+.    ..++|.+++....|+..
T Consensus       201 ~C~GDS----GGPLv~~~~~~~~~~GivS~G~~~C~~~  234 (256)
T KOG3627|consen  201 ACQGDS----GGPLVCEDNGRWVLVGIVSWGSGGCGQP  234 (256)
T ss_pred             cccCCC----CCeEEEeeCCcEEEEEEEEecCCCCCCC
Confidence            688776    6788776    35678888876668754

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.68  E-value=5.3e-16  Score=146.31  Aligned_cols=170  Identities=25%  Similarity=0.367  Sum_probs=119.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      +|||||||+.......+.|++|.++..... ..+.+.|..++.||+|+..  ...+|||||+|++|+.++++++|+||+.
T Consensus        37 ~VLTaahC~~~~~~~~~~v~~g~~~~~~~~-~~~~~~v~~~~~~p~~~~~--~~~~DiAll~L~~~i~~~~~~~pi~l~~  113 (229)
T smart00020       37 WVLTAAHCVYGSDPSNIRVRLGSHDLSSGE-EGQVIKVSKVIIHPNYNPS--TYDNDIALLKLKSPVTLSDNVRPICLPS  113 (229)
T ss_pred             EEEECHHHcCCCCCcceEEEeCcccCCCCC-CceEEeeEEEEECCCCCCC--CCcCCEEEEEECcccCCCCceeeccCCC
Confidence            589999999875456799999987654322 2377899999999999864  6689999999999999999999999997


Q ss_pred             C--CCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 A--HNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~--~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      .  ....+..+.++|||.... ........++...+.+.+...|...+...  ......++|.+...   .....|..++
T Consensus       114 ~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~--~~~~~~~~C~~~~~---~~~~~c~gds  187 (229)
T smart00020      114 SNYNVPAGTTCTVSGWGRTSE-GAGSLPDTLQEVNVPIVSNATCRRAYSGG--GAITDNMLCAGGLE---GGKDACQGDS  187 (229)
T ss_pred             cccccCCCCEEEEEeCCCCCC-CCCcCCCEeeEEEEEEeCHHHhhhhhccc--cccCCCcEeecCCC---CCCcccCCCC
Confidence            6  455678899999998754 21234556777788888877787644321  12344556665432   1234566554


Q ss_pred             hhcccCCccccc---ccccceeEeecccc
Q psy3170         160 KIQDESPIALAP---ALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~---~~~g~v~~~~~~Cg  185 (525)
                          ++|+....   .++|.+.... .|+
T Consensus       188 ----G~pl~~~~~~~~l~Gi~s~g~-~C~  211 (229)
T smart00020      188 ----GGPLVCNDGRWVLVGIVSWGS-GCA  211 (229)
T ss_pred             ----CCeeEEECCCEEEEEEEEECC-CCC
Confidence                45555444   4566556654 775

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.62  E-value=1.7e-14  Score=140.34  Aligned_cols=240  Identities=21%  Similarity=0.362  Sum_probs=139.8

Q ss_pred             eccccCCC---CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchh
Q psy3170         181 RTQCDILA---MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRT  257 (525)
Q Consensus       181 ~~~Cg~~~---~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~  257 (525)
                      ...||...   ..++.+|..+...+.||.+.+......    ....+++||+||+||+||++||+......         
T Consensus        28 l~~CG~~~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~----~~~~~~~gtlIS~RHiLtss~~~~~~~~~---------   94 (282)
T PF03761_consen   28 LETCGKKKLPYPSKVFNGTPAESGEAPWAVSVYTKNHN----EGNYFSTGTLISPRHILTSSHCVMNDKSK---------   94 (282)
T ss_pred             HHhcCCCCCCCcccccCCcccccCCCCCEEEEEeccCc----ccceecceEEeccCeEEEeeeEEEecccc---------
Confidence            35798443   345789999999999999999876532    24456699999999999999998542111         


Q ss_pred             heeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCC
Q psy3170         258 LLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY  337 (525)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y  337 (525)
                                |++   ........|.+-.  .+++|. .+-+     +.+.+   ...............+.++++--..
T Consensus        95 ----------W~~---~~~~~~~~C~~~~--~~l~vP-~~~l-----~~~~v---~~~~~~~~~~~~~~~v~ka~il~~C  150 (282)
T PF03761_consen   95 ----------WLN---GEEFDNKKCEGNN--NHLIVP-EEVL-----SKIDV---RCCNCFSNGKCFSIKVKKAYILNGC  150 (282)
T ss_pred             ----------ccc---CcccccceeeCCC--ceEEeC-HHHh-----ccEEE---EeecccccCCcccceeEEEEEEecC
Confidence                      100   0111234566520  011111 1111     11222   1101111111122335555553222


Q ss_pred             --CCCCCCcccceEEEEECCCcccCCCccceecCCCCCC--CCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhc
Q psy3170         338 --TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK  413 (525)
Q Consensus       338 --~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~~--~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~  413 (525)
                        ........++++||+|+++  ++....|+||+.....  .+....+.|+        .....+....+.+.....   
T Consensus       151 ~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~~~~~~~~~~~~yg~--------~~~~~~~~~~~~i~~~~~---  217 (282)
T PF03761_consen  151 KKIKKNFNRPYSPMILELEED--FSKNVSPPCLADSSTNWEKGDEVDVYGF--------NSTGKLKHRKLKITNCTK---  217 (282)
T ss_pred             CCcccccccccceEEEEEccc--ccccCCCEEeCCCccccccCceEEEeec--------CCCCeEEEEEEEEEEeec---
Confidence              1111344579999999999  6788999999987653  3455556666        122234444455443212   


Q ss_pred             ccCCCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhh
Q psy3170         414 QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWI  484 (525)
Q Consensus       414 ~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI  484 (525)
                                |..........|.||+||||+...++  +++|+||.+.+. .|.  .....|.+|..|.+=|
T Consensus       218 ----------~~~~~~~~~~~~~~d~Gg~lv~~~~g--r~tlIGv~~~~~~~~~--~~~~~f~~v~~~~~~I  275 (282)
T PF03761_consen  218 ----------CAYSICTKQYSCKGDRGGPLVKNING--RWTLIGVGASGNYECN--KNNSYFFNVSWYQDEI  275 (282)
T ss_pred             ----------cceeEecccccCCCCccCeEEEEECC--CEEEEEEEccCCCccc--ccccEEEEHHHhhhhh
Confidence                      22222234578999999999988776  899999998774 343  2267788888776644

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.58  E-value=1.3e-14  Score=135.76  Aligned_cols=165  Identities=26%  Similarity=0.406  Sum_probs=117.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.+++|...........+.+.|++++.||+|+..  ...+|||||+|++++.+.+.++|+||+.
T Consensus        36 ~vLTaahC~~~--~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h~~~~~~--~~~~DiAll~L~~~~~~~~~~~~~~l~~  111 (220)
T PF00089_consen   36 WVLTAAHCVDG--ASDIKVRLGTYSIRNSDGSEQTIKVSKIIIHPKYDPS--TYDNDIALLKLDRPITFGDNIQPICLPS  111 (220)
T ss_dssp             EEEEEGGGHTS--GGSEEEEESESBTTSTTTTSEEEEEEEEEEETTSBTT--TTTTSEEEEEESSSSEHBSSBEESBBTS
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            58999999976  3578899998555444444678999999999999875  4579999999999999999999999997


Q ss_pred             CC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ..  ...+..+.+.|||.....+   ....++...+.+.+...|...+..    .....++|.+..    .....|..++
T Consensus       112 ~~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~c~~~~----~~~~~~~g~s  180 (220)
T PF00089_consen  112 AGSDPNVGTSCIVVGWGRTSDNG---YSSNLQSVTVPVVSRKTCRSSYND----NLTPNMICAGSS----GSGDACQGDS  180 (220)
T ss_dssp             TTHTTTTTSEEEEEESSBSSTTS---BTSBEEEEEEEEEEHHHHHHHTTT----TSTTTEEEEETT----SSSBGGTTTT
T ss_pred             ccccccccccccccccccccccc---cccccccccccccccccccccccc----cccccccccccc----cccccccccc
Confidence            43  3567889999999865433   345667777777777677664211    134455665542    1134666554


Q ss_pred             hhcccCCcccccc-cccceeEeeccccC
Q psy3170         160 KIQDESPIALAPA-LVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~-~~g~v~~~~~~Cg~  186 (525)
                          ++|+..... ++|.+... ..|+.
T Consensus       181 ----G~pl~~~~~~lvGI~s~~-~~c~~  203 (220)
T PF00089_consen  181 ----GGPLICNNNYLVGIVSFG-ENCGS  203 (220)
T ss_dssp             ----TSEEEETTEEEEEEEEEE-SSSSB
T ss_pred             ----ccccccceeeecceeeec-CCCCC
Confidence                566666555 66655554 66753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.14  E-value=3.1e-10  Score=101.52  Aligned_cols=99  Identities=17%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCC--CceEEEEEEEeeccc-ccccce-EEEEEEEeCCCCCCCCCCcccceEEEEEC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSY-SVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~v~~g~~~~~~~-~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~  354 (525)
                      .+.|+|+||.++|||++..|+.+...  ....+.+|..-.... ....+| .+|..+..-         ...+++||.|+
T Consensus        27 ~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V---------~~S~v~LLHL~   97 (267)
T PF09342_consen   27 RYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDV---------PESNVLLLHLE   97 (267)
T ss_pred             eEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeec---------cccceeeeeec
Confidence            78999999999999999999977533  456677776622221 222223 235543322         23599999999


Q ss_pred             CCcccCCCccceecCC--CCCCCCCcEEEEEeee
Q psy3170         355 PPVEFSETLKPACLNR--AHNVKSPTAIASGFGK  386 (525)
Q Consensus       355 ~~~~~~~~v~picL~~--~~~~~~~~~~~~Gwg~  386 (525)
                      +|+.|+.+|+|..||.  .+......|..+|-..
T Consensus        98 ~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen   98 QPANFTRYVLPTFLPETSNENESDDECVAVGHDD  131 (267)
T ss_pred             CcccceeeecccccccccCCCCCCCceEEEEccc
Confidence            9999999999999997  3345556888888643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.3e-09  Score=102.81  Aligned_cols=172  Identities=17%  Similarity=0.150  Sum_probs=106.2

Q ss_pred             eeeeccCcccCCC---CCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           3 NNHAAHCITSPLG---KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         3 ~lTAAHC~~~~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      |||||||+....+   ....|.++..+.    ...+...|..++.|..|.+.  ++.||||+++|.++...- .+. +-+
T Consensus        73 vLTAAHC~~~~s~is~d~~~vv~~l~d~----Sq~~rg~vr~i~~~efY~~~--n~~ND~Av~~l~~~a~~p-r~k-i~~  144 (413)
T COG5640          73 VLTAAHCADASSPISSDVNRVVVDLNDS----SQAERGHVRTIYVHEFYSPG--NLGNDIAVLELARAASLP-RVK-ITS  144 (413)
T ss_pred             EeeehhhccCCCCccccceEEEeccccc----ccccCcceEEEeeecccccc--cccCcceeeccccccccc-hhh-eee
Confidence            7999999977543   334455554332    34456789999999999876  789999999999976531 111 111


Q ss_pred             C--CC----CCCCCCCEEEEeccccccCCcccc-c--ccceeeeeeecCccccccccccccccccc----cceeeccCCc
Q psy3170          80 N--RA----HNVKSPTAIASGFGKLNYFECTQY-S--KIQDESPIALAPALVGGVRYVKTQCDILA----MPMIIGGSRA  146 (525)
Q Consensus        80 ~--~~----~~~~~~~~~v~GWG~~~~~~~~~~-~--~~~~~~~~~~~~~~~c~~~~~~~~~~~~~----~~~~~~~~~~  146 (525)
                      .  ..    .........+.+||.+........ +  ..++++.+.+.+-..|...+..  |....    -..+|.|.. 
T Consensus       145 ~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~e~~v~fv~~stc~~~~g~--an~~dg~~~lT~~cag~~-  221 (413)
T COG5640         145 FDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGC--ANASDGATGLTGFCAGRP-  221 (413)
T ss_pred             ccCcccceecccccccccceeeeeeeecCCCCCCCccceeeeeeeeeechHHhhhhccc--cccCCCCCCccceecCCC-
Confidence            1  11    011223456777776644332222 2  4788888888888777665431  11111    112444432 


Q ss_pred             ccCCchhhhchhhhhcccCCcccc----cccccceeEeeccccCCCCCeee
Q psy3170         147 KYGEFPHQCTQYSKIQDESPIALA----PALVGGVRYVRTQCDILAMPMII  193 (525)
Q Consensus       147 ~~g~~~~~C~~~~~~~~~~~l~~~----~~~~g~v~~~~~~Cg~~~~~~i~  193 (525)
                          ..+.|++++    ++|+...    +.+.|.++|....||.+..+.|+
T Consensus       222 ----~~daCqGDS----GGPi~~~g~~G~vQ~GVvSwG~~~Cg~t~~~gVy  264 (413)
T COG5640         222 ----PKDACQGDS----GGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVY  264 (413)
T ss_pred             ----CcccccCCC----CCceEEeCCCccEEEeEEEecCCCCCCCCcceeE
Confidence                267898887    5666433    45789999999999877666543

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=98.90  E-value=1e-08  Score=94.52  Aligned_cols=182  Identities=16%  Similarity=0.157  Sum_probs=92.9

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCc-eEEEEEEEeecccccccceEEEEEE--EeCCC-CCCCCCCcccceEEEEEC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKP-RYVRFGLITKLSYSVTDNIHRVMQN--ILHPN-YTTEGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~-~~v~~g~~~~~~~~~~~~~~~v~~i--~~hp~-y~~~~~~~~~DIAll~L~  354 (525)
                      +.-|+++||+++.||||+||+....... ....+-..   ....+.....+..+  .+.|. +.. ......|+..+.|+
T Consensus        63 ~~~~~~~lI~pntvLTa~Hc~~s~~~G~~~~~~~p~g---~~~~~~~~~~~~~~~~~~~~g~~~~-~d~~~~~v~~~~~~  138 (251)
T COG3591          63 RLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPG---VNSDGGPFYGITKIEIRVYPGELYK-EDGASYDVGEAALE  138 (251)
T ss_pred             cceeeEEEEcCceEEEeeeEEecCCCChhhhhhcCCc---ccCCCCCCCceeeEEEEecCCceec-cCCceeeccHHHhc
Confidence            4568889999999999999998753221 11111101   11111111112222  22343 222 14455677777777


Q ss_pred             CCcccCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcC
Q psy3170         355 PPVEFSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKD  433 (525)
Q Consensus       355 ~~~~~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~  433 (525)
                      ....+.+......++.... ..+....+.||-.....      .++.-       +.|.+... + ...+-    .-..+
T Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~d~i~v~GYP~dk~~------~~~~~-------e~t~~v~~-~-~~~~l----~y~~d  199 (251)
T COG3591         139 SGINIGDVVNYLKRNTASEAKANDRITVIGYPGDKPN------IGTMW-------ESTGKVNS-I-KGNKL----FYDAD  199 (251)
T ss_pred             cCCCccccccccccccccccccCceeEEEeccCCCCc------ceeEe-------eecceeEE-E-ecceE----EEEec
Confidence            4454455444333433322 34445788888543321      11110       11111100 0 11111    12458


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcC-Cchhhhcccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTV  488 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~-~~~~WI~~~i  488 (525)
                      ++.|+||+|++...     .+++||.+-+..-.........+++. .+++||++.+
T Consensus       200 T~pG~SGSpv~~~~-----~~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~  250 (251)
T COG3591         200 TLPGSSGSPVLISK-----DEVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNI  250 (251)
T ss_pred             ccCCCCCCceEecC-----ceEEEEEecCCCcccccccCcceEecHHHHHHHHHhh
Confidence            99999999998642     27999999885432122333344443 4778888765

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.90  E-value=0.00016  Score=74.63  Aligned_cols=142  Identities=20%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             ceeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         278 VKWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       278 ~~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ....++|.+|+++ +|||++|++.+  ...+.|.+...         .....+-+..+|         ..|||||+++.+
T Consensus        56 ~~~~GSGfii~~~G~IlTn~Hvv~~--~~~i~V~~~~~---------~~~~a~vv~~d~---------~~DlAllkv~~~  115 (428)
T TIGR02037        56 VRGLGSGVIISADGYILTNNHVVDG--ADEITVTLSDG---------REFKAKLVGKDP---------RTDIAVLKIDAK  115 (428)
T ss_pred             ccceeeEEEECCCCEEEEcHHHcCC--CCeEEEEeCCC---------CEEEEEEEEecC---------CCCEEEEEecCC
Confidence            3578999999976 99999999976  34444444211         122222222222         269999999864


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                          ..+.++.|.... ...+..+.+.|+....      ........+.-.....   .........+-     -+...-
T Consensus       116 ----~~~~~~~l~~~~~~~~G~~v~aiG~p~g~------~~~~t~G~vs~~~~~~---~~~~~~~~~i~-----tda~i~  177 (428)
T TIGR02037       116 ----KNLPVIKLGDSDKLRVGDWVLAIGNPFGL------GQTVTSGIVSALGRSG---LGIGDYENFIQ-----TDAAIN  177 (428)
T ss_pred             ----CCceEEEccCCCCCCCCCEEEEEECCCcC------CCcEEEEEEEecccCc---cCCCCccceEE-----ECCCCC
Confidence                245577776543 3678889998985321      1112222222111110   00000011111     122455


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeec
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYG  462 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g  462 (525)
                      .|.|||||+..     ...++||.+..
T Consensus       178 ~GnSGGpl~n~-----~G~viGI~~~~  199 (428)
T TIGR02037       178 PGNSGGPLVNL-----RGEVIGINTAI  199 (428)
T ss_pred             CCCCCCceECC-----CCeEEEEEeEE
Confidence            78999999742     45799998764

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=97.86  E-value=8.2e-05  Score=61.91  Aligned_cols=21  Identities=43%  Similarity=0.705  Sum_probs=19.3

Q ss_pred             eEEEEEeCC-EEEecCCCCCCC
Q psy3170         282 CGGSLISPN-YVMTAAHCITSP  302 (525)
Q Consensus       282 C~GtLIs~~-~VLTAAhCv~~~  302 (525)
                      |+|.+|+++ +|||++||+...
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~~   22 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVEDW   22 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTCC
T ss_pred             CEEEEEcCCceEEEchhheecc
Confidence            789999999 999999999764

...

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.49  E-value=0.0014  Score=65.64  Aligned_cols=140  Identities=17%  Similarity=0.175  Sum_probs=75.5

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ....+|.+|+++ +|||++|.+..  ...+.|.+..         +.....+-+..+|         ..||||||++.+-
T Consensus        77 ~~~GSG~vi~~~G~IlTn~HVV~~--~~~i~V~~~d---------g~~~~a~vv~~d~---------~~DlAvlkv~~~~  136 (351)
T TIGR02038        77 QGLGSGVIMSKEGYILTNYHVIKK--ADQIVVALQD---------GRKFEAELVGSDP---------LTDLAVLKIEGDN  136 (351)
T ss_pred             cceEEEEEEeCCeEEEecccEeCC--CCEEEEEECC---------CCEEEEEEEEecC---------CCCEEEEEecCCC
Confidence            457999999976 99999999965  3344444321         1122222222222         2699999997542


Q ss_pred             ccCCCccceecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                           ..++.+... ....++.+...|+....      ........+.......   ....-....+     .-+....+
T Consensus       137 -----~~~~~l~~s~~~~~G~~V~aiG~P~~~------~~s~t~GiIs~~~r~~---~~~~~~~~~i-----qtda~i~~  197 (351)
T TIGR02038       137 -----LPTIPVNLDRPPHVGDVVLAIGNPYNL------GQTITQGIISATGRNG---LSSVGRQNFI-----QTDAAINA  197 (351)
T ss_pred             -----CceEeccCcCccCCCCEEEEEeCCCCC------CCcEEEEEEEeccCcc---cCCCCcceEE-----EECCccCC
Confidence                 334445332 34678888888885321      1112222222221110   0000001111     11234568


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeec
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYG  462 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g  462 (525)
                      |.|||||+-.     +..++||.+..
T Consensus       198 GnSGGpl~n~-----~G~vIGI~~~~  218 (351)
T TIGR02038       198 GNSGGALINT-----NGELVGINTAS  218 (351)
T ss_pred             CCCcceEECC-----CCeEEEEEeee
Confidence            9999999742     45799998764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.37  E-value=0.0033  Score=62.95  Aligned_cols=139  Identities=17%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ...-+|.+|+++ +|||++|=+.+  ...+.|.+..         +.....+-+..+|         ..||||||++.+ 
T Consensus        77 ~~~GSGfvi~~~G~IlTn~HVv~~--a~~i~V~~~d---------g~~~~a~vv~~d~---------~~DlAvl~v~~~-  135 (353)
T PRK10898         77 RTLGSGVIMDQRGYILTNKHVIND--ADQIIVALQD---------GRVFEALLVGSDS---------LTDLAVLKINAT-  135 (353)
T ss_pred             cceeeEEEEeCCeEEEecccEeCC--CCEEEEEeCC---------CCEEEEEEEEEcC---------CCCEEEEEEcCC-
Confidence            467999999976 99999998865  3444444421         1122222222222         269999999753 


Q ss_pred             ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCC-CCcEEEEeCCCCcCCC
Q psy3170         358 EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTC  435 (525)
Q Consensus       358 ~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~-~~~~Ca~~~~~~~~~C  435 (525)
                          ...++.|.... ...+..+...|+.....      .......+.-..+.    ...... ...+-     .+...-
T Consensus       136 ----~l~~~~l~~~~~~~~G~~V~aiG~P~g~~------~~~t~Giis~~~r~----~~~~~~~~~~iq-----tda~i~  196 (353)
T PRK10898        136 ----NLPVIPINPKRVPHIGDVVLAIGNPYNLG------QTITQGIISATGRI----GLSPTGRQNFLQ-----TDASIN  196 (353)
T ss_pred             ----CCCeeeccCcCcCCCCCEEEEEeCCCCcC------CCcceeEEEecccc----ccCCccccceEE-----eccccC
Confidence                12344443332 35678888888753211      11111222111110    000000 11111     123456


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeec
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYG  462 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g  462 (525)
                      +|.|||||+-.     +..++||.+..
T Consensus       197 ~GnSGGPl~n~-----~G~vvGI~~~~  218 (353)
T PRK10898        197 HGNSGGALVNS-----LGELMGINTLS  218 (353)
T ss_pred             CCCCcceEECC-----CCeEEEEEEEE
Confidence            79999999742     55799998865

>PRK10139 serine endoprotease; Provisional

Probab=97.37  E-value=0.0016  Score=67.38  Aligned_cols=141  Identities=18%  Similarity=0.187  Sum_probs=77.7

Q ss_pred             eeEeEEEEEeC--CEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISP--NYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ....+|.+|++  -+|||.+|.+.+  ...+.|.+...         .....+-+...         ...||||||++.+
T Consensus        89 ~~~GSG~ii~~~~g~IlTn~HVv~~--a~~i~V~~~dg---------~~~~a~vvg~D---------~~~DlAvlkv~~~  148 (455)
T PRK10139         89 EGLGSGVIIDAAKGYVLTNNHVINQ--AQKISIQLNDG---------REFDAKLIGSD---------DQSDIALLQIQNP  148 (455)
T ss_pred             cceEEEEEEECCCCEEEeChHHhCC--CCEEEEEECCC---------CEEEEEEEEEc---------CCCCEEEEEecCC
Confidence            45799999974  699999999976  45556655321         12222222222         2369999999854


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      -    ...++.|.... ...+..+...|+....      ........+.-..+..  ..... ....+-     .+...-
T Consensus       149 ~----~l~~~~lg~s~~~~~G~~V~aiG~P~g~------~~tvt~GivS~~~r~~--~~~~~-~~~~iq-----tda~in  210 (455)
T PRK10139        149 S----KLTQIAIADSDKLRVGDFAVAVGNPFGL------GQTATSGIISALGRSG--LNLEG-LENFIQ-----TDASIN  210 (455)
T ss_pred             C----CCceeEecCccccCCCCEEEEEecCCCC------CCceEEEEEccccccc--cCCCC-cceEEE-----ECCccC
Confidence            2    34466665443 3568888888874211      1112222222111110  00000 011111     123456


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeec
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYG  462 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g  462 (525)
                      +|.|||||+-.     +..++||.+..
T Consensus       211 ~GnSGGpl~n~-----~G~vIGi~~~~  232 (455)
T PRK10139        211 RGNSGGALLNL-----NGELIGINTAI  232 (455)
T ss_pred             CCCCcceEECC-----CCeEEEEEEEE
Confidence            89999999742     45799999864

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.18  E-value=0.0015  Score=59.28  Aligned_cols=86  Identities=17%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             eeeeccCcccCCC--CCeEEEEceee--cccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeee
Q psy3170           3 NNHAAHCITSPLG--KPRYVRFGLIT--KLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC   78 (525)
Q Consensus         3 ~lTAAHC~~~~~~--~~~~v~~G~~~--~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pic   78 (525)
                      +|++-.|+...+.  ..+.+.+|...  +.-..+.+|+++|..+..-|         ..+++||.|++|+.|+.+|+|+.
T Consensus        40 lLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~---------~S~v~LLHL~~~~~fTr~VlP~f  110 (267)
T PF09342_consen   40 LLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP---------ESNVLLLHLEQPANFTRYVLPTF  110 (267)
T ss_pred             EEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeecc---------ccceeeeeecCcccceeeecccc
Confidence            6889999976443  56778898653  22345677888887664332         34999999999999999999999


Q ss_pred             cCC--CCCCCCCCEEEEeccc
Q psy3170          79 LNR--AHNVKSPTAIASGFGK   97 (525)
Q Consensus        79 L~~--~~~~~~~~~~v~GWG~   97 (525)
                      ||.  .+......|...|=-.
T Consensus       111 lp~~~~~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen  111 LPETSNENESDDECVAVGHDD  131 (267)
T ss_pred             cccccCCCCCCCceEEEEccc
Confidence            996  3334455788877543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PRK10942 serine endoprotease; Provisional

Probab=97.14  E-value=0.0048  Score=64.21  Aligned_cols=140  Identities=17%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             eeEeEEEEEeC--CEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISP--NYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ....+|.+|+.  -+|||.+|.+.+  ...+.|.+...         .....+-+..+|         ..||||||++.+
T Consensus       110 ~~~GSG~ii~~~~G~IlTn~HVv~~--a~~i~V~~~dg---------~~~~a~vv~~D~---------~~DlAvlki~~~  169 (473)
T PRK10942        110 MALGSGVIIDADKGYVVTNNHVVDN--ATKIKVQLSDG---------RKFDAKVVGKDP---------RSDIALIQLQNP  169 (473)
T ss_pred             cceEEEEEEECCCCEEEeChhhcCC--CCEEEEEECCC---------CEEEEEEEEecC---------CCCEEEEEecCC
Confidence            46799999985  499999999876  34555554321         112222222222         269999999743


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDT  434 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~  434 (525)
                      -    ...++.|...+ ...+..+...|+....      ........+.-+...    .... -....+-.     +...
T Consensus       170 ~----~l~~~~lg~s~~l~~G~~V~aiG~P~g~------~~tvt~GiVs~~~r~----~~~~~~~~~~iqt-----da~i  230 (473)
T PRK10942        170 K----NLTAIKMADSDALRVGDYTVAIGNPYGL------GETVTSGIVSALGRS----GLNVENYENFIQT-----DAAI  230 (473)
T ss_pred             C----CCceeEecCccccCCCCEEEEEcCCCCC------CcceeEEEEEEeecc----cCCcccccceEEe-----cccc
Confidence            2    23456664433 3567888887763211      111112222211110    0000 00111111     2345


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeec
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYG  462 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g  462 (525)
                      -.|.|||||+..     +..++||.+..
T Consensus       231 ~~GnSGGpL~n~-----~GeviGI~t~~  253 (473)
T PRK10942        231 NRGNSGGALVNL-----NGELIGINTAI  253 (473)
T ss_pred             CCCCCcCccCCC-----CCeEEEEEEEE
Confidence            578999999743     45799998764

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=92.76  E-value=0.21  Score=40.99  Aligned_cols=12  Identities=25%  Similarity=0.061  Sum_probs=10.2

Q ss_pred             ceeeeccCcccC
Q psy3170           2 VNNHAAHCITSP   13 (525)
Q Consensus         2 ~~lTAAHC~~~~   13 (525)
                      .+||||||+...
T Consensus        11 ~ilT~~Hvv~~~   22 (120)
T PF13365_consen   11 YILTAAHVVEDW   22 (120)
T ss_dssp             EEEEEHHHHTCC
T ss_pred             eEEEchhheecc
Confidence            589999999764

...

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.63  E-value=0.22  Score=54.54  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=25.1

Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCC
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG  466 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~  466 (525)
                      .-.||||+||+..+....+|+|+|+++.+....
T Consensus       213 ~~~GDSGSPlF~YD~~~kKWvl~Gv~~~~~~~~  245 (769)
T PF02395_consen  213 GSPGDSGSPLFAYDKEKKKWVLVGVLSGGNGYN  245 (769)
T ss_dssp             --TT-TT-EEEEEETTTTEEEEEEEEEEECCCC
T ss_pred             cccCcCCCceEEEEccCCeEEEEEEEccccccC
Confidence            457999999999988777999999999886553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=88.47  E-value=0.23  Score=48.19  Aligned_cols=9  Identities=22%  Similarity=0.135  Sum_probs=4.2

Q ss_pred             EEEEEeeec
Q psy3170         379 AIASGFGKL  387 (525)
Q Consensus       379 ~~~~Gwg~~  387 (525)
                      .++.|.+..
T Consensus       245 ~tlIGv~~~  253 (282)
T PF03761_consen  245 WTLIGVGAS  253 (282)
T ss_pred             EEEEEEEcc
Confidence            345555543

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=88.31  E-value=2.2  Score=44.19  Aligned_cols=71  Identities=18%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||++|++.+.  ..+.|.+.         .+..+..+-+..+|         ..|+||||++.+    ..+.++.|..
T Consensus        70 ~IlTn~Hvv~~~--~~i~V~~~---------~~~~~~a~vv~~d~---------~~DlAllkv~~~----~~~~~~~l~~  125 (428)
T TIGR02037        70 YILTNNHVVDGA--DEITVTLS---------DGREFKAKLVGKDP---------RTDIAVLKIDAK----KNLPVIKLGD  125 (428)
T ss_pred             EEEEcHHHcCCC--CeEEEEeC---------CCCEEEEEEEEecC---------CCCEEEEEecCC----CCceEEEccC
Confidence            379999999763  44555543         12345555443433         249999999865    3456777754


Q ss_pred             -CCCCCCCCEEEEecc
Q psy3170          82 -AHNVKSPTAIASGFG   96 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG   96 (525)
                       .....|..+.+.|+.
T Consensus       126 ~~~~~~G~~v~aiG~p  141 (428)
T TIGR02037       126 SDKLRVGDWVLAIGNP  141 (428)
T ss_pred             CCCCCCCCEEEEEECC
Confidence             344678888888875

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.81  E-value=3.3  Score=36.77  Aligned_cols=71  Identities=13%  Similarity=0.074  Sum_probs=39.2

Q ss_pred             ceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       278 ~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ..+.|.+..|..+|.|-..|.-     ....+.++..          ...+.+.+..  .+.  .....||++++|.+.-
T Consensus        23 g~~t~l~~gi~~~~~lvp~H~~-----~~~~i~i~g~----------~~~~~d~~~l--v~~--~~~~~Dl~~v~l~~~~   83 (172)
T PF00548_consen   23 GEFTMLALGIYDRYFLVPTHEE-----PEDTIYIDGV----------EYKVDDSVVL--VDR--DGVDTDLTLVKLPRNP   83 (172)
T ss_dssp             EEEEEEEEEEEBTEEEEEGGGG-----GCSEEEETTE----------EEEEEEEEEE--EET--TSSEEEEEEEEEESSS
T ss_pred             ceEEEecceEeeeEEEEECcCC-----CcEEEEECCE----------EEEeeeeEEE--ecC--CCcceeEEEEEccCCc
Confidence            3567888899999999999921     2223333211          1111111111  111  2234699999999888


Q ss_pred             ccCCCcccee
Q psy3170         358 EFSETLKPAC  367 (525)
Q Consensus       358 ~~~~~v~pic  367 (525)
                      .|.+-.+-++
T Consensus        84 kfrDIrk~~~   93 (172)
T PF00548_consen   84 KFRDIRKFFP   93 (172)
T ss_dssp             -B--GGGGSB
T ss_pred             ccCchhhhhc
Confidence            8876666555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification

Probab=85.85  E-value=2.8  Score=38.95  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             EEeCCEEEecCCCCCCCCCCceEEEE--EEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcccCCCc
Q psy3170         286 LISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL  363 (525)
Q Consensus       286 LIs~~~VLTAAhCv~~~~~~~~~v~~--g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~~~~~v  363 (525)
                      +.-..|++|.+|-+.... ..+.++.  |.+ ....        ...+-+||-.       ..||.||+|.++++  +. 
T Consensus        37 igyG~~iItn~HLf~~nn-g~L~i~s~hG~f-~v~n--------t~~lkv~~i~-------~~DiviirmPkDfp--Pf-   96 (235)
T PF00863_consen   37 IGYGSYIITNAHLFKRNN-GELTIKSQHGEF-TVPN--------TTQLKVHPIE-------GRDIVIIRMPKDFP--PF-   96 (235)
T ss_dssp             EEETTEEEEEGGGGSSTT-CEEEEEETTEEE-EECE--------GGGSEEEE-T-------CSSEEEEE--TTS------
T ss_pred             EeECCEEEEChhhhccCC-CeEEEEeCceEE-EcCC--------ccccceEEeC-------CccEEEEeCCcccC--Cc-
Confidence            456889999999986643 2344432  222 1111        1112233322       25999999988764  22 


Q ss_pred             cceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcCCCCCcc
Q psy3170         364 KPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPL  443 (525)
Q Consensus       364 ~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPL  443 (525)
                       |-.+--..+..+..+.++|--......   .....+... +.+ ..         ...|=.    ...++=.||=|.||
T Consensus        97 -~~kl~FR~P~~~e~v~mVg~~fq~k~~---~s~vSesS~-i~p-~~---------~~~fWk----HwIsTk~G~CG~Pl  157 (235)
T PF00863_consen   97 -PQKLKFRAPKEGERVCMVGSNFQEKSI---SSTVSESSW-IYP-EE---------NSHFWK----HWISTKDGDCGLPL  157 (235)
T ss_dssp             --S---B----TT-EEEEEEEECSSCCC---EEEEEEEEE-EEE-ET---------TTTEEE----E-C---TT-TT-EE
T ss_pred             -chhhhccCCCCCCEEEEEEEEEEcCCe---eEEECCceE-Eee-cC---------CCCeeE----EEecCCCCccCCcE
Confidence             222222233445666666764332211   111111111 111 00         111110    01233468889999


Q ss_pred             eeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCC-chhhhcc
Q psy3170         444 QTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSY-YVPWIVH  486 (525)
Q Consensus       444 ~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~-~~~WI~~  486 (525)
                      |...+    ..++||.|.+..-.   .-..|+.+.. +.+-+.+
T Consensus       158 Vs~~D----g~IVGiHsl~~~~~---~~N~F~~f~~~f~~~~l~  194 (235)
T PF00863_consen  158 VSTKD----GKIVGIHSLTSNTS---SRNYFTPFPDDFEEFYLE  194 (235)
T ss_dssp             EETTT------EEEEEEEEETTT---SSEEEEE--TTHHHHHCC
T ss_pred             EEcCC----CcEEEEEcCccCCC---CeEEEEcCCHHHHHHHhc
Confidence            98553    47999999874422   3457777654 4444433

; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.51  E-value=1.3  Score=36.47  Aligned_cols=39  Identities=26%  Similarity=0.511  Sum_probs=28.5

Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV  485 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~  485 (525)
                      =+||-||+|.|+.      -++||++.|-     ..-..|++|+.+ .|++
T Consensus        88 ~PGdCGg~L~C~H------GViGi~Tagg-----~g~VaF~dir~~-~~~e  126 (127)
T PF00947_consen   88 EPGDCGGILRCKH------GVIGIVTAGG-----EGHVAFADIRDL-LWLE  126 (127)
T ss_dssp             STT-TCSEEEETT------CEEEEEEEEE-----TTEEEEEECCCG-STTS
T ss_pred             CCCCCCceeEeCC------CeEEEEEeCC-----CceEEEEechhh-heec
Confidence            3799999999842      2899999872     235779999986 4654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

>PRK10139 serine endoprotease; Provisional

Probab=80.34  E-value=6.7  Score=40.82  Aligned_cols=70  Identities=19%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+||.+.+.  ..+.|.+.         ++..+..+-+...|         ..||||||++.+-    ...++.|..
T Consensus       103 ~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vvg~D~---------~~DlAvlkv~~~~----~l~~~~lg~  158 (455)
T PRK10139        103 YVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDD---------QSDIALLQIQNPS----KLTQIAIAD  158 (455)
T ss_pred             EEEeChHHhCCC--CEEEEEEC---------CCCEEEEEEEEEcC---------CCCEEEEEecCCC----CCceeEecC
Confidence            379999999763  45667653         12345555444432         3599999998642    234666653


Q ss_pred             -CCCCCCCCEEEEec
Q psy3170          82 -AHNVKSPTAIASGF   95 (525)
Q Consensus        82 -~~~~~~~~~~v~GW   95 (525)
                       .....|....+.|.
T Consensus       159 s~~~~~G~~V~aiG~  173 (455)
T PRK10139        159 SDKLRVGDFAVAVGN  173 (455)
T ss_pred             ccccCCCCEEEEEec
Confidence             33456777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
2any_A	241	Expression, Crystallization And The Three-Dimension		4e-27
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		5e-27
2anw_A	241	Expression, Crystallization And Three-Dimensional S		2e-26
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		3e-26
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		3e-26
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		6e-26
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		6e-26
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		6e-26
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		6e-26
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		7e-26
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		9e-26
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		2e-25
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		3e-25
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		4e-25
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		4e-25
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		7e-25
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		1e-24
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		1e-24
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		1e-24
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		2e-24
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		2e-24
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		2e-24
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		2e-24
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-24
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		3e-24
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		3e-24
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		3e-24
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		4e-24
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		4e-24
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		4e-24
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		4e-24
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		4e-24
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		5e-24
2bok_A	241	Factor Xa- Cation Length = 241		5e-24
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		6e-24
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		6e-24
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		7e-24
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		7e-24
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		8e-24
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		9e-24
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		9e-24
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		1e-23
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		1e-23
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		1e-23
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		1e-23
1aut_C	250	Human Activated Protein C Length = 250		1e-23
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		1e-23
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		1e-23
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		1e-23
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		2e-23
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		2e-23
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		2e-23
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		2e-23
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		2e-23
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		2e-23
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		3e-23
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		3e-23
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		3e-23
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		3e-23
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		3e-23
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		4e-23
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		4e-23
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		5e-23
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		6e-23
1pfx_C	235	Porcine Factor Ixa Length = 235		7e-23
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		8e-23
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		1e-22
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		1e-22
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		1e-22
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		1e-22
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		1e-22
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		2e-22
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		2e-22
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		3e-22
2a31_A	223	Trypsin In Complex With Borate Length = 223		3e-22
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		4e-22
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		4e-22
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		4e-22
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		4e-22
1kig_H	241	Bovine Factor Xa Length = 241		5e-22
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		5e-22
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		7e-22
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		7e-22
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		8e-22
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		9e-22
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		9e-22
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		1e-21
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		1e-21
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		1e-21
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		1e-21
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		1e-21
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		1e-21
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		1e-21
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		1e-21
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		1e-21
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		2e-21
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		2e-21
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-21
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		2e-21
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		3e-21
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		3e-21
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		3e-21
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		4e-21
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		5e-21
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		5e-21
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		5e-21
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		6e-21
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		6e-21
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		8e-21
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		8e-21
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		9e-21
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		9e-21
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		9e-21
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		1e-20
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		1e-20
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		1e-20
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		1e-20
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		1e-20
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		1e-20
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-20
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-20
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		2e-20
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		2e-20
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		2e-20
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-20
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		2e-20
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		2e-20
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		2e-20
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		2e-20
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-20
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-20
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		3e-20
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		3e-20
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		3e-20
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		3e-20
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		4e-20
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		4e-20
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-20
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		5e-20
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		5e-20
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		6e-20
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		6e-20
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		6e-20
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		7e-20
1lto_A	245	Human Alpha1-Tryptase Length = 245		7e-20
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		7e-20
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		8e-20
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		8e-20
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		9e-20
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		1e-19
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		2e-19
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		3e-19
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		3e-19
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		3e-19
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		3e-19
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		3e-19
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		3e-19
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		4e-19
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		4e-19
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		5e-19
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		5e-19
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		6e-19
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		6e-19
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		8e-19
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		8e-19
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		8e-19
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		9e-19
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		1e-18
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		1e-18
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		1e-18
1dpo_A	223	Structure Of Rat Trypsin Length = 223		1e-18
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		1e-18
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		1e-18
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-18
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		2e-18
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		2e-18
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		2e-18
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		2e-18
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		3e-18
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		3e-18
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		4e-18
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		4e-18
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		4e-18
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		4e-18
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		4e-18
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		4e-18
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		5e-18
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		5e-18
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		5e-18
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		6e-18
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		6e-18
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		7e-18
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		8e-18
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		1e-17
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		1e-17
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		1e-17
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		1e-17
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		2e-17
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		2e-17
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		2e-17
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-17
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		2e-17
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		2e-17
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		3e-17
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		3e-17
1nn6_A	228	Human Pro-Chymase Length = 228		3e-17
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		3e-17
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		3e-17
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		4e-17
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		4e-17
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		4e-17
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		4e-17
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		4e-17
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		4e-17
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		5e-17
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		5e-17
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		6e-17
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		6e-17
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		6e-17
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		6e-17
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		6e-17
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		7e-17
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		7e-17
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		7e-17
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		7e-17
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		7e-17
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		7e-17
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		7e-17
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		7e-17
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		7e-17
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		8e-17
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		8e-17
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		8e-17
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		9e-17
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		9e-17
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		1e-16
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		1e-16
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		1e-16
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		1e-16
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		1e-16
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		1e-16
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		1e-16
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		1e-16
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		1e-16
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		1e-16
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		1e-16
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		1e-16
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		1e-16
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		1e-16
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		1e-16
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		2e-16
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-16
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		2e-16
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		2e-16
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		3e-16
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		3e-16
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		4e-16
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		4e-16
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		5e-16
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		5e-16
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		6e-16
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		6e-16
3fzz_A	227	Structure Of Grc Length = 227		6e-16
4gso_A	232	Structure Of Jararacussin-I Length = 232		7e-16
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		8e-16
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		1e-15
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		1e-15
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		2e-15
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		2e-15
2xrc_A	565	Human Complement Factor I Length = 565		3e-15
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		5e-15
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		5e-15
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		6e-15
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		7e-15
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		7e-15
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		8e-15
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		8e-15
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		8e-15
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		8e-15
1elt_A	236	Structure Of Native Pancreatic Elastase From North		2e-14
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		3e-14
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		4e-14
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		4e-14
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		4e-14
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		4e-14
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		5e-14
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		7e-14
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		8e-14
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		1e-13
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		1e-13
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		1e-13
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		1e-13
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		2e-13
2rdl_A	226	Hamster Chymase 2 Length = 226		3e-13
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		4e-13
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		4e-13
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		7e-13
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		7e-13
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		1e-12
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		1e-12
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		3e-12
1kyn_B	235	Cathepsin-G Length = 235		3e-12
1au8_A	224	Human Cathepsin G Length = 224		4e-12
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		4e-12
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		6e-12
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		9e-12
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		1e-11
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		3e-11
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		5e-11
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		6e-11
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		8e-11
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		8e-11
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		9e-11
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		9e-11
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		2e-10
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		6e-10
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		1e-08
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		1e-08
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		3e-08
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		6e-08
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		8e-08
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		8e-08
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		8e-08
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		8e-07
3h7t_A	235	Crystal Structure Of Scabies Mite Inactivated Prote		1e-06
1dle_A	298	Factor B Serine Protease Domain Length = 298		1e-06
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		2e-06
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		2e-06
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		2e-06
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		2e-06
2ok5_A	752	Human Complement Factor B Length = 752		3e-06
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		3e-06
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		3e-06
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		4e-06
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		4e-06
3h7o_A	228	Crystal Structure Of Scabies Mite Inactivated Prote		9e-06
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		9e-06
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		1e-05
1aks_A	125	Crystal Structure Of The First Active Autolysate Fo		1e-05
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		5e-05
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		9e-04
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		9e-04

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITS-PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-T 338
            CGGSLI   +V+TAAHC    PL     +  G++     +      ++ + I+H NY  
Sbjct: 28  LCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKV 87
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYFDTKESL 396
           +EG    HDIAL+K+  P+E++E  KP  L    +  +       +G+G   +   K  +
Sbjct: 88  SEGN---HDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWG---FSKEKGEI 141
Query: 397 R--LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           +  L KV + ++ N+ C K  Q+  +    +CA    GGKD C+GDSGGPL  +     M
Sbjct: 142 QNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPL--VCKHNGM 199
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVH 486
           + ++GITS+G  C     P +YT+V+ Y+ WI+ 
Sbjct: 200 WRLVGITSWGEGCARREQPGVYTKVAEYMDWILE 233

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 43  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 97
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 98  PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 153
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           M+  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y +
Sbjct: 154 MEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 211
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITS-PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-T 338
            CGGSLI   +V+TAAHC    PL     +  G++     +      ++ + I+H NY  
Sbjct: 28  LCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKV 87
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYFDTKESL 396
           +EG    HDIAL+K+  P+ ++E  KP  L    +  +       +G+G   +   K  +
Sbjct: 88  SEGN---HDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWG---FSKEKGEI 141
Query: 397 R--LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           +  L KV + ++ N+ C K  Q+  +    +CA    GGKD C+GDSGGPL  +     M
Sbjct: 142 QNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPL--VCKHNGM 199
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVH 486
           + ++GITS+G  C     P +YT+V+ Y+ WI+ 
Sbjct: 200 WRLVGITSWGEGCARREQPGVYTKVAEYMDWILE 233

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 46  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 100
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 101 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 156
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y +
Sbjct: 157 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 214
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 43  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 97
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 98  PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 153
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y +
Sbjct: 154 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 211
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 45  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 99
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 100 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 155
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGD+GGPL     D   Y +
Sbjct: 156 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 213
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 214 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 242

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 43  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 97
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 98  PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 153
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGD+GGPL     D   Y +
Sbjct: 154 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 211
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 46  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 100
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 101 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 156
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGD+GGPL     D   Y +
Sbjct: 157 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 214
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 44  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 98
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 99  PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 154
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGD+GGPL     D   Y +
Sbjct: 155 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 212
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 213 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 241

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 42  FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 96
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + +         +G+G+     T  +  L
Sbjct: 97  PTRK--DIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQ--GTFGAGLL 152
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y +
Sbjct: 153 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 210
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 211 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 239

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 23/223 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           CGGSL+S  +V++AAHC  S   K  Y V+ G     SYS    +  +   I HP+Y  E
Sbjct: 26  CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLN---YFDTKE 394
           G+    DIALL+++ P+ FS  ++P  L  A N   P  +    +G+G +       T +
Sbjct: 86  GSQG--DIALLQLSRPITFSRYIRPISLPAA-NASFPNGLHCTVTGWGHVAPSVSLLTPK 142
Query: 395 SLRLMKVVLDIINNDTCSK--------QETTLISSQL-CATVMAGGKDTCQGDSGGPLQT 445
            L+ ++V L  I+ +TC+         +E   +   + CA  + GGKD CQGDSGGPL  
Sbjct: 143 PLQQLEVPL--ISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 446 IMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
             P   ++ + GI S+G  CG  N P +YT  S Y  WI   V
Sbjct: 201 --PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LISP +V+TAAHC+      PR   + +I      V  N+   +Q I       E
Sbjct: 587 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 641
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
            T +  DIALLK++ P   ++ + PACL   + V         +G+G+     T  +  L
Sbjct: 642 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 697
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y +
Sbjct: 698 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 755
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+G  C   N P +Y RVS +V WI
Sbjct: 756 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 784

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHP 335
           CG SLISPN++++AAHC     G       ++  F GL  +   S      R ++ I+  
Sbjct: 27  CGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISH 86
Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTK 393
            +  + T  Y DIALL++  P E+S  ++P CL + +H   +  AI  +G+G   Y  T 
Sbjct: 87  PFFNDFTFDY-DIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTG 145
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            +L L K  + +IN  TC       I+ ++ C   ++GG D+CQGDSGGPL ++  D  +
Sbjct: 146 -ALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI 204
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   G+ S+G  C   N P +YTR+  +  WI
Sbjct: 205 FQ-AGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 23/223 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           CGGSL+S  +V++AAHC  S   K  Y V+ G     SYS    +  +   I HP+Y  E
Sbjct: 26  CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLN---YFDTKE 394
           G+    DIALL+++ P+ FS  ++P  L  A     P  +    +G+G +       T +
Sbjct: 86  GSQG--DIALLQLSRPITFSRYIRPISLPAA-QASFPNGLHCTVTGWGHVAPSVSLLTPK 142
Query: 395 SLRLMKVVLDIINNDTCSK--------QETTLISSQL-CATVMAGGKDTCQGDSGGPLQT 445
            L+ ++V L  I+ +TC+         +E   +   + CA  + GGKD CQGDSGGPL  
Sbjct: 143 PLQQLEVPL--ISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 446 IMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
             P   ++ + GI S+G  CG  N P +YT  S Y  WI   V
Sbjct: 201 --PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 23/223 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           CGGSL+S  +V++AAHC  S   K  Y V+ G     SYS    +  +   I HP+Y  E
Sbjct: 26  CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLN---YFDTKE 394
           G+    DIALL+++ P+ FS  ++P  L  A     P  +    +G+G +       T +
Sbjct: 86  GSQG--DIALLQLSRPITFSRYIRPISLPAA-QASFPNGLHCTVTGWGHVAPSVSLLTPK 142
Query: 395 SLRLMKVVLDIINNDTCSK--------QETTLISSQL-CATVMAGGKDTCQGDSGGPLQT 445
            L+ ++V L  I+ +TC+         +E   +   + CA  + GGKD CQGDSGGPL  
Sbjct: 143 PLQQLEVPL--ISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 446 IMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
             P   ++ + GI S+G  CG  N P +YT  S Y  WI   V
Sbjct: 201 --PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score =  112 bits (279), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 50  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 109
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK N  
Sbjct: 110 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 169
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 170 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 229
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 230 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHP 335
           CG SLISPN++++AAHC     G       ++  F GL  +   S      R ++ I+  
Sbjct: 27  CGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISH 86
Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTK 393
            +  + T  Y DIALL++  P E+S  ++P CL + +H   +  AI  +G+G   Y  T 
Sbjct: 87  PFFNDFTFDY-DIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTG 145
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            +L L K  + +I   TC       I+ ++ C   ++GG D+CQGDSGGPL ++  D  +
Sbjct: 146 -ALILQKGEIRVIQQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI 204
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   G+ S+G  C   N P +YTR+  +  WI
Sbjct: 205 FQ-AGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +   +   +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P CL      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 13/222 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G     +    + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
           + GI S+G  C       IYT+V+ ++ WI  ++     P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA 240

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P CL      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P CL      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
           + GI S+G  C       IYT+V+ ++ WI  ++     P + 
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK 241

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P CL      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRALRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHP 335
           CG SLISPN++++AAHC     G       ++  F GL  +   S      R ++ I+  
Sbjct: 27  CGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISH 86
Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTK 393
            +  + T  Y DIALL++  P E+S  ++P  L + +H   +  AI  +G+G   Y  T 
Sbjct: 87  PFFNDFTFDY-DIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTG 145
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            +L L K  + +IN  TC       I+ ++ C   ++GG D+CQGDSGGPL ++  D  +
Sbjct: 146 -ALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI 204
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   G+ S+G  C   N P +YTR+  +  WI
Sbjct: 205 FQ-AGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
           + GI S+G  C       IYT+V+ ++ WI  ++     P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA 240

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
           + GI S+G  C       IYT+V+ ++ WI  ++     P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA 240

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C       IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C       IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C       IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C       IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGEQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
           + GI S+G  C       IYT+V+ ++ WI  ++     P + 
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK 241

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGEQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C       IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 41  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 98
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 99  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 155
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGDSGGP  T   D   Y 
Sbjct: 156 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 213
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C       IYT+V+ ++ WI
Sbjct: 214 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 243

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL      +S      T I SGFG+  +   ++S
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            RL  + +  ++ ++C    + +I+  + CA      +D CQGD+GGP  T   D   Y 
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDAGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
           + GI S+G  C       IYT+V+ ++ WI  ++     P + 
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK 241

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLIS  +V++AAHC  S +     VR G         T+     ++ I+HP+Y + 
Sbjct: 24  FCGGSLISSTWVVSAAHCYKSRI----QVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSR 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL-----NYFDTKES 395
                +DI L+K++ P   +  +    L  +        + SG+G L     NY DT   
Sbjct: 80  NLD--NDIMLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGSSSNYPDT--- 134
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           LR +   L I+++ +C+      I+S + CA  M GGKD+CQGDSGGP+      +C   
Sbjct: 135 LRCLD--LPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPV------VCNGQ 186
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + G+ S+G  C   N P +YT+V  Y  WI  T+
Sbjct: 187 LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTM 220

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 42  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 101
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK N  
Sbjct: 102 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENST 161
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 162 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 221
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 222 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEAST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 23/223 (10%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPN 336
            ++ CGG L+ PN+V+TAAHC         Y  +     L        HR V + I HP 
Sbjct: 22  TQYLCGGVLLDPNWVLTAAHCYDD-----NYKVWLGKNNLFKDEPSAQHRFVSKAIPHPG 76
Query: 337 YTTEGTSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL 387
           +      ++         +D+ LL+++ P + ++T+KP  L         T +ASG+G +
Sbjct: 77  FNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTCLASGWGSI 136
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTI 446
                + +  L  V L ++ N+ C+K     ++ + LCA  M GGKDTC+GDSGGPL   
Sbjct: 137 TPTKFQFTDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPL--- 193
Query: 447 MPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
              +C   + GITS+G   CG  + P +YT+++ +  WI  T+
Sbjct: 194 ---ICDGVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CG  LI P++V+TAAHC+     K   VR G      +   +    + +  +HPNY+   
Sbjct: 27  CGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKST 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKLNYFDTKES 395
           T   +DIALL +A P   S+T+ P CL       R  N      + +G+G  +    KE+
Sbjct: 85  TD--NDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG-YHSSREKEA 141
Query: 396 LRLMKVVLDIIN-----NDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPD 449
            R    VL+ I      ++ CS+  + ++S   LCA ++   +D C+GDSGGP+  +   
Sbjct: 142 KRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPM--VASF 199
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
              + ++G+ S+G  CG  +   +YT+VS Y+ WI   +   + P  S
Sbjct: 200 HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKS 247

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEAST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD---NIHRVMQNIL 333
           D +  CG SL+S +++++AAHC+     +P   +  L   ++ ++T        + Q ++
Sbjct: 21  DDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVI 80
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFD 391
           +P+Y      + +DIA++ +   V +++ ++P CL   + V  P  I S  G+G L Y  
Sbjct: 81  NPHYNKR--RKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQG 138
Query: 392 TKESLRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
           +   + L +  + +++N+ C +Q  E  +  + +CA   AGG D+CQGDSGGPL      
Sbjct: 139 STADV-LQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDSGGPL------ 191
Query: 450 LCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +C  N    + G+TS+G QC   N P +Y RV  +  WI
Sbjct: 192 MCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWI 230

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 19/215 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CG  LI P++V+TAAHC+     K   VR G      +   +    + +  +HPNY+   
Sbjct: 27  CGAVLIHPSWVLTAAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKST 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKLNYFDTKES 395
           T   +DIALL +A P   S+T+ P CL       R  N      + +G+G  +    KE+
Sbjct: 85  TD--NDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG-YHSSREKEA 141
Query: 396 LRLMKVVLDIIN-----NDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPD 449
            R    VL+ I      ++ CS+  + ++S   LCA ++   +D C+GDSGGP+      
Sbjct: 142 KRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHG 201
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
              + ++G+ S+G  CG  +   +YT+VS Y+ WI
Sbjct: 202 --TWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++  CL   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEAST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 415 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 473
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P CL      NV       +G+G     D  ++ 
Sbjct: 474 MAESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 531
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 532 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 588
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 589 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 619

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 11/209 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T E
Sbjct: 26  FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +   DIA+L++  P+ F   + PA L  A        + SG+G            L  
Sbjct: 84  --TYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQC 141
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   +++   C       I+S + C   + GGKD+CQGDSGGP+      +C   + G+ 
Sbjct: 142 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV------VCNGQLQGVV 195
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI +T+
Sbjct: 196 SWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSL+SP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK N  
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +   +   +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P  L      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +   +   +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P  L      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE- 340
           CGG L+ P +V+TAAHCI +       +  G  +      T  + +V  +  HP Y    
Sbjct: 26  CGGVLVHPQWVLTAAHCIRNK----SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSL 81
Query: 341 --------GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
                   G    HD+ LL+++ P E ++ +K   L         T  ASG+G +   + 
Sbjct: 82  LKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEF 141
Query: 393 KESLRLMKVVLDIINNDTCSKQETTLISS-QLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
               +L  V L +I+ND C++     ++   LCA    GGK TC GDSGGPL      +C
Sbjct: 142 LTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPL------VC 195
Query: 452 MYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
              + GITS+G + C     P++YT+V +Y  WI  T+
Sbjct: 196 NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI 233

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P  L      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P  L      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +   +   +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P  L      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++  +++TAAHC+ +  G    V  G         T+    V++ I H NY   
Sbjct: 25  FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
             +  HDIALL++  P+  +  + P C+         +K  +   SG+G++ +   + +L
Sbjct: 83  INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            L  + + +++  TC +  + T+ ++  CA    GG+D+CQGDSGGP  T +       +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G +C       IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGS+I   +++TAAHC    +  P+ +R   G++ +       +   V + I+H  Y 
Sbjct: 28  LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
              +   +DIALLK+   V ++++ +P  L      NV       +G+G     D  ++ 
Sbjct: 87  MAESG--YDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L K  + ++ N+ C K+     +    +CA    GGKD C+GDSGGPL     ++  ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           ++GITS+G  C     P +YT V  YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++  +++TAAHC+ +  G    V  G         T+    V++ I H NY   
Sbjct: 25  FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
                HDIALL++  P+  +  + P C+         +K  +   SG+G++ +   + +L
Sbjct: 83  INKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            L  + + +++  TC +  + T+ ++  CA    GG+D+CQGDSGGP  T +       +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G +C       IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+I+  +V+TAAHCI    G    V  G         T+    V++ I H +Y   
Sbjct: 25  FCGGSIINEKWVVTAAHCIEP--GVKITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNAT 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL-NYFDTKES 395
                HDIALL++  P+  +  + P C+         +K  +   SG+G++ N   +   
Sbjct: 83  VNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATI 142
Query: 396 LRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L+ +KV L  ++  TC +  + T+ S+  CA    GGKD+CQGDSGGP  T +       
Sbjct: 143 LQYLKVPL--VDRATCLRSTKFTIYSNMFCAGFHEGGKDSCQGDSGGPHVTEVEGTSF-- 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G +C       IYT+VS YV WI
Sbjct: 199 LTGIISWGEECAVKGKYGIYTKVSRYVNWI 228

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
           V + CGGSLISP +V++A HC      K  Y+ +   ++L+ +    +   ++N ILH +
Sbjct: 27  VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
           Y+ +  + ++DIALLKI        + S T++   L   +N      +   +GFGK    
Sbjct: 87  YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
           D     +L   V+ +I++  C +     + + +  LCA       D+CQGD+GGPL   +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                  + GI S+GR C   + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++  +++TAAHC+ +  G    V  G         T+    V++ I H N+   
Sbjct: 25  FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
             +  HDIALL++  P+  +  + P C+         +K  +   SG+G++ +   + +L
Sbjct: 83  INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            L  + + +++  TC +  + T+ ++  CA    GG+D+CQGDSGGP  T +       +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G +C       IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
           G +  +DI L+K++ P   +  +    L R+        + SG+G      +     L  
Sbjct: 78  GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   +++N +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++  +++TAAHC+ +  G    V  G         T+    V++ I H N+   
Sbjct: 25  FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
             +  HDIALL++  P+  +  + P C+         +K  +   SG+G++ +   + +L
Sbjct: 83  INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRAAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            L  + + +++  TC +  + T+ ++  CA    GG+D+CQGDSGGP  T +       +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G +C       IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++  +++TAAHC+ +  G    V  G         T+    V++ I H NY   
Sbjct: 25  FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
                HDIALL++  P+  +  + P C+         +K  +   SG+G++ +   + +L
Sbjct: 83  INKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            L  + + +++  TC +  + T+ ++  CA    GG+D+CQGD+GGP  T +       +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDAGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G +C       IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLI---TKLSYSVTDNIHRVMQN------I 332
           CGGSL++  +++TAAHC      K +   + LI    ++ +     +   +Q       I
Sbjct: 32  CGGSLLNSQWLLTAAHCFRI---KKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKII 88
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN--RAHNVKSP-TAIASGFGKLNY 389
           +H  Y+   +S+ +DIAL+KI PPV     + P CL   RA   + P T   +G+G L  
Sbjct: 89  IHEKYSA--SSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQE 146
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTI 446
              + S  L +  +D+I+   C+        + S+ +CA    G  DTCQGDSGGPL   
Sbjct: 147 NARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCK 206
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                 Y ++GITS+G  C  A  P +YT    Y+ WI   +
Sbjct: 207 DSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI-TSPLGKPRYVRFGLITKLSYSV---TDNIHRVMQNILHPN 336
           FCG S+ + NY +TA HC+       P  ++  +  +L  SV   ++ I  V + ILH N
Sbjct: 29  FCGASIYNENYAITAGHCVYGDDYENPSGLQI-VAGELDMSVNEGSEQIITVSKIILHEN 87
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
           +        +DI+LLK++  + F++ + P  L    +  +   I +G+G  +       +
Sbjct: 88  FDYNLLD--NDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDV 145
Query: 397 RLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L KV + +++++ C        ++ S +CA V  GGKD+CQGDSGGPL     D     
Sbjct: 146 -LQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAA--SDTGSTY 202
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G  C     P +YT VSY+V WI
Sbjct: 203 LAGIVSWGYGCARPGYPGVYTEVSYHVDWI 232

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 32  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
           G +  +DI L+K++ P   +  +    L R+        + SG+G      +     L  
Sbjct: 86  GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 145
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++++ +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 146 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 200 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 228

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
           G +  +DI L+K++ P   +  +    L R+        + SG+G      +     L  
Sbjct: 78  GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++++ +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
           G +  +DI L+K++ P   +  +    L R+        + SG+G      +     L  
Sbjct: 78  GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++++ +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
           G +  +DI L+K++ P   +  +    L R+        + SG+G      +     L  
Sbjct: 78  GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++++ +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LKAPVLSDSSCKSAYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCXKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSXPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGXLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
           G +  +DI L+K++ P      +    L R+        + SG+G      +     L  
Sbjct: 78  GNTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++++ +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG++++  YV+TAAHC+     K   VR G          +  H V   + H  +  E
Sbjct: 26  FCGGTILNEFYVLTAAHCLHQ--AKRFTVRVGDRNTEQEEGNEMAHEVEMTVKHSRFVKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-----NRAHNVKSPTAIASGFGKLNYFDTKES 395
             +   DIA+L++  P+ F   + PACL       A  +   T I SGFG+     T E 
Sbjct: 84  --TYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGR-----THEK 136
Query: 396 LRLMKVV--LDI--INNDTCSKQET-TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
            RL   +  L++  ++  TC    + T+  +  CA      +D CQGDSGGP  T   D 
Sbjct: 137 GRLSSTLKMLEVPYVDRSTCKLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHVTRFKD- 195
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
             Y + GI S+G  C       +YT+VS ++ WI
Sbjct: 196 -TYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWI 228

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNY 337
           K+ CGG L+  N+V+TAAHC        +Y V  G    L    +D    V + I HP++
Sbjct: 26  KYQCGGVLLDRNWVLTAAHCYND-----KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDF 80
Query: 338 T----TEGTSQ-----YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN 388
                 E T Q      +D+ LL+++ P + ++ +KP  L         T +ASG+G   
Sbjct: 81  NMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTT 140
Query: 389 YFDTKESLRLMKVVLDIINNDTCSK-QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
               K    L  V L ++ N+ C K  E  +  + LCA  M GG  TC+ DSGGPL    
Sbjct: 141 PIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL---- 196
Query: 448 PDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
             +C   + GITS+G + CG    P++YT++  +  WI  T+
Sbjct: 197 --ICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASVSLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CAGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 16/201 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           +CGGSL++ N V+TAAHC++        +R G +++ S  +T ++  V    +HP+Y+  
Sbjct: 25  WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSYS-- 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
                +D+A+LK++  +     +  A L  + +  V   +A  +G+G  +   +   + L
Sbjct: 80  --GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137
Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           +KV + I++  TC  Q  T+ I++Q+ CA V +GGKD+CQGDSGGP+      L     I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNTL-----I 192
Query: 457 GITSYGRQCGHANTPAIYTRV 477
           G  S+G  C   N   +Y  V
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 16/201 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           +CGGSL++ N V+TAAHC++        +R G +++ S  +T ++  V    +HP+Y+  
Sbjct: 25  WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSYS-- 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
                +D+A+LK++  +     +  A L  + +  V   +A  +G+G  +   +   + L
Sbjct: 80  --GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137
Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           +KV + I++  TC  Q  T+ I++Q+ CA V +GGKD+CQGDSGGP+      L     I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNTL-----I 192
Query: 457 GITSYGRQCGHANTPAIYTRV 477
           G  S+G  C   N   +Y  V
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y      + +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNKR--RKNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 20/223 (8%)
Query: 273 GTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVR--FGLITKLSYSVTDNIHRVMQ 330
           G   D +  CG SL+S +++++AAHC+     +P       GL  K + +    + R++ 
Sbjct: 17  GLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLID 76
Query: 331 NI-LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKL 387
            I ++P+Y      + +DIA++ +   V +++ ++P  L   + V  P    S  G+G +
Sbjct: 77  EIVINPHYNRR--RKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTV 134
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQT 445
            Y  T   + L +  + +++N+ C +Q  E  +  + +CA    GG D+CQGDSGGPL  
Sbjct: 135 VYQGTTADI-LQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPL-- 191
Query: 446 IMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
               +C  N    + G+TS+G +C   N P +Y RVS +  WI
Sbjct: 192 ----MCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWI 230

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 38  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 84
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 85  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 142
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 143 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 196
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 197 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 234

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 30  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 76
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 77  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 134
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 135 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 188
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 189 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 226

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 29  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 75
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 76  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 133
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 134 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 187
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 188 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 225

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 44  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 90
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 91  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 148
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 149 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 202
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 203 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+         +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 101/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI   +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLIDSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y  +  +  +DI L+K+         +    L  +        + SG+G      
Sbjct: 71  IVHPSY--DSNTLNNDIMLIKLKSAASLDSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+ N+V+TAAHC    +     V  G   + S S  + I ++    +  N    
Sbjct: 26  FCGGSLINENWVVTAAHC---GVTTSDVVVAGEFDQGSSS--EKIQKLKIAKVFKNSKYN 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
             +  +DI LLK++    FS+T+   CL  A +      T + +G+G   Y +     RL
Sbjct: 81  SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRL 140
Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +  L +++N  C K   T I  + +CA   A G  +C GDSGGPL  +      + ++G
Sbjct: 141 QQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTLVG 196
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I S+G      +TP +Y RV+  V W+  T+
Sbjct: 197 IVSWGSSTCSTSTPGVYARVTALVNWVQQTL 227

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 44  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 90
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 91  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 148
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGD+GGP+      +
Sbjct: 149 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDAGGPV------V 202
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 203 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I++  +C S     + S+  CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSTSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+ N+V+TAAHC    +     V  G   + S S  + I ++    +  N    
Sbjct: 41  FCGGSLINENWVVTAAHC---GVTTSDVVVAGEFDQGSSS--EKIQKLKIAKVFKNSKYN 95
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
             +  +DI LLK++    FS+T+   CL  A +      T + +G+G   Y +     RL
Sbjct: 96  SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRL 155
Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +  L +++N  C K   T I  + +CA   A G  +C GDSGGPL  +      + ++G
Sbjct: 156 QQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTLVG 211
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I S+G      +TP +Y RV+  V W+  T+
Sbjct: 212 IVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 107/201 (53%), Gaps = 16/201 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           +CGGSL++ N V+TAAHC++        +R G +++ S  +T ++  V    +HP+Y   
Sbjct: 25  WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSY--- 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
            +   +D+A+LK++  +     +  A L  + +  V   +A  +G+G  +   +   + L
Sbjct: 79  -SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137
Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           +KV + I++  TC  Q  T+ I++Q+ CA V +GGKD+CQGD GGP+      L     I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDXGGPIVDSSNTL-----I 192
Query: 457 GITSYGRQCGHANTPAIYTRV 477
           G  S+G  C   N   +Y  V
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           ++D  W  FCGGSLI P +V+TAAHC+   +     +R  L  +  Y   D +  V + I
Sbjct: 20  VRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLY-YQDQLLPVSRII 78
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 390
           +HP +    T    DIALL++  PV  S  +    L  A     P      +G+G +   
Sbjct: 79  VHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV--- 133
Query: 391 DTKESLR----LMKVVLDIINNDTCSKQ---------ETTLI-SSQLCATVMAGGKDTCQ 436
           D  E L     L +V + I+ N  C  +         +  +I    LCA      +D+CQ
Sbjct: 134 DNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQ 191
Query: 437 GDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GDSGGPL      +C  N      G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 192 GDSGGPL------VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 35/238 (14%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPL----GKPRYVRFGLITKLSYSVTDNIHRVM----- 329
           ++ CGGSLI+  Y++TAAHC+   +    G    VR G     +        RV      
Sbjct: 50  QFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKP 109
Query: 330 ------QNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV----KSPTA 379
                 + I HP+Y      +YHDIAL+++   VEF+  ++P CL + +      +  T 
Sbjct: 110 IDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTV 169
Query: 380 IASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK----QETTLISSQLCATVMAGG---K 432
           +  G  +   + T +     K+ + +++ + C+K        + SSQLC    AGG   K
Sbjct: 170 VGWGRTETGQYSTIK----QKLAVPVVHAEQCAKTFGAAGVRVRSSQLC----AGGEKAK 221
Query: 433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           D+C GDSGGPL     +   + + G+ S+G  CG    P IYT+V  Y  WI   + P
Sbjct: 222 DSCGGDSGGPLLAERANQQFF-LEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIRP 278

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + GGKD+CQGD GGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDXGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 16/210 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LI P +V+TAAHC    L     V  G         +     V++ ++HP+Y  +
Sbjct: 25  LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLRQRESSQEQSSVVRAVIHPDY--D 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             S   DI LL++A P + SE ++P  L R  +  + +    G+GK    D  ++++   
Sbjct: 79  AASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAY 138
Query: 401 VVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           + L  ++ + C       I+   LCA     GKD+CQGDSGGPL      +C  ++ G+ 
Sbjct: 139 IHL--VSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 190
Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G   CG    P +YT V  Y  WI  T+
Sbjct: 191 SWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI P +V+TAAHC+   +     +R  L  +  Y   D +  V + I+HP + T 
Sbjct: 28  FCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLY-YQDQLLPVSRIIVHPQFYTA 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR- 397
                 DIALL++  PV+ S  +    L  A     P      +G+G +   D  E L  
Sbjct: 87  QIGA--DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV---DNDERLPP 141
Query: 398 ---LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQ 444
              L +V + I+ N  C  +         +  ++    LCA      +D+CQGDSGGPL 
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPL- 198
Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                +C  N      G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 199 -----VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI P +V+TAAHC+   +     +R  L  +  Y   D +  V + I+HP + T 
Sbjct: 28  FCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLY-YQDQLLPVSRIIVHPQFYTA 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR- 397
                 DIALL++  PV+ S  +    L  A     P      +G+G +   D  E L  
Sbjct: 87  QIGA--DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV---DNDERLPP 141
Query: 398 ---LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQ 444
              L +V + I+ N  C  +         +  ++    LCA      +D+CQGDSGGPL 
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPL- 198
Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                +C  N      G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 199 -----VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI P +V+TAAHC+   +     +R  L  +  Y   D +  V + I+HP + T 
Sbjct: 28  FCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLY-YQDQLLPVSRIIVHPQFYTA 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR- 397
                 DIALL++  PV+ S  +    L  A     P      +G+G +   D  E L  
Sbjct: 87  QIGA--DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV---DNDERLPP 141
Query: 398 ---LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQ 444
              L +V + I+ N  C  +         +  ++    LCA      +D+CQGDSGGPL 
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPL- 198
Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                +C  N      G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 199 -----VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P IYT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTI 220

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P IYT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +S +
Sbjct: 77  SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSDK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNDSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTM 219

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           ++D  W  FCGGSLI P +V+TAAHC+   +     +R  L  +  Y   D +  V + I
Sbjct: 20  VRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLY-YQDQLLPVSRII 78
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 390
           +HP +    T    DIALL++  PV  S  +    L  A     P      +G+G +   
Sbjct: 79  VHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV--- 133
Query: 391 DTKESLR----LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQ 436
           D  E L     L +V + I+ N  C  +         +  +I    LCA      +D+C+
Sbjct: 134 DNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCK 191
Query: 437 GDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GDSGGPL      +C  N      G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 192 GDSGGPL------VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 16/210 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LI P +V+TAAHC    L     V  G         +     V++ ++HP+Y  +
Sbjct: 26  LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLRQQESSQEQSSVVRAVIHPDY--D 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             S   DI LL++A P + SE ++P  L R  + ++ +    G+GK    D  ++++   
Sbjct: 80  AASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGWGKTADGDFPDTIQCAY 139
Query: 401 VVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           + L  ++ + C       I+ + LCA     GKD+CQGDSGGPL      +C  ++ G+ 
Sbjct: 140 IHL--VSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 191
Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G   CG    P +YT V  Y  WI  T+
Sbjct: 192 SWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 221

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 44  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 96
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +S +
Sbjct: 97  SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSNK 153
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 154 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 207
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 208 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 239

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 39  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 91
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +S +
Sbjct: 92  SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSNK 148
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 149 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 202
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 203 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 234

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +S +
Sbjct: 77  SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +S +
Sbjct: 77  SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNT-MSSTADSNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 16/210 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LI P +V+TAAHC    L     V  G         +     V++ ++HP+Y  +
Sbjct: 25  LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLGQQESSQEQSSVVRAVIHPDY--D 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             S   DI LL++A P + SE ++P  L R  + ++ +    G+GK    D  ++++   
Sbjct: 79  AASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGWGKTADGDFPDTIQCAY 138
Query: 401 VVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           + L  ++ + C       I+ + LCA     GKD+CQGDSGGPL      +C  ++ G+ 
Sbjct: 139 IHL--VSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 190
Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G   CG    P +YT V  Y  WI  T+
Sbjct: 191 SWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSL++  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLLNSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P IYT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRVA----VRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +  +
Sbjct: 77  SSYNID--NDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGN-TMSSTADGDK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  E
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRE 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C    + +I+  + C   + GGKD CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 35/220 (15%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TK--ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
           T   + L+ +K    I+++ +C    + +I+S + CA  + GGKD+CQGDSGGP+     
Sbjct: 129 TSYPDVLKCLKA--PILSDSSCKSASSAIITSNMFCAGYLEGGKDSCQGDSGGPV----- 181
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            +C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 182 -VCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGD+GGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI---TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILH-PN 336
            CGGSL+S ++V+TAAHC       L + R     +     + +   +  V+ +  + P 
Sbjct: 25  LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF 84
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKE 394
                    +DIAL+ ++ P+  +E ++P CL  A    V       +G+G   Y+  + 
Sbjct: 85  RDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA 144
Query: 395 SLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMPD 449
            + L +  + II+ND C+  +     +     CA    GG D CQGDSGGP   +  +  
Sbjct: 145 GV-LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISR 203
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              + + GI S+G  C  A  P +YT+VS +  WI   +
Sbjct: 204 TPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 27/222 (12%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTT 339
            CGG L+  N+V+TAAHC        +Y  +    KL        HR V ++  HP +  
Sbjct: 25  ICGGVLLDRNWVLTAAHCYVD-----QYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNM 79
Query: 340 E---------GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYF 390
                     G     D+ LL+++ P + ++ +KP  L           +ASG+G +   
Sbjct: 80  SLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPT 139
Query: 391 DTKESLRLMKVVLDIINNDTCSK---QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
             ++   L  V + ++ N+ C+K   Q+ T +   LCA  M GGKDTC+ DSGGPL    
Sbjct: 140 RWQKPDDLQCVFITLLPNENCAKVYLQKVTDV--MLCAGEMGGGKDTCRDDSGGPL---- 193
Query: 448 PDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
             +C   + G TSYG   CG    PAIYT +  +  WI  T+
Sbjct: 194 --ICDGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI---TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILH-PN 336
            CGGSL+S ++V+TAAHC       L + R     +     + +   +  V+ +  + P 
Sbjct: 142 LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF 201
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKE 394
                    +DIAL+ ++ P+  +E ++P CL  A    V       +G+G   Y+  + 
Sbjct: 202 RDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA 261
Query: 395 SLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMPD 449
            + L +  + II+ND C+  +     +     CA    GG D CQGDSGGP   +  +  
Sbjct: 262 GV-LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISR 320
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              + + GI S+G  C  A  P +YT+VS +  WI   +
Sbjct: 321 TPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI---TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILH-PN 336
            CGGSL+S ++V+TAAHC       L + R     +     + +   +  V+ +  + P 
Sbjct: 142 LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF 201
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKE 394
                    +DIAL+ ++ P+  +E ++P CL  A    V       +G+G   Y+  + 
Sbjct: 202 RDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA 261
Query: 395 SLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMPD 449
            + L +  + II+ND C+  +     +     CA    GG D CQGDSGGP   +  +  
Sbjct: 262 GV-LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISR 320
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              + + GI S+G  C  A  P +YT+VS +  WI   +
Sbjct: 321 TPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGD+GGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 35/220 (15%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TK--ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
           T   + L+ +K    I+++ +C    + +I+S + CA  + GGKD+CQGDSGGP+     
Sbjct: 129 TSYPDVLKCLKA--PILSDSSCKSASSRIITSNMFCAGYLEGGKDSCQGDSGGPV----- 181
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            +C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 182 -VCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSWIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +  +
Sbjct: 77  SSYNID--NDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGN-TMSSTADKNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSYIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHR----------- 327
           FCGGSL+  ++++TAAHC+   L    P      L++   + +    H            
Sbjct: 26  FCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHL 85
Query: 328 -VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
            V    LHP Y  +  +  +D+AL+++      +  + P CL      +    I SG+GK
Sbjct: 86  GVKHTTLHPQY--DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGK 143
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQ----ETTLISSQLCATVMAGGKDTCQGDSGGP 442
              F  +    LM++ + I+++ TC K     +  +    +CA    GGKD C GDSGGP
Sbjct: 144 --QFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP 201
Query: 443 LQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + T+  +   + ++G  S+G  CG  +   +Y+ + +   WI
Sbjct: 202 MVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 243

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGD+GGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP------ 335
           CGG L+   +V+TAAHCI+        +  G         T     V ++  HP      
Sbjct: 26  CGGILVHRQWVLTAAHCISDNY----QLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSL 81
Query: 336 --NYTTEGTSQY-HDIALLKIAPPVE-FSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
             N+T +    Y HD+ LL++  P +  ++ +K   L         T +ASG+G +   +
Sbjct: 82  LENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPEN 141
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISS-QLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
                 L  V L I+ ND C K     ++   LC   + GGKDTC GDSGGPL      +
Sbjct: 142 FSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPL------M 195
Query: 451 CMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + G+TS+G   CG  N P++  RV  YV WI  T+
Sbjct: 196 CDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGD+GGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + CA  + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT++  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTI 220

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLI---TKLSYSVTDNIHRVMQN------I 332
           CGG L++ ++V+TAAHC  +   K +   + LI    ++ +     +   +Q       I
Sbjct: 32  CGGILLNSHWVLTAAHCFKN---KKKVTDWRLIFGANEVVWGSNKPVKPPLQERFVEEII 88
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN--RAHNVKSP-TAIASGFGKLNY 389
           +H  Y +    + +DIAL+KI PPV     + P CL   +A   ++P T   +G+G L  
Sbjct: 89  IHEKYVS--GLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKE 146
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTI 446
              + S  L +  + +I+ + C+        + S+ +CA    G  DTCQGDSGGPL   
Sbjct: 147 KGPRTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLMCR 206
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                 + ++GITS+G  C  A  P +YT    Y+ WI   +
Sbjct: 207 DRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKI 248

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           CG +LI+  ++++AAHC T+     R+   FG+  K S  +   + R+   I+H  Y  +
Sbjct: 26  CGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPS-KMKRGLRRI---IVHEKY--K 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKL-NYFDTKESLR 397
             S  +DI+L +++ PV ++  +   CL  A     P  +   +GFG L N   ++  LR
Sbjct: 80  HPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLR 139
Query: 398 LMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
             +V L  I+  TC++ +     +    LCA  + G  D CQGDSGGPL +       Y 
Sbjct: 140 QAQVTL--IDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWY- 196
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G +C   N P +YTRV+    WI
Sbjct: 197 LAGIVSWGDECAKPNKPGVYTRVTALRDWI 226

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + C   + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCVGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           ++D  W  FCGGSLI P +V+TAAHC+   +     +R  L  +  Y   D +  V + I
Sbjct: 20  VRDRYWMHFCGGSLIHPQWVLTAAHCLGPDVKDLATLRVQLREQHLY-YQDQLLPVSRII 78
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 390
           +HP +    T    DIALL++  PV  S  +    L  A     P      +G+G +   
Sbjct: 79  VHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV--- 133
Query: 391 DTKESLR----LMKVVLDIINNDTCSKQ---------ETTLI-SSQLCATVMAGGKDTCQ 436
           D  E L     L +V + I+ N  C  +         +  +I    LCA      +D+C+
Sbjct: 134 DNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCK 191
Query: 437 GDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GDSGGPL      +C  N      G+ S+   C   N P IYTRV+YY+ WI H V
Sbjct: 192 GDSGGPL------VCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +E  +  +DI L+K+         +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSE--TYNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C    + +I+S + C   + GGKD CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCVGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P  YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  + +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKTRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++ P   +  ++P  L  +          SG+G      T +  +
Sbjct: 77  SSYNID--NDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGNT-MSSTADKNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTM 219

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+Y  +
Sbjct: 25  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDYQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R     +P  +   +G+G +N+   +    L
Sbjct: 85  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++   +  +    +CA   +  +D+C+GDSGGPL      +C   +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
            G+ S+G R CG+   P IYTRV+ Y  WI
Sbjct: 194 EGVVSWGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHR----------- 327
           FCGGSL+  ++++TAAHC+   L    P      L++   + +    H            
Sbjct: 181 FCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHL 240
Query: 328 -VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
            V    LHP Y  +  +  +D+AL+++      +  + P CL      +    I SG+GK
Sbjct: 241 GVKHTTLHPQY--DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGK 298
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQ----ETTLISSQLCATVMAGGKDTCQGDSGGP 442
              F  +    LM++ + I+++ TC K     +  +    +CA    GGKD C GDSGGP
Sbjct: 299 --QFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP 356
Query: 443 LQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + T+  +   + ++G  S+G  CG  +   +Y+ + +   WI
Sbjct: 357 MVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  E
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRE 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
           FCGGSL++ N+V++AAHC  S +     VR G   + +  VT+   + + +   I HPNY
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
           ++      +DI L+K++     +  ++P  L  +          SG+G      T +  +
Sbjct: 77  SSYNID--NDIMLIKLSKSATLNTYVQPVALPSSCAPAGTMCTVSGWGNT-MSSTADKNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + I++   C+     +I++ + CA  + GGKD+CQGDSGGP+      +C   + 
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G  C     P +Y +V  +  W+  T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 32  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 88  TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 145
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 146 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLIS  +V++AAHC  + +     VR G          +     ++ I HP Y  +
Sbjct: 24  FCGGSLISEQWVVSAAHCYKTRI----QVRLGEHNIKVLEGNEQFINAVKIIRHPKYNRD 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                +DI L+K++ P   +  +    L  A        + SG+G    F       L  
Sbjct: 80  TLD--NDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C +     + +S  C   + GGKD+CQ DSGGP+      +C   + G+ 
Sbjct: 138 LDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDSGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 21/217 (9%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY- 337
           ++ CGG LI P++V+TAAHC ++       V  G               V Q+  HP+Y 
Sbjct: 21  EYLCGGVLIDPSWVITAAHCYSNNY----QVLLGRNNLFKDEPFAQRRLVRQSFRHPDYI 76
Query: 338 ---TTEGTSQ-----YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY 389
               T  T Q      +D+ LL ++ P + +  +K   L         T +ASG+G  N 
Sbjct: 77  PLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNP 136
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
            +   S  L  V + +++N+ C +  +  +    LCA  M GGKDTC GDSGGPL     
Sbjct: 137 SEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPL----- 191
Query: 449 DLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            +C   + GITS G   C    TPAIY ++  +  WI
Sbjct: 192 -ICDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWI 227

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 34  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 89
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 90  TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 147
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 148 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 201
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 202 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 230

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
           T     L  +   I+++ +C S     + S+  CA  + G  D+CQGDSGGP+      +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C   + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 183 CSGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 32  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 88  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLKC 145
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 146 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 46  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 101
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 102 --TLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 159
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 160 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 213
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 214 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 242

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI--LHPNYTT 339
           CGG+LI+ N+V+TAAHCI++     R  R   + K +  V D    +   +  +H +   
Sbjct: 30  CGGTLIASNFVLTAAHCISN----TRTYRVA-VGKNNLEVEDEEGSLFVGVDTIHVHKRW 84
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLR 397
                 +DIAL+K+A  VE S+T++ ACL    ++  K      +G+G+L + +   + +
Sbjct: 85  NALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRL-WTNGPIADK 143
Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKD----TCQGDSGGPLQTIMPDLCMY 453
           L + +  ++++ TCS+ +      ++  T++  G D     C GDSGGPL   + +   +
Sbjct: 144 LQQGLQPVVDHATCSRID--WWGFRVKKTMVCAGGDGVISACNGDSGGPLNCQLEN-GSW 200
Query: 454 NIIGITSYG--RQCGHANTPAIYTRVSYYVPWI 484
            + GI S+G  R C     P +YTRVS Y+ WI
Sbjct: 201 EVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWI 233

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDHK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 34  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 89
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 90  TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 147
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGD+GGP+      +C   + GI 
Sbjct: 148 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDAGGPV------VCNGELQGIV 201
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 202 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 230

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG L+   +V+TAAHC      K +Y VR G  +  S    +   +V Q+I HP Y  
Sbjct: 25  ICGGVLVGDRWVLTAAHC-----KKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNN 79
Query: 340 EGTSQY-HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
                + HDI L+++       + +KP  L           I SG+G +          L
Sbjct: 80  SNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTL 139
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
               + I + + C +     I+  +     + G DTCQGDSGGPL      +C   + GI
Sbjct: 140 NCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPL------VCDGMLQGI 193
Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           TS+G   CG    P +YT++  Y  WI  T+
Sbjct: 194 TSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGD+GGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDAGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 14/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSL+S ++V++AAHC  S L     VR G         T+        I HPNY++ 
Sbjct: 24  FCGGSLVSKDWVVSAAHCYKSVL----RVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSY 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +   DI L+K+  P   ++ +    L       +     SG+G        +  +L  
Sbjct: 80  NINN--DIMLIKLTKPATLNQYVHAVALPTECAADATMCTVSGWGN-TMSSVADGDKLQC 136
Query: 401 VVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           + L I+++  C+     +I+ S  CA  + GGKD+CQGDSGGP+      +C   + G+ 
Sbjct: 137 LSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPV------VCNGVLQGVV 190
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +Y +V     W+  T+
Sbjct: 191 SWGYGCAERDHPGVYAKVCVLSGWVRDTM 219

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLIS  +V++AAHC  + +     VR G          +      + I HP Y  +
Sbjct: 24  FCGGSLISEQWVVSAAHCYKTRI----QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRD 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                +DI L+K++ P   +  +    L  A        + SG+G    F       L  
Sbjct: 80  TLD--NDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C +     + +S  C   + GGKD+CQ D+GGP+      +C   + G+ 
Sbjct: 138 LDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLIS  +V++AAHC  + +     VR G          +      + I HP Y  +
Sbjct: 24  FCGGSLISEQWVVSAAHCYKTRI----QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRD 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                +DI L+K++ P   +  +    L  A        + SG+G    F       L  
Sbjct: 80  TLD--NDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C +     + +S  C   + GGKD+CQ D+GGP+      +C   + G+ 
Sbjct: 138 LDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 32  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 88  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 145
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQG+SGGP+      +C   + GI 
Sbjct: 146 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGNSGGPV------VCNGELQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            +G  C   + P +YT+V  YV WI  T+
Sbjct: 192 KWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            +G  C   + P +YT+V  YV WI  T+
Sbjct: 192 EWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGD GGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDCGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 22/215 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYV--RFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           CGG+L+  ++V+TAAHCI+S     R V  R  L T    S+   + ++   ++H ++ +
Sbjct: 30  CGGTLVDQSWVLTAAHCISSSR-TYRVVLGRHSLSTNEPGSLAVKVSKL---VVHQDWNS 85
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLR 397
              S  +DIALLK+A PV  ++ ++  CL  A  +   +     +G+G+L        + 
Sbjct: 86  NQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDI- 144
Query: 398 LMKVVLDIINNDTCSK---QETTLISSQLCATVMAGGK---DTCQGDSGGPLQTIMPDLC 451
           L +  L +++  TCSK     +T+ ++ +C    AGG     +C GDSGGPL     +  
Sbjct: 145 LQQGQLLVVDYATCSKPGWWGSTVKTNMIC----AGGDGIISSCNGDSGGPLNCQGAN-G 199
Query: 452 MYNIIGITSYGRQ--CGHANTPAIYTRVSYYVPWI 484
            + + GI S+G    C + + P+++TRVS Y+ WI
Sbjct: 200 QWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWI 234

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++A HC  S +     VR G          +      + I HP Y  +
Sbjct: 24  FCGGSLINEQWVVSAGHCYKSRI----QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++     +  +    L  A        + SG+G            L  
Sbjct: 80  TLN--NDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADXPDELQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   +++   C       I+S + C   + GGKD+CQGDSGGP+      +C   + G+ 
Sbjct: 138 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI +T+
Sbjct: 192 SWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  ++I L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGDEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  ++I L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 18/211 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+  ++V+TAAHC+ S +     V  G    +    T  +  V + I HP+Y  E
Sbjct: 28  ICGGFLVREDFVLTAAHCLGSSIN----VTLGAHNIMERERTQQVIPVRRPIPHPDYNDE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFDTKESLRL 398
             +  +DI LLK+    + ++ + P  L R+     P  + S  G+G+L   +   + +L
Sbjct: 84  TLA--NDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLG-VNMPSTDKL 140
Query: 399 MKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +V L++ + + C  +    I  +Q+CA   +  K++  GDSGGPL      +C     G
Sbjct: 141 QEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPL------VCNGVAQG 194
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I SYGR  G   TP +YTR+S ++ WI  T+
Sbjct: 195 IVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 274 TMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNIL 333
           T K ++  CGG LIS  +V+TAAHC     G+   V  G         T    +V + I+
Sbjct: 22  TEKGLRVICGGFLISRQFVLTAAHC----KGREITVILGAHDVRKRESTQQKIKVEKQII 77
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFD 391
           H +Y +      HDI LLK+   VE +  +    L    +   P A+  A+G+GK    D
Sbjct: 78  HESYNS--VPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD 135
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
              S  L +V L I++   C          Q+C       +    GDSGGPL      LC
Sbjct: 136 PT-SYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPL------LC 188
Query: 452 MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                GI SYG     A  PAI+TRVS YVPWI
Sbjct: 189 AGVAHGIVSYGHP--DAKPPAIFTRVSTYVPWI 219

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G            L  
Sbjct: 80  TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGK +CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKSSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G            L  
Sbjct: 80  TLN--NDIMLIKLSSPVKLNARVATIALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+LI  N+VMTAAHC+   L     V  G       + T+    V + ++HP + T+ 
Sbjct: 30  CGGTLIRQNWVMTAAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDD 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESLRL 398
            +  +DIALL++A  V  +  ++   L RA  +    SP  I +G+G L   + + +  L
Sbjct: 88  VAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSPCYI-TGWG-LTRTNGQLAQTL 145
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L  ++   CS      +T+ +S +CA    G +  CQGDSGGPL  ++     Y +
Sbjct: 146 QQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNG--QYAV 202
Query: 456 IGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
            G+TS+  +  C     P ++TRVS Y+ WI + +
Sbjct: 203 HGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 97/234 (41%), Gaps = 21/234 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
             +T +   L  V L I+    C       I+  + CA      GK  D C+GDSGGP  
Sbjct: 146 --ETGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 203
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSL 498
              P    +  +GI S+G  C        YT V     WI   +  DQF  SS+
Sbjct: 204 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQFGCSSV 255

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+I+  +V+ AAHC+         +  G     + S     H V    ++ NY  +
Sbjct: 27  FCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENY--D 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
             +  +D++++K A  + F   + P C  + A++     +  SG+G +N         L 
Sbjct: 85  PATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLR 144
Query: 400 KVVLDIINNDTCSKQET--TLISSQLCATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNI 455
            V L+I  N  C    T  T+    +CAT   G   +D+CQGDSGGPL ++     ++++
Sbjct: 145 YVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPL-SVKDGSGIFSL 203
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GI S+G  C  +  P +Y+RV ++  WI  T+
Sbjct: 204 VGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTI 235

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+   +
Sbjct: 25  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R      P  +   +G+G +++   +   RL
Sbjct: 85  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPD-RL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++   +  +    +CA   +  +D+C+GDSGGPL      +C   +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITQRMMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
            G+ + G R CG+   P IYTRV+ Y  WI
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+LI  N+VMTAAHC+   L     V  G       + T+    V + ++HP + T+ 
Sbjct: 30  CGGTLIRQNWVMTAAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDD 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESLRL 398
            +  +DIALL++A  V  +  ++   L RA  +    SP  I +G+G L   + + +  L
Sbjct: 88  VAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYI-TGWG-LTRTNGQLAQTL 145
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L  ++   CS      +T+ +S +CA    G +  CQGDSGGPL  ++     Y +
Sbjct: 146 QQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNG--QYAV 202
Query: 456 IGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
            G+TS+  +  C     P ++TRVS Y+ WI + +
Sbjct: 203 HGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C     P  YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 39/227 (17%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---------- 331
           CGG+LI  N+VMTAAHC+                +L++ V    H + QN          
Sbjct: 30  CGGTLIRQNWVMTAAHCVDR--------------ELTFRVVVGEHNLNQNDGTEQYVGVQ 75
Query: 332 --ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGK 386
             ++HP + T+  +  +DIALL++A  V  +  ++   L RA  +    SP  I +G+G 
Sbjct: 76  KIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYI-TGWG- 133
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL 443
           L   + + +  L +  L  ++   CS      +T+ +S +CA    G +  CQGDSGGPL
Sbjct: 134 LTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPL 192
Query: 444 QTIMPDLCMYNIIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
             ++     Y + G+TS+  +  C     P ++TRVS Y+ WI + +
Sbjct: 193 HCLVNG--QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+  +
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L  
Sbjct: 80  --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   ++    C       I+  + C   + GGK +CQGDSGGP+      +C   + GI 
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKGSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   + P +YT+V  YV WI  T+
Sbjct: 192 SWGYGCALPDNPDVYTKVCNYVDWIQDTI 220

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 30/226 (13%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           ++D  W   CGG+LI+PN+V+TAAHCI++ L     V  G   K +  V D    +   +
Sbjct: 34  LRDNTWRHTCGGTLITPNHVLTAAHCISNTL--TYRVALG---KNNLEVEDEAGSLYVGV 88
Query: 333 ----LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGK 386
               +H  + +      +DIAL+K+A  VE  +T++ ACL    ++  +      +G+G+
Sbjct: 89  DTIFVHEKWNSFLVR--NDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGR 146
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGK---DTCQGDSG 440
           L Y +   +  L + +  +++  TCS+++   TT+  + +C    AGG      C GDSG
Sbjct: 147 L-YTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVC----AGGDGVISACNGDSG 201
Query: 441 GPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWI 484
           GPL         +++ GI S+G    C     P ++TRVS Y+ WI
Sbjct: 202 GPLNCQADG--QWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWI 245

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 92/234 (39%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHCI  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYV 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIALLK+  PV FS+ + P CL     V S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
              T     +   VL ++N        C       I+  + CA          D C+GDS
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQKVI--DQF 257

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+   +
Sbjct: 32  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 91
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R     +P  +   +G+G +N+   +    L
Sbjct: 92  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 148
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++   +  +    +CA   +  +D+C+GDSGGPL      +C   +
Sbjct: 149 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 200
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
            G+ + G R CG+   P IYTRV+ Y  WI
Sbjct: 201 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 230

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++A HC  S +     VR G          +      + I HP Y  +
Sbjct: 24  FCGGSLINEQWVVSAGHCYKSRI----QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K++     +  +    L  A        + SG+G            L  
Sbjct: 80  TLN--NDIMLIKLSSRAVINAHVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   +++   C       I+S + C   + GGKD+CQGD+GGP+      +C   + G+ 
Sbjct: 138 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDAGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI +T+
Sbjct: 192 SWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+   +
Sbjct: 25  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R     +P  +   +G+G +N+   +    L
Sbjct: 85  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++   +  +    +CA   +  +D+C+GDSGGPL      +C   +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
            G+ + G R CG+   P IYTRV+ Y  WI
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
           FCGGSLI+  +V++AAHC  S +     VR G          DNI+ V  N         
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
           I+HP+Y +   +  +DI L+K+      +  +    L  +        + SG+G      
Sbjct: 71  IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
           T     L  +   I+++ +C       I+S +    + GG D+CQGDSGGP+      +C
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGLEGG-DSCQGDSGGPV------VC 181
Query: 452 MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              + GI S+G  C   N P +YT+V  YV WI  T+
Sbjct: 182 SGKLQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTI 217

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 94/229 (41%), Gaps = 21/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTAYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
             +T +   L  V L I+    C       I+  + CA      GK  D C+GDSGGP  
Sbjct: 146 --ETGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 203
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
              P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 204 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 250

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
               + S+ L  V L I+    C       I+  + CA      GK  D C+GDSGGP  
Sbjct: 146 ETWGQPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 204
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
              P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 205 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 251

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+   +
Sbjct: 25  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R     +P  +   +G+G +N+   +    L
Sbjct: 85  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++   +  +    +CA   +  +D+C+GD+GGPL      +C   +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDAGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
            G+ + G R CG+   P IYTRV+ Y  WI
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 92/234 (39%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHCI  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYV 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIALLK+  PV FS+ + P CL     V S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
              T     +   VL ++N        C       I+  + CA          D C+GD+
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDA 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVI--DQF 257

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG LI  N+V+TAAHC     G+   V  G         T     V++   HP Y T 
Sbjct: 29  FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
            ++ +HDI LLK+      +  +         N   P  +   +G+G+        S  L
Sbjct: 84  -STLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L +++   CS       + QLC       K   +GDSGGPL      LC     GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGAAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYGR    A  PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYQPWI 219

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 25/222 (11%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           G+L+  N+V+TAAH +           +R G + +LS   T      +   +H  YT + 
Sbjct: 26  GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 83
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFGKLNYFDTKESL- 396
               +DIAL+K+   V  +  + P CL R              ASG+G      T+    
Sbjct: 84  GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGL-----TQRGFL 137
Query: 397 --RLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
              LM V + I+++  C+           ++ ++ LCA + +GGKD+C+GDSGG L  + 
Sbjct: 138 ARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLD 197
Query: 448 PDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
            +   + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 198 SETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 15/215 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG+LI+  +V++AAHC          +       LS    D   R +  ++ P+    
Sbjct: 25  LCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVP 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT----AIASGFGKLNYFDTKES 395
           GT+  HDIALL++  PV  ++ + P CL  R  + ++      ++ SG+G+L       +
Sbjct: 85  GTTN-HDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL-LDRGATA 142
Query: 396 LRLMKVVLDIINNDTCSKQETTLISS------QLCATVMAGGKDTCQGDSGGPLQTIMPD 449
           L LM + +  +    C +Q   +  S        CA    G KD+C+GDSGGP  T    
Sbjct: 143 LELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRG 202
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
              + + GI S+G+ C       +YTRVS Y+ W+
Sbjct: 203 --TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG LI  N+V+TAAHC     G+   V  G         T     V++   HP Y T 
Sbjct: 29  FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
            ++ +HDI LLK+      +  +         N   P  +   +G+G+        S  L
Sbjct: 84  -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L +++   CS       + QLC       K   +GDSGGPL      LC     GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGAAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYGR    A  PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYQPWI 219

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 93/229 (40%), Gaps = 21/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
             +  +   L  V L I+    C       I+  + CA      GK  D C+GDSGGP  
Sbjct: 146 --EKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 203
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
              P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 204 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 250

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     ++   L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG LI  N+V+TAAHC     G+   V  G         T     V++   HP Y T 
Sbjct: 29  FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
            ++ +HDI LLK+      +  +         N   P  +   +G+G+        S  L
Sbjct: 84  -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L +++   CS       + QLC       K   +GDSGGPL      LC     GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYGR    A  PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYRPWI 219

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG LI  N+V+TAAHC     G+   V  G         T     V++   HP Y T 
Sbjct: 31  FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
            ++ +HDI LLK+      +  +         N   P  +   +G+G+        S  L
Sbjct: 86  -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 143
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L +++   CS       + QLC       K   +GDSGGPL      LC     GI
Sbjct: 144 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 197
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYGR    A  PA++TR+S+Y PWI
Sbjct: 198 VSYGRS--DAKPPAVFTRISHYRPWI 221

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG LI  N+V+TAAHC     G+   V  G         T     V++   HP Y T 
Sbjct: 29  FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
            ++ +HDI LLK+      +  +         N   P  +   +G+G+        S  L
Sbjct: 84  -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L +++   CS       + QLC       K   +GDSGGPL      LC     GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYGR    A  PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYRPWI 219

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+   +
Sbjct: 25  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R     +P  +   +G+G +N+   +    L
Sbjct: 85  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++   +  +    +CA   +  +D+C+GDSGGPL      +C   +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            G+ + G   CG+   P IYTRV+ Y  WI
Sbjct: 194 EGVVTSGSAVCGNRKKPGIYTRVASYAAWI 223

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 19/227 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGF-GKL-NYFD 391
           HP Y         DIAL+K+  PV FS+ + P CL       S   + +G+ G++  + +
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAAS--LLQAGYKGRVTGWGN 143
Query: 392 TKESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQTI 446
            K    +++VV L I+    C       I+  + CA      GK  D C+GDSGGP    
Sbjct: 144 LKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 203
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
            P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 204 SPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 248

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D CQGDS
Sbjct: 146 ETWTTNVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACQGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G+ C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           G+L+  N+V+TAAH +           +R G + +LS   T      +   +H  YT + 
Sbjct: 112 GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 169
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFG--KLNYFDTKES 395
               +DIAL+K+   V  +  + P CL R              ASG+G  +  +     +
Sbjct: 170 GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL----A 224
Query: 396 LRLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
             LM V + I+++  C+           ++ ++ LCA + +GGKD+C+GDSGG L  +  
Sbjct: 225 RNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS 284
Query: 449 DLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           +   + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 285 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 325

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 25/222 (11%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           G+L+  N+V+TAAH +           +R G + +LS   T      +   +H  YT + 
Sbjct: 26  GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 83
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFGKLNYFDTKESL- 396
               +DIAL+K+   V  +  + P CL R              ASG+G      T+    
Sbjct: 84  GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGL-----TQRGFL 137
Query: 397 --RLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
              LM V + I+++  C+           ++ ++ LCA + +GGKD+C+GD+GG L  + 
Sbjct: 138 ARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLD 197
Query: 448 PDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
            +   + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 198 SETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 94/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA          D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGFKVNDTKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 98/236 (41%), Gaps = 24/236 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI------ 332
           ++ CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I      
Sbjct: 29  RFLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 88
Query: 333 -LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGK 386
            +HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G 
Sbjct: 89  YIHPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGN 147
Query: 387 LNYFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQG 437
           L    T    K    +++VV L I+    C       I+  + CA      GK  D C+G
Sbjct: 148 LKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAYYKPDEGKRGDACEG 207
Query: 438 DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           DSGGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 208 DSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 261

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 91/234 (38%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHCI  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYV 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIALLK+  PV FS+ + P CL     V S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
              T     +   VL ++N        C       I+  + CA          D C+GDS
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQKVI--DQF 257

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 59  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 118
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 119 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 177
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 178 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 237
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 238 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 289

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 63  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 122
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 123 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 181
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 182 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 241
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 242 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 293

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 57  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 56  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 115
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 116 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 174
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 175 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 234
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 235 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 286

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 63  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 122
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 123 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 181
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 182 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 241
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 242 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 293

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 57  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG+LI+  +V++AAHC          +       LS    D   R +  ++ P+    
Sbjct: 25  LCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVP 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT----AIASGFGKLNYFDTKES 395
           GT+  HDIALL++  PV  ++ + P CL  R  + ++      ++ SG+G+L   D   +
Sbjct: 85  GTTN-HDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL--LDRGAT 141
Query: 396 LRLMKVV-LDIINNDTCSKQETTLISS------QLCATVMAGGKDTCQGDSGGPLQTIMP 448
             +++V+ +  +    C +Q   +  S        CA    G KD+C+GDSGGP  T   
Sbjct: 142 ALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR 201
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
               + + GI S+G+ C       +YTRVS Y+ W+
Sbjct: 202 G--TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 57  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 59  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 118
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 119 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 177
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 178 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 237
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 238 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 289

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           G+L+  N+V+TAAH +           +R G + +LS   T      +   +H  YT + 
Sbjct: 187 GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 244
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFG--KLNYFDTKES 395
               +DIAL+K+   V  +  + P CL R              ASG+G  +  +     +
Sbjct: 245 GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL----A 299
Query: 396 LRLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
             LM V + I+++  C+           ++ ++ LCA + +GGKD+C+GDSGG L  +  
Sbjct: 300 RNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS 359
Query: 449 DLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           +   + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 360 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +FCGG+LI+P +V+TAAHC ++       ++ G+ +K   +  +      +  + PN   
Sbjct: 24  FFCGGTLINPEWVVTAAHCDSTDF----QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNN 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
                  DI L+K+  P+  S+ + P  L  +           G+G +     KE+   +
Sbjct: 80  NEVLD-KDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSIT--PVKETFPDV 136
Query: 400 KVV--LDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
                ++++++  C      L++    LCA ++ GGKDTC GDSGGPL      +C    
Sbjct: 137 PYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPL------ICNGQF 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
            GI SYG   CG    P IYT V  Y  WI   +
Sbjct: 191 QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 38/240 (15%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--------- 327
           + ++ CGG++IS  Y++TAAHC+         +R G   +   S  ++  +         
Sbjct: 143 ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLG---EHRISTEEDCRQQGRKKKCAP 199
Query: 328 ------VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP---- 377
                 + ++++H  Y        HDIALLK+   V F + +KP CL     +K      
Sbjct: 200 PVVNVGIEKHLIHEKYDARHI--MHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQI 257
Query: 378 -TAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGG--KD 433
            T   +G+G     +   S  L++  + +     CS+     +  SQLC   + GG  +D
Sbjct: 258 STYFVTGWGTTE--NGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLC---VGGGDLQD 312
Query: 434 TCQGDSGGPLQTIMPDLCMYN----IIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           +C+GDSGGPLQ     L  Y       GI S G   CG  + P +YT V  YV WI  T+
Sbjct: 313 SCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTM 372

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRFGLIT---KLSYSVTDNIHRVMQNIL 333
           CGGSLI+P+ V+T AHC+ S        K R   +  +T   +L Y       ++ Q I+
Sbjct: 164 CGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQE----RKIRQVII 219
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV-KSPTAIASGFGKLNYFDT 392
           H N+  +  +  +D+ALL +  P+  ++ +   CL +   +  S    ASG+GK  +   
Sbjct: 220 HSNFNPK--TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSR 277
Query: 393 -KESLRLMKVVLDIINNDTCSKQ--------ETTLISSQLCATVMAGGKDTCQGDSGGPL 443
            + S  L K+ L  ++ D C           +  L  + +CA     GKDTC GD G PL
Sbjct: 278 HRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTGDGGSPL 336
Query: 444 QTIMP-DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
               P +   Y  +GI ++G  CG  N P +Y  V+++  WI
Sbjct: 337 FCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWI 378

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNIL 333
            CG SLIS  +V+TAAHC+  P     +      VR G  ++  Y    + I  + +  +
Sbjct: 57  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 14/155 (9%)
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL----NYFDTKES 395
           +G    HD+ LL++  P + ++ +K   L         T  ASG+G +    + F+  + 
Sbjct: 2   DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDE 61
Query: 396 LRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           ++ +++ L  + N  C+      ++ S LCA  + GGKDTC GDSGGPL      +C   
Sbjct: 62  IQCVQLTL--LQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPL------ICNGM 113
Query: 455 IIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
             GITS+G   CG AN P+IYT++ +Y+ WI  T+
Sbjct: 114 WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNIL 333
            CG SLIS  +V+TAAHC+  P     +      VR G  ++  Y    + I  + +  +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 192 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 251
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 252 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 310
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 311 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 370
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 371 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 422

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNIL 333
            CG SLIS  +V+TAAHC+  P     +      VR G  ++  Y    + I  + +  +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +FCGG+LI+P +V+TAAHC ++       ++ G+ +K   +  +      +  + PN   
Sbjct: 24  FFCGGTLINPEWVVTAAHCDSTNF----QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNN 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
                  DI L+K+  P+  S+ + P  L  +           G+G +     KE+   +
Sbjct: 80  NEVLD-KDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSIT--PVKETFPDV 136
Query: 400 KVV--LDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
                ++++++  C      L++    LCA ++ GGKDTC GDSGGPL      +C    
Sbjct: 137 PYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPL------ICNGQF 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
            GI SYG   CG    P IYT V  Y  WI   +
Sbjct: 191 QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 58  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 117
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 118 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 176
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GD+
Sbjct: 177 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 236
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 237 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 288

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 107/230 (46%), Gaps = 23/230 (10%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
           MA   FL+ GG     K FCGG L+   +V+TAAHC     G+   V  G     +   T
Sbjct: 15  MAYYEFLKVGGK----KMFCGGFLVRDKFVLTAAHC----KGRSMTVTLGAHNIKAKEET 66
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR--AHNVKSPTAI 380
             I  V + I HP+Y  +  S  +DI LLK+    + +  ++P  L R  AH        
Sbjct: 67  QQIIPVAKAIPHPDYNPDDRS--NDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECY 124
Query: 381 ASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGD 438
            +G+GK+   D +    L +V L +  +  C  Q  +    ++++C         + +GD
Sbjct: 125 VAGWGKVTP-DGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFRGD 183
Query: 439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           SGGPL      +C     GI SYG+  G A  P ++TRV  +V WI  T+
Sbjct: 184 SGGPL------VCKRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTM 225

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 282 CGGSLISPNYVMTAAHCI---------TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           CGG L++  +V+TAAHC          +  LG  R  R                +  ++ 
Sbjct: 26  CGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRI---------------KASKSF 70
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
            HP Y+T+  +  +D+ L+K+      S  +K   L         T   SG+G     D 
Sbjct: 71  RHPGYSTQ--THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDV 128
Query: 393 KESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
                LM V + +I+   C+K    L+ +S LCA +    K+ C GDSGGPL      +C
Sbjct: 129 TFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPL------VC 182
Query: 452 MYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
              + G+ S+G   CG  N P +YT+V  +  WI  T+
Sbjct: 183 RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 28  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 87
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 88  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 146
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GD+
Sbjct: 147 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 206
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 207 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 258

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 282 CGGSLISPNYVMTAAHCI---------TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           CGG L++  +V+TAAHC          +  LG  R  R                +  ++ 
Sbjct: 26  CGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRI---------------KASKSF 70
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
            HP Y+T+  +  +D+ L+K+      S  +K   L         T   SG+G     D 
Sbjct: 71  RHPGYSTQ--THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDV 128
Query: 393 KESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
                LM V + +I+   C+K    L+ +S LCA +    K+ C GDSGGPL      +C
Sbjct: 129 TFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPL------VC 182
Query: 452 MYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
              + G+ S+G   CG  N P +YT+V  +  WI  T+
Sbjct: 183 RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GD+
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 76  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 135
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 136 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 194
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GD+
Sbjct: 195 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 254
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 255 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 306

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 22/223 (9%)
Query: 279 KWFCGGSLISPNYVMTAAHCIT-SPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
           ++ CGG LIS  +V+TAAHC   S L     V  G   ++     +   +V + I+H  +
Sbjct: 42  RFLCGGILISSCWVLTAAHCFQESYLPDQLKVVLGRTYRVKPGEEEQTFKVKKYIVHKEF 101
Query: 338 TTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKSPTAIA---SGFGKLNYF 390
             +  +  +DIALL++        + S++++  CL  A N++ P       SG+GK    
Sbjct: 102 DDD--TYNNDIALLQLKSDSPQCAQESDSVRAICLPEA-NLQLPDWTECELSGYGKHKSS 158
Query: 391 DTKESLRLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGK------DTCQGDSGG 441
               S +L +  + +  +  C+ +     T+ ++ LCA     G+      D CQGDSGG
Sbjct: 159 SPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGG 218
Query: 442 PLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           PL   M D  M  ++GI S+G  CG  + P +YT+V+ Y+ WI
Sbjct: 219 PL-VCMNDNHM-TLLGIISWGVGCGEKDVPGVYTKVTNYLGWI 259

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 28/217 (12%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSP------LGKPRYVRFGLITKLSYSVTDNIHRVMQ 330
           D  +FCGGSLISP +++TAAHC+         LG    +R    T+++   TD       
Sbjct: 21  DDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGA-HNIREDEATQVTIQSTD------- 72
Query: 331 NILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYF 390
             +H NY +   S  +DIA++++  PV  +  +    L             +G+G  +  
Sbjct: 73  FTVHENYNSFVIS--NDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDS 130
Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
               S  L +V + I++N  C      +    +C     GGK TC GDSGGPL       
Sbjct: 131 ALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICID-STGGKGTCNGDSGGPLN------ 183
Query: 451 CMYNII--GITSYGRQCG-HANTPAIYTRVSYYVPWI 484
             YN +  GITS+G   G  A  P  +TRV+Y++ WI
Sbjct: 184 --YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 17/217 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNIL--HPNYTT 339
           CGGSLI+P++V+TA HCI++   +   V  G   +     ++ +  +    L  HP + +
Sbjct: 41  CGGSLIAPDWVVTAGHCIST--SRTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNS 98
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESL 396
              +  +DIAL+K++   +  + ++ A L  A ++   ++P  I SG+G+L Y       
Sbjct: 99  NCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYI-SGWGRL-YTGGPLPD 156
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT---CQGDSGGPLQTIMPDLCMY 453
           +L + +L +++ + CS+ +   I+ +   T++  G DT   C GDSGGPL     D   +
Sbjct: 157 KLQEALLPVVDYEHCSQYDWWGITVK--KTMVCAGGDTRSGCDGDSGGPLNCPAAD-GSW 213
Query: 454 NIIGITSY--GRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + G+TS+     C     P ++TRVS ++ WI  T+
Sbjct: 214 QVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINETI 250

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         +IAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+ DS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEADS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 90/229 (39%), Gaps = 22/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 76  LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 135
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y  +      DIALLK+  P+E S+ + P CL                  +G+G   
Sbjct: 136 HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRR 194
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T     +   VL ++N        C       I+  + CA    G GK  D C+GDS
Sbjct: 195 ETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDS 254
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GGP     P    +  +GI S+G  C        YT V     WI   +
Sbjct: 255 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 303

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM-----QNILHPN 336
           CGGSLI+P++V+TA HCI++   +   V  G   +   SV +   +V+        +HP 
Sbjct: 28  CGGSLIAPDWVVTAGHCIST--SRTYQVVLG---EYDRSVLEGSEQVIPINAGDLFVHPL 82
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTK 393
           + +   +  +DIAL+K++   +  + ++ A L  A ++   ++P  I SG+G+L Y    
Sbjct: 83  WNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYI-SGWGRL-YTGGP 140
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT---CQGDSGGPLQTIMPDL 450
              +L + +L  ++ + CS+ +   I+ +   T++  G DT   C GDSGGPL     D 
Sbjct: 141 LPDKLQQALLPTVDYEHCSQWDWWGITVK--KTMVCAGGDTRSGCNGDSGGPLNCPAADG 198
Query: 451 CMYNIIGITSY--GRQCGHANTPAIYTRVSYYVPWIVHTV 488
             + + G+TS+     C     P ++TRVS ++ WI  T+
Sbjct: 199 -SWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 90/229 (39%), Gaps = 22/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y  +      DIALLK+  P+E S+ + P CL                  +G+G   
Sbjct: 87  HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T     +   VL ++N        C       I+  + CA    G GK  D C+GDS
Sbjct: 146 ETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GGP     P    +  +GI S+G  C        YT V     WI   +
Sbjct: 206 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 90/229 (39%), Gaps = 22/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y  +      DIALLK+  P+E S+ + P CL                  +G+G   
Sbjct: 87  HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T     +   VL ++N        C       I+  + CA    G GK  D C+GDS
Sbjct: 146 ETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GGP     P    +  +GI S+G  C        YT V     WI   +
Sbjct: 206 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 106/233 (45%), Gaps = 29/233 (12%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
           MA   FL+ GG     K FCGG L+   +V+TAAHC     G+   V  G     +   T
Sbjct: 15  MAYYEFLKVGGK----KMFCGGFLVRDKFVLTAAHC----KGRSMTVTLGAHNIKAKEET 66
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR--AHNVKSPTAI 380
             I  V + I HP+Y  +  S  +DI LLK+    + +  ++P  L R  AH        
Sbjct: 67  QQIIPVAKAIPHPDYNPDDRS--NDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECY 124
Query: 381 ASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQG--- 437
            +G+GK+   D +    L +V L +  +  C   E+   SS   A  +  G    +G   
Sbjct: 125 VAGWGKVTP-DGEFPKTLHEVKLTVQKDQVC---ESQFQSSYNRANEICVGDSKIKGASF 180
Query: 438 --DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
             DSGGPL      +C     GI SYG+  G A  P ++TRV  +V WI  T+
Sbjct: 181 EEDSGGPL------VCKRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTM 225

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 23/216 (10%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +FCG +LI+  +V+TAAHC ++       ++ G+ +K   +  +      +  + PN   
Sbjct: 23  YFCGLTLINQEWVVTAAHCDSTNF----QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNM 78
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS-----GFGKLNYFDTKE 394
                  DI L+K+  P+  S+ + P  L       +P ++ S     G+G +   +   
Sbjct: 79  SEVLD-KDIMLIKLDKPISNSKHIAPLSL-----PSNPPSVGSVCRIMGWGSITIPNETY 132
Query: 395 SLRLMKVVLDIINNDTCSKQETTL-ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
                   +++++ + C      L   + LCA V+ GGKDTC GDSGGPL      +C  
Sbjct: 133 PDVPYCANINLVDYEVCQGAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPL------ICNG 186
Query: 454 NIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
              GI SYG   CG    P IYT V  Y  WI   +
Sbjct: 187 QFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNI 222

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D C+ DS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEPDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G  C        YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPN 336
           ++ CGG LIS  ++++AAHC       P +  V  G   ++     +    V + I+H  
Sbjct: 42  RFLCGGILISSCWILSAAHCFQERF-PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKE 100
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKSPTAIA---SGFGKLNY 389
           +  +  +  +DIALL++        + S  ++  CL  A +++ P       SG+GK   
Sbjct: 101 FDDD--TYDNDIALLQLKSDSSRCAQESSVVRTVCLPPA-DLQLPDWTECELSGYGKHEA 157
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCA-TVMAGG-----KDTCQGDSG 440
                S RL +  + +  +  C+ Q     T+  + LCA    +GG      D CQGDSG
Sbjct: 158 LSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSG 217
Query: 441 GPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           GPL   + D  M  ++GI S+G  CG  + P +YT+V+ Y+ WI   + P
Sbjct: 218 GPL-VCLNDGRM-TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP 265

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPN 336
           ++ CGG LIS  ++++AAHC       P +  V  G   ++     +    V + I+H  
Sbjct: 29  RFLCGGILISSCWILSAAHCFQERF-PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKE 87
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKSPTAIA---SGFGKLNY 389
           +  +  +  +DIALL++        + S  ++  CL  A +++ P       SG+GK   
Sbjct: 88  FDDD--TYDNDIALLQLKSDSSRCAQESSVVRTVCLPPA-DLQLPDWTECELSGYGKHEA 144
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCA-TVMAGG-----KDTCQGDSG 440
                S RL +  + +  +  C+ Q     T+  + LCA    +GG      D CQGDSG
Sbjct: 145 LSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSG 204
Query: 441 GPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           GPL   + D  M  ++GI S+G  CG  + P +YT+V+ Y+ WI   + P
Sbjct: 205 GPL-VCLNDGRM-TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP 252

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 15/223 (6%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K  CGGSLI  ++V+TA  C  S   K      G+     +   D   + + N+    Y 
Sbjct: 22  KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHD--VHGRGDEKCKQVLNVSQLVYG 79
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIAS-GFGKLNYFDTKESL 396
            EG+    D+ L+K+A P    + +    L N    +   T+ +  G+G     +    L
Sbjct: 80  PEGS----DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLL 135
Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
           R+    L I+ N+ CS+    + TL  S++CA     G   C+GD GGPL  +     M 
Sbjct: 136 RVAH--LYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL--VCEQHKMR 191
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
            ++G+   GR C   N P I+ RV+YY  WI   +   + P S
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS 234

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 15/223 (6%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K  CGGSLI  ++V+TA  C  S   K      G+     +   D   + + N+    Y 
Sbjct: 22  KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHD--VHGRGDEKCKQVLNVSQLVYG 79
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIAS-GFGKLNYFDTKESL 396
            EG+    D+ L+K+A P    + +    L N    +   T+ +  G+G     +    L
Sbjct: 80  PEGS----DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLL 135
Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
           R+    L I+ N+ CS+    + TL  S++CA     G   C+GD GGPL  +     M 
Sbjct: 136 RVAH--LYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL--VCEQHKMR 191
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
            ++G+   GR C   N P I+ RV+YY  WI   +   + P S
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS 234

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 27/240 (11%)
Query: 264 AEVGFLEEGGTMKDVKWF-CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
           A++G L     +KD     CGG  I   +++TAAHC+ +     +  R+ + T +   + 
Sbjct: 328 AQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRAS----KTHRYQIWTTVVDWIH 383
Query: 323 DNIHRVM-----QNILHPNYTTEGTSQYHDIALLKIAPP-----VEFSETLKPACLNRAH 372
            ++ R++     + I H NY   GT Q +DIAL+++         E   ++ PAC+  + 
Sbjct: 384 PDLKRIVIEYVDRIIFHENYNA-GTYQ-NDIALIEMKKDGNKKDCELPRSI-PACVPWSP 440
Query: 373 NVKSP--TAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL--CATVM 428
            +  P  T I SG+G+    D +    L    + +I+N  CSK        +   CA   
Sbjct: 441 YLFQPNDTCIVSGWGREK--DNERVFSLQWGEVKLISN--CSKFYGNRFYEKEMECAGTY 496
Query: 429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            G  D C+GDSGGPL  +  +   Y + G+ S+G  CG    P +YT+V+ Y  WI + V
Sbjct: 497 DGSIDACKGDSGGPLVCMDANNVTY-VWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSY-SVTDNIHRVMQNILHPNYTTE 340
           CG S++  N V+TAAHC+    G     R  +    +Y S + +++ V   +++ NY  +
Sbjct: 26  CGASILDNNNVLTAAHCVD---GLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNY--D 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLN-RAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
                +D+AL+ +  P++F++ ++P  L+    +++S     +G+G         +  L 
Sbjct: 81  DFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNA-LQ 139
Query: 400 KVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           ++ L +     C + +  +I S +C T+   G+  C GDSGGPL      +     IGI 
Sbjct: 140 EIELIVHPQKQCERDQWRVIDSHIC-TLTKRGEGACHGDSGGPL------VANGAQIGIV 192
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
           S+G  C     P +YTRVS +V WI
Sbjct: 193 SFGSPCA-LGEPDVYTRVSSFVSWI 216

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG L+ P +V+TAAHC++        +  G         T   H+V  + L P +    
Sbjct: 26  CGGVLVHPQWVLTAAHCMSDDY----QIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSL 81
Query: 342 TSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
             +          HD+ LL++A P   ++ +K   L         T   SG+G ++ F  
Sbjct: 82  LKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTN 141
Query: 393 KESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
           + S  L  V L + +N+ C++     +    LCAT        C GDSGG L      +C
Sbjct: 142 RGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGAL------IC 195
Query: 452 MYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
                GITS+G  +C   N   ++T+V  +  WI  T+
Sbjct: 196 DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SP--------LGKPRYVRFGLITKLSYSVTDNIHRVMQN 331
           FC GSL+   +V++AAHC + SP        LG+  + R   +T+ ++ +   I   + +
Sbjct: 59  FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQ-TFGIEKYIPYTLYS 117
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEF----SETLKPACLNRAHNV--KSPTAIASGFG 385
           + +P+         HD+ L+++    +     S+ ++P CL    +          +G+G
Sbjct: 118 VFNPSD--------HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 169
Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGP 442
            L+   +  S  L + ++ ++ +  CS  E     +  + LCA       D CQGDSGGP
Sbjct: 170 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGP 229
Query: 443 LQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           L       C  N    + GI S+G  CG  + P +YTRV+ YV WI   + P
Sbjct: 230 LA------CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRP 275

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 16/232 (6%)
Query: 262 SMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV 321
           ++ E  FL    T +    FCGG+LI+  +V+TAAHC      K   ++ G+ +K     
Sbjct: 8   NINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDR----KNFRIKLGMHSK-KVPN 62
Query: 322 TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA 381
            D   RV +       +   T    DI L+++  PV+ S+ + P  L  +          
Sbjct: 63  EDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRI 122
Query: 382 SGFGKLNYFDTKESLRLMKVVLDIINNDTCS----KQETTLISSQLCATVMAGGKDTCQG 437
            G+G+++  +         V ++++  + C     + E    S  LCA ++ GGKDTC+G
Sbjct: 123 MGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKG 182
Query: 438 DSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           DSGGPL      +C     GI S+G   C   + PA YT+V  ++ WI + +
Sbjct: 183 DSGGPL------ICNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 94/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL       S          +G+G L 
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
              T    K    +++VV L I+    C       I+  + CA      GK  D  +GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDAAEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
           GGP     P    +  +GI S+G           YT V     WI   +  DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQKVI--DQF 257

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SP--------LGKPRYVRFGLITKLSYSVTDNIHRVMQN 331
           FC GSL+   +V++AAHC + SP        LG+  + R   +T+ ++ +   I   + +
Sbjct: 24  FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQ-TFGIEKYIPYTLYS 82
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEF----SETLKPACLNRAHNV--KSPTAIASGFG 385
           + +P+         HD+ L+++    +     S+ ++P CL    +          +G+G
Sbjct: 83  VFNPSD--------HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 134
Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGP 442
            L+   +  S  L + ++ ++ +  CS  E     +  + LCA       D CQGDSGGP
Sbjct: 135 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGP 194
Query: 443 LQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           L       C  N    + GI S+G  CG  + P +YTRV+ YV WI   + P
Sbjct: 195 LA------CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRP 240

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SP--------LGKPRYVRFGLITKLSYSVTDNIHRVMQN 331
           FC GSL+   +V++AAHC + SP        LG+  + R   +T+ ++ +   I   + +
Sbjct: 24  FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQ-TFGIEKYIPYTLYS 82
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEF----SETLKPACLNRAHNV--KSPTAIASGFG 385
           + +P+         HD+ L+++    +     S+ ++P CL    +          +G+G
Sbjct: 83  VFNPSD--------HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 134
Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGP 442
            L+   +  S  L + ++ ++ +  CS  E     +  + LCA       D CQGDSGGP
Sbjct: 135 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGP 194
Query: 443 LQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
           L       C  N    + GI S+G  CG  + P +YTRV+ YV WI   + P
Sbjct: 195 LA------CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRP 240

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG LI  ++V+TAAHC  S +     V  G            I  V++ I HP Y ++ 
Sbjct: 30  CGGFLIREDFVLTAAHCSGSKI----QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKT 85
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKL----NYFDTKES 395
            S  +DI LLK+    + S  +KP  L R +    P  +   +G+GKL     Y DT   
Sbjct: 86  IS--NDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDT--- 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
             L +V L +  +  C          ++++CA      + + +GDSGGPL      +C  
Sbjct: 141 --LQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDSGGPL------VCKK 192
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              GI SYG+  G  +TP  +T+VS ++ WI  T+
Sbjct: 193 VAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTM 225

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGGSLI   +VMTAAHC+ S   +   V  G     +    + I  V    +H  + ++ 
Sbjct: 30  CGGSLIRQGWVMTAAHCVDSA--RTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDD 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESLRL 398
            +  +DIALL++      +  ++ A L  ++ +    +P  I +G+GK +      S  L
Sbjct: 88  VAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYI-TGWGKTS-TGGPLSDSL 145
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            +  L  +++ TCS      +T+ ++ +CA    G    C GDSGGPL   +     Y +
Sbjct: 146 KQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNCQVNG--SYYV 201
Query: 456 IGITSY--GRQCGHANTPAIYTRVSYYVPWI 484
            G+TS+     C  +  P ++TRVS Y+ W+
Sbjct: 202 HGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLS--YSVTDNIHRVMQNILHPNYT 338
           +CG  L+ P +++TAAHC      K   VR G  + LS  Y     + + +++I HP Y+
Sbjct: 26  YCGAVLVHPQWLLTAAHCRK----KVFRVRLGHYS-LSPVYESGQQMFQGVKSIPHPGYS 80
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
             G S  +D+ L+K+   +  ++ ++P  ++          + SG+G            L
Sbjct: 81  HPGHS--NDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVL 138
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
             + + +++   C       I   +       G+D+CQGDSGGP+      +C  ++ G+
Sbjct: 139 QCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQGDSGGPV------VCNGSLQGL 192
Query: 459 TSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
            S+G   C   N P +YT +  +  WI  T+
Sbjct: 193 VSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 32/215 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM-QNILHPNYTT 339
           +CGGSLI   +++TAAHC+   +    Y+  G   +       N  R++  ++ +P+   
Sbjct: 29  WCGGSLIDNKWILTAAHCVHDAVSVVVYL--GSAVQYEGEAVVNSERIISHSMFNPD--- 83
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-------NRAHNVKSPTAIASGFGKLNYFDT 392
              +  +D+AL+KI P VE+++ ++P  L       N+  N+    A  SG+G+ N    
Sbjct: 84  ---TYLNDVALIKI-PHVEYTDNIQPIRLPSGEELNNKFENI---WATVSGWGQSN---- 132
Query: 393 KESLRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
            +++ L      +I+ND C+++     ++ S +C    + GK  C GDSGGP   ++ D 
Sbjct: 133 TDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDT-SDGKSPCFGDSGGPF--VLSDK 189
Query: 451 CMYNIIGITSYGRQCG-HANTPAIYTRVSYYVPWI 484
            +  +IG+ S+    G  +  P  ++RV+ Y+ WI
Sbjct: 190 NL--LIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+L + + V+TAAHC++           G +  L  S    + R  + +  P +T E
Sbjct: 26  FCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGFTKE 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +   D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K
Sbjct: 85  --TYGKDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLK 137
Query: 401 VVLDIINNDTCSKQETTLI--SSQLCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-I 456
             +  +++  C    + ++  +  +CA     GG DTCQGDSGGP+     D     I +
Sbjct: 138 ANVPFVSDAACRSSSSFILVANEMICAGYPDTGGVDTCQGDSGGPM--FRKDNADEWIQV 195
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
           GI S+G  C     P +YT VS +   I
Sbjct: 196 GIVSWGYGCARPGYPGVYTEVSTFASAI 223

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +FC G+LI+  +V+TAAHC  +       ++ G+ +K   +  +      +  + PN   
Sbjct: 24  FFCSGTLINEEWVLTAAHCDNTNF----QMKLGVHSKKVLNEDEQTRNPKEKFICPNKKN 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
           +      DI L+K+   V  SE + P  L  +           G+G +            
Sbjct: 80  DEVLD-KDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPY 138
Query: 400 KVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
              ++++++  C      L++    LCA ++ GGKDTC GDSGGPL      +C     G
Sbjct: 139 CAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPL------ICNGQFQG 192
Query: 458 ITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
           I S+G   CG    P +YT+V  Y  WI
Sbjct: 193 IVSFGAHPCGQGLKPGVYTKVFDYNHWI 220

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+ P +V+TAAHC+   + + R V  GL T  S  +T +I   +Q   HP Y   
Sbjct: 25  LCGGVLVHPKWVLTAAHCLAQRMAQLRLV-LGLHTLDSPGLTFHIKAAIQ---HPRYKPV 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFDTKESLRL 398
              + +D+ALL++   V+ S T++P  L     V +     S  G+G L +   + S  L
Sbjct: 81  PALE-NDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWG-LTHQGGRLSRVL 138
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN- 454
            ++ L +++   C+       +L  S +C    +  +  C+GDSGGPL      +C    
Sbjct: 139 RELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPL------VCGKGR 192
Query: 455 -IIGITSY-GRQCGHANTPAIYTRVSYYVPWI 484
            + G+ S+  R C     P + T V+ YV WI
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 39/257 (15%)
Query: 272 GGTMKDVKWF----------CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLI--TKLSY 319
           GG+  D+K F           GG+LI+  +V+TAAH +        YV    +  ++L+ 
Sbjct: 85  GGSDADIKNFPWQVFFDNPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQTSRLAK 144
Query: 320 SVTDNIHRVMQNILHPNY----TTEGTSQY-HDIALLKIAPPVEFSETLKPACL---NRA 371
           S       V    +HP +      EG + + +DIAL+++  PV+   T+ P CL   +  
Sbjct: 145 SKMLTPEHV---FIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD 201
Query: 372 HNV-KSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM-- 428
           +N+      + SG+G+    D   ++RL    L +     C + +    ++   A V   
Sbjct: 202 YNLMDGDLGLISGWGRTEKRD--RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTP 259
Query: 429 ----AGGK---DTCQGDSGGPLQTIMP-DLCMYNIIGITSYGRQCGHANTPAIYTRVSYY 480
               AGG+   D+C+GDSGG      P D   +   G+ S+G QCG   T  +YTRV  Y
Sbjct: 260 NMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNY 316
Query: 481 VPWIVHTVWPDQFPNSS 497
           V WI+ T+  +  P   
Sbjct: 317 VDWIMKTMQENSTPRED 333

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 91/210 (43%), Gaps = 22/210 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG+LI+  +V+TA HC    +     +  G+   L     D + R  +       T  
Sbjct: 24  LCGGTLINQEWVLTARHCDRGNM----RIYLGM-HNLKVLNKDALRRFPKEKYFCLNTRN 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS-----GFGKLNYFDTKES 395
            T    DI L+++  PV  S  + P  L       +P ++ S     G+G +   +    
Sbjct: 79  DTIWDKDIMLIRLNRPVRNSAHIAPLSL-----PSNPPSVGSVCRIMGWGTITSPNATLP 133
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
                  ++I++   C      L ++ LCA ++ GGKDTC+GDSGGPL      +C    
Sbjct: 134 DVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTCKGDSGGPL------ICNGQF 187
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            GI S G   C     P IYT+V  Y  WI
Sbjct: 188 QGILSVGGNPCAQPRKPGIYTKVFDYTDWI 217

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+LI+  +V+TAAHC    +     ++ G+ +K   +  + I RV +       T   
Sbjct: 28  CAGALINREWVLTAAHCDRRNI----RIKLGMHSKNIRNEDEQI-RVPRGKYFCLNTKFP 82
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLN---YFDTKESLR 397
                DI L+++  PV +S  + P  L +R+  V S   I  G+GK++   Y D      
Sbjct: 83  NGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIM-GWGKISTTTYPDVPHCTN 141
Query: 398 LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           +      I+ +  C          S  LCA ++ GG+DTC GDSGGPL      +C   +
Sbjct: 142 IF-----IVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPL------ICNGEM 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            GI + G + CG    PA+YT+V  Y  WI
Sbjct: 191 HGIVAGGSEPCGQHLKPAVYTKVFDYNNWI 220

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+L + + V+TAAHC++           G +  L  S    + R  + +  P Y   G
Sbjct: 22  CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
                D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K 
Sbjct: 81  ----KDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI-IGI 458
            +  +++  C S     L++++ +CA    GG DTCQGDSGGP+     D     I +GI
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYDTGGVDTCQGDSGGPM--FRKDNADEWIQVGI 189
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIV 485
            S+G  C       +YT VS +   I 
Sbjct: 190 VSWGEGCARKGKYGVYTEVSTFASAIA 216

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           + CGG+LI+ ++V+TAAHC ++       + FG+ +K   +  +      +    PN   
Sbjct: 24  FLCGGTLINQDWVVTAAHCDSNNF----QLLFGVHSKKILNEDEQTRDPKEKFFCPNRKK 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
           +      DI L+K+   V  SE + P  L  +           G+GK     TKE    +
Sbjct: 80  DDEVD-KDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSVCRIMGWGKT--IPTKEIYPDV 136
Query: 400 K--VVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
                ++I+++  C    +   + ++ LCA ++ GG+DTC  DSGGPL      +C    
Sbjct: 137 PHCANINILDHAVCRTAYSWRQVANTTLCAGILQGGRDTCHFDSGGPL------ICNGIF 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            GI S+G   CG    P +YT+V  Y+ WI
Sbjct: 191 QGIVSWGGHPCGQPGEPGVYTKVFDYLDWI 220

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 11/206 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+L + + V+TAAHC++           G +  L  S    + R  + +  P +T E
Sbjct: 26  FCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGFTKE 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +   D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K
Sbjct: 85  --TYGKDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLK 137
Query: 401 VVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
             +  +++  C    + ++  +  +CA      +DTCQGDSGGP+     +   +  +GI
Sbjct: 138 ANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFR-KDNADEWVQVGI 196
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            S+G  C       +YT VS +   I
Sbjct: 197 VSWGEGCARKGKYGVYTEVSTFASAI 222

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
Query: 282 CGGSLISPNYVMTAAHC-ITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           CGG LI P +V+TAAHC      G+   V  G  +      +     + + I     T++
Sbjct: 28  CGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSD 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI-ASGFGKLNYFDTKESLRLM 399
              Q +DI L+K+    + ++ +K   +    +++S T    +G+G  +    + S  L 
Sbjct: 88  --PQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLR 145
Query: 400 KVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           +V + +++   C+ Q     +  +    +CA    G KD+C+GD+GGPL      +C   
Sbjct: 146 EVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPL------ICKGV 199
Query: 455 IIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTVWP 490
              I S G +CG A  P IYT ++  Y  WI   + P
Sbjct: 200 FHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVP 236

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+ P +V+TAAHC+   + + R V  GL T  S  +T +I   +Q   HP Y   
Sbjct: 25  LCGGVLVHPKWVLTAAHCLAQRMAQLRLV-LGLHTLDSPGLTFHIKAAIQ---HPRYKPV 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFDTKESLRL 398
              + +++ALL++   V+ S T++P  L     V +     S  G+G L +   + S  L
Sbjct: 81  PALE-NNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWG-LTHQGGRLSRVL 138
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN- 454
            ++ L +++   C+       +L  S +C    +  +  C+GDSGGPL      +C    
Sbjct: 139 RELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPL------VCGKGR 192
Query: 455 -IIGITSY-GRQCGHANTPAIYTRVSYYVPWI 484
            + G+ S+  R C     P + T V+ YV WI
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G LI  N+VMTAAHC     G+   V  G   K     T     V +   HP Y  + 
Sbjct: 30  CSGFLIRRNFVMTAAHCA----GRSITVLLGAHNKKVKEDTWQKLEVEKQFPHPKY--DD 83
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRLM 399
               +DI LLK+      +  +    ++   N   P  +  A G+G+ N  +   S  L 
Sbjct: 84  RLVLNDIMLLKLKEKANLTLGVGTLPISAKSNSIPPGRVCRAVGWGRTN-VNEPPSDTLQ 142
Query: 400 KVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +V + I++   C   E      QLC       ++  +GDSGGPL      LC     GI 
Sbjct: 143 EVKMRILDPQACKHFEDFHQEPQLCVGNPKKIRNVYKGDSGGPL------LCAGIAQGIA 196
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
           SY  +  +A  P+++TR+S+Y PWI
Sbjct: 197 SYVLR--NAKPPSVFTRISHYRPWI 219

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN 336
           D K  C G+LI+ ++V+TAAHC    L K   V  G  +      T  I  V +   +P 
Sbjct: 21  DRKTICAGALIAKDWVLTAAHC---NLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPC 77
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKL-NYFDTK 393
           Y  +  ++  D+ LL++    + ++ +    L  +  +VK  T    +G+G+  N     
Sbjct: 78  Y--DPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWS 135
Query: 394 ESLRLMKVVLDIINNDTCSKQE-----TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
           ++LR  +V + II+   C+ +        +  + +CA  + GG+D+C GDSG PL     
Sbjct: 136 DTLR--EVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL----- 188
Query: 449 DLCMYNIIGITSYG--RQCGHANTPAIYTRVS-YYVPWIVHTV 488
            LC     G+TS+G   +CG    P +Y  +S  ++ WI+ T+
Sbjct: 189 -LCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN 336
           D K  C G+LI+ ++V+TAAHC    L K   V  G  +      T  I  V +   +P 
Sbjct: 21  DRKTICAGALIAKDWVLTAAHC---NLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPC 77
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKL-NYFDTK 393
           Y  +  ++  D+ LL++    + ++ +    L  +  +VK  T    +G+G+  N     
Sbjct: 78  Y--DPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWS 135
Query: 394 ESLRLMKVVLDIINNDTCSKQE-----TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
           ++LR  +V + II+   C+ +        +  + +CA  + GG+D+C GDSG PL     
Sbjct: 136 DTLR--EVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL----- 188
Query: 449 DLCMYNIIGITSYG--RQCGHANTPAIYTRVS-YYVPWIVHTV 488
            LC     G+TS+G   +CG    P +Y  +S  ++ WI+ T+
Sbjct: 189 -LCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+L + + V+TAAHC++           G +  L  S    + R  + +  P Y   G
Sbjct: 22  CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
                D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K 
Sbjct: 81  ----KDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-IG 457
            +  +++  C S     L++++ +CA     GG DTCQGDSGGP+     D     I +G
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPM--FRKDNADEWIQVG 189
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           I S+G  C     P +YT VS +   I 
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
           MA V FL+E    +     CGG L+  ++V+TAAHC  S +     V  G         T
Sbjct: 15  MAFVQFLQEKSRKR-----CGGILVRKDFVLTAAHCQGSSIN----VTLGAHNIKEQERT 65
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS 382
                V + I HP Y  +  S  +DI LL++    +++  ++P  L  +     P  + S
Sbjct: 66  QQFIPVKRPIPHPAYNPKNFS--NDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCS 123
Query: 383 --GFGKLNYFDTKESLRLMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGD 438
             G+G ++      +L+  +V+L +  +  C +        ++++C       +   +GD
Sbjct: 124 VAGWGYVSMSTLATTLQ--EVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGD 181
Query: 439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           SGGPL      +C     GI SYG + G    P +Y +VS+++PWI  T+
Sbjct: 182 SGGPL------VCKDVAQGILSYGNKKG--TPPGVYIKVSHFLPWIKRTM 223

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+L + + V+TAAHC++           G +  L  S    + R  + +  P +T E 
Sbjct: 22  CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGFTKE- 79
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
            +   D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K 
Sbjct: 80  -TYGKDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 133
Query: 402 VLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
            +  +++  C    + ++  +  +CA      +DTCQGDSGGP+     +   +  +GI 
Sbjct: 134 NVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFR-KDNADEWVQVGIV 192
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
           S+G  C       +YT VS +   I
Sbjct: 193 SWGEGCARKGKYGVYTEVSTFASAI 217

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+L + + V+TAAHC++           G +  L       + R  + +  P Y   G
Sbjct: 22  CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSGAAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
                D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K 
Sbjct: 81  ----KDWALIKLAQPIN-QPTLKIA-TTTAYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-IG 457
            +  +++  C S     L++++ +CA     GG DTCQGDSGGP+     D     I +G
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPM--FRKDNADEWIQVG 189
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           I S+G  C     P +YT VS +   I 
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
           MA V FL+E    +     CGG L+  ++V+TAAHC  S +     V  G         T
Sbjct: 15  MAFVQFLQEKSRKR-----CGGILVRKDFVLTAAHCQGSSIN----VTLGAHNIKEQERT 65
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS 382
                V + I HP Y  +  S  ++I LL++    +++  ++P  L  +     P  + S
Sbjct: 66  QQFIPVKRPIPHPAYNPKNFS--NNIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCS 123
Query: 383 --GFGKLNYFDTKESLRLMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGD 438
             G+G ++      +L+  +V+L +  +  C +        ++++C       +   +GD
Sbjct: 124 VAGWGYVSMSTLATTLQ--EVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGD 181
Query: 439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           SGGPL      +C     GI SYG + G    P +Y +VS+++PWI  T+
Sbjct: 182 SGGPL------VCKDVAQGILSYGNKKG--TPPGVYIKVSHFLPWIKRTM 223

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 19/210 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG L+  ++V+TAAHC  S +     V  G         T       + I HP Y    
Sbjct: 29  CGGFLVREDFVLTAAHCWGSNIN----VTLGAHNIQRRENTQQHITARRAIRHPQYNQRT 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRLM 399
               +DI LL+++  V  +  + P  L RA     P  +   +G+G+++     ++LR  
Sbjct: 85  IQ--NDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLR-- 140
Query: 400 KVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
           +V L +  +  C +   +     Q+C       K   +GDSGGPL      LC     GI
Sbjct: 141 EVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPL------LCNNVAHGI 194
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            SYG+  G    P ++TRVS ++PWI  T+
Sbjct: 195 VSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 19/210 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG L+  ++V+TAAHC  S +     V  G         T       + I HP Y    
Sbjct: 29  CGGFLVREDFVLTAAHCWGSNIN----VTLGAHNIQRRENTQQHITARRAIRHPQYNQRT 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRLM 399
               +DI LL+++  V  +  + P  L RA     P  +   +G+G+++     ++LR  
Sbjct: 85  IQ--NDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLR-- 140
Query: 400 KVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
           +V L +  +  C +   +     Q+C       K   +GDSGGPL      LC     GI
Sbjct: 141 EVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPL------LCNNVAHGI 194
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            SYG+  G    P ++TRVS ++PWI  T+
Sbjct: 195 VSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+L + + V+TAAHC++           G +  L  S    + R  + +  P Y   G
Sbjct: 22  CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
                D AL+K+A P+    TLK A    A+N    T   +G+G  N     +   L+K 
Sbjct: 81  ----KDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-IG 457
            +  +++  C S     L++++ +CA     GG D CQGDSGGP+     D     I +G
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDPCQGDSGGPM--FRKDNADEWIQVG 189
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIV 485
           I S+G  C     P +YT VS +   I 
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLIT-KLSYSVTDNIHRVMQNILHPNYTT 339
           FC G L+ P +V++AAHC  +       +  GL + +        +     ++ HP Y  
Sbjct: 25  FCSGVLVHPQWVLSAAHCFQNSY----TIGLGLHSLEADQEPGSQMVEASLSVRHPEYNR 80
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
              +  +D+ L+K+   V  S+T++   +         + + SG+G L   + +    L 
Sbjct: 81  PLLA--NDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLL--ANGRMPTVLQ 136
Query: 400 KVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            V + +++ + CSK    L   S  CA      KD+C GDSGGPL      +C   + G+
Sbjct: 137 CVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPL------ICNGYLQGL 190
Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
            S+G+  CG    P +YT +  +  WI  TV
Sbjct: 191 VSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV 221

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG LI  ++V+TAAHC  S +     V  G         T     V + I HP Y  + 
Sbjct: 29  CGGFLIQDDFVLTAAHCWGSSIN----VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKN 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
            S  +DI LL++    + +  ++P  L  N+A      T   +G+G+      K S  L 
Sbjct: 85  FS--NDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQ 141
Query: 400 KVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
           +V + +  +  C         S  +LC       K + +GDSGGPL      +C     G
Sbjct: 142 EVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL------VCNKVAQG 195
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I SYGR  G    P   T+VS +V WI  T+
Sbjct: 196 IVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG LI  ++V+TAAHC  S +     V  G         T     V + I HP Y  + 
Sbjct: 29  CGGFLIRDDFVLTAAHCWGSSIN----VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKN 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
            S  +DI LL++    + +  ++P  L  N+A      T   +G+G+      K S  L 
Sbjct: 85  FS--NDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQ 141
Query: 400 KVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
           +V + +  +  C         S  +LC       K + +GDSGGPL      +C     G
Sbjct: 142 EVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL------VCNKVAQG 195
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I SYGR  G    P   T+VS +V WI  T+
Sbjct: 196 IVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 405 IINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR 463
           +++N +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI S+G 
Sbjct: 17  VLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPV------VCNGQLQGIVSWGY 70
Query: 464 QCGHANTPAIYTRVSYYVPWIVHTV 488
            C   N P +YT+V  YV WI  T+
Sbjct: 71  GCAQKNKPGVYTKVCNYVNWIQQTI 95

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
           GG+L+   +++TAAH +  P          L   L ++  + +     H + +  +HP+Y
Sbjct: 25  GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 83
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
             + +  +  DIALL++   V     L P CL  N            SGFG +   + K 
Sbjct: 84  RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 140
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
           +  L  V L + N   C      K    + S  + CA   +  +D CQGDSGG      P
Sbjct: 141 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 200
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   +   GI S+G  C        YT+V  YV WI
Sbjct: 201 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 234

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITS---PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
           FCGGSL+   +++TA  C +S   PL     V  G + +       ++ RV      P  
Sbjct: 23  FCGGSLVKEQWILTARQCFSSCHMPL-TGYEVWLGTLFQNPQHGEPSLQRV------PVA 75
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
                     + LLK+   V  ++ +   CL     V  P       G      T     
Sbjct: 76  KMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTV 135
Query: 398 LMKVVLDIINNDTCS-KQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L   +L++I+N  C+ K    +  S++C   +      C+GD GGPL     +   + + 
Sbjct: 136 LNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHN--SWVLE 193
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
           GI    R C  +  PA++TRVS +V WI
Sbjct: 194 GIIIPNRVCARSRWPAVFTRVSVFVDWI 221

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
           GG+L+   +++TAAH +  P          L   L ++  + +     H + +  +HP+Y
Sbjct: 114 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 172
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
             + +  +  DIALL++   V     L P CL  N            SGFG +   + K 
Sbjct: 173 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 229
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
           +  L  V L + N   C      K    + S  + CA   +  +D CQGDSGG      P
Sbjct: 230 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 289
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   +   GI S+G  C        YT+V  YV WI
Sbjct: 290 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 323

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
           GG+L+   +++TAAH +  P          L   L ++  + +     H + +  +HP+Y
Sbjct: 182 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 240
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
             + +  +  DIALL++   V     L P CL  N            SGFG +   + K 
Sbjct: 241 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 297
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
           +  L  V L + N   C      K    + S  + CA   +  +D CQGDSGG      P
Sbjct: 298 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 357
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   +   GI S+G  C        YT+V  YV WI
Sbjct: 358 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 391

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CG SL+S    ++A+HC+   L     V  GL  +   S T   + V    +H NY    
Sbjct: 29  CGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTAN-VDSYTMHENYGAGT 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
            S  +DIA+L +A  +     ++ A L  N  ++    T + SG+G+ +  +    + L 
Sbjct: 88  ASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDI-LQ 146
Query: 400 KVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           K  + +I    C+          +  + +C    AG    C GDSGGPL    PD     
Sbjct: 147 KSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLN--CPDGGTR- 203
Query: 455 IIGITSYGRQCGHA----NTPAIYTRVSYYVPWI 484
           ++G+TS+    G      + P++YTRVS Y+ WI
Sbjct: 204 VVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 405 IINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR 463
           ++++ +C S     +  + +C   + GGKD+CQGDSGGP+      +C   + GI S+G 
Sbjct: 17  VLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIVSWGY 70
Query: 464 QCGHANTPAIYTRVSYYVPWIVHTV 488
            C   N P +YT+V  YV WI  T+
Sbjct: 71  GCAQKNKPGVYTKVCNYVNWIQQTI 95

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
           GG+L+   +++TAAH +  P          L   L ++  + +     H + +  +HP+Y
Sbjct: 114 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 172
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
             + +  +  DIALL++   V     L P CL  N            SGFG +   + K 
Sbjct: 173 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 229
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
           +  L  V L + N   C      K    + S  + CA   +  +D CQGD+GG      P
Sbjct: 230 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDP 289
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +   +   GI S+G  C        YT+V  YV WI
Sbjct: 290 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 323

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 21/211 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LI P++V+TAAHC+     +   V  G     +   T     V Q  L+ NY  E
Sbjct: 28  FCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLN-NYDAE 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
             ++ +DI L++++ P   S ++    L +           +A G+G++   D    + L
Sbjct: 87  --NKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQV-L 143
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            ++ + ++    C           +C  V       C GDSGGPL      +C   I GI
Sbjct: 144 QELNVTVVTF-FCRPHN-------ICTFVPRRKAGICFGDSGGPL------ICDGIIQGI 189
Query: 459 TSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
            S+    C     P  +TRV+ YV WI  T+
Sbjct: 190 DSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 368
           HP Y         DIAL+K+  PV FS+ + P CL
Sbjct: 87  HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCL 120

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
            CG SLIS  +V+TAAHC+  P     +    L+ ++         R ++ I       +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 368
           HP Y  +      DIALLK+  P+E S+ + P CL
Sbjct: 87  HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCL 120

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTI 446
           N   T E  +L +  L I++   C K   + I+  + CA   A G D+C GDSGGPL  +
Sbjct: 1   NALKTPE--KLQQAALPIVSEADCKKSWGSKITDVMTCAG--ASGVDSCMGDSGGPL--V 54
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                ++ + GI S+G      +TPA+Y+RV+  +PW+
Sbjct: 55  CQKDGVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLIS ++V+TAAHC    +     V  G   + S      + ++ Q   +P +   
Sbjct: 23  FCGGSLISEDWVVTAAHC---GVKTSDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNM- 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 389
             +  +DI LLK+A P +FSET+   CL    +   P  +   +G+GK  Y
Sbjct: 79  -FTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTGWGKTKY 128

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 397 RLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           RL +  L +++N  C K   T I  + +CA   A G  +C GDSGGPL  +      + +
Sbjct: 6   RLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTL 61
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GI S+G      +TP +Y RV+  V W+  T+
Sbjct: 62  VGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTI 446
           N   T E  +L +  L I++   C K   + I+  + CA   A G D+C GDSGGPL  +
Sbjct: 1   NALKTPE--KLQQAALPIVSEADCKKSWGSKITDVMTCAG--ASGVDSCMGDSGGPL--V 54
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
                ++ + GI S+G      +TP +Y+RV+  +PW+
Sbjct: 55  CQKDGVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 397 RLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           RL +  L +++N  C K   T I  + +CA   A G  +C GDSGGPL  +      + +
Sbjct: 5   RLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTL 60
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GI S+G      +TP +Y RV+  V W+  T+
Sbjct: 61  VGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 93

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLIS ++V+TAAHC    +     V  G   + S      + ++ Q   +P +   
Sbjct: 26  FCGGSLISEDWVVTAAHC---GVKTSDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNM- 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 389
             +  +DI LLK+A P +FSET+    L    +   P  +   +G+GK  Y
Sbjct: 82  -FTVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTGWGKTKY 131

>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-D1 (Smipp-S-D1) Length = 235

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 273 GTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
           G + D K FCGGS+++ N+V+TAA C+         + +G     SY  T     + + I
Sbjct: 17  GVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYG----SSYRTTKGTSVMAKKI 72
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSE--TLKPACLNRAHNVKSPTAI-ASGFGKLNY 389
               Y     +  ++ A+++   P++  +  T K    +  ++ +  T++  SG+G  N+
Sbjct: 73  YIVRY--HPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNF 130
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQETTLISSQLC--ATVMAGGK-DTC---QGDSGGPL 443
              + S  LM+    +++  +C +Q   + + +        AGG+ D      GD+G P 
Sbjct: 131 KSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPA 190
Query: 444 QTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYV 481
                 +    ++G+ SY      +  P+++ RV YYV
Sbjct: 191 ------VQNGTLVGVASYISSM-PSEFPSVFLRVGYYV 221

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+++S  +V+TAAHC T    K   +      K+S         +   + HPNY   G
Sbjct: 45  CMGAVVSEYFVLTAAHCFTVD-DKEHSI------KVSVGGEKRDLEIEVVLFHPNYNING 97
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
             +        +D+AL+K+   +++ +T++P CL       RA  +   T       +L 
Sbjct: 98  KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 157
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
                   F ++E  +L +  + I N D   +C +         +   IS  +    +  
Sbjct: 158 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 217
Query: 431 G-------KDTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
           G        +TC+GDSGGPL  I+     +  +G+ S+G
Sbjct: 218 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 254

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+++S  +V+TAAHC T    +          K+S         +   + HPNY   G
Sbjct: 252 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 304
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
             +        +D+AL+K+   +++ +T++P CL       RA  +   T       +L 
Sbjct: 305 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 364
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
                   F ++E  +L +  + I N D   +C +         +   IS  +    +  
Sbjct: 365 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 424
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
           G        +TC+GDSGGPL  I+     +  +G+ S+G
Sbjct: 425 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 461

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+++S  +V+TAAHC T    +          K+S         +   + HPNY   G
Sbjct: 244 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 296
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
             +        +D+AL+K+   +++ +T++P CL       RA  +   T       +L 
Sbjct: 297 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 356
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
                   F ++E  +L +  + I N D   +C +         +   IS  +    +  
Sbjct: 357 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 416
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
           G        +TC+GDSGGPL  I+     +  +G+ S+G
Sbjct: 417 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 453

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+++S  +V+TAAHC T    +          K+S         +   + HPNY   G
Sbjct: 486 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 538
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
             +        +D+AL+K+   +++ +T++P CL       RA  +   T       +L 
Sbjct: 539 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 598
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
                   F ++E  +L +  + I N D   +C +         +   IS  +    +  
Sbjct: 599 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 658
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
           G        +TC+GDSGGPL  I+     +  +G+ S+G
Sbjct: 659 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 695

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+++S  +V+TAAHC T    +          K+S         +   + HPNY   G
Sbjct: 477 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 529
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
             +        +D+AL+K+   +++ +T++P CL       RA  +   T       +L 
Sbjct: 530 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 589
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
                   F ++E  +L +  + I N D   +C +         +   IS  +    +  
Sbjct: 590 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 649
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
           G        +TC+GDSGGPL  I+     +  +G+ S+G
Sbjct: 650 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 686

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           C G+++S  +V+TAAHC T    +          K+S         +   + HPNY   G
Sbjct: 496 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 548
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
             +        +D+AL+K+   +++ +T++P CL       RA  +   T       +L 
Sbjct: 549 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 608
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
                   F ++E  +L +  + I N D   +C +         +   IS  +    +  
Sbjct: 609 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 668
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
           G        +TC+GDSGGPL  I+     +  +G+ S+G
Sbjct: 669 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 705

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCG +LI+PN+VM+AAHC+ +   +   V  G         T  +  V Q I    Y  +
Sbjct: 25  FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFEDGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
             +  +DI +L++      +  ++    PA   R  N      +A G+G L       S+
Sbjct: 82  PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            L ++ + ++ +  C +       S +C  V       C GDSG PL      +C   I 
Sbjct: 140 -LQELNVTVVTS-LCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           GI S+ R  C     P  +  V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCG +LI+PN+VM+AAHC+ +   +   V  G         T  +  V Q I    Y  +
Sbjct: 25  FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFEDGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
             +  +DI +L++      +  ++    PA   R  N      +A G+G L       S+
Sbjct: 82  PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            L ++ + ++ +  C +       S +C  V       C GDSG PL      +C   I 
Sbjct: 140 -LQELNVTVVTS-LCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           GI S+ R  C     P  +  V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCG +LI+PN+VM+AAHC+ +   +   V  G         T  +  V Q I    Y  +
Sbjct: 25  FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFENGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
             +  +DI +L++      +  ++    PA   R  N      +A G+G L       S+
Sbjct: 82  PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            L ++ + ++    C +       S +C  V       C GDSG PL      +C   I 
Sbjct: 140 -LQELNVTVV-TSLCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           GI S+ R  C     P  +  V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCG +LI+PN+VM+AAHC+ +   +   V  G         T  +  V Q I    Y  +
Sbjct: 25  FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFENGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
             +  +DI +L++      +  ++    PA   R  N      +A G+G L       S+
Sbjct: 82  PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            L ++ + ++    C +       S +C  V       C GDSG PL      +C   I 
Sbjct: 140 -LQELNVTVV-TSLCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           GI S+ R  C     P  +  V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-I1 (Smipp-S-I1) Length = 228

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
           CGG+++S  +V+TAAHC+     KP  +     +   +         + ++    Y  E 
Sbjct: 28  CGGAILSQWFVLTAAHCVFD--QKPETIVIQYESTNLWEDPGKSDPYVSHVYLSFYRQE- 84
Query: 342 TSQYHDIALLKIAPPVEFSE-TLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTKESLRL 398
            +  +DIA+L+++ P++      KPA L +     K+ + +  SG+G     D K+   L
Sbjct: 85  -TMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDH-DL 142
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
               L +++ D C  +   +  S         G     GD+G P  T+  D     ++G+
Sbjct: 143 KSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVSLESGDAGDP--TVQQD----TLVGV 196
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            +Y  +      P ++T+V  YV WI
Sbjct: 197 AAYFPKRPEG-APEVFTKVGSYVSWI 221

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+ N+V+TAAHC  +       V  G   + S S  + I ++    +  N    
Sbjct: 26  FCGGSLINENWVVTAAHCGVT---TSDVVVAGEFDQGSSS--EKIQKLKIAKVFKNSKYN 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNY 389
             +  +DI LLK++    FS+T+   CL  A +      T + +G+G   Y
Sbjct: 81  SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCG +LI+PN+VM+AAHC+ +   +   V  G         T  +  V Q I    Y  +
Sbjct: 25  FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFENGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
             +  +DI +L++      +  ++    PA   R  N      +A G+G L       S+
Sbjct: 82  PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            L ++ + ++    C +       S +C  V       C GD G PL      +C   I 
Sbjct: 140 -LQELNVTVV-TSLCRR-------SNVCTLVRGRQAGVCFGDXGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           GI S+ R  C     P  +  V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of The Porcine Alpha Trypsin Length = 125

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      + I HPN+   
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
           G +  +DI L+K++ P   +  +    L R+        + SG+G 
Sbjct: 78  GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGN 123

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 28/176 (15%)
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK-SPTAIASGFGKLNYF 390
           I HP+ +T       DI L+K+   V  +E + P CL     V        SG+G+    
Sbjct: 178 IFHPDNSTV------DIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANL 231
Query: 391 DTKESLRLMKVVLDIINNDTCSKQ------------------ETTLISSQLCATVMAGGK 432
           +  E L+   V+L + + + C +                   +  L     CA +    +
Sbjct: 232 NFTEHLKY--VMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQE 289
Query: 433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           DTC GD+G        D   +   GI S+ + C  A    +Y RV+  + WI  T+
Sbjct: 290 DTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRTAEY-GVYVRVTSILDWIQTTI 344

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 51/224 (22%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSP--------LGKPRYVRFGLITKLSYSV---TDNIHR 327
           + FCGG+LI   +VMTAA C  S         LG     R    ++ ++S+   ++N + 
Sbjct: 23  RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYD 82
Query: 328 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEF--SETLKPACLNRAHNVKSPTAIASGFG 385
             QN+             +D+ LL++        S T+ P  L  A          +G+G
Sbjct: 83  PQQNL-------------NDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
Query: 386 KLNYFDTKESLRLMK----VVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGG 441
                  +   RL +    V + +   D C         + +C  V+      C GD G 
Sbjct: 130 S-----QRSGGRLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGICNGDGGT 177
Query: 442 PLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
           PL      +C     G+ S+    CG    P  +TRV+ +  WI
Sbjct: 178 PL------VCEGLAHGVASFSLGPCGRG--PDFFTRVALFRDWI 213

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 51/224 (22%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSP--------LGKPRYVRFGLITKLSYSV---TDNIHR 327
           + FCGG+LI   +VMTAA C  S         LG     R    ++ ++S+   ++N + 
Sbjct: 23  RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYD 82
Query: 328 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEF--SETLKPACLNRAHNVKSPTAIASGFG 385
             QN+             +D+ LL++        S T+ P  L  A          +G+G
Sbjct: 83  PQQNL-------------NDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
Query: 386 KLNYFDTKESLRLMK----VVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGG 441
                  +   RL +    V + +   D C         + +C  V+      C GD G 
Sbjct: 130 S-----QRSGGRLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGICNGDQGT 177
Query: 442 PLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
           PL      +C     G+ S+    CG    P  +TRV+ +  WI
Sbjct: 178 PL------VCEGLAHGVASFSLGPCGRG--PDFFTRVALFRDWI 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	2e-70
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	5e-14
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-63
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-14
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	2e-13
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	2e-61
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	5e-14
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	5e-11
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	2e-61
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	8e-14
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	8e-10
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	3e-61
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	3e-13
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	1e-09
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	4e-61
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	1e-14
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	3e-11
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	5e-61
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	2e-13
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	4e-12
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	4e-60
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	2e-12
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	1e-09
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	9e-60
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	1e-13
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	6e-13
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	1e-59
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	2e-11
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	2e-08
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	1e-59
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	1e-11
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	1e-08
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	2e-59
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	4e-12
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	5e-10
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	2e-59
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	4e-12
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	3e-10
1aut_C	250	Activated protein C; serine proteinase, plasma cal	2e-59
1aut_C	250	Activated protein C; serine proteinase, plasma cal	5e-13
1aut_C	250	Activated protein C; serine proteinase, plasma cal	5e-11
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	3e-59
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	4e-13
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	3e-59
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	2e-12
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	4e-59
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	2e-13
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	3e-11
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	7e-59
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	3e-11
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	4e-09
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	8e-59
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	2e-12
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	1e-09
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-58
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	5e-14
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	5e-08
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	1e-58
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	6e-11
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	3e-10
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	2e-58
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	5e-13
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	9e-10
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	3e-58
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	1e-11
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	3e-11
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	8e-58
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	8e-11
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	1e-57
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-12
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	4e-11
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	1e-57
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	5e-14
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	9e-11
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	2e-57
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	3e-11
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	5e-10
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	2e-57
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	4e-12
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	7e-09
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	2e-57
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	4e-12
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	6e-09
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	2e-57
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	1e-11
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	4e-10
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	3e-57
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-12
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	5e-11
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	1e-56
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	1e-11
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	1e-09
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	1e-56
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	5e-13
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	5e-09
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-56
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	4e-11
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	8e-10
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	3e-56
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	3e-13
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	3e-10
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	4e-56
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	7e-11
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	2e-09
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	4e-56
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	5e-12
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	4e-56
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-13
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	1e-10
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	6e-56
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	3e-11
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	3e-10
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	7e-56
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	3e-12
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	4e-10
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	9e-56
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	1e-12
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	1e-09
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	1e-55
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	2e-09
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	2e-07
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-55
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	2e-12
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-11
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	2e-55
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	2e-13
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	5e-11
1md8_A	329	C1R complement serine protease; innate immunity, a	2e-55
1md8_A	329	C1R complement serine protease; innate immunity, a	9e-13
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	2e-55
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	7e-10
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	6e-07
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	2e-55
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	8e-11
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	3e-09
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	4e-55
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	5e-13
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	8e-11
2aiq_A	231	Protein C activator; snake venom serine proteinase	5e-55
2aiq_A	231	Protein C activator; snake venom serine proteinase	6e-10
2aiq_A	231	Protein C activator; snake venom serine proteinase	7e-09
1gpz_A	399	Complement C1R component; hydrolase, activation, i	1e-54
1gpz_A	399	Complement C1R component; hydrolase, activation, i	1e-12
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-54
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-10
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	2e-09
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	1e-54
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	7e-10
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	2e-09
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	1e-54
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	2e-09
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	3e-09
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	1e-54
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	1e-09
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	1e-09
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	1e-54
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	2e-10
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	8e-10
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-54
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	8e-11
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	4e-10
1a7s_A	225	Heparin binding protein; serine protease homolog,	2e-54
1a7s_A	225	Heparin binding protein; serine protease homolog,	9e-11
1a7s_A	225	Heparin binding protein; serine protease homolog,	2e-09
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	4e-54
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	6e-12
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	8e-09
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	5e-54
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	1e-10
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	5e-09
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	5e-54
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	4e-11
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	2e-07
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	1e-53
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	4e-11
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	4e-10
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	1e-53
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	4e-11
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	4e-08
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	2e-53
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	2e-11
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	7e-11
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	2e-53
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	4e-11
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	5e-08
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	2e-53
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	5e-09
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	2e-08
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	3e-53
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	3e-09
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	7e-08
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	3e-53
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	2e-08
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	5e-08
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	4e-53
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	4e-10
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	9e-07
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	4e-53
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	6e-11
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	1e-07
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	4e-53
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	6e-10
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	2e-07
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	6e-53
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	5e-09
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	2e-08
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	6e-53
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	3e-10
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	1e-08
1elv_A	333	Complement C1S component; trypsin-like serin prote	7e-53
1elv_A	333	Complement C1S component; trypsin-like serin prote	3e-12
1elv_A	333	Complement C1S component; trypsin-like serin prote	8e-11
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	8e-53
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-10
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-07
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	1e-52
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	7e-10
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	3e-08
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	2e-52
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	2e-10
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	2e-08
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	2e-52
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	8e-10
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	2e-09
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	3e-52
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	4e-10
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	4e-09
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	4e-52
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	4e-11
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	1e-07
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	5e-52
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	8e-15
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	9e-11
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	1e-51
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	7e-10
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	4e-08
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	2e-50
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	9e-11
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	6e-09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	7e-50
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-10
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-09
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	8e-50
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	2e-11
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	3e-06
2xrc_A	565	Human complement factor I; immune system, hydrolas	9e-50
2xrc_A	565	Human complement factor I; immune system, hydrolas	5e-10
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	8e-47
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-10
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	6e-06
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	3e-44
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	1e-11
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	6e-08
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	6e-40
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	9e-11
3hrz_D	741	Complement factor B; serine protease, glycosilated	8e-40
3hrz_D	741	Complement factor B; serine protease, glycosilated	3e-10
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	8e-35
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	2e-25
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	5e-23
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	4e-12
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	1e-10
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	5e-18
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	5e-12
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	1e-10
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	9e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	4e-05
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	1e-04
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	5e-05
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	1e-04
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  226 bits (577), Expect = 2e-70
 Identities = 75/305 (24%), Positives = 122/305 (40%), Gaps = 55/305 (18%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
           I+ G      EFP  A +G+          ++ CGGSLI+  Y++TAAHC+   ++    
Sbjct: 23  ILNGDDTVPEEFPWTAMIGYKNSSN---FEQFACGGSLINNRYIVTAAHCVAGRVL---- 75

Query: 252 KAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRF 311
              +  L  + + E     +      V+                           + +  
Sbjct: 76  -RVVGALNKVRLGEWNTATDPDCYGAVRVCVP----------------------DKPIDL 112

Query: 312 GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL--N 369
           G               + + I HP+Y      +YHDIAL+++   VEF+  ++P CL   
Sbjct: 113 G---------------IEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP 157

Query: 370 RAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK----QETTLISSQLCA 425
                        G+G+      + S    K+ + +++ + C+K        + SSQLCA
Sbjct: 158 NEEVQVGQRLTVVGWGRTE--TGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCA 215

Query: 426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
                 KD+C GDSGGPL     +   + + G+ S+G  CG    P IYT+V  Y  WI 
Sbjct: 216 GG-EKAKDSCGGDSGGPLLAERAN-QQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIE 273

Query: 486 HTVWP 490
             + P
Sbjct: 274 GNIRP 278

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 6   AAHCITS----PLGKPRYVRFGLITKLSYSVTDNIHRVMQN-----------ILHPNYTT 50
           AAHC+       +G    VR G     +        RV              I HP+Y  
Sbjct: 66  AAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD 125

Query: 51  EGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKL 98
               +YHDIAL+++   VEF+  ++P CL                G+G+ 
Sbjct: 126 GSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT 175

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  211 bits (539), Expect = 2e-63
 Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 32/250 (12%)

Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFG---LITKLSY 319
           MA + + + G +    ++ CGG++IS  Y++TAAHC+         +R G   + T+   
Sbjct: 133 MALLRYQQFGES----RFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDC 188

Query: 320 SVTDNIH---------RVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-- 368
                            + ++++H  Y        HDIALLK+   V F + +KP CL  
Sbjct: 189 RQQGRKKKCAPPVVNVGIEKHLIHEKYDA--RHIMHDIALLKLNRSVPFQKHIKPICLPI 246

Query: 369 ---NRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ-ETTLISSQLC 424
               +    +  T   +G+G     +   S  L++  + +     CS+     +  SQLC
Sbjct: 247 TDELKEKAEQISTYFVTGWGTTE--NGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLC 304

Query: 425 ATVMAGGKDTCQGDSGGPLQTIMPDLCMYN----IIGITSYG-RQCGHANTPAIYTRVSY 479
                  +D+C+GDSGGPLQ     L  Y       GI S G   CG  + P +YT V  
Sbjct: 305 VG-GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGE 363

Query: 480 YVPWIVHTVW 489
           YV WI  T+ 
Sbjct: 364 YVQWITDTMA 373

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 24/147 (16%)

Query: 99  NYFECTQYSKIQDESPIALAPALVGGVRYVKT-QCDILAMPMIIGGSRAKYGEFPHQCTQ 157
            +  C    +   E+  A          Y++   C               +    H C  
Sbjct: 44  PFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGE-------------FNGVRHFCCP 90

Query: 158 YSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGT 217
            + IQ  S +          +     C       +  G   K    P  A + + + G +
Sbjct: 91  SANIQHNSKVM------SLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFGES 144

Query: 218 MKDVKWFCGGSLISPNYVMTAAHCITS 244
               ++ CGG++IS  Y++TAAHC+  
Sbjct: 145 ----RFLCGGAMISERYILTAAHCVHG 167

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 6   AAHCITSPLGKPRYVRFG---LITKLSYSVTDNIH---------RVMQNILHPNYTTEGT 53
           AAHC+         +R G   + T+                    + ++++H  Y     
Sbjct: 161 AAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDA--R 218

Query: 54  SQYHDIALLKIAPPVEFSETLKPACL-----NRAHNVKSPTAIASGFGKL 98
              HDIALLK+   V F + +KP CL      +    +  T   +G+G  
Sbjct: 219 HIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT 268

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  200 bits (512), Expect = 2e-61
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGGSLI   +V+TAAHC      +  + +  G++     +      ++ + I+H NY  
Sbjct: 28  LCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKV 87

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLR 397
              +  HDIAL+K+  P+E++E  KP  L ++       T    +G+G       +    
Sbjct: 88  SEGN--HDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKE-KGEIQNI 144

Query: 398 LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L KV + ++ N+ C K  Q+  +    +CA    GGKD C+GDSGGPL        M+ +
Sbjct: 145 LQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVC--KHNGMWRL 202

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GITS+G  C     P +YT+V+ Y+ WI+   
Sbjct: 203 VGITSWGEGCARREQPGVYTKVAEYMDWILEKT 235

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 70.7 bits (174), Expect = 5e-14
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC      +  + +  G++     +      ++ + I+H NY     +  HDIAL+K+
Sbjct: 42  AAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGN--HDIALIKL 99

Query: 65  APPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
             P+E++E  KP  L ++       T    +G+G    
Sbjct: 100 QAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKE 137

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG+ + +GE+P Q  +            +  CGGSLI   +V+TAAHC   
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQ-----RHLCGGSLIGHQWVLTAAHCFDG 48

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  200 bits (512), Expect = 2e-61
 Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGGS+I   +++TAAHC           V  G++ +       +   V + I+H  Y  
Sbjct: 28  LCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKM 87

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLR 397
             +   +DIALLK+   V ++++ +P  L ++       T    +G+G       K    
Sbjct: 88  AESG--YDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKL-RDKIQNT 144

Query: 398 LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L K  + ++ N+ C K  +   +    +CA    GGKD C+GDSGGPL        ++++
Sbjct: 145 LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSC--KHNEVWHL 202

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GITS+G  C     P +YT V  YV WI+   
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 69.9 bits (172), Expect = 8e-14
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC           V  G++ +       +   V + I+H  Y    +   +DIALLK+
Sbjct: 42  AAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLKL 99

Query: 65  APPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
              V ++++ +P  L ++       T    +G+G    
Sbjct: 100 ETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKL 137

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG+ +  GE+P Q  +            +  CGGS+I   +++TAAHC   
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQ-----RHLCGGSIIGNQWILTAAHCFYG 48

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  200 bits (511), Expect = 3e-61
 Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 12/215 (5%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHR-VMQNILHPNY 337
            CG SL+S +++++AAHC+     +P       GL  K + +    + R + + +++P+Y
Sbjct: 25  LCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHY 84

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKES 395
                   +DIA++ +   V +++ ++P  L               +G+G + Y     +
Sbjct: 85  NRRRKD--NDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVY-QGTTA 141

Query: 396 LRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
             L +  + +++N+ C +Q  E  +  + +CA    GG D+CQGDSGGPL     +   +
Sbjct: 142 DILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMC--QENNRW 199

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + G+TS+G +C   N P +Y RVS +  WI   +
Sbjct: 200 FLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 6   AAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHR-VMQNILHPNYTTEGTSQYHDIALL 62
           AAHC+     +P       GL  K + +    + R + + +++P+Y        +DIA++
Sbjct: 39  AAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKD--NDIAMM 96

Query: 63  KIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
            +   V +++ ++P  L               +G+G + Y
Sbjct: 97  HLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVY 136

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GGS AK G +P    +          D +  CG SL+S +++++AAHC+  
Sbjct: 1   IVGGSDAKEGAWPWVVGL--------YYDDRLLCGASLVSSDWLVSAAHCVYG 45

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  200 bits (510), Expect = 4e-61
 Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 10/209 (4%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++  +++TAAHC+ +       V  G         T+    V++ I H N+   
Sbjct: 25  FCGGSIVNEKWIVTAAHCVETG--VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAA 82

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT---AIASGFGKLNYFDTKESL 396
             +  HDIALL++  P+  +  + P C+ ++ +            SG+G++ +   + +L
Sbjct: 83  INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH-KGRSAL 141

Query: 397 RLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
            L  + + +++  TC +     I++   CA    GG+D+CQGDSGGP  T +       +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGT--SFL 199

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G +C       IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+ +       V  G         T+    V++ I H N+     +  HDIALL++ 
Sbjct: 39  AAHCVETG--VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELD 96

Query: 66  PPVEFSETLKPACL-NRAHNVKSPT---AIASGFGKLNY 100
            P+  +  + P C+ ++ +            SG+G++ +
Sbjct: 97  EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH 135

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG  AK G+FP Q  +           V  FCGGS+++  +++TAAHC+ + 
Sbjct: 1   VVGGEDAKPGQFPWQVVL--------NGKVDAFCGGSIVNEKWIVTAAHCVETG 46

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  199 bits (509), Expect = 5e-61
 Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 13/216 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           + FCGG+++S  Y++TAAHC+     K   VR G          + +H V   I H  +T
Sbjct: 24  EGFCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFT 81

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNYFDTK 393
            E      DIA+L++  P+ F   + PACL   + A +      T I SGFG+ +    +
Sbjct: 82  KETYD--FDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHE-KGE 138

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           +S RL  + +  ++ ++C    + +I+    CA      +D CQGDSGGP  T   D   
Sbjct: 139 QSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDT-- 196

Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           Y + GI S+G  C       IYT+V+ ++ WI  ++
Sbjct: 197 YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+     K   VR G          + +H V   I H  +T E      DIA+L++ 
Sbjct: 40  AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYD--FDIAVLRLK 95

Query: 66  PPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNY 100
            P+ F   + PACL   + A +      T I SGFG+ + 
Sbjct: 96  TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHE 135

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG   K GE P Q     + E       + FCGG+++S  Y++TAAHC+   
Sbjct: 1   IVGGQECKDGECPWQ--ALLINEEN-----EGFCGGTILSEFYILTAAHCLYQA 47

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  197 bits (503), Expect = 4e-60
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 16/216 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG LI P +V+TAAHC           V  G  +      +     + + I     T+
Sbjct: 27  VCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTS 86

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYFDTKESLRL 398
           +  S  +DI L+K+    + ++ +K   +    +++S T    +G+G  +    + S  L
Sbjct: 87  DPQS--NDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTL 144

Query: 399 MKVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            +V + +++   C+ Q     +  +    +CA    G KD+C+GD+GGPL      +C  
Sbjct: 145 REVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPL------ICKG 198

Query: 454 NIIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTV 488
               I S G +CG A  P IYT ++  Y  WI   +
Sbjct: 199 VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC           V  G  +      +     + + I     T++  S  +DI L+K+
Sbjct: 41  AAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQS--NDIMLVKL 98

Query: 65  APPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNY 100
               + ++ +K   +    +++S T    +G+G  + 
Sbjct: 99  QTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDP 135

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           IIGG        P  A    ++ GG        CGG LI P +V+TAAHC   
Sbjct: 3   IIGGKEVSPHSRPFMA---SIQYGGHH-----VCGGVLIDPQWVLTAAHCQYR 47

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  201 bits (513), Expect = 9e-60
 Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYS 320
           M  V          + +  CGGSLI+P+ V+T AHC+ S         +R G    L+  
Sbjct: 145 MVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEK 204

Query: 321 VTDNI--HRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSP 377
                   ++ Q I+H N+  +  +  +D+ALL +  P+  ++ +   CL  ++    S 
Sbjct: 205 ERLPYQERKIRQVIIHSNFNPK--TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDST 262

Query: 378 TAIASGFGKLNYFDT-KESLRLMKVVLDIINNDTCSKQ--------ETTLISSQLCATVM 428
              ASG+GK  +    + S  L K+ L  ++ D C           +  L  + +CA   
Sbjct: 263 ECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG- 321

Query: 429 AGGKDTCQGDSGGPLQTIMPDL-CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT 487
             GKDTC GD G PL    P     Y  +GI ++G  CG  N P +Y  V+++  WI   
Sbjct: 322 EQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQE 381

Query: 488 VWPDQFPNSS 497
           +       + 
Sbjct: 382 MQAKGLSTTP 391

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 6   AAHCITSPLGKPRY--VRFGLITKLSYSVTDNI--HRVMQNILHPNYTTEGTSQYHDIAL 61
            AHC+ S         +R G    L+          ++ Q I+H N+  +  +  +D+AL
Sbjct: 177 GAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPK--TVVNDVAL 234

Query: 62  LKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFECTQYSKI 109
           L +  P+  ++ +   CL  ++    S    ASG+GK  +    +YS I
Sbjct: 235 LLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNI 283

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 192 IIGGSR-AKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I G +  A+YGEFP    V          + +  CGGSLI+P+ V+T AHC+ S
Sbjct: 130 ITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNS 183

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  197 bits (503), Expect = 1e-59
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FC GSL+   +V++AAHC +    +    V  G       +       + + I +  Y+ 
Sbjct: 59  FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSV 118

Query: 340 EGTSQYHDIALLKIAPP----VEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTK 393
              S + D+ L+++          S+ ++P CL        +      +G+G L+   + 
Sbjct: 119 FNPSDH-DLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSG 177

Query: 394 ESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
            S  L + ++ ++ +  CS  E     +  + LCA       D CQGDSGGPL       
Sbjct: 178 YSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPL------A 231

Query: 451 CMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFP 494
           C  N    + GI S+G  CG  + P +YTRV+ YV WI   + P +  
Sbjct: 232 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPPRRL 279

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC +    +    V  G       +       + + I +  Y+    S + D+ L+++
Sbjct: 73  AAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDH-DLVLIRL 131

Query: 65  APP----VEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNY 100
                     S+ ++P CL        +      +G+G L+ 
Sbjct: 132 KKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDE 173

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           IIGGS +  G  P  A          +     FC GSL+   +V++AAHC 
Sbjct: 36  IIGGSSSLPGSHPWLA---------AIYIGDSFCAGSLVHTCWVVSAAHCF 77

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  196 bits (500), Expect = 1e-59
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 21/230 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FC GSL+   +V++AAHC +    +    V  G       +       + + I +  Y+ 
Sbjct: 24  FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSV 83

Query: 340 EGTSQYHDIALLKIAPP----VEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTK 393
              S + D+ L+++          S+ ++P CL        +      +G+G L+   + 
Sbjct: 84  FNPSDH-DLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSG 142

Query: 394 ESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
            S  L + ++ ++ +  CS  E     +  + LCA       D CQGDSGGPL       
Sbjct: 143 YSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPL------A 196

Query: 451 CMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
           C  N    + GI S+G  CG  + P +YTRV+ YV WI   + P +   +
Sbjct: 197 CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPPRRLVA 246

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC +    +    V  G       +       + + I +  Y+    S + D+ L+++
Sbjct: 38  AAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDH-DLVLIRL 96

Query: 65  APP----VEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNY 100
                     S+ ++P CL        +      +G+G L+ 
Sbjct: 97  KKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDE 138

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 9/51 (17%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           IIGGS +  G  P  A          +     FC GSL+   +V++AAHC 
Sbjct: 1   IIGGSSSLPGSHPWLA---------AIYIGDSFCAGSLVHTCWVVSAAHCF 42

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  195 bits (499), Expect = 2e-59
 Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 20/222 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGGSLISP +V++A HC      K  Y V  G     S +  +    V   ILH +Y+ 
Sbjct: 30  VCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSA 89

Query: 340 EGTSQYHDIALLKIAPP----VEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTK 393
           +  + ++DIALLKI        + S T++   L +  ++ +  T+   +GFGK N  D  
Sbjct: 90  DTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYL 149

Query: 394 ESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
              +L   V+ +I++  C +     + + +  LCA       D+CQGDSGGPL      +
Sbjct: 150 YPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPL------V 203

Query: 451 CMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           C       + GI S+GR C   + P +YTRVS+++PWI    
Sbjct: 204 CSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           A HC      K  Y V  G     S +  +    V   ILH +Y+ +  + ++DIALLKI
Sbjct: 44  ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103

Query: 65  APP----VEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNY 100
                   + S T++   L +  ++ +  T+   +GFGK N 
Sbjct: 104 RSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENS 145

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           IIGG        P  A +           V + CGGSLISP +V++A HC 
Sbjct: 1   IIGGEFTTIENQPWFAAI---YRRHRGGSVTYVCGGSLISPCWVISATHCF 48

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  195 bits (499), Expect = 2e-59
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 25/232 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CG  LI P++V+TAAHC+     K   VR G      +   +    + +  +HPNY+  
Sbjct: 26  ACGAVLIHPSWVLTAAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKS 83

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSPT---AIASGFGKLNYFDTKE 394
            T   +DIALL +A P   S+T+ P CL     A    +      + +G+G  +  + + 
Sbjct: 84  TTD--NDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEA 141

Query: 395 SLR----LMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPD 449
                  L  + + ++ ++ CS+  + ++S   LCA ++   +D C+GDSGGP+      
Sbjct: 142 KRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPM------ 195

Query: 450 LCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
           +  ++    ++G+ S+G  CG  +   +YT+VS Y+ WI   +   + P  S
Sbjct: 196 VASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKS 247

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+     K   VR G      +   +    + +  +HPNY+   T   +DIALL +A
Sbjct: 40  AAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTD--NDIALLHLA 95

Query: 66  PPVEFSETLKPACL---NRAHNVKSPT---AIASGFGKLNY 100
            P   S+T+ P CL     A    +      + +G+G  + 
Sbjct: 96  QPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSS 136

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           +I G   + G+ P Q  V  ++        K  CG  LI P++V+TAAHC+   
Sbjct: 1   LIDGKMTRRGDSPWQ--VVLLDSKK-----KLACGAVLIHPSWVLTAAHCMDES 47

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  195 bits (498), Expect = 3e-59
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 19/224 (8%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPN 336
                G+L+  N+V+TAAH +           +R G + +LS   T          +H  
Sbjct: 21  GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQ--AWSEAVFIHEG 78

Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT---AIASGFGKLNYFDT 392
           YT +     +DIAL+K+   V  +  + P CL  +       T     ASG+G       
Sbjct: 79  YTHD-AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ--RG 135

Query: 393 KESLRLMKVVLDIINNDTCSKQETTLISSQ-------LCATVMAGGKDTCQGDSGGPLQT 445
             +  LM V + I+++  C+         +       LCA + +GGKD+C+GDSGG L  
Sbjct: 136 FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF 195

Query: 446 IMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           +  +   + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 196 LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 6   AAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
           AAH +           +R G + +LS   T          +H  YT +     +DIAL+K
Sbjct: 37  AAHAVYEQKHDASALDIRMGTLKRLSPHYTQ--AWSEAVFIHEGYTHD-AGFDNDIALIK 93

Query: 64  IAPPVEFSETLKPACL-NRAHNVKSPT---AIASGFGKLN 99
           +   V  +  + P CL  +       T     ASG+G   
Sbjct: 94  LNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 133

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  195 bits (497), Expect = 3e-59
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 10/209 (4%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY---VRFGLITKLSYSVTDNIHRVMQNILHPNY 337
           FCG S+ + NY +TA HC+     +      +  G +       ++ I  V + ILH N+
Sbjct: 29  FCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENF 88

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
                   +DI+LLK++  + F++ + P  L    +  +   I +G+G  +         
Sbjct: 89  DYNLLD--NDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSE-GGNTPDV 145

Query: 398 LMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L KV + +++++ C        ++ S +CA V  GGKD+CQGDSGGPL     D     +
Sbjct: 146 LQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAA--SDTGSTYL 203

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G  C     P +YT VSY+V WI
Sbjct: 204 AGIVSWGYGCARPGYPGVYTEVSYHVDWI 232

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 6   AAHCITSPLGKPRY---VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL 62
           A HC+     +      +  G +       ++ I  V + ILH N+        +DI+LL
Sbjct: 43  AGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLD--NDISLL 100

Query: 63  KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY 100
           K++  + F++ + P  L    +  +   I +G+G  + 
Sbjct: 101 KLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSE 138

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  194 bits (496), Expect = 4e-59
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+I+  +V+ AAHC+         +  G     + S     H V    ++ NY   
Sbjct: 27  FCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPA 86

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
                +D++++K A  + F   + P C  + A++     +  SG+G +N         L 
Sbjct: 87  TLE--NDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLR 144

Query: 400 KVVLDIINNDTCSKQ--ETTLISSQLCATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNI 455
            V L+I  N  C       T+    +CAT   G   +D+CQGDSGGPL           +
Sbjct: 145 YVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFS-L 203

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GI S+G  C  +  P +Y+RV ++  WI  T+
Sbjct: 204 VGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTI 235

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+         +  G     + S     H V    ++ NY        +D++++K A
Sbjct: 41  AAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLE--NDVSVIKTA 98

Query: 66  PPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNY 100
             + F   + P C  + A++     +  SG+G +N 
Sbjct: 99  VAITFDINVGPICAPDPANDYVYRKSQCSGWGTINS 134

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG  A+  EFP Q  V              FCGGS+I+  +V+ AAHC+  
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSD------SHFCGGSIINDRWVVCAAHCMQG 47

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  196 bits (499), Expect = 7e-59
 Identities = 70/233 (30%), Positives = 101/233 (43%), Gaps = 14/233 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLI-----TKLSYSVTDNIHRVMQNILH 334
            CGGSL++  +++TAAHC         + + FG       T            V + I+H
Sbjct: 31  VCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIH 90

Query: 335 PNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSP--TAIASGFGKLNYFD 391
             Y+    +  +DIAL+KI PPV     + P CL            T   +G+G L    
Sbjct: 91  EKYSASSEA--NDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENA 148

Query: 392 TKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
            + S  L +  +D+I+   C+        + S+ +CA    G  DTCQGDSGGPL     
Sbjct: 149 RRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDS 208

Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTTA 501
               Y ++GITS+G  C  A  P +YT    Y+ WI   +         L TA
Sbjct: 209 AENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIGSTAVHMIQLPTA 261

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 6   AAHCITSPLGKPRY-VRFGLI-----TKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI 59
           AAHC         + + FG       T            V + I+H  Y+    +  +DI
Sbjct: 45  AAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEA--NDI 102

Query: 60  ALLKIAPPVEFSETLKPACL 79
           AL+KI PPV     + P CL
Sbjct: 103 ALMKITPPVTCGHFIGPGCL 122

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           IIGG  A +G +P    +         +     CGGSL++  +++TAAHC   
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRR--YHVCGGSLLNSQWLLTAAHCFRI 51

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  193 bits (494), Expect = 8e-59
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CG +LI+  ++++AAHC T+     R+   FG +T     +   + R+   I+H  Y  
Sbjct: 25  RCGATLINATWLVSAAHCFTTYKNPARWTASFG-VTIKPSKMKRGLRRI---IVHEKYKH 80

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLR 397
                 +DI+L +++ PV ++  +   CL + ++  +       +GFG L   D      
Sbjct: 81  PSHD--YDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKN-DGYSQNH 137

Query: 398 LMKVVLDIINNDTCSKQE--TTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  + +I+  TC++ +     I+ + LCA  + G  D CQGDSGGPL +       Y 
Sbjct: 138 LRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWY- 196

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + GI S+G +C   N P +YTRV+    WI
Sbjct: 197 LAGIVSWGDECAKPNKPGVYTRVTALRDWI 226

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC T+     R+   FG +T     +   + R+   I+H  Y        +DI+L ++
Sbjct: 39  AAHCFTTYKNPARWTASFG-VTIKPSKMKRGLRRI---IVHEKYKHPSHD--YDISLAEL 92

Query: 65  APPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
           + PV ++  +   CL + ++  +       +GFG L  
Sbjct: 93  SSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKN 130

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG+  + GE+P QA + +    G+       CG +LI+  ++++AAHC T+
Sbjct: 1   IVGGTEVEEGEWPWQASLQW---DGSH-----RCGATLINATWLVSAAHCFTT 45

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  194 bits (495), Expect = 1e-58
 Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 17/233 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGGSL+S  +V++AAHC  S   K  Y V+ G     SYS    +  +   I HP+Y  
Sbjct: 25  VCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQ 84

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKES-L 396
           EG+    DIALL+++ P+ FS  ++P  L     +  +      +G+G +    +  +  
Sbjct: 85  EGSQ--GDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPK 142

Query: 397 RLMKVVLDIINNDTCSKQETTLISSQ---------LCATVMAGGKDTCQGDSGGPLQTIM 447
            L ++ + +I+ +TC+         +         +CA  + GGKD CQGDSGGPL    
Sbjct: 143 PLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC-- 200

Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTT 500
           P   ++ + GI S+G  CG  N P +YT  S Y  WI   V   Q      T 
Sbjct: 201 PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQPRVVPQTQ 253

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC  S   K  Y V+ G     SYS    +  +   I HP+Y  EG+    DIALL++
Sbjct: 39  AAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQ--GDIALLQL 96

Query: 65  APPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFECTQYSKI 109
           + P+ FS  ++P  L     +  +      +G+G +         K 
Sbjct: 97  SRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKP 143

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I GGS A  G++P Q  + +    G        CGGSL+S  +V++AAHC  S  
Sbjct: 1   ITGGSSAVAGQWPWQVSITY---EGVH-----VCGGSLVSEQWVLSAAHCFPSEH 47

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  193 bits (493), Expect = 1e-58
 Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 14/218 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVTDNI-HRVMQNIL 333
            CG SLISPN++++AAHC     G             GL  +   S       R+ + I 
Sbjct: 26  ICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIIS 85

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFD 391
           HP +        +DIALL++  P E+S  ++P  L + +H   +      +G+G   Y  
Sbjct: 86  HPFFNDFTFD--YDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQY-G 142

Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDL 450
              +L L K  + +IN  TC       I+ + +C   ++GG D+CQGDSGGPL ++  D 
Sbjct: 143 GTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADG 202

Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            ++   G+ S+G  C   N P +YTR+  +  WI    
Sbjct: 203 RIF-QAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 6   AAHCITSPLGKPRY------VRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHD 58
           AAHC     G             GL  +   S       R+ + I HP +        +D
Sbjct: 40  AAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFD--YD 97

Query: 59  IALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
           IALL++  P E+S  ++P  L + +H   +      +G+G   Y
Sbjct: 98  IALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQY 141

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG+ A  GE+P Q  V     G         CG SLISPN++++AAHC    
Sbjct: 1   VVGGTDADEGEWPWQ--VSLHALGQGH-----ICGASLISPNWLVSAAHCYIDD 47

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  194 bits (494), Expect = 2e-58
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 17/232 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG+LI+  +V++AAHC              G      +   +   RV Q I+   Y  
Sbjct: 25  LCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVP 84

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNYFDTKE 394
             T+  HDIALL++  PV  ++ + P CL     +    +    ++ SG+G+L       
Sbjct: 85  GTTN--HDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLD-RGAT 141

Query: 395 SLRLMKVVLDIINNDTCSKQ-----ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMP 448
           +L LM + +  +    C +Q     ++  I+    CA    G KD+C+GDSGGP  T   
Sbjct: 142 ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR 201

Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTT 500
               + + GI S+G+ C       +YTRVS Y+ W+   +  +  P   L  
Sbjct: 202 GT--WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRPGVLLRA 251

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC              G      +   +   RV Q I+   Y    T+  HDIALL++
Sbjct: 39  AAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTN--HDIALLRL 96

Query: 65  APPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNY 100
             PV  ++ + P CL     +    +    ++ SG+G+L  
Sbjct: 97  HQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLD 137

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 58.4 bits (142), Expect = 9e-10
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG     GE P Q  +        + +    CGG+LI+  +V++AAHC    
Sbjct: 1   IVGGKVCPKGECPWQVLL--------LVNGAQLCGGTLINTIWVVSAAHCFDKI 46

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  192 bits (490), Expect = 3e-58
 Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 13/210 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FCGG+++S  Y++TAAHC+       R+ VR G          + +H V   I H  +T 
Sbjct: 26  FCGGTILSEFYILTAAHCLYQA---KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTK 82

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
           E      DIA+L++  P+ F   + PA L  A        + SG+G            L 
Sbjct: 83  ETYD--FDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQ 140

Query: 400 KVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +   +++   C       I S+  C   + GGKD+CQGDSGGP+      +C   + G+
Sbjct: 141 CLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV------VCNGQLQGV 194

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            S+G  C   N P +YT+V  YV WI +T+
Sbjct: 195 VSWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG   K GE P Q     + E       + FCGG+++S  Y++TAAHC+   
Sbjct: 1   IVGGYNCKDGEVPWQ--ALLINEEN-----EGFCGGTILSEFYILTAAHCLYQA 47

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC+       R+ VR G          + +H V   I H  +T E      DIA+L++
Sbjct: 40  AAHCLYQA---KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYD--FDIAVLRL 94

Query: 65  APPVEFSETLKPACL 79
             P+ F   + PA L
Sbjct: 95  KTPITFRMNVAPASL 109

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  191 bits (488), Expect = 8e-58
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 22/222 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY--------------VRFGLITKLSYSVTDNIH 326
           FCGGSL+  ++++TAAHC+   L                   +  G   +L     +   
Sbjct: 26  FCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHL 85

Query: 327 RVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
            V    LHP Y        +D+AL+++      +  + P CL      +    I SG+GK
Sbjct: 86  GVKHTTLHPQYDPNTFE--NDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGK 143

Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQETTLI----SSQLCATVMAGGKDTCQGDSGGP 442
              F  +    LM++ + I+++ TC K    L        +CA    GGKD C GDSGGP
Sbjct: 144 Q--FLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP 201

Query: 443 LQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           + T+  +   + ++G  S+G  CG  +   +Y+ + +   WI
Sbjct: 202 MVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 243

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 16/107 (14%)

Query: 6   AAHCITSPLGKPRY--------------VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 51
           AAHC+   L                   +  G   +L     +    V    LHP Y   
Sbjct: 40  AAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPN 99

Query: 52  GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL 98
                +D+AL+++      +  + P CL      +    I SG+GK 
Sbjct: 100 TFE--NDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQ 144

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  191 bits (488), Expect = 1e-57
 Identities = 65/229 (28%), Positives = 91/229 (39%), Gaps = 22/229 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSV-TDNIHRVMQNIL 333
            CG SLIS  +V+TAAHC+  P     +      VR G  ++  Y    + I  + +  +
Sbjct: 27  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL     A ++         +G+G L 
Sbjct: 87  HPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145

Query: 389 YFDTKESLR-----LMKVVLDIINNDTCSKQETTLISSQ-LCA---TVMAGGKDTCQGDS 439
              T    +     L  V L I+    C       I+    CA          D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205

Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GGP     P    +  +GI S+G  C        YT V     WI   +
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 6   AAHCITSPLGKPRY------VRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHD 58
           AAHC+  P     +      VR G  ++  Y    + I  + +  +HP Y         D
Sbjct: 41  AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDR-D 99

Query: 59  IALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNYFECTQYS 107
           IAL+K+  PV FS+ + P CL     A ++         +G+G L         
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG 153

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+ GS A+ G  P Q  +            +  CG SLIS  +V+TAAHC+  P
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP 48

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  190 bits (486), Expect = 1e-57
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 20/222 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-----VRFGLITKLSYSVTDNIHRVMQNILHP 335
             GG+L+   +++TAAH +     + +      V  G  T +   +    H + +  +HP
Sbjct: 23  RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLG-HTNVEELMKLGNHPIRRVSVHP 81

Query: 336 NYTTEGTSQY-HDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDT 392
           +Y  + +  +  DIALL++   V     L P CL +             SGFG +     
Sbjct: 82  DYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--- 138

Query: 393 KESLRLMKVVLDIINNDTC-----SKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTI 446
           K +  L  V L + N   C      K    + S    CA   +  +D CQGDSGG     
Sbjct: 139 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 198

Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            P+   +   GI S+G  C        YT+V  YV WI   +
Sbjct: 199 DPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 6   AAHCITSPLGKPRY-----VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-HDI 59
           AAH +     + +      V  G  T +   +    H + +  +HP+Y  + +  +  DI
Sbjct: 37  AAHTLYPKEHEAQSNASLDVFLG-HTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDI 95

Query: 60  ALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
           ALL++   V     L P CL +             SGFG +  
Sbjct: 96  ALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE 138

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
           IIGG +AK G FP Q    F    G         GG+L+   +++TAAH +         
Sbjct: 1   IIGGQKAKMGNFPWQV---FTNIHG-------RGGGALLGDRWILTAAHTLYPKEHEAQS 50

Query: 252 KAPLRTLL 259
            A L   L
Sbjct: 51  NASLDVFL 58

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  190 bits (484), Expect = 2e-57
 Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 13/209 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+  +V++AAHC  S +     VR G          +      ++I+HP+Y + 
Sbjct: 24  FCGGSLINSQWVVSAAHCYKSGI----QVRLGEDNINVVEGNEQFISASKSIVHPSYNSN 79

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +DI L+K+      +  +    L  +        + SG+G      T     L  
Sbjct: 80  TLN--NDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKC 137

Query: 401 VVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +   I+++ +C       I S+  CA  + GGKD+CQGDSGGP+      +C   + GI 
Sbjct: 138 LKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------VCSGKLQGIV 191

Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C   N P +YT+V  YV WI  T+
Sbjct: 192 SWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  S +     VR G          +      ++I+HP+Y +   +  +DI L+K+ 
Sbjct: 38  AAHCYKSGI----QVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLN--NDIMLIKLK 91

Query: 66  PPVEFSETLKPACL 79
                +  +    L
Sbjct: 92  SAASLNSRVASISL 105

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I+GG        P+Q     +  G        FCGGSLI+  +V++AAHC  S +
Sbjct: 1   IVGGYTCGANTVPYQV---SLNSGY------HFCGGSLINSQWVVSAAHCYKSGI 46

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  190 bits (486), Expect = 2e-57
 Identities = 74/214 (34%), Positives = 109/214 (50%), Gaps = 18/214 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FCGG+LISP +V+TAAHC+        Y V  G   +++         V +  L P    
Sbjct: 43  FCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR-- 100

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
                  DIALLK++ P   ++ + PACL +  + V   T    +G+G+     T  +  
Sbjct: 101 ------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGL 152

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  L +I N  C++ E     + S++LCA  +AGG D+CQGD+GGPL     D   Y 
Sbjct: 153 LKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDK--YI 210

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + G+TS+G  C   N P +Y RVS +V WI   +
Sbjct: 211 LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC+        Y V  G   +++         V +  L P           DIALLK+
Sbjct: 57  AAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR--------KDIALLKL 108

Query: 65  APPVEFSETLKPACL 79
           + P   ++ + PACL
Sbjct: 109 SSPAVITDKVIPACL 123

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 11/55 (20%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITS 244
           ++GG  A    +P Q          +++      FCGG+LISP +V+TAAHC+  
Sbjct: 18  VVGGCVAHPHSWPWQV---------SLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  194 bits (495), Expect = 2e-57
 Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 18/222 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLS-YSVTDNIHRVMQNILHPNY 337
            CGGSL+S ++V+TAAHC            V  G + + S + +   +  V   + H  Y
Sbjct: 142 LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAV---VYHGGY 198

Query: 338 TTEGTSQY----HDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFD 391
                       +DIAL+ ++ P+  +E ++P CL      +        +G+G   Y  
Sbjct: 199 LPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQY-Y 257

Query: 392 TKESLRLMKVVLDIINNDTCSKQE--TTLISSQ-LCATVMAGGKDTCQGDSGGPL--QTI 446
            +++  L +  + II+ND C+  +     I  +  CA    GG D CQGDSGGP   +  
Sbjct: 258 GQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDS 317

Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +     + + GI S+G  C  A  P +YT+VS +  WI   +
Sbjct: 318 ISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 6   AAHCITSPLGKPRY--VRFGLITKLS-YSVTDNIHRVMQNILHPNYTTEGTSQY----HD 58
           AAHC            V  G + + S + +   +  V   + H  Y            +D
Sbjct: 156 AAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAV---VYHGGYLPFRDPNSEENSND 212

Query: 59  IALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
           IAL+ ++ P+  +E ++P CL      +        +G+G   Y
Sbjct: 213 IALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQY 256

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 57.1 bits (138), Expect = 6e-09
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I+GG     G +P Q  V    +G         CGGSL+S ++V+TAAHC     
Sbjct: 118 IVGGRDTSLGRWPWQ--VSLRYDGAH------LCGGSLLSGDWVLTAAHCFPERN 164

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  189 bits (483), Expect = 2e-57
 Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           +CGGSL++ N V+TAAHC++        +R G +++ S  +T     +    +HP+Y+  
Sbjct: 25  WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGIT---SSLSSVRVHPSYSGN 81

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLRL 398
                +D+A+LK++  +     +  A L     +  + + A  +G+G  +   +   + L
Sbjct: 82  N----NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137

Query: 399 MKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           +KV + I++  TC      + + +   CA V +GGKD+CQGDSGGP+  +        +I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPI--VDSS---NTLI 192

Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHT 487
           G  S+G  C   N   +Y  V     +I   
Sbjct: 193 GAVSWGNGCARPNYSGVYASVGALRSFIDTY 223

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC++        +R G +++ S  +T     +    +HP+Y+       +D+A+LK++
Sbjct: 39  AAHCVSGYAQSGFQIRAGSLSRTSGGIT---SSLSSVRVHPSYSGNN----NDLAILKLS 91

Query: 66  PPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
             +     +  A L     +  + + A  +G+G  + 
Sbjct: 92  TSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSE 128

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG+ A  G+FP    V     GG       +CGGSL++ N V+TAAHC++ 
Sbjct: 1   IVGGTSASAGDFPFI--VSISRNGGP------WCGGSLLNANTVLTAAHCVSG 45

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  191 bits (487), Expect = 3e-57
 Identities = 65/229 (28%), Positives = 91/229 (39%), Gaps = 22/229 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSV-TDNIHRVMQNIL 333
            CG SLIS  +V+TAAHC+  P     +      VR G  ++  Y    + I  + +  +
Sbjct: 57  LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL     A ++         +G+G L 
Sbjct: 117 HPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175

Query: 389 YFDTKESLR-----LMKVVLDIINNDTCSKQETTLISS-QLCA---TVMAGGKDTCQGDS 439
              T    +     L  V L I+    C       I+    CA          D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235

Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GGP     P    +  +GI S+G  C        YT V     WI   +
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 6   AAHCITSPLGKPRY------VRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHD 58
           AAHC+  P     +      VR G  ++  Y    + I  + +  +HP Y         D
Sbjct: 71  AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDR-D 129

Query: 59  IALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNYFECTQYS 107
           IAL+K+  PV FS+ + P CL     A ++         +G+G L         
Sbjct: 130 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG 183

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+ GS A+ G  P Q  +            +  CG SLIS  +V+TAAHC+  P
Sbjct: 31  IVEGSDAEIGMSPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP 78

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  188 bits (479), Expect = 1e-56
 Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 15/208 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG+L + + V+TAAHC++            G++   S S      R  + +  P +T 
Sbjct: 21  GCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAV--KVRSTKVLQAPGFTK 78

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
           E      D AL+K+A P+       P             T   +G+G        +   L
Sbjct: 79  ETYG--KDWALIKLAQPINQ-----PTLKIATTTAYNQGTFTVAGWGAN-REGGSQQRYL 130

Query: 399 MKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           +K  +  +++  C        + +  +CA      +DTCQGDSGGP+            +
Sbjct: 131 LKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWV-QV 189

Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
           GI S+G  C       +YT VS +   I
Sbjct: 190 GIVSWGEGCARKGKYGVYTEVSTFASAI 217

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 12/62 (19%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
           ++GG+RA  GEFP    +               CGG+L + + V+TAAHC++     T +
Sbjct: 1   VVGGTRAAQGEFPFMVRLSM------------GCGGALYAQDIVLTAAHCVSGSGNNTSI 48

Query: 252 KA 253
            A
Sbjct: 49  TA 50

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC++            G++   S S      R  + +  P +T E      D AL+K+
Sbjct: 35  AAHCVSGSGNNTSITATGGVVDLQSSSAV--KVRSTKVLQAPGFTKETYG--KDWALIKL 90

Query: 65  APPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNY 100
           A P+       P             T   +G+G    
Sbjct: 91  AQPINQ-----PTLKIATTTAYNQGTFTVAGWGANRE 122

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  198 bits (506), Expect = 1e-56
 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 10/213 (4%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGGS+I   +++TAAHC           V  G++ +       +   V + I+H  Y  
Sbjct: 415 LCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKM 474

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLR 397
             +   +DIALLK+   V ++++ +P CL ++       T    +G+G       K    
Sbjct: 475 AESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKL-RDKIQNT 531

Query: 398 LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L K  + ++ N+ C K  +   +    +CA    GGKD C+GDSGGPL     +  ++++
Sbjct: 532 LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNE--VWHL 589

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GITS+G  C     P +YT V  YV WI+   
Sbjct: 590 VGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC           V  G++ +       +   V + I+H  Y    +   +DIALLK+
Sbjct: 429 AAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLKL 486

Query: 65  APPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
              V ++++ +P CL ++       T    +G+G    
Sbjct: 487 ETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKL 524

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG+ +  GE+P Q  +            +  CGGS+I   +++TAAHC   
Sbjct: 388 IVGGTASVRGEWPWQVTLHTTSPTQ-----RHLCGGSIIGNQWILTAAHCFYG 435

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  186 bits (476), Expect = 2e-56
 Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 14/209 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSL++ N+V++AAHC  S +     VR G         ++      + I HPNY++ 
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRV----EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSY 79

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                +DI L+K++ P   +  ++P  L  +          SG+G      T +S +L  
Sbjct: 80  NID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMS-STADSNKLQC 136

Query: 401 VVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           + + I++   C+     +I ++  CA  + GGKD+CQGDSGGP+      +C   + G+ 
Sbjct: 137 LNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQGVV 190

Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           S+G  C     P +Y +V  +  W+  T+
Sbjct: 191 SWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  S +     VR G         ++      + I HPNY++      +DI L+K++
Sbjct: 38  AAHCYKSRV----EVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLIKLS 91

Query: 66  PPVEFSETLKPACL 79
            P   +  ++P  L
Sbjct: 92  KPATLNTYVQPVAL 105

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 57.9 bits (141), Expect = 8e-10
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I+GG   K    PHQ     +  G        FCGGSL++ N+V++AAHC  S +
Sbjct: 1   IVGGYECKAYSQPHQV---SLNSGY------HFCGGSLVNENWVVSAAHCYKSRV 46

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  187 bits (477), Expect = 3e-56
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 14/216 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG+L+  ++V+TAAHCI+S      Y V  G  +  +        +V + ++H ++ +
Sbjct: 29  TCGGTLVDQSWVLTAAHCISSSR---TYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNS 85

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
              S  +DIALLK+A PV  ++ ++  CL      + +      +G+G+L   +      
Sbjct: 86  NQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQT-NGASPDI 144

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  L +++  TCSK     +T+ ++ +CA    G   +C GDSGGPL     +   + 
Sbjct: 145 LQQGQLLVVDYATCSKPGWWGSTVKTNMICAG-GDGIISSCNGDSGGPLNCQGAN-GQWQ 202

Query: 455 IIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
           + GI S+G    C + + P+++TRVS Y+ WI   +
Sbjct: 203 VHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHCI+S      Y V  G  +  +        +V + ++H ++ +   S  +DIALLK+
Sbjct: 43  AAHCISSSR---TYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKL 99

Query: 65  APPVEFSETLKPACL 79
           A PV  ++ ++  CL
Sbjct: 100 ASPVSLTDKIQLGCL 114

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG  A+   +P Q  + +   G         CGG+L+  ++V+TAAHCI+S 
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRH----TCGGTLVDQSWVLTAAHCISSS 50

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  187 bits (476), Expect = 4e-56
 Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 12/211 (5%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+ N+V+TAAHC  +       V  G   + S S      ++ +   +  Y + 
Sbjct: 41  FCGGSLINENWVVTAAHCGVTTSDV---VVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSL 97

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
             +  +DI LLK++    FS+T+   CL  A +  +   T + +G+G   Y +     RL
Sbjct: 98  TIN--NDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRL 155

Query: 399 MKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +  L +++N  C K   T I    +CA   A G  +C GDSGGPL         + ++G
Sbjct: 156 QQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVC--KKNGAWTLVG 211

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I S+G      +TP +Y RV+  V W+  T+
Sbjct: 212 IVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  +       V  G   + S S      ++ +   +  Y +   +  +DI LLK++
Sbjct: 55  AAHCGVTTSDV---VVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTIN--NDITLLKLS 109

Query: 66  PPVEFSETLKPACL 79
               FS+T+   CL
Sbjct: 110 TAASFSQTVSAVCL 123

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 11/56 (19%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITSP 245
           I+ G  A  G +P Q          +++D     FCGGSLI+ N+V+TAAHC  + 
Sbjct: 16  IVNGEEAVPGSWPWQV---------SLQDKTGFHFCGGSLINENWVVTAAHCGVTT 62

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  192 bits (489), Expect = 4e-56
 Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 19/224 (8%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPN 336
                G+L+  N+V+TAAH +           +R G + +LS   T          +H  
Sbjct: 182 GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQ--AWSEAVFIHEG 239

Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSPT-AIASGFGKLNYFDT 392
           YT +     +DIAL+K+   V  +  + P CL        +++     ASG+G       
Sbjct: 240 YTHD-AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ--RG 296

Query: 393 KESLRLMKVVLDIINNDTCSKQETTLISSQ-------LCATVMAGGKDTCQGDSGGPLQT 445
             +  LM V + I+++  C+         +       LCA + +GGKD+C+GDSGG L  
Sbjct: 297 FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF 356

Query: 446 IMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           +  +   + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 357 LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 6   AAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
           AAH +           +R G + +LS   T          +H  YT +     +DIAL+K
Sbjct: 198 AAHAVYEQKHDASALDIRMGTLKRLSPHYTQ--AWSEAVFIHEGYTHD-AGFDNDIALIK 254

Query: 64  IAPPVEFSETLKPACL---NRAHNVKSPT-AIASGFGKLN 99
           +   V  +  + P CL        +++     ASG+G   
Sbjct: 255 LNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 294

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  186 bits (475), Expect = 4e-56
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 16/216 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGGSLI   +VMTAAHC+ S      + V  G     +    + I  V    +H  + +
Sbjct: 29  TCGGSLIRQGWVMTAAHCVDSAR---TWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNS 85

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
           +  +  +DIALL++      +  ++ A L      + +      +G+GK +      S  
Sbjct: 86  DDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTST-GGPLSDS 144

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  L  +++ TCS      +T+ ++ +CA    G    C GDSGGPL         Y 
Sbjct: 145 LKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNC--QVNGSYY 200

Query: 455 IIGITS--YGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + G+TS      C  +  P ++TRVS Y+ W+   +
Sbjct: 201 VHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC+ S      + V  G     +    + I  V    +H  + ++  +  +DIALL++
Sbjct: 43  AAHCVDSAR---TWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRL 99

Query: 65  APPVEFSETLKPACL 79
                 +  ++ A L
Sbjct: 100 NTQASLNSAVQLAAL 114

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG  A+   +P Q  + +             CGGSLI   +VMTAAHC+ S 
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYH----TCGGSLIRQGWVMTAAHCVDSA 50

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  186 bits (475), Expect = 6e-56
 Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 28/230 (12%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG LIS  ++++AAHC           V  G   ++     +    V + I+H  +  
Sbjct: 31  LCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDD 90

Query: 340 EGTSQYHDIALLKIAPP----VEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTK 393
           +     +DIALL++        + S  ++  CL      +   T    SG+GK       
Sbjct: 91  DTYD--NDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPF 148

Query: 394 ESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGG------KDTCQGDSGGPLQ 444
            S RL +  + +  +  C+ Q     T+  + LCA     G       D CQGDSGGPL 
Sbjct: 149 YSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPL- 207

Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
                +C+ +    ++GI S+G  CG  + P +YT+V+ Y+ WI   + P
Sbjct: 208 -----VCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP 252

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC           V  G   ++     +    V + I+H  +  +     +DIALL++
Sbjct: 45  AAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYD--NDIALLQL 102

Query: 65  APP----VEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
                   + S  ++  CL      +   T    SG+GK   
Sbjct: 103 KSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEA 144

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I GG  A     P Q       +       ++ CGG LIS  ++++AAHC   
Sbjct: 1   IKGGLFADIASHPWQ--AAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQE 51

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  185 bits (473), Expect = 7e-56
 Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 16/210 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CG S++  N V+TAAHC+       R  V  G       S + +++ V   +++ NY  
Sbjct: 25  RCGASILDNNNVLTAAHCVDGLSNLNRLKVHVG---TNYLSESGDVYDVEDAVVNKNYDD 81

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
                 +D+AL+ +  P++F++ ++P  L     +++S     +G+G            L
Sbjct: 82  --FLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRL-GGNTPNAL 138

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            ++ L +     C + +  +I S +C  +   G+  C GDSGGPL      +     IGI
Sbjct: 139 QEIELIVHPQKQCERDQWRVIDSHICT-LTKRGEGACHGDSGGPL------VANGAQIGI 191

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            S+G  C     P +YTRVS +V WI   +
Sbjct: 192 VSFGSPCA-LGEPDVYTRVSSFVSWINANL 220

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC+       R  V  G       S + +++ V   +++ NY        +D+AL+ +
Sbjct: 39  AAHCVDGLSNLNRLKVHVG---TNYLSESGDVYDVEDAVVNKNYDD--FLLRNDVALVHL 93

Query: 65  APPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNY 100
             P++F++ ++P  L     +++S     +G+G    
Sbjct: 94  TNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRL 130

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG  A  G++P+Q  V     G         CG S++  N V+TAAHC+  
Sbjct: 1   IVGGKDAPVGKYPYQ--VSLRLSGSH------RCGASILDNNNVLTAAHCVDG 45

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  186 bits (474), Expect = 9e-56
 Identities = 69/227 (30%), Positives = 97/227 (42%), Gaps = 32/227 (14%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           FCGGSLI P +V+TAAHC+   +       V+              + R+   I+HP + 
Sbjct: 28  FCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRI---IVHPQFY 84

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY-FDTKES 395
              T    DIALL++  PV  S  +    L   +           +G+G ++        
Sbjct: 85  IIQTG--ADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPP 142

Query: 396 LRLMKVVLDIINNDTCSK---------QETTLISSQ-LCATVMAGGKDTCQGDSGGPLQT 445
             L +V + I+ N  C            +  +I    LCA      +D+CQGDSGGPL  
Sbjct: 143 FPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLV- 199

Query: 446 IMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                C  N      G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 200 -----CKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 6   AAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
           AAHC+   +       V+              + R+   I+HP +    T    DIALL+
Sbjct: 42  AAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRI---IVHPQFYIIQTG--ADIALLE 96

Query: 64  IAPPVEFSETLKPACL 79
           +  PV  S  +    L
Sbjct: 97  LEEPVNISSRVHTVML 112

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITSPL 246
           I+GG  A   ++P Q  +        ++D  W  FCGGSLI P +V+TAAHC+   +
Sbjct: 1   IVGGQEAPRSKWPWQVSL-------RVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDV 50

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  185 bits (473), Expect = 1e-55
 Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 19/224 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGL--ITKLSYSVTDNIHRVMQNILHPNYT 338
            CGGSLI  ++V+TA  C  S   K      G+  +          +  V Q +  P   
Sbjct: 24  ICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG- 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKESL 396
                   D+ L+K+A P    + +    L N    +   T+    G+G           
Sbjct: 83  -------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTG--LINYDG 133

Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            L    L I+ N+ CS+    + TL  S++CA     G   C+GD GGPL        M 
Sbjct: 134 LLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVC--EQHKMR 191

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
            ++G+   GR C   N P I+ RV+YY  WI   +   + P S 
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQSH 235

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 6   AAHCITSPLGKPRYVRFGL--ITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
           A  C  S   K      G+  +          +  V Q +  P           D+ L+K
Sbjct: 38  ARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG--------SDLVLMK 89

Query: 64  IAPPVEFSETLKPACL 79
           +A P    + +    L
Sbjct: 90  LARPAVLDDFVSTIDL 105

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           ++ G   +         V               CGGSLI  ++V+TA  C  S
Sbjct: 1   VVNGIPTR-TNIGWM--VSLRYRNKH------ICGGSLIKESWVLTARQCFPS 44

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  185 bits (472), Expect = 1e-55
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 20/217 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGL--ITKLSYSVTDNIHRVMQNILHPNYT 338
            CG SL+S    ++A+HC+   L     V  GL   +  S + T N+       +H NY 
Sbjct: 28  SCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSY---TMHENYG 84

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESL 396
               S  +DIA+L +A  +     ++ A L   +N      T + SG+G+ +        
Sbjct: 85  AGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDG-TNNLPD 143

Query: 397 RLMKVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
            L K  + +I    C+          +  + +C    AG    C GDSGGPL    PD  
Sbjct: 144 ILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNC--PD-G 200

Query: 452 MYNIIGITS----YGRQCGHANTPAIYTRVSYYVPWI 484
              ++G+TS     G      + P++YTRVS Y+ WI
Sbjct: 201 GTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 6   AAHCITSPLGKPRYVRFGL--ITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
           A+HC+   L     V  GL   +  S + T N+       +H NY     S  +DIA+L 
Sbjct: 42  ASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSY---TMHENYGAGTASYSNDIAILH 98

Query: 64  IAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNY 100
           +A  +     ++ A L   +N      T + SG+G+ + 
Sbjct: 99  LATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDG 137

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           +IGG+ A  GEFP Q  +    + G+       CG SL+S    ++A+HC+  
Sbjct: 1   VIGGTNASPGEFPWQ--LSQQRQSGSWS---HSCGASLLSSTSALSASHCVDG 48

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  185 bits (471), Expect = 2e-55
 Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 15/216 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            CGG+LI  N+VMTAAHC+   L    + V  G       + T+    V + ++HP + T
Sbjct: 29  TCGGTLIRQNWVMTAAHCVDREL---TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNT 85

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR 397
           +  +  +DIALL++A  V  +  ++   L RA  + +       +G+G     + + +  
Sbjct: 86  DDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRT-NGQLAQT 144

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  L  ++   CS      +T+ +S +CA    G +  CQGDSGGPL         Y 
Sbjct: 145 LQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHC--LVNGQYA 201

Query: 455 IIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
           + G+TS+  +  C     P ++TRVS Y+ WI + +
Sbjct: 202 VHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC+   L    + V  G       + T+    V + ++HP + T+  +  +DIALL++
Sbjct: 43  AAHCVDREL---TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRL 99

Query: 65  APPVEFSETLKPACL 79
           A  V  +  ++   L
Sbjct: 100 AQSVTLNSYVQLGVL 114

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           ++GG+ A+   +P Q  + +             CGG+LI  N+VMTAAHC+   L
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAH----TCGGTLIRQNWVMTAAHCVDREL 51

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  188 bits (479), Expect = 2e-55
 Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-----VRFGLITKLSYSVTDNIHRVMQNILHP 335
             GG+L+   +++TAAH +     + +      V  G  T +   +    H + +  +HP
Sbjct: 112 RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLG-HTNVEELMKLGNHPIRRVSVHP 170

Query: 336 NYTTEGTSQY-HDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDT 392
           +Y  + +  +  DIALL++   V     L P CL +             SGFG +     
Sbjct: 171 DYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--- 227

Query: 393 KESLRLMKVVLDIINNDTC-----SKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTI 446
           K +  L  V L + N   C      K    + S    CA   +  +D CQGDSGG     
Sbjct: 228 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 287

Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            P+   +   GI S+G  C  +     YT+V  YV WI   +
Sbjct: 288 DPNTDRWVATGIVSWGIGC--SRGYGFYTKVLNYVDWIKKEM 327

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 68.6 bits (168), Expect = 9e-13
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 6   AAHCITSPLGKPRY-----VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-HDI 59
           AAH +     + +      V  G  T +   +    H + +  +HP+Y  + +  +  DI
Sbjct: 126 AAHTLYPKEHEAQSNASLDVFLG-HTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDI 184

Query: 60  ALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLN 99
           ALL++   V     L P CL +             SGFG + 
Sbjct: 185 ALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME 226

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  185 bits (471), Expect = 2e-55
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 19/215 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLIT--KLSYSVTDNIHRVMQNILHPN 336
           FCGGSL+   +++TA  C +S         V  G +         +     V + +  P+
Sbjct: 23  FCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPS 82

Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTKE 394
                      + LLK+   V  ++ +   CL    + V   T    +G+G+        
Sbjct: 83  G--------SQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN-- 132

Query: 395 SLRLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
              L   +L++I+N  C+ +    +    +C   +      C+GD GGPL         +
Sbjct: 133 DTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLAC--FTHNSW 190

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + GI    R C  +  PA++TRVS +V WI   +
Sbjct: 191 VLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 12/78 (15%)

Query: 6   AAHCITSPLGKPRY--VRFGLIT--KLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIAL 61
           A  C +S         V  G +         +     V + +  P+           + L
Sbjct: 37  ARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG--------SQLVL 88

Query: 62  LKIAPPVEFSETLKPACL 79
           LK+   V  ++ +   CL
Sbjct: 89  LKLERSVTLNQRVALICL 106

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 14/55 (25%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITS 244
           ++GG     G  P            ++++ +   FCGGSL+   +++TA  C +S
Sbjct: 1   VVGGHP---GNSPWTV---------SLRNRQGQHFCGGSLVKEQWILTARQCFSS 43

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  185 bits (471), Expect = 2e-55
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 20/222 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+ P +V+TAAHC+   + + R +  GL T  S  +T +I      I HP Y   
Sbjct: 25  LCGGVLVHPKWVLTAAHCLAQRMAQLR-LVLGLHTLDSPGLTFHIKAA---IQHPRYKPV 80

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKESLRL 398
              +  D+ALL++   V+ S T++P  L ++   V + T    +G+G  +    + S  L
Sbjct: 81  PALEN-DLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQ-GGRLSRVL 138

Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC--MY 453
            ++ L +++   C+       +L  S +C    +  +  C+GDSGGPL      +C    
Sbjct: 139 RELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPL------VCGKGR 192

Query: 454 NIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWPDQFP 494
            + G+ S+  R C     P + T V+ YV WI          
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRSALE 234

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+   + + R +  GL T  S  +T +I      I HP Y      +  D+ALL++ 
Sbjct: 39  AAHCLAQRMAQLR-LVLGLHTLDSPGLTFHIKAA---IQHPRYKPVPALEN-DLALLQLD 93

Query: 66  PPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNY 100
             V+ S T++P  L ++   V + T    +G+G  + 
Sbjct: 94  GKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQ 130

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG        P+ A    ++  G        CGG L+ P +V+TAAHC+   +
Sbjct: 1   IIGGREVIPHSRPYMA---SLQRNG-----SHLCGGVLVHPKWVLTAAHCLAQRM 47

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  183 bits (468), Expect = 4e-55
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 12/206 (5%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +FCGGSLISP +++TAAHC+         V  G         T    +     +H NY +
Sbjct: 24  YFCGGSLISPEWILTAAHCMDGAGFV--DVVLGAHNIREDEATQVTIQSTDFTVHENYNS 81

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
              S  +DIA++++  PV  +  +    L             +G+G  +      S  L 
Sbjct: 82  FVIS--NDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLR 139

Query: 400 KVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           +V + I++N  C      +    +C     GGK TC GDSGGPL             GIT
Sbjct: 140 QVDVPIMSNADCDAVYGIVTDGNICI-DSTGGKGTCNGDSGGPL------NYNGLTYGIT 192

Query: 460 SYGRQCG-HANTPAIYTRVSYYVPWI 484
           S+G   G  A  P  +TRV+Y++ WI
Sbjct: 193 SFGAAAGCEAGYPDAFTRVTYFLDWI 218

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 67.5 bits (166), Expect = 5e-13
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG  A    +PHQ       +        +FCGGSLISP +++TAAHC+   
Sbjct: 1   IVGGVEAVPNSWPHQ--AALFIDDM------YFCGGSLISPEWILTAAHCMDGA 46

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+         V  G         T    +     +H NY +   S  +DIA++++ 
Sbjct: 39  AAHCMDGAGFV--DVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVIS--NDIAVIRLP 94

Query: 66  PPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY 100
            PV  +  +    L             +G+G  + 
Sbjct: 95  VPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSD 129

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  183 bits (468), Expect = 5e-55
 Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 18/212 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--VMQNILHPNYT 338
            CGG+LI+  +V+TA HC    +     +  G +  L     D + R    +        
Sbjct: 24  LCGGTLINQEWVLTARHCDRGNM----RIYLG-MHNLKVLNKDALRRFPKEKYFCLNTRN 78

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
                   DI L+++  PV  S  + P  L  ++     +     G+G +   +      
Sbjct: 79  DTIWD--KDIMLIRLNRPVRNSAHIAPLSL-PSNPPSVGSVCRIMGWGTITSPNATLPDV 135

Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
                ++I++   C      L ++ LCA ++ GGKDTC+GDSGGPL      +C     G
Sbjct: 136 PHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTCKGDSGGPL------ICNGQFQG 189

Query: 458 ITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           I S G   C     P IYT+V  Y  WI   +
Sbjct: 190 ILSVGGNPCAQPRKPGIYTKVFDYTDWIQSII 221

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 58.7 bits (143), Expect = 6e-10
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           +IGG      E    A    V   G+       CGG+LI+  +V+TA HC    +
Sbjct: 1   VIGGDECNINEHRFLA---LVYANGS------LCGGTLINQEWVLTARHCDRGNM 46

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--VMQNILHPNYTTEGTSQYHDIALLK 63
           A HC    +     +  G +  L     D + R    +                DI L++
Sbjct: 38  ARHCDRGNM----RIYLG-MHNLKVLNKDALRRFPKEKYFCLNTRNDTIWD--KDIMLIR 90

Query: 64  IAPPVEFSETLKPACL 79
           +  PV  S  + P  L
Sbjct: 91  LNRPVRNSAHIAPLSL 106

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  188 bits (479), Expect = 1e-54
 Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-----VRFGLITKLSYSVTDNIHRVMQNILHP 335
             GG+L+   +++TAAH +     + +      V  G  T +   +    H + +  +HP
Sbjct: 180 RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLG-HTNVEELMKLGNHPIRRVSVHP 238

Query: 336 NYTTEGTSQY-HDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDT 392
           +Y  + +  +  DIALL++   V     L P CL +             SGFG +     
Sbjct: 239 DYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--- 295

Query: 393 KESLRLMKVVLDIINNDTC-----SKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTI 446
           K +  L  V L + N   C      K    + S    CA   +  +D CQGDSGG     
Sbjct: 296 KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 355

Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            P+   +   GI S+G  C  +     YT+V  YV WI   +
Sbjct: 356 DPNTDRWVATGIVSWGIGC--SRGYGFYTKVLNYVDWIKKEM 395

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 6   AAHCITSPLGKPRY-----VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-HDI 59
           AAH +     + +      V  G  T +   +    H + +  +HP+Y  + +  +  DI
Sbjct: 194 AAHTLYPKEHEAQSNASLDVFLG-HTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDI 252

Query: 60  ALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
           ALL++   V     L P CL +             SGFG +  
Sbjct: 253 ALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE 295

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  183 bits (466), Expect = 1e-54
 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGS+++ N+V+TAA C+         + +G     SY  T     + + I    Y   
Sbjct: 25  FCGGSILTANFVITAAQCVDGTKPSDISIHYGS----SYRTTKGTSVMAKKIYIVRYHPL 80

Query: 341 GTSQYHDIALLKIAPPVEFSE-TLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLR 397
                ++ A+++   P++  + T K   L +  ++ +  T  + SG+G  N+   + S  
Sbjct: 81  TMQ--NNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGD 138

Query: 398 LMKVVLDIINNDTCSKQETTLI------SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
           LM+    +++  +C +Q   +           CA           GD+G P       + 
Sbjct: 139 LMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPA------VQ 192

Query: 452 MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              ++G+ SY      +  P+++ RV YYV  I   +
Sbjct: 193 NGTLVGVASYISSMP-SEFPSVFLRVGYYVLDIKDII 228

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           IIGG ++   + P    VG + +       K FCGGS+++ N+V+TAA C+  
Sbjct: 1   IIGGKKSDITKEPWA--VGVLVDE------KPFCGGSILTANFVITAAQCVDG 45

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AA C+         + +G     SY  T     + + I    Y        ++ A+++  
Sbjct: 39  AAQCVDGTKPSDISIHYGS----SYRTTKGTSVMAKKIYIVRYHPLTMQ--NNYAVIETE 92

Query: 66  PPVEFSE-TLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
            P++  + T K   L +  ++ +  T  + SG+G  N+
Sbjct: 93  MPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNF 130

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  183 bits (466), Expect = 1e-54
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 14/211 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FC G+LI+  +V+TAAHC  +       ++ G+ +K   +  +      +  + PN   +
Sbjct: 25  FCSGTLINEEWVLTAAHCDNTNF----QMKLGVHSKKVLNEDEQTRNPKEKFICPNKKND 80

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                 DI L+K+   V  SE + P  L  +           G+G +             
Sbjct: 81  EVLD-KDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYC 139

Query: 401 VVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
             ++++++  C      L+     LCA ++ GGKDTC GDSGGPL      +C     GI
Sbjct: 140 AYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPL------ICNGQFQGI 193

Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
            S+G   CG    P +YT+V  Y  WI   +
Sbjct: 194 VSFGAHPCGQGLKPGVYTKVFDYNHWIQSII 224

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           +IGG      E      V F    G       FC G+LI+  +V+TAAHC  +  
Sbjct: 1   VIGGDECNINEHRSL--VAFFNSTGF------FCSGTLINEEWVLTAAHCDNTNF 47

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  +       ++ G+ +K   +  +      +  + PN   +      DI L+K+ 
Sbjct: 39  AAHCDNTNF----QMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLD-KDIMLIKLD 93

Query: 66  PPVEFSETLKPACL 79
             V  SE + P  L
Sbjct: 94  SRVSNSEHIVPLSL 107

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  182 bits (464), Expect = 1e-54
 Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 16/206 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V+TAAHC  +       V  G  T           +  ++  HP Y+T+
Sbjct: 25  HCGGVLVNERWVLTAAHCKMNEY----TVHLGSDTLGDRRAQ--RIKASKSFRHPGYSTQ 78

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                +D+ L+K+      S  +K   L         T   SG+G     D      LM 
Sbjct: 79  THV--NDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMC 136

Query: 401 VVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
           V + +I+   C+K    L+ +S LCA +    K+ C GDSGGPL      +C   + G+ 
Sbjct: 137 VDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPL------VCRGTLQGLV 190

Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWI 484
           S+G   CG  N P +YT+V  +  WI
Sbjct: 191 SWGTFPCGQPNDPGVYTQVCKFTKWI 216

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           II G+    G  P Q  V  +            CGG L++  +V+TAAHC  +  
Sbjct: 1   IIDGAPCARGSHPWQ--VALLSGNQL------HCGGVLVNERWVLTAAHCKMNEY 47

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  +       V  G  T           +  ++  HP Y+T+     +D+ L+K+ 
Sbjct: 39  AAHCKMNEY----TVHLGSDTLGDRRAQ--RIKASKSFRHPGYSTQTHV--NDLMLVKLN 90

Query: 66  PPVEFSETLKPACL 79
                S  +K   L
Sbjct: 91  SQARLSSMVKKVRL 104

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  182 bits (464), Expect = 1e-54
 Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LI P +V+TAAHC    L     V  G         +     V++ ++HP+Y   
Sbjct: 25  LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAA 80

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
                 DI LL++A P + SE ++P  L R  +  + +    G+GK    D      +  
Sbjct: 81  SHD--QDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTA--DGDFPDTIQC 136

Query: 401 VVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
             + +++ + C       I  + LCA     GKD+CQGDSGGPL      +C  ++ G+ 
Sbjct: 137 AYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 190

Query: 460 SYGRQ-CGHANTPAIYTRVSYYVPWI 484
           S+G   CG    P +YT V  Y  WI
Sbjct: 191 SWGNIPCGSKEKPGVYTNVCRYTNWI 216

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC    L     V  G         +     V++ ++HP+Y         DI LL++A
Sbjct: 39  AAHCKKPNL----QVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHD--QDIMLLRLA 92

Query: 66  PPVEFSETLKPACL 79
            P + SE ++P  L
Sbjct: 93  RPAKLSELIQPLPL 106

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           ++ G        P+QA    +   G +      CGG LI P +V+TAAHC    L
Sbjct: 1   LVHGGPCDKTSHPYQA---ALYTSGHL-----LCGGVLIHPLWVLTAAHCKKPNL 47

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  182 bits (464), Expect = 1e-54
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 19/213 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG+++S  +V+TAAHC+     KP  +     +   +         + ++    Y  E
Sbjct: 27  TCGGAILSQWFVLTAAHCVFDQ--KPETIVIQYESTNLWEDPGKSDPYVSHVYLSFYRQE 84

Query: 341 GTSQYHDIALLKIAPPVEFSE-TLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESLR 397
                +DIA+L+++ P++      KPA L +     K+ +  + SG+G        +   
Sbjct: 85  TME--NDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQT-MDPKDHD 141

Query: 398 LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L    L +++ D C        L     CA     G     GD+G P       +    +
Sbjct: 142 LKSAQLTVVDLDECRTKYGPIFLSLQVFCAQ--KVGVSLESGDAGDPT------VQQDTL 193

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +G+ +Y  +      P ++T+V  YV WI   +
Sbjct: 194 VGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDII 225

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 194 GGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           GG +    + P    V               CGG+++S  +V+TAAHC+  
Sbjct: 2   GGEKTDIKQVPWTVAVRTYPGEE-----SLTCGGAILSQWFVLTAAHCVFD 47

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+     KP  +     +   +         + ++    Y  E     +DIA+L+++
Sbjct: 41  AAHCVFDQ--KPETIVIQYESTNLWEDPGKSDPYVSHVYLSFYRQETME--NDIAILELS 96

Query: 66  PPVEFSE-TLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
            P++      KPA L +     K+ +  + SG+G    
Sbjct: 97  RPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQT 134

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  182 bits (464), Expect = 2e-54
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 17/214 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L++  +V++AAHC+         V  G  +      +  ++ V++ + HP+   +
Sbjct: 25  LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
                HD+ LL+++        ++P    R     +P      +G+G +N+   +    L
Sbjct: 85  TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNH-AGRRPDSL 141

Query: 399 MKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
             V+L +++  TC+++      +    +CA   +  +D+C+GD+GGPL      +C   +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDAGGPL------VCGGVL 193

Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
            G+ + G R CG+   P IYTRV+ Y  WI   +
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+         V  G  +      +  ++ V++ + HP+   +     HD+ LL+++
Sbjct: 39  AAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTID--HDLLLLQLS 96

Query: 66  PPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNY 100
                   ++P    R     +P      +G+G +N+
Sbjct: 97  EKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNH 133

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
           I+GG  A+    P+ A    V+  G        CGG L++  +V++AAHC+     G +
Sbjct: 1   ILGGREAEAHARPYMA---SVQLNGAH-----LCGGVLVAEQWVLSAAHCLEDAADGKV 51

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  181 bits (463), Expect = 2e-54
 Identities = 43/206 (20%), Positives = 71/206 (34%), Gaps = 19/206 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LI   +VMTAA C  S       V  G                + ++    Y  +
Sbjct: 25  FCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQ 84

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
                +D+ LL++      + ++    L   +           +G+G       + S   
Sbjct: 85  QNL--NDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRS-GGRLSRFP 141

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
             V + +   D C         + +C  V+      C GD G PL      +C     G+
Sbjct: 142 RFVNVTVTPEDQCR-------PNNVCTGVLTRRGGICNGDGGTPL------VCEGLAHGV 188

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            S+         P  +TRV+ +  WI
Sbjct: 189 ASFSLGPC-GRGPDFFTRVALFRDWI 213

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 61.0 bits (149), Expect = 9e-11
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
           I+GG +A+  +FP  A    ++  G     + FCGG+LI   +VMTAA C  S   G  
Sbjct: 1   IVGGRKARPRQFPFLA---SIQNQG-----RHFCGGALIHARFVMTAASCFQSQNPGVS 51

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AA C  S       V  G                + ++    Y  +     +D+ LL++ 
Sbjct: 39  AASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNL--NDLMLLQLD 96

Query: 66  PPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNY 100
                + ++    L   +           +G+G    
Sbjct: 97  REANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRS 133

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  181 bits (462), Expect = 4e-54
 Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 17/218 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGL--ITKLSYSVTDNIHRVMQNILHPNY 337
            CGGSLI+P++V+TA HCI++      Y V  G    + L  S            +HP +
Sbjct: 27  TCGGSLIAPDWVVTAGHCISTSR---TYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLW 83

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKES 395
            +   +  +DIAL+K++   +  + ++ A L  A ++         SG+G+L        
Sbjct: 84  NSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYT-GGPLP 142

Query: 396 LRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            +L + +L  ++ + CS+ +    T+  + +CA      +  C GDSGGPL     D   
Sbjct: 143 DKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAAD-GS 199

Query: 453 YNIIGITS--YGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + + G+TS      C     P ++TRVS ++ WI  T+
Sbjct: 200 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 6   AAHCITSPLGKPRY-VRFGL--ITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL 62
           A HCI++      Y V  G    + L  S            +HP + +   +  +DIAL+
Sbjct: 41  AGHCISTSR---TYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALV 97

Query: 63  KIAPPVEFSETLKPACL 79
           K++   +  + ++ A L
Sbjct: 98  KLSRSAQLGDKVQLANL 114

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 195 GSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           G  A    +  Q  + + ++G         CGGSLI+P++V+TA HCI++ 
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHH----TCGGSLIAPDWVVTAGHCISTS 48

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  181 bits (461), Expect = 5e-54
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 22/216 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--VMQNILHPNYT 338
           FCGG+LI+  +V+TAAHC          ++ G +        D   R    +     +  
Sbjct: 27  FCGGTLINQEWVLTAAHCDRKNF----RIKLG-MHSKKVPNEDEQTRVPKEKFFCLSSKN 81

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
                   DI L+++  PV+ S+ + P  L  +      +     G+G+++  +      
Sbjct: 82  YTLWD--KDIMLIRLDSPVKNSKHIAPFSL-PSSPPSVGSVCRIMGWGRISPTEGTYPDV 138

Query: 398 LMKVVLDIINNDTCSKQ----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
              V ++++  + C       E    S  LCA ++ GGKDTC+GDSGGPL      +C  
Sbjct: 139 PHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPL------ICNG 192

Query: 454 NIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
              GI S+G   C   + PA YT+V  ++ WI + +
Sbjct: 193 QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG      E      +              FCGG+LI+  +V+TAAHC     
Sbjct: 1   IIGGDECNINEHRFLVALYTSRSR------TLFCGGTLINQEWVLTAAHCDRKNF 49

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--VMQNILHPNYTTEGTSQYHDIALLK 63
           AAHC          ++ G +        D   R    +     +          DI L++
Sbjct: 41  AAHCDRKNF----RIKLG-MHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWD--KDIMLIR 93

Query: 64  IAPPVEFSETLKPACL 79
           +  PV+ S+ + P  L
Sbjct: 94  LDSPVKNSKHIAPFSL 109

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  180 bits (460), Expect = 5e-54
 Identities = 65/206 (31%), Positives = 86/206 (41%), Gaps = 17/206 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG LI  N+V+TAAHC    +     V  G         T     V++   HP Y T 
Sbjct: 29  FCGGFLIRRNFVLTAAHCAGRSI----TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTS 84

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
                HDI LLK+      +  +         N   P      +G+G+        S  L
Sbjct: 85  TLH--HDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGV-LKPGSDTL 141

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L +++   CS       + QLC       K   +GDSGGPL      LC     GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 195

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYG     A  PA++TR+S+Y PWI
Sbjct: 196 VSYG--RSDAKPPAVFTRISHYRPWI 219

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG+  K    P+ A +  V   G  K    FCGG LI  N+V+TAAHC    +
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGPSK----FCGGFLIRRNFVLTAAHCAGRSI 51

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC    +     V  G         T     V++   HP Y T      HDI LLK+ 
Sbjct: 43  AAHCAGRSI----TVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLH--HDIMLLKLK 96

Query: 66  PPVEFSETLKPACL 79
                +  +     
Sbjct: 97  EKASLTLAVGTLPF 110

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  180 bits (460), Expect = 1e-53
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 18/217 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLIT-KLSYSVTDNIHRVMQNILHPNYT 338
            CGG+LI+PN+V+TAAHCI++ L    Y V  G    ++          V    +H  + 
Sbjct: 42  TCGGTLITPNHVLTAAHCISNTL---TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWN 98

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNYFDTKESL 396
           +      +DIAL+K+A  VE  +T++ ACL +    +        +G+G+L   +   + 
Sbjct: 99  SFLVR--NDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYT-NGPIAA 155

Query: 397 RLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            L + +  +++  TCS+++   TT+  + +CA    G    C GDSGGPL         +
Sbjct: 156 ELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNC--QADGQW 212

Query: 454 NIIGITS--YGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           ++ GI S   G  C     P ++TRVS Y+ WI   +
Sbjct: 213 DVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 6   AAHCITSPLGKPRY-VRFGLIT-KLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
           AAHCI++ L    Y V  G    ++          V    +H  + +      +DIAL+K
Sbjct: 56  AAHCISNTL---TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVR--NDIALIK 110

Query: 64  IAPPVEFSETLKPACL-NRAHNVKSPT-AIASGFGKLNY 100
           +A  VE  +T++ ACL +    +        +G+G+L  
Sbjct: 111 LAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYT 149

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITSP 245
           ++GG  A    +P Q  + ++ +        W   CGG+LI+PN+V+TAAHCI++ 
Sbjct: 14  VVGGEDAIPHSWPWQISLQYLRDNT------WRHTCGGTLITPNHVLTAAHCISNT 63

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  179 bits (457), Expect = 1e-53
 Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 19/207 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+  ++V+TAAHC  S +     V  G         T       + I HP Y   
Sbjct: 28  RCGGFLVREDFVLTAAHCWGSNI----NVTLGAHNIQRRENTQQHITARRAIRHPQYNQR 83

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
                +DI LL+++  V  +  + P  L RA     P      +G+G+++    + +  L
Sbjct: 84  TIQ--NDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS--MRRGTDTL 139

Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +V L +  +  C +   +     Q+C       K   +GDSGGPL      LC     G
Sbjct: 140 REVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPL------LCNNVAHG 193

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWI 484
           I SYG+  G    P ++TRVS ++PWI
Sbjct: 194 IVSYGKSSG--VPPEVFTRVSSFLPWI 218

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG  ++    P+ A +      G     +  CGG L+  ++V+TAAHC  S +
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAG-----QSRCGGFLVREDFVLTAAHCWGSNI 50

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  S +     V  G         T       + I HP Y        +DI LL+++
Sbjct: 42  AAHCWGSNI----NVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQ--NDIMLLQLS 95

Query: 66  PPVEFSETLKPACL 79
             V  +  + P  L
Sbjct: 96  RRVRRNRNVNPVAL 109

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  185 bits (472), Expect = 2e-53
 Identities = 64/229 (27%), Positives = 88/229 (38%), Gaps = 22/229 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSV-TDNIHRVMQNIL 333
            CG SLIS  +V+TAAHC+  P     +      VR G  ++  Y    + I  + +  +
Sbjct: 192 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 251

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPT---AIASGFGKLN 388
           HP Y         DIAL+K+  PV FS+ + P CL                  +G+G L 
Sbjct: 252 HPRYNWRENL-DRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 310

Query: 389 YFDTKESLR-----LMKVVLDIINNDTCSKQETTLISSQ-LCA---TVMAGGKDTCQGDS 439
              T    +     L  V L I+    C       I+    CA          D C+GDS
Sbjct: 311 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 370

Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GGP     P    +  +GI S+G  C        YT V     WI   +
Sbjct: 371 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 419

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 6   AAHCITSPLGKPRY------VRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHD 58
           AAHC+  P     +      VR G  ++  Y    + I  + +  +HP Y         D
Sbjct: 206 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL-DRD 264

Query: 59  IALLKIAPPVEFSETLKPACL--NRAHNVKSPT---AIASGFGKLNYFECTQYS 107
           IAL+K+  PV FS+ + P CL                  +G+G L         
Sbjct: 265 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG 318

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+ GS A+ G  P Q  +            +  CG SLIS  +V+TAAHC+  P
Sbjct: 166 IVEGSDAEIGMSPWQVMLFRKSPQ------ELLCGASLISDRWVLTAAHCLLYP 213

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  179 bits (457), Expect = 2e-53
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+  ++V+TAAHC+ S +     V  G    +    T  +  V + I HP+Y  E
Sbjct: 28  ICGGFLVREDFVLTAAHCLGSSI----NVTLGAHNIMERERTQQVIPVRRPIPHPDYNDE 83

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
             +  +DI LLK+    + ++ + P  L R+     P      +G+G+L   +   + +L
Sbjct: 84  TLA--NDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGV-NMPSTDKL 140

Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +V L++ + + C  +    I  +Q+CA   +  K++  GDSGGPL      +C     G
Sbjct: 141 QEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPL------VCNGVAQG 194

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWI 484
           I SYG       TP +YTR+S ++ WI
Sbjct: 195 IVSYG--RNDGTTPDVYTRISSFLSWI 219

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG  AK    P+ A + F   G         CGG L+  ++V+TAAHC+ S +
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGK-----SHICGGFLVREDFVLTAAHCLGSSI 50

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+ S +     V  G    +    T  +  V + I HP+Y  E  +  +DI LLK+ 
Sbjct: 42  AAHCLGSSI----NVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLA--NDIMLLKLT 95

Query: 66  PPVEFSETLKPACL 79
              + ++ + P  L
Sbjct: 96  RKADITDKVSPINL 109

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  180 bits (458), Expect = 2e-53
 Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 23/216 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY--- 337
            CGG L+  N+V+TAAHC          V  G    L    +D    V + I HP++   
Sbjct: 28  QCGGVLLDRNWVLTAAHCYNDKY----QVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMS 83

Query: 338 ------TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYF 390
                         +D+ LL+++ P + ++ +KP  L      K  +  +ASG+G     
Sbjct: 84  LLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITL-PTEEPKLGSTCLASGWGSTTPI 142

Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
             K    L  V L ++ N+ C K     +  + LCA  M GG  TC+ DSGGPL      
Sbjct: 143 KFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL------ 196

Query: 450 LCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
           +C   + GITS+G + CG    P++YT++  +  WI
Sbjct: 197 ICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWI 232

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
            +          P       V            CGG L+  N+V+TAAHC   
Sbjct: 4   PVQSQVDCENSQPWHV---AVYRFNKY-----QCGGVLLDRNWVLTAAHCYND 48

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY---------TTEGTSQY 56
           AAHC          V  G    L    +D    V + I HP++                 
Sbjct: 42  AAHCYNDKY----QVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYS 97

Query: 57  HDIALLKIAPPVEFSETLKPACL 79
           +D+ LL+++ P + ++ +KP  L
Sbjct: 98  NDLMLLRLSKPADITDVVKPITL 120

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  179 bits (456), Expect = 3e-53
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 23/220 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY--- 337
            CGG L+ P +V+TAAHCI +       +  G  +      T  + +V  +  HP Y   
Sbjct: 25  VCGGVLVHPQWVLTAAHCIRNKS----VILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMS 80

Query: 338 ------TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYF 390
                    G    HD+ LL+++ P E ++ +K   L         T   ASG+G +   
Sbjct: 81  LLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDL-PTQEPALGTTCYASGWGSIEPE 139

Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
           +     +L  V L +I+ND C++     +    LCA    GGK TC GDSGGPL      
Sbjct: 140 EFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPL------ 193

Query: 450 LCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           +C   + GITS+G + C     P++YT+V +Y  WI  T+
Sbjct: 194 VCNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI 233

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GG   +    P Q     V   G        CGG L+ P +V+TAAHCI +
Sbjct: 1   IVGGWECEKHSQPWQV---LVASRGRA-----VCGGVLVHPQWVLTAAHCIRN 45

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY---------TTEGTSQY 56
           AAHCI +       +  G  +      T  + +V  +  HP Y            G    
Sbjct: 39  AAHCIRNKS----VILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSS 94

Query: 57  HDIALLKIAPPVEFSETLKPACL 79
           HD+ LL+++ P E ++ +K   L
Sbjct: 95  HDLMLLRLSEPAELTDAVKVMDL 117

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  179 bits (456), Expect = 3e-53
 Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 23/216 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LI P++V+TAAHC ++       V  G               V Q+  HP+Y   
Sbjct: 23  LCGGVLIDPSWVITAAHCYSNNY----QVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPL 78

Query: 341 GTSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYF 390
             +           +D+ LL ++ P + +  +K   L      K  +  +ASG+G  N  
Sbjct: 79  IVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDL-PTKEPKVGSTCLASGWGSTNPS 137

Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
           +   S  L  V + +++N+ C +     +    LCA  M GGKDTC GDSGGPL      
Sbjct: 138 EMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPL------ 191

Query: 450 LCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           +C   + GITS G   C    TPAIY ++  +  WI
Sbjct: 192 ICDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWI 227

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I+GG + +    P Q     V            CGG LI P++V+TAAHC ++  
Sbjct: 1   IVGGYKCEKNSQPWQV---AVINEY-------LCGGVLIDPSWVITAAHCYSNNY 45

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 13/83 (15%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY--------- 56
           AAHC ++       V  G               V Q+  HP+Y     +           
Sbjct: 37  AAHCYSNNY----QVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHS 92

Query: 57  HDIALLKIAPPVEFSETLKPACL 79
           +D+ LL ++ P + +  +K   L
Sbjct: 93  NDLMLLHLSEPADITGGVKVIDL 115

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  178 bits (455), Expect = 4e-53
 Identities = 65/217 (29%), Positives = 95/217 (43%), Gaps = 24/217 (11%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY--- 337
            CGG L+   +V+TAAHCI+        +  G         T     V ++  HP +   
Sbjct: 25  QCGGILVHRQWVLTAAHCISDNY----QLWLGRHNLFDDENTAQFVHVSESFPHPGFNMS 80

Query: 338 ------TTEGTSQYHDIALLKIAPPVE-FSETLKPACLNRAHNVKSPTA-IASGFGKLNY 389
                         HD+ LL++  P +  ++ +K   L      +  +  +ASG+G +  
Sbjct: 81  LLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVEL-PTEEPEVGSTCLASGWGSIEP 139

Query: 390 FDTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
            +      L  V L I+ ND C K     +    LC   + GGKDTC GDSGGPL     
Sbjct: 140 ENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPL----- 194

Query: 449 DLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            +C   + G+TS+G   CG  N P++  RV  YV WI
Sbjct: 195 -MCDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWI 230

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I+GG   +    P QA    +    T       CGG L+   +V+TAAHCI+   
Sbjct: 1   IVGGWECEQHSQPWQA---ALYHFSTF-----QCGGILVHRQWVLTAAHCISDNY 47

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 14/84 (16%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY---------TTEGTSQY 56
           AAHCI+        +  G         T     V ++  HP +                 
Sbjct: 39  AAHCISDNY----QLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYS 94

Query: 57  HDIALLKIAPPVE-FSETLKPACL 79
           HD+ LL++  P +  ++ +K   L
Sbjct: 95  HDLMLLRLTEPADTITDAVKVVEL 118

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  178 bits (454), Expect = 4e-53
 Identities = 69/206 (33%), Positives = 90/206 (43%), Gaps = 17/206 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LIS  +V+TAAHC    +     V  G         T    +V + I+H +Y + 
Sbjct: 29  ICGGFLISRQFVLTAAHCKGREI----TVILGAHDVRKRESTQQKIKVEKQIIHESYNSV 84

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
                HDI LLK+   VE +  +    L    +   P A+  A+G+GK        S  L
Sbjct: 85  PNL--HDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGV-RDPTSYTL 141

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V L I++   C          Q+C       +    GDSGGPL      LC     GI
Sbjct: 142 REVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPL------LCAGVAHGI 195

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
            SYG     A  PAI+TRVS YVPWI
Sbjct: 196 VSYG--HPDAKPPAIFTRVSTYVPWI 219

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG  +     P+ A +  V E G        CGG LIS  +V+TAAHC    +
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRV----ICGGFLISRQFVLTAAHCKGREI 51

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC    +     V  G         T    +V + I+H +Y +      HDI LLK+ 
Sbjct: 43  AAHCKGREI----TVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNL--HDIMLLKLE 96

Query: 66  PPVEFSETLKPACL 79
             VE +  +    L
Sbjct: 97  KKVELTPAVNVVPL 110

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  178 bits (455), Expect = 4e-53
 Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 23/216 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+ P +V+TAAHC++        +  G         T   H+V  + L P +   
Sbjct: 25  QCGGVLVHPQWVLTAAHCMSDDY----QIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLS 80

Query: 341 GTSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYF 390
              +          HD+ LL++A P   ++ +K   L      K  +    SG+G ++ F
Sbjct: 81  LLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDL-PTQEPKLGSTCYTSGWGLISTF 139

Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
             + S  L  V L + +N+ C++     +    LCAT        C GDSGG L      
Sbjct: 140 TNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGAL------ 193

Query: 450 LCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           +C     GITS+G  +C   N   ++T+V  +  WI
Sbjct: 194 ICDGVFQGITSWGYSECADFNDNFVFTKVMPHKKWI 229

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG   +    P Q     V   G      + CGG L+ P +V+TAAHC++   
Sbjct: 1   IIGGWECEKHSKPWQV---AVYHQG-----HFQCGGVLVHPQWVLTAAHCMSDDY 47

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY--------- 56
           AAHC++        +  G         T   H+V  + L P +      +          
Sbjct: 39  AAHCMSDDY----QIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDIS 94

Query: 57  HDIALLKIAPPVEFSETLKPACL 79
           HD+ LL++A P   ++ +K   L
Sbjct: 95  HDLMLLRLAQPARITDAVKILDL 117

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  178 bits (454), Expect = 6e-53
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 23/216 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+  N+V+TAAHC          V  G         +     V ++  HP +   
Sbjct: 25  ICGGVLLDRNWVLTAAHCYVDQY----EVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMS 80

Query: 341 GTSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYF 390
                          D+ LL+++ P + ++ +KP  L      K  +  +ASG+G +   
Sbjct: 81  LLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIAL-PTKEPKPGSKCLASGWGSITPT 139

Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
             ++   L  V + ++ N+ C+K     +    LCA  M GGKDTC+ DSGGPL      
Sbjct: 140 RWQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPL------ 193

Query: 450 LCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
           +C   + G TSYG   CG    PAIYT +  +  WI
Sbjct: 194 ICDGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWI 229

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           ++GG   +    P Q  V    +          CGG L+  N+V+TAAHC   
Sbjct: 1   VVGGFNCEKNSQPWQ--VAVYYQKEH------ICGGVLLDRNWVLTAAHCYVD 45

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY--------- 56
           AAHC          V  G         +     V ++  HP +                 
Sbjct: 39  AAHCYVDQY----EVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFS 94

Query: 57  HDIALLKIAPPVEFSETLKPACL 79
            D+ LL+++ P + ++ +KP  L
Sbjct: 95  DDLMLLRLSKPADITDVVKPIAL 117

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  178 bits (453), Expect = 6e-53
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 18/212 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTT 339
            C G+LI+  +V+TAAHC    +     ++ G+ +K   +  + I               
Sbjct: 27  HCAGALINREWVLTAAHCDRRNI----RIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFP 82

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
            G     DI L+++  PV +S  + P  L              G+GK++   T       
Sbjct: 83  NGLD--KDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKIS--TTTYPDVPH 138

Query: 400 KVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
              + I+ +  C          S  LCA ++ GG+DTC GDSGGPL      +C   + G
Sbjct: 139 CTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPL------ICNGEMHG 192

Query: 458 ITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           I + G + CG    PA+YT+V  Y  WI   +
Sbjct: 193 IVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           ++GG      E P    V       +       C G+LI+  +V+TAAHC    +
Sbjct: 1   VVGGDECNINEHPFL--VALYTSASS----TIHCAGALINREWVLTAAHCDRRNI 49

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
           AAHC    +     ++ G+ +K   +  + I                G     DI L+++
Sbjct: 41  AAHCDRRNI----RIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLD--KDIMLIRL 94

Query: 65  APPVEFSETLKPACL 79
             PV +S  + P  L
Sbjct: 95  RRPVTYSTHIAPVSL 109

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  181 bits (461), Expect = 7e-53
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 27/230 (11%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             + GG+LI+  +V+TAAH +     +P         + S      +       +HP + 
Sbjct: 102 NPWAGGALINEYWVLTAAHVVEGNR-EPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWK 160

Query: 339 TEGTSQY-----HDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT---AIASGFGKLNY 389
                +      +DIAL+++  PV+   T+ P CL   + +         + SG+G+   
Sbjct: 161 LLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK 220

Query: 390 FDTKESLRLMKVVLDIINNDTCSKQETTLISSQ----------LCATVMAGGKDTCQGDS 439
            D   ++RL    L +     C + +    ++           +CA     G D+C+GDS
Sbjct: 221 RDR--AVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCKGDS 277

Query: 440 GGPLQTIMPDLC-MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GG      P+    +   G+ S+G QCG   T  +YTRV  YV WI+ T+
Sbjct: 278 GGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTM 324

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-----HDIA 60
           AAH +     +P         + S      +       +HP +      +      +DIA
Sbjct: 118 AAHVVEGNR-EPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIA 176

Query: 61  LLKIAPPVEFSETLKPACL-NRAHNVKSPT---AIASGFGKLNY 100
           L+++  PV+   T+ P CL   + +         + SG+G+   
Sbjct: 177 LVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK 220

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           IIGGS A    FP Q                 + GG+LI+  +V+TAAH +   
Sbjct: 83  IIGGSDADIKNFPWQVFFD-----------NPWAGGALINEYWVLTAAHVVEGN 125

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  177 bits (452), Expect = 8e-53
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG L+   +V+TAAHC    +     V  G     +   T  I  V + I HP+Y  +
Sbjct: 29  FCGGFLVRDKFVLTAAHCKGRSM----TVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPD 84

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
             S  +DI LLK+    + +  ++P  L R +    P      +G+GK+   D +    L
Sbjct: 85  DRS--NDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTP-DGEFPKTL 141

Query: 399 MKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            +V L +  +  C  Q   +   ++++C         + + DSGGPL      +C     
Sbjct: 142 HEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPL------VCKRAAA 195

Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
           GI SYG      + P ++TRV  +V WI
Sbjct: 196 GIVSYG--QTDGSAPQVFTRVLSFVSWI 221

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           IIGG+       P+ A   F++ GG       FCGG L+   +V+TAAHC   
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKM----FCGGFLVRDKFVLTAAHCKGR 49

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC    +     V  G     +   T  I  V + I HP+Y  +  S  +DI LLK+ 
Sbjct: 43  AAHCKGRSM----TVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRS--NDIMLLKLV 96

Query: 66  PPVEFSETLKPACL 79
              + +  ++P  L
Sbjct: 97  RNAKRTRAVRPLNL 110

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  177 bits (451), Expect = 1e-52
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 21/209 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN--IHRVMQNILHPNYT 338
           FC G L+ P +V++AAHC  +       +  G +  L         +     ++ HP Y 
Sbjct: 25  FCSGVLVHPQWVLSAAHCFQNSY----TIGLG-LHSLEADQEPGSQMVEASLSVRHPEYN 79

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
               +  +D+ L+K+   V  S+T++   +  +    +  + + SG+G L   + +    
Sbjct: 80  RPLLA--NDLMLIKLDESVSESDTIRSISI-ASQCPTAGNSCLVSGWGLLA--NGRMPTV 134

Query: 398 LMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  V + +++ + CSK    L   S  CA      KD+C GDSGGPL      +C   + 
Sbjct: 135 LQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPL------ICNGYLQ 188

Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
           G+ S+G+  CG    P +YT +  +  WI
Sbjct: 189 GLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           II G        P QA    +     +     FC G L+ P +V++AAHC  +  
Sbjct: 1   IINGEDCSPHSQPWQA---ALVMENEL-----FCSGVLVHPQWVLSAAHCFQNSY 47

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDN--IHRVMQNILHPNYTTEGTSQYHDIALLK 63
           AAHC  +       +  G +  L         +     ++ HP Y     +  +D+ L+K
Sbjct: 39  AAHCFQNSY----TIGLG-LHSLEADQEPGSQMVEASLSVRHPEYNRPLLA--NDLMLIK 91

Query: 64  IAPPVEFSETLKPACL 79
           +   V  S+T++   +
Sbjct: 92  LDESVSESDTIRSISI 107

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  176 bits (449), Expect = 2e-52
 Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 25/209 (11%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM--QNILHPNYT 338
           FCG +LI+PN+VM+AAHC+ +   +   V  G     + S  +   +V   Q I    Y 
Sbjct: 25  FCGATLIAPNFVMSAAHCVANVNVRAVRVVLG---AHNLSRREPTRQVFAVQRIFENGYD 81

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESL 396
                  +DI +L++      +  ++ A L             +A G+G L   +   + 
Sbjct: 82  PVNLL--NDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGR-NRGIAS 138

Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            L ++ + ++ +  C         S +C  V       C GDSG PL      +C   I 
Sbjct: 139 VLQELNVTVVTS-LCR-------RSNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184

Query: 457 GITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
           GI S+ R  C     P  +  V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
           I+GG RA+   +P       ++  G       FCG +LI+PN+VM+AAHC+ +  V  +
Sbjct: 1   IVGGRRARPHAWPFMV---SLQLRG-----GHFCGATLIAPNFVMSAAHCVANVNVRAV 51

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM--QNILHPNYTTEGTSQYHDIALLK 63
           AAHC+ +   +   V  G     + S  +   +V   Q I    Y        +DI +L+
Sbjct: 39  AAHCVANVNVRAVRVVLG---AHNLSRREPTRQVFAVQRIFENGYDPVNLL--NDIVILQ 93

Query: 64  IAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNY 100
           +      +  ++ A L             +A G+G L  
Sbjct: 94  LNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGR 132

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  176 bits (449), Expect = 2e-52
 Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG L+   +V+TAAHC          VR G  +  S    +   +V Q+I HP Y   
Sbjct: 25  ICGGVLVGDRWVLTAAHCKKQKY----SVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNS 80

Query: 341 GTSQY-HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
               + HDI L+++       + +KP  L           I SG+G +          L 
Sbjct: 81  NPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLN 140

Query: 400 KVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
              + I + + C +     I    +CA   + G DTCQGDSGGPL      +C   + GI
Sbjct: 141 CAEVKIYSQNKCERAYPGKITEGMVCAGS-SNGADTCQGDSGGPL------VCDGMLQGI 193

Query: 459 TSYGR-QCGHANTPAIYTRVSYYVPWI 484
           TS+G   CG    P +YT++  Y  WI
Sbjct: 194 TSWGSDPCGKPEKPGVYTKICRYTTWI 220

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 57.9 bits (141), Expect = 8e-10
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           I+ G        P QA    + +G      +  CGG L+   +V+TAAHC     
Sbjct: 1   ILEGRECIPHSQPWQA---ALFQGE-----RLICGGVLVGDRWVLTAAHCKKQKY 47

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-HDIALLKI 64
           AAHC          VR G  +  S    +   +V Q+I HP Y       + HDI L+++
Sbjct: 39  AAHCKKQKY----SVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRL 94

Query: 65  APPVEFSETLKPACL 79
                  + +KP  L
Sbjct: 95  QNSANLGDKVKPVQL 109

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  176 bits (448), Expect = 3e-52
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 20/213 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTT 339
           +CG  L+ P +++TAAHC          VR G  +          + + +++I HP Y+ 
Sbjct: 26  YCGAVLVHPQWLLTAAHCRKKVF----RVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSH 81

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR 397
            G S  +D+ L+K+   +  ++ ++P  +  + +  S     + SG+G            
Sbjct: 82  PGHS--NDLMLIKLNRRIRPTKDVRPINV--SSHCPSAGTKCLVSGWGTTKSPQVHFPKV 137

Query: 398 LMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  + + +++   C       I  +  CA     G+D+CQGDSGGP+      +C  ++ 
Sbjct: 138 LQCLNISVLSQKRCEDAYPRQIDDTMFCAGD-KAGRDSCQGDSGGPV------VCNGSLQ 190

Query: 457 GITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           G+ S+G   C   N P +YT +  +  WI  T+
Sbjct: 191 GLVSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           II GS       P QA +  +           +CG  L+ P +++TAAHC     
Sbjct: 1   IINGSDCDMHTQPWQAAL-LLRPNQL------YCGAVLVHPQWLLTAAHCRKKVF 48

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC          VR G  +          + + +++I HP Y+  G S  +D+ L+K+
Sbjct: 40  AAHCRKKVF----RVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHS--NDLMLIKL 93

Query: 65  APPVEFSETLKPACL 79
              +  ++ ++P  +
Sbjct: 94  NRRIRPTKDVRPINV 108

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  175 bits (447), Expect = 4e-52
 Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 19/208 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            CGG LI  ++V+TAAHC  S +     V  G         T     V + I HP Y  +
Sbjct: 28  RCGGFLIRDDFVLTAAHCWGSSI----NVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPK 83

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
             S  +DI LL++    + +  ++P  L        P  T   +G+G+      K S  L
Sbjct: 84  NFS--NDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAP-LGKHSHTL 140

Query: 399 MKVVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            +V + +  +  C          + +LC       K + +GDSGGPL      +C     
Sbjct: 141 QEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL------VCNKVAQ 194

Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
           GI SYGR       P   T+VS +V WI
Sbjct: 195 GIVSYGRNN--GMPPRACTKVSSFVHWI 220

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG  AK    P+ A +   ++          CGG LI  ++V+TAAHC  S +
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKS-----LKRCGGFLIRDDFVLTAAHCWGSSI 50

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  S +     V  G         T     V + I HP Y  +  S  +DI LL++ 
Sbjct: 42  AAHCWGSSI----NVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFS--NDIMLLQLE 95

Query: 66  PPVEFSETLKPACL 79
              + +  ++P  L
Sbjct: 96  RKAKRTRAVQPLRL 109

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  175 bits (447), Expect = 5e-52
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 32/216 (14%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            +CGGSLI   +++TAAHC+   +     V  G   +       N  R+   I H  +  
Sbjct: 28  VWCGGSLIDNKWILTAAHCVHDAVSV--VVYLGSAVQYEGEAVVNSERI---ISHSMFNP 82

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP----TAIASGFGKLNYFDTKES 395
              +  +D+AL+KI P VE+++ ++P  L     + +      A  SG+G+ N     ++
Sbjct: 83  --DTYLNDVALIKI-PHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSN----TDT 135

Query: 396 LRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
           + L      +I+ND C+++     ++ S +C    + GK  C GDSGGP         + 
Sbjct: 136 VILQYTYNLVIDNDRCAQEYPPGIIVESTICG-DTSDGKSPCFGDSGGPF--------VL 186

Query: 454 N----IIGITSYGRQCG-HANTPAIYTRVSYYVPWI 484
           +    +IG+ S+    G  +  P  ++RV+ Y+ WI
Sbjct: 187 SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           II G  A  G FP+QA +    +       + +CGGSLI   +++TAAHC+   
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQR----RVWCGGSLIDNKWILTAAHCVHDA 50

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+   +     V  G   +       N  R+   I H  +     +  +D+AL+KI 
Sbjct: 43  AAHCVHDAVSV--VVYLGSAVQYEGEAVVNSERI---ISHSMFNP--DTYLNDVALIKI- 94

Query: 66  PPVEFSETLKPACLNRAHNVKSP----TAIASGFGKLN 99
           P VE+++ ++P  L     + +      A  SG+G+ N
Sbjct: 95  PHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSN 132

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  175 bits (445), Expect = 1e-51
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            C G+LI+ ++V+TAAHC        R  V  G  +      T  I  V +   +P Y  
Sbjct: 25  ICAGALIAKDWVLTAAHCNL----NKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDP 80

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLR 397
                  D+ LL++    + ++ +    L +  +   P  +   +G+G+ +      S  
Sbjct: 81  ATRE--GDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHN-SASWSDT 137

Query: 398 LMKVVLDIINNDTCSKQET-----TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           L +V + II+   C+ +        +  + +CA  + GG+D+C GDSG PL      LC 
Sbjct: 138 LREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL------LCE 191

Query: 453 YNIIGITSYGRQ--CGHANTPAIYTRVS-YYVPWI 484
               G+TS+G +  CG    P +Y  +S  ++ WI
Sbjct: 192 GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWI 226

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           IIGG+       P+      +         K  C G+LI+ ++V+TAAHC  + 
Sbjct: 1   IIGGNEVTPHSRPYMV---LLSLDR-----KTICAGALIAKDWVLTAAHCNLNK 46

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC        R  V  G  +      T  I  V +   +P Y         D+ LL++
Sbjct: 39  AAHCNL----NKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATRE--GDLKLLQL 92

Query: 65  APPVEFSETLKPACL 79
               + ++ +    L
Sbjct: 93  TEKAKINKYVTILHL 107

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  173 bits (440), Expect = 2e-50
 Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 30/216 (13%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K FCGG +I  N+V+T A C      +   V+          +   I  V    +H  Y 
Sbjct: 76  KDFCGGVIIRENFVLTTAKCSLLH--RNITVKTYFNRTSQDPLMIKITHV---HVHMRYD 130

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNYFDTK 393
            +     +D++LL++  P++      P C    + A ++  P    + SG+ +     T 
Sbjct: 131 ADAGE--NDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNG---TD 185

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
               L    + ++  + C +     ++++  C               G  +         
Sbjct: 186 LGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCE---RSSVAAMHWMDGSVV------TRE 236

Query: 453 YN----IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +     + G+       G      + T+VS Y  W 
Sbjct: 237 HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 271

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
            A C      +   V+          +   I  V    +H  Y  +     +D++LL++ 
Sbjct: 92  TAKCSLLH--RNITVKTYFNRTSQDPLMIKITHV---HVHMRYDADAGE--NDLSLLELE 144

Query: 66  PPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLN 99
            P++      P C    + A ++  P    + SG+ +  
Sbjct: 145 WPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNG 183

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 154 QCTQYSKIQDESPI---ALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVG 210
            C  +     ES     A    L    +            +          + P Q ++ 
Sbjct: 12  GCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKL- 70

Query: 211 FVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
                 T  + K FCGG +I  N+V+T A C    
Sbjct: 71  ------TNSEGKDFCGGVIIRENFVLTTAKCSLLH 99

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  172 bits (439), Expect = 7e-50
 Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 30/216 (13%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K FCGG +I  N+V+T A C      +   V+          +   I  V    +H  Y 
Sbjct: 117 KDFCGGVIIRENFVLTTAKCSLLH--RNITVKTYFNRTSQDPLMIKITHV---HVHMRYD 171

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLNYFDTK 393
            +     +D++LL++  P++      P C    + A ++  P    + SG+ +     T 
Sbjct: 172 ADAGE--NDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNG---TD 226

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
               L    + ++  + C +     ++++  C               G  +         
Sbjct: 227 LGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCE---RSSVAAMHWMDGSVV------TRE 277

Query: 453 YN----IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +     + G+       G      + T+VS Y  W 
Sbjct: 278 HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 312

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
            A C      +   V+          +   I  V    +H  Y  +     +D++LL++ 
Sbjct: 133 TAKCSLLH--RNITVKTYFNRTSQDPLMIKITHV---HVHMRYDADAGE--NDLSLLELE 185

Query: 66  PPVEFSETLKPACL---NRAHNVKSP--TAIASGFGKLN 99
            P++      P C    + A ++  P    + SG+ +  
Sbjct: 186 WPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNG 224

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 190 PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
            +          + P Q  V      G     K FCGG +I  N+V+T A C    
Sbjct: 92  VLTSEKRAPDLQDLPWQ--VKLTNSEG-----KDFCGGVIIRENFVLTTAKCSLLH 140

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  169 bits (431), Expect = 8e-50
 Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 21/207 (10%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGG+LI P++V+TAAHC+     +   V  G     +   T     V Q  L+  Y  E
Sbjct: 28  FCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNN-YDAE 86

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLRL 398
                +DI L++++ P   S ++    L +           +A G+G++       +  L
Sbjct: 87  NKL--NDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGA-HDPPAQVL 143

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            ++ + ++    C           +C  V       C GDSGGPL      +C   I GI
Sbjct: 144 QELNVTVVTF-FCR-------PHNICTFVPRRKAGICFGDSGGPL------ICDGIIQGI 189

Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWI 484
            S+    C     P  +TRV+ YV WI
Sbjct: 190 DSFVIWGCATRLFPDFFTRVALYVDWI 216

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
           I+GG  A+    P+ A +      G       FCGG+LI P++V+TAAHC+       +
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPG-----SHFCGGTLIHPSFVLTAAHCLRDIPQRLV 54

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+     +   V  G     +   T     V Q  L+  Y  E     +DI L++++
Sbjct: 42  AAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNN-YDAENKL--NDILLIQLS 98

Query: 66  PPVEFSETLKPACL 79
            P   S ++    L
Sbjct: 99  SPANLSASVATVQL 112

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  178 bits (454), Expect = 9e-50
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 12/215 (5%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTT 339
            CGG  I   +++TAAHC+ +       +   ++  +   +    I  V + I H NY  
Sbjct: 346 TCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNA 405

Query: 340 EGTSQYHDIALLKIAPPVEFSETL----KPACL-NRAHNVKSPT-AIASGFGKLNYFDTK 393
                 +DIAL+++       +       PAC+    +  +     I SG+G+    +  
Sbjct: 406 GTYQ--NDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERV 463

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            SL+     + +I+N +             CA    G  D C+GDSGGPL  +  +   Y
Sbjct: 464 FSLQ--WGEVKLISNCSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTY 521

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + G+ S+G  CG    P +YT+V+ Y  WI + V
Sbjct: 522 -VWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
           AAHC+ +       +   ++  +   +    I  V + I H NY        +DIAL+++
Sbjct: 360 AAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQ--NDIALIEM 417

Query: 65  APPVEFSETL----KPACL-NRAHNVKSPT-AIASGFGKLNY 100
                  +       PAC+    +  +     I SG+G+   
Sbjct: 418 KKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKD 459

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  173 bits (440), Expect = 8e-47
 Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 18/214 (8%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           FCGG+LISP +V+TAAHC+        Y V  G   +++         V +  L P    
Sbjct: 587 FCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR-- 644

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNYFDTKESLR 397
                  DIALLK++ P   ++ + PACL +  + V   T    +G+G+     T  +  
Sbjct: 645 ------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGL 696

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L +  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL     D   Y 
Sbjct: 697 LKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYI 754

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + G+TS+G  C   N P +Y RVS +V WI   +
Sbjct: 755 LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 5   HAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
            AAHC+        Y V  G   +++         V +  L P           DIALLK
Sbjct: 600 TAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR--------KDIALLK 651

Query: 64  IAPPVEFSETLKPACL 79
           ++ P   ++ + PACL
Sbjct: 652 LSSPAVITDKVIPACL 667

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 152 PHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGF 211
           P +   Y  +   +  +                       ++GG  A    +P Q  +  
Sbjct: 529 PRKLYDYCDVPQCAAPSFDC-------GKPQVEPKKCPGRVVGGCVAHPHSWPWQVSL-- 579

Query: 212 VEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
                  +    FCGG+LISP +V+TAAHC+   
Sbjct: 580 -----RTRFGMHFCGGTLISPEWVLTAAHCLEKS 608

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  162 bits (411), Expect = 3e-44
 Identities = 51/253 (20%), Positives = 96/253 (37%), Gaps = 59/253 (23%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            C G+++S  +V+TAAHC T    +    V  G   +           +   + HPNY  
Sbjct: 243 SCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRD--------LEIEVVLFHPNYNI 294

Query: 340 EGTSQ-------YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI-------ASGFG 385
            G  +        +D+AL+K+   +++ +T++P CL           +            
Sbjct: 295 NGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEE 354

Query: 386 KLNY------FDTKESLRLMKVVLDIINNDTCS---------------KQETTLISSQ-L 423
            L        F ++E  +L +  + I N D                  K  + +++ + L
Sbjct: 355 LLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFL 414

Query: 424 CATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG----------HANTP 471
           C   ++     +TC+GDSGGPL  I+     +  +G+ S+G               A+  
Sbjct: 415 CTGGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHAR 472

Query: 472 AIYTRVSYYVPWI 484
             +  +   +PW+
Sbjct: 473 DFHINLFQVLPWL 485

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQ-------YH 57
           AAHC T    +    V  G   +           +   + HPNY   G  +        +
Sbjct: 257 AAHCFTVDDKEHSIKVSVGGEKRD--------LEIEVVLFHPNYNINGKKEAGIPEFYDY 308

Query: 58  DIALLKIAPPVEFSETLKPACL 79
           D+AL+K+   +++ +T++P CL
Sbjct: 309 DVALIKLKNKLKYGQTIRPICL 330

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 194 GGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
                 Y + P QA++  +      +     C G+++S  +V+TAAHC T   
Sbjct: 217 HRKGTDYHKQPWQAKISVIRPSKGHE----SCMGAVVSEYFVLTAAHCFTVDD 265

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  150 bits (380), Expect = 6e-40
 Identities = 48/256 (18%), Positives = 85/256 (33%), Gaps = 59/256 (23%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            C G+LIS  +V+TAAHC         + V  G   K  +        + + ++ P +  
Sbjct: 248 TCRGALISDQWVLTAAHCFRDGNDHSLWRVNVG-DPKSQWGKE---FLIEKAVISPGFDV 303

Query: 340 EGTSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTA-IASGFG 385
                         DIALLK+A  V+ S   +P CL      N A      +        
Sbjct: 304 FAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENE 363

Query: 386 KLNYFDTK-ESLRLMKVVLDI-----INNDTCSKQ-------------ETTLISSQ-LCA 425
            LN        + L    L+I     +   +C++                 +++ Q LC+
Sbjct: 364 LLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCS 423

Query: 426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-----------------RQCGHA 468
                 +  C+G+SGG +   +     +  +G+ S+G                  +    
Sbjct: 424 GTQ-EDESPCKGESGGAV--FLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVP 480

Query: 469 NTPAIYTRVSYYVPWI 484
                +  +    PW+
Sbjct: 481 PPRDFHINLFRMQPWL 496

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 63.1 bits (153), Expect = 9e-11
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-------H 57
           AAHC         + V  G   K  +        + + ++ P +                
Sbjct: 262 AAHCFRDGNDHSLWRVNVG-DPKSQWGKE---FLIEKAVISPGFDVFAKKNQGILEFYGD 317

Query: 58  DIALLKIAPPVEFSETLKPACL 79
           DIALLK+A  V+ S   +P CL
Sbjct: 318 DIALLKLAQKVKMSTHARPICL 339

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  152 bits (386), Expect = 8e-40
 Identities = 54/253 (21%), Positives = 96/253 (37%), Gaps = 59/253 (23%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            C G+++S  +V+TAAHC T    +    V  G               +   + HPNY  
Sbjct: 485 SCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGG--------EKRDLEIEVVLFHPNYNI 536

Query: 340 EGTSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTA-IASGFG 385
            G  +        +D+AL+K+   +++ +T++P CL       RA  +   T        
Sbjct: 537 NGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEE 596

Query: 386 KLN------YFDTKESLRLMKVVLDIINNDTCS---------------KQETTLISSQ-L 423
            L        F ++E  +L +  + I N D                  K  + +++ + L
Sbjct: 597 LLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFL 656

Query: 424 CA--TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG----------HANTP 471
           C          +TC+GDSGGPL  I+     +  +G+ S+G               A+  
Sbjct: 657 CTGGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHAR 714

Query: 472 AIYTRVSYYVPWI 484
             +  +   +PW+
Sbjct: 715 DFHINLFQVLPWL 727

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 62.0 bits (150), Expect = 3e-10
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 6   AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-------H 57
           AAHC T    +    V  G               +   + HPNY   G  +        +
Sbjct: 499 AAHCFTVDDKEHSIKVSVGG--------EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDY 550

Query: 58  DIALLKIAPPVEFSETLKPACL 79
           D+AL+K+   +++ +T++P CL
Sbjct: 551 DVALIKLKNKLKYGQTIRPICL 572

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  126 bits (320), Expect = 8e-35
 Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 346 HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESL--RLMKVVL 403
           HD+ LL++  P + ++ +K   L         T  ASG+G +            +  V L
Sbjct: 8   HDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQL 67

Query: 404 DIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
            ++ N  C+      ++   LCA  + GGKDTC GDSGGPL      +C     GITS+G
Sbjct: 68  TLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPL------ICNGMWQGITSWG 121

Query: 463 R-QCGHANTPAIYTRVSYYVPWI 484
              CG AN P+IYT++ +Y+ WI
Sbjct: 122 HTPCGSANKPSIYTKLIFYLDWI 144

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score = 99.1 bits (248), Expect = 2e-25
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 397 RLMKVVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           RL +  L +++N  C K   T I    +CA   A G  +C GDSGGPL  +      + +
Sbjct: 6   RLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTL 61

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           +GI S+G      +TP +Y RV+  V W+  T+
Sbjct: 62  VGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 93.8 bits (234), Expect = 5e-23
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
           FCGGSLI+ N+V+TAAHC  +       V  G   + S S      ++ +   +  Y + 
Sbjct: 26  FCGGSLINENWVVTAAHCGVTTS---DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSL 82

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNY 389
             +  +DI LLK++    FS+T+   CL + + +  + T  + +G+G   Y
Sbjct: 83  TIN--NDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC  +       V  G   + S S      ++ +   +  Y +   +  +DI LLK++
Sbjct: 40  AAHCGVTTS---DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTIN--NDITLLKLS 94

Query: 66  PPVEFSETLKPACL-NRAHNVKSPTA-IASGFGKLNY 100
               FS+T+   CL + + +  + T  + +G+G   Y
Sbjct: 95  TAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 11/56 (19%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITSP 245
           I+ G  A  G +P Q          +++D     FCGGSLI+ N+V+TAAHC  + 
Sbjct: 1   IVNGEEAVPGSWPWQV---------SLQDKTGFHFCGGSLINENWVVTAAHCGVTT 47

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 81.9 bits (202), Expect = 5e-18
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 41/224 (18%)

Query: 266 VGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI 325
           + ++  GG+       C G+LI+PN ++T  HC+ +   +    +  +   ++ S   N 
Sbjct: 22  IAYITFGGS------SCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNG 75

Query: 326 HRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFG 385
              M     P+      +  +D A++K    +    T+    + +  N+   T   SG+ 
Sbjct: 76  SANMTEFYVPSGYINTGASQYDFAVIKTDTNI--GNTVGYRSIRQVTNLTGTTIKISGYP 133

Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQT 445
                 T         +   +  +                 +     DT  G+SG     
Sbjct: 134 GDKMRST--GKVSQWEMSGSVTREDT--------------NLAYYTIDTFSGNSGSA--- 174

Query: 446 IMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVS-YYVPWI 484
                 M +    I+G+ + G   G  N      + +  +V +I
Sbjct: 175 ------MLDQNQQIVGVHNAGYSNGTING---GPKATAAFVEFI 209

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 60.6 bits (148), Expect = 5e-12
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
           IIGG   +    P Q     +          + CGG L++P +V+TAAHC     
Sbjct: 1   IIGGRECEKNSHPWQV---AIYHYS-----SFQCGGVLVNPKWVLTAAHCKNDNY 47

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 56.7 bits (138), Expect = 1e-10
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
            CGG L++P +V+TAAHC          V  G         T     V  +  HP +
Sbjct: 25  QCGGVLVNPKWVLTAAHCKNDNY----EVWLGRHNLFENENTAQFFGVTADFPHPGF 77

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 57.8 bits (139), Expect = 9e-10
 Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 23/187 (12%)

Query: 281 FCGGSLI---SPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
            C  +++   + + V TA HC+    G      F       Y  +++     + ++    
Sbjct: 22  VCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVTSAE 81

Query: 338 TTEGTSQYHDIALLKIAPPV--EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKES 395
                   HD A   +         + +  A     +  +     A G+     F+    
Sbjct: 82  WANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNG--- 138

Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
                                T  +  + ++      +   G SGGP    + +      
Sbjct: 139 -------------QELHSCHGTATNDPMGSSTQGIPCNMTGGSSGGPW--FLGNGTGGAQ 183

Query: 456 IGITSYG 462
               SYG
Sbjct: 184 NSTNSYG 190

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 266 VGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI 325
           V +++         +   G ++  + ++T  H + +  G P  ++         +  +  
Sbjct: 22  VTYIQ--VEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGG 79

Query: 326 HRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE 358
               Q            S   D+A++K +P  +
Sbjct: 80  FTAEQIT--------KYSGEGDLAIVKFSPNEQ 104

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 4/43 (9%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 202 EFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
              +   V +++         +   G ++  + ++T  H + +
Sbjct: 16  NGHYAP-VTYIQ--VEAPTGTFIASGVVVGKDTLLTNKHVVDA 55

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A* Length = 268

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 38/230 (16%), Positives = 61/230 (26%), Gaps = 38/230 (16%)

Query: 266 VGFLEEGGTMKDVKWFCGGSLISP------NYVMTAAHCITSPLGKPRYVRFGLI----- 314
           VG   + GT       C GSL++        Y +TA HC          +          
Sbjct: 25  VGAYSKSGT-----LACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNST 79

Query: 315 -TKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN 373
               +   +        +      T + T    D  LL++      +  L  A  +R   
Sbjct: 80  CRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFWAGWDRRDQ 139

Query: 374 V-KSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK 432
                 AI                   K + +  +  +         ++ L       G 
Sbjct: 140 NYPGAIAIHHPNVAE------------KRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGG 187

Query: 433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCG--HANTPAIYTRVSY 479
            T  G SG P+ +         ++G    G   C     N    Y RV  
Sbjct: 188 VTEPGSSGSPIYSP-----EKRVLGQLHGGPSSCSATGTNRSDQYGRVFT 232

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 36/170 (21%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +   G ++  + ++T  H + +  G P  ++         +  +      Q         
Sbjct: 34  FIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQIT------- 86

Query: 340 EGTSQYHDIALLKIAPPVE---FSETLKPACLNRAHNVKS-PTAIASG--FGKLNYFDTK 393
              S   D+A++K +P  +     E +KPA ++     +       +G    K       
Sbjct: 87  -KYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK------- 138

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPL 443
             +  M       +    +  +   +   L          T  G+SG P+
Sbjct: 139 -PVATM-----WESKGKITYLKGEAMQYDL---------STTGGNSGSPV 173

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Length = 246

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 48/190 (25%)

Query: 284 GSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTS 343
           G LI  N ++T  H        P  + F           +      +        +    
Sbjct: 52  GVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQ 111

Query: 344 QYHDIALLKIAPPVE---FSETLKPACLNRAHNVKSP-TAIASG--FGKLNYFDTKESLR 397
              D+A++K+ P  +     + ++PA +    ++         G  +       +  SL 
Sbjct: 112 GL-DLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNY-----SAYSLY 165

Query: 398 LMKV-VLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN-- 454
             ++ + +                             T  G+SG  +         +N  
Sbjct: 166 QSQIEMFNDSQYFG----------------------YTEVGNSGSGI---------FNLK 194

Query: 455 --IIGITSYG 462
             +IGI S  
Sbjct: 195 GELIGIHSGK 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 9e-04
 Identities = 66/430 (15%), Positives = 109/430 (25%), Gaps = 136/430 (31%)

Query: 8   HCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP 67
           H I S       +R  L   L     + + + ++ +L  NY     S             
Sbjct: 53  HIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMT 109

Query: 68  VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPA---LVGG 124
             + E       +R +N          F K N      Y K++ ++ + L PA   L+ G
Sbjct: 110 RMYIE-----QRDRLYNDNQV------FAKYNVSRLQPYLKLR-QALLELRPAKNVLIDG 157

Query: 125 VRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVR-TQ 183
                         +   GS    G+                          + ++    
Sbjct: 158 --------------V--LGS----GK---TWVALDVCLSYKVQCKMD---FKIFWLNLKN 191

Query: 184 CDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCIT 243
           C+                                ++ ++       I PN+   + H   
Sbjct: 192 CN---------------------------SPETVLEMLQKLL--YQIDPNWTSRSDHSSN 222

Query: 244 SPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTA--AHCITS 301
             L    ++A LR LL     E   L     + +V         +      A    C   
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLL----VLLNV-Q-------NAK-AWNAFNLSCKI- 268

Query: 302 PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSE 361
                      L+T     VTD         L    TT        I+L   +  +   E
Sbjct: 269 -----------LLTTRFKQVTD--------FLSAATTTH-------ISLDHHSMTLTPDE 302

Query: 362 TL---------KPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTC 411
                      +P  L        +P  + S           ES+R      D   +  C
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTT-NPRRL-SIIA--------ESIRDGLATWDNWKHVNC 352

Query: 412 SKQETTLISS 421
            K  T + SS
Sbjct: 353 DKLTTIIESS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.97
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.96
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.96
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.93
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.93
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.92
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.92
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.92
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.92
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	99.9
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	99.9
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	99.9
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	99.9
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	99.9
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	99.9
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	99.9
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	99.9
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	99.89
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	99.89
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	99.89
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	99.89
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	99.89
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	99.89
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	99.89
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	99.89
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	99.89
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	99.89
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	99.88
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	99.88
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	99.88
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	99.88
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	99.88
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	99.88
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	99.88
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	99.88
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	99.88
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	99.88
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	99.88
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	99.88
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	99.88
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	99.88
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	99.87
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	99.87
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	99.87
1aut_C	250	Activated protein C; serine proteinase, plasma cal	99.87
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.87
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	99.87
2aiq_A	231	Protein C activator; snake venom serine proteinase	99.87
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	99.87
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	99.87
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	99.87
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	99.87
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	99.87
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	99.87
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	99.87
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	99.87
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	99.87
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	99.87
1a7s_A	225	Heparin binding protein; serine protease homolog,	99.86
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	99.86
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	99.86
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	99.86
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	99.86
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	99.86
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	99.86
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	99.86
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	99.86
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	99.86
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	99.86
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	99.86
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.85
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	99.85
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	99.85
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	99.85
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	99.85
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	99.85
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	99.85
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	99.85
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	99.85
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	99.85
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.85
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.84
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	99.84
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	99.84
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.84
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	99.84
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.83
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	99.83
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	99.83
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	99.82
1md8_A	329	C1R complement serine protease; innate immunity, a	99.82
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	99.82
1elv_A	333	Complement C1S component; trypsin-like serin prote	99.82
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	99.82
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	99.82
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	99.81
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	99.8
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	99.8
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.8
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	99.8
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.8
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.79
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.77
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.74
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	99.72
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.69
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.69
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.68
3k6y_A	237	Serine protease, possible membrane-associated seri	99.64
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.62
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.59
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.58
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.53
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.53
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.5
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.47
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.42
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.42
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.35
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.32
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.29
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.28
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.28
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.24
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.22
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.1
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.06
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.03
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.9
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	98.87
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.85
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	98.83
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	98.79
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.67
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	98.64
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.63
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	98.48
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.36
3k6y_A	237	Serine protease, possible membrane-associated seri	98.29
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	98.08
2w5e_A	163	Putative serine protease; coiled coil, transmembra	98.07
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	97.94
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	97.94
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	97.93
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	97.89
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.87
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.77
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.73
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.73
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	97.68
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	97.62
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.31
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	97.3
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.21
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	96.51
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	96.15
1hpg_A	187	Glutamic acid specific protease; serine protease,	95.84
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	95.65
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	95.55
2w5e_A	163	Putative serine protease; coiled coil, transmembra	93.59
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	93.11
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	92.54
3syj_A	1011	Adhesion and penetration protein autotransporter;	92.37
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	91.23
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	90.7
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	89.39
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	87.31

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=2.2e-48  Score=368.10  Aligned_cols=202  Identities=32%  Similarity=0.577  Sum_probs=172.6

Q ss_pred             EeEEEEEeCCEEEecCCCCCCC---CCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         281 FCGGSLISPNYVMTAAHCITSP---LGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       281 ~C~GtLIs~~~VLTAAhCv~~~---~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      +|+||||+++||||||||+...   ....+.|++|.. +....... ....|+++++||+|+.  ....||||||+|++|
T Consensus        29 ~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~~  105 (237)
T 2f91_A           29 FCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGEL-DMSVNEGSEQIITVSKIILHENFDY--NLLDNDISLLKLSGS  105 (237)
T ss_dssp             EEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCS-BTTSCCSCCEEEEEEEEEECTTCCT--TTCTTCCEEEEESSC
T ss_pred             eEEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCe-eccCCCCccEEEEEEEEEECCCCCC--CCCCCcEEEEEECCC
Confidence            4999999999999999999764   345688999987 33322222 3445999999999987  677899999999999


Q ss_pred             cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC--CCCCCcEEEEeCCCCcCC
Q psy3170         357 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDT  434 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~--~~~~~~~Ca~~~~~~~~~  434 (525)
                      +.|+++++|||||......+..++++|||.+...+ ..+..|+++.+++++.++|+..+.  .+.+.|||++...++.+.
T Consensus       106 v~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~  184 (237)
T 2f91_A          106 LTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGG-NTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDS  184 (237)
T ss_dssp             CCCBTTBCCCBCCCTTCCCCSEEEEEESCCSSTTC-CCCSBCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBC
T ss_pred             cccCCceeeccCCCCCCCCCCcEEEEECCcCCCCC-CccceeeEEEEeEcCHHHhhhhhCCCCcCCCeEEEecCCCCCCC
Confidence            99999999999998777778899999999886554 457789999999999999988764  367889999876667899


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |.|||||||++..++  +|+|+||+|||..|+.++.|++||||+.|++||+++|
T Consensus       185 C~GDSGgPL~~~~~~--~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          185 CQGDSGGPLAASDTG--STYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             CTTCTTCEEEECTTS--SCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             CCCcCCCCeEEecCC--CEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHhc
Confidence            999999999986544  8999999999999997789999999999999999876

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=1.3e-48  Score=372.53  Aligned_cols=212  Identities=30%  Similarity=0.603  Sum_probs=172.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.+ +....... ....|.++++||+|+.  ....||||||+|++|+
T Consensus        24 ~~~CgGsLI~~~~VLTAAHC~~~--~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~~v   98 (250)
T 1aut_C           24 KLACGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEY-DLRRWEKWELDLDIKEVFVHPNYSK--STTDNDIALLHLAQPA   98 (250)
T ss_dssp             CEEEEEEEEETTEEEECGGGSSS--CSCCEEEESCC-BTTCCCTTCEEEEEEEEEECTTCBT--TTTBTCCEEEEESSCC
T ss_pred             ceEEEEEEeeCCEEEEChHHcCC--CCceEEEEccc-ccCCCCCccEEEEEEEEEECCCCCC--CCCCCcEEEEEECCcc
Confidence            58899999999999999999975  45688999987 43332222 3444999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCC------CCCCCcEEEEEeeeccCCCCcc----cccceEEEEEeeChhhhhcccCC-CCCCcEEEE
Q psy3170         358 EFSETLKPACLNRAH------NVKSPTAIASGFGKLNYFDTKE----SLRLMKVVLDIINNDTCSKQETT-LISSQLCAT  426 (525)
Q Consensus       358 ~~~~~v~picL~~~~------~~~~~~~~~~Gwg~~~~~~~~~----~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~  426 (525)
                      .|+++++|||||...      ...+..++++|||.+.......    ...|+++.+++++.++|.+.+.. +.+.|||++
T Consensus        99 ~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~Cag  178 (250)
T 1aut_C           99 TLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAG  178 (250)
T ss_dssp             CCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEC
T ss_pred             cCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHHHhhHHhccCCCCCEEEeC
Confidence            999999999999753      2467899999999876543211    24799999999999999987754 678899998


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccCCCc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS  497 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~~~~  497 (525)
                      ...++.+.|.|||||||++..++  +|+|+||+|||.+|+..+.|++||||+.|++||+++|.....|..+
T Consensus       179 ~~~~~~~~C~GDSGGPL~~~~~g--~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~~~~~~~  247 (250)
T 1aut_C          179 ILGDRQDACEGDSGGPMVASFHG--TWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKS  247 (250)
T ss_dssp             CTTCCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC--------
T ss_pred             CCCCCCCCCCCCCchheEEEECC--eEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhhcccCCccc
Confidence            76667899999999999997654  8999999999999987788999999999999999999876666544

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=2.6e-48  Score=369.17  Aligned_cols=227  Identities=31%  Similarity=0.551  Sum_probs=190.4

Q ss_pred             CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeee
Q psy3170         190 PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFL  269 (525)
Q Consensus       190 ~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (525)
                      .||+||.++..++|||+|+|....                                                        
T Consensus        14 ~rIvgG~~a~~~~~Pw~v~l~~~~--------------------------------------------------------   37 (245)
T 1t8o_A           14 SRIVNGEEAVPGSWPWQVSLQDKT--------------------------------------------------------   37 (245)
T ss_dssp             --CBTCEECCTTSSTTEEEEECTT--------------------------------------------------------
T ss_pred             CceECCEECCCCCCCceEEEEcCC--------------------------------------------------------
Confidence            589999999999999999996521                                                        


Q ss_pred             ecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccc-ccceEEEEEEEeCCCCCCCCCCcccce
Q psy3170         270 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHDI  348 (525)
Q Consensus       270 ~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~~~DI  348 (525)
                              ..++|+||||+++||||||||+..   ....|++|.+ ...... ......|.++++||+|+.  ....|||
T Consensus        38 --------~~~~CgGtLI~~~~VLTAAHC~~~---~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DI  103 (245)
T 1t8o_A           38 --------GFHFCGGSLINENWVVTAAHCGVT---TSDVVVAGEF-DQGSSSEKIQKLKIAKVFKNSKYNS--LTINNDI  103 (245)
T ss_dssp             --------CCEEEEEEEEETTEEEECGGGCCC---TTSEEEESCS-BTTCSSSCCEEEEEEEEEECTTCCT--TTCCSCC
T ss_pred             --------CCeEEEEEEeeCCEEEEcHHhCcC---CCcEEEEeee-ecCCCCCCcEEEEEEEEEeCCCCCC--CCCCCCE
Confidence                    258899999999999999999865   4578899987 333222 233445999999999988  6778999


Q ss_pred             EEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCA  425 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca  425 (525)
                      |||+|++|+.|+++++|||||....  ..+..++++|||.+.......+..|+++.+++++.++|++.+.. +.+.|||+
T Consensus       104 ALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca  183 (245)
T 1t8o_A          104 TLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICA  183 (245)
T ss_dssp             EEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHHHHGGGCCTTEEEE
T ss_pred             EEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhHhhcCcCCCceEEc
Confidence            9999999999999999999997653  46789999999988765534578899999999999999987653 67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +  ..+.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||+|+.|++||+++|..
T Consensus       184 ~--~~~~~~C~GDSGgPL~~~~~~--~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~  244 (245)
T 1t8o_A          184 G--ASGVSSCMGDSGGPLVCKKNG--AWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAA  244 (245)
T ss_dssp             E--CSSCBCCTTCTTCEEEEEETT--EEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHHHHHT
T ss_pred             c--CCCCccCcccCcCCEEEEECC--EEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcc
Confidence            8  456789999999999997654  899999999999998778899999999999999998854

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=3.6e-48  Score=375.66  Aligned_cols=244  Identities=31%  Similarity=0.597  Sum_probs=197.5

Q ss_pred             eccccC-CCCCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhhe
Q psy3170         181 RTQCDI-LAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLL  259 (525)
Q Consensus       181 ~~~Cg~-~~~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~  259 (525)
                      ...||. ....||+||.+|..++|||+|+|.+....+                                           
T Consensus        11 ~~~CG~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~-------------------------------------------   47 (278)
T 2olg_A           11 PNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSN-------------------------------------------   47 (278)
T ss_dssp             CSSCSCCCCCCCSCCSSBCCTTSSTTEEEEEEECTTC-------------------------------------------
T ss_pred             hhHhCCCCCCCceECCEECCCCCCCceEEEEEecCCC-------------------------------------------
Confidence            347887 346799999999999999999997653211                                           


Q ss_pred             eeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCC----CCCceEEEEEEEeeccccc-----------ccc
Q psy3170         260 FISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP----LGKPRYVRFGLITKLSYSV-----------TDN  324 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~----~~~~~~v~~g~~~~~~~~~-----------~~~  324 (525)
                                       ...++|+||||+++||||||||+...    ......|++|.+ +.....           ...
T Consensus        48 -----------------~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~G~~-~~~~~~~~~~~~~~~~~~~~  109 (278)
T 2olg_A           48 -----------------FEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEW-NTATDPDCYGAVRVCVPDKP  109 (278)
T ss_dssp             -----------------CEEEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEESCS-BTTCSSCEETTTTEECSSCC
T ss_pred             -----------------CcceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEeCcc-cCCCCccccccccccCCCCc
Confidence                             13689999999999999999999652    123578899987 332221           112


Q ss_pred             e-EEEEEEEeCCCCCCCCCCcccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEE
Q psy3170         325 I-HRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKV  401 (525)
Q Consensus       325 ~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~  401 (525)
                      + ..|+++++||+|+.......||||||||++|+.|+++++|||||....  ..+..++++|||.+...  ..+..|+++
T Consensus       110 ~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~~~--~~~~~l~~~  187 (278)
T 2olg_A          110 IDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETG--QYSTIKQKL  187 (278)
T ss_dssp             EEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSSC--CCCSBCEEE
T ss_pred             eEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEEcCCcCCCC--Cccchhhcc
Confidence            3 349999999999873233479999999999999999999999997653  56789999999987653  357789999


Q ss_pred             EEEeeChhhhhcccCC----CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEc
Q psy3170         402 VLDIINNDTCSKQETT----LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRV  477 (525)
Q Consensus       402 ~v~~~~~~~C~~~~~~----~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v  477 (525)
                      .+++++.+.|...+..    +.+.||||+.. .+.+.|.|||||||++...+ ++|+|+||+|||..|+..+.|++||+|
T Consensus       188 ~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~-~~~~~C~GDSGGPL~~~~~~-~~~~l~GIvS~g~~C~~~~~p~vyt~V  265 (278)
T 2olg_A          188 AVPVVHAEQCAKTFGAAGVRVRSSQLCAGGE-KAKDSCGGDSGGPLLAERAN-QQFFLEGLVSFGATCGTEGWPGIYTKV  265 (278)
T ss_dssp             EEEBCCGGGGGGGGSSTTCCCCTTEEEECCT-TCTTCCCCCTTCEEEEEEGG-GEEEEEEEEEECCBCSTTCBCEEEEEG
T ss_pred             cccccCHHHHHHHhccccccCCCceEeeecC-CCCeeCCCccCcceEEEcCC-CcEEEEEEEEECCCCCCCCCCcEEeEH
Confidence            9999999999987653    67889999864 46899999999999997322 389999999999999977889999999


Q ss_pred             CCchhhhccccc
Q psy3170         478 SYYVPWIVHTVW  489 (525)
Q Consensus       478 ~~~~~WI~~~i~  489 (525)
                      +.|++||+++|.
T Consensus       266 ~~y~~WI~~~i~  277 (278)
T 2olg_A          266 GKYRDWIEGNIR  277 (278)
T ss_dssp             GGGHHHHHTTCC
T ss_pred             HHHHHHHHHhhC
Confidence            999999999985

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=2.1e-48  Score=368.49  Aligned_cols=231  Identities=31%  Similarity=0.592  Sum_probs=194.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|......                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTSPT--------------------------------------------------------   24 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECSSS--------------------------------------------------------
T ss_pred             CCCCeECCCCCcCcEEEEEeecCC--------------------------------------------------------
Confidence            689999999999999999754211                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+... ....+.|++|...............|.++++||+|+.  ....|||||
T Consensus        25 ------~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIAL   96 (238)
T 3bg8_A           25 ------QRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKM--AESGYDIAL   96 (238)
T ss_dssp             ------CEEEEEEEEEETTEEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEEECTTCCC--GGGSCCCEE
T ss_pred             ------CcEEEEEEEeeCCEEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEEECCCCCC--CCCCCcEEE
Confidence                  3689999999999999999999764 2356788888772222222334455999999999987  667799999


Q ss_pred             EEECCCcccCCCccceecCCCC--CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAH--NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~  426 (525)
                      |||++|+.|+++++|||||...  ...+..++++|||.+.... ..+..|++..+++++.++|...+..  +.+.|||++
T Consensus        97 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~  175 (238)
T 3bg8_A           97 LKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRD-KIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG  175 (238)
T ss_dssp             EEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSC-CCCSBCEEEECCEECHHHHHHHCTTSCCCTTEEEEC
T ss_pred             EEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCC-ChhhhhcEeeEEEECHHHhhhhhcCCCCCCCeEeec
Confidence            9999999999999999999765  3567899999999876554 4577899999999999999987654  678899998


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ...++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||+++|.
T Consensus       176 ~~~~~~~~C~GDSGgPL~~~~~~--~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  236 (238)
T 3bg8_A          176 YREGGKDACKGDSGGPLSCKHNE--VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (238)
T ss_dssp             CTTCCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHS
T ss_pred             CCCCCCCcCCCCCCcceEEEECC--eEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHh
Confidence            76667899999999999997654  89999999999999877889999999999999999875

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=1.9e-49  Score=393.46  Aligned_cols=235  Identities=24%  Similarity=0.377  Sum_probs=188.1

Q ss_pred             eccccCCC-----CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccc
Q psy3170         181 RTQCDILA-----MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPL  255 (525)
Q Consensus       181 ~~~Cg~~~-----~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~  255 (525)
                      ...||++.     .+||+||.+|..++|||+|+|...                                           
T Consensus        87 ~p~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~-------------------------------------------  123 (347)
T 4f4o_C           87 EAVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISH-------------------------------------------  123 (347)
T ss_dssp             EECCSCCSSCC-----CCSCCBCCSCCCTTCEEEECT-------------------------------------------
T ss_pred             cCCCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeC-------------------------------------------
Confidence            35688754     469999999999999999999642                                           


Q ss_pred             hhheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeC
Q psy3170         256 RTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILH  334 (525)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~h  334 (525)
                                            ..++|+||||+++||||||||+.........+..+.. .........+ ..|+++++|
T Consensus       124 ----------------------~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~V~~i~~H  180 (347)
T 4f4o_C          124 ----------------------HNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAP-TLRLYVGKKQEVEIEKVIFH  180 (347)
T ss_dssp             ----------------------TCCEEECCBCSSSEEEECHHHHTTTSCTTCCHHHHGG-GCEEEETTTEEECEEEEEEC
T ss_pred             ----------------------CCEEEEEEEEcCCEEEeCcccccCCCCCcceEEeeee-eeeecCCCeEEEEEEEEEEC
Confidence                                  2578999999999999999998654333333332222 1111122233 449999999


Q ss_pred             CCCCCCCCCcccceEEEEECCCcccCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhc
Q psy3170         335 PNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK  413 (525)
Q Consensus       335 p~y~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~  413 (525)
                      |+|+.      ||||||||++|+.|+++++|||||..+. ..+..++++|||.+...  ..+..|+++.+++++.++|.+
T Consensus       181 P~y~~------nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~~--~~s~~L~~~~v~iv~~~~C~~  252 (347)
T 4f4o_C          181 PDNST------VDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANL--NFTEHLKYVMLPVADQEKCVQ  252 (347)
T ss_dssp             SCTTT------CCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTTS--SBCSSCEEEEEEEECHHHHHH
T ss_pred             cCCCC------CCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCCC--CCCccceEEEEEEeCHHHHHH
Confidence            99865      7999999999999999999999997654 56788999999987654  367889999999999999987


Q ss_pred             ccCC------------------CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEE
Q psy3170         414 QETT------------------LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYT  475 (525)
Q Consensus       414 ~~~~------------------~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t  475 (525)
                      .+..                  +.+.||||+...+++++|+|||||||++.....++|+|+||+|||.+|+. ..|+|||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~C~~-~~pgVYT  331 (347)
T 4f4o_C          253 YYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRT-AEYGVYV  331 (347)
T ss_dssp             HHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCCTTT-SSCEEEE
T ss_pred             HhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCCCCC-CCCeEEE
Confidence            6431                  56789999987788999999999999997655559999999999999984 5699999


Q ss_pred             EcCCchhhhcccccc
Q psy3170         476 RVSYYVPWIVHTVWP  490 (525)
Q Consensus       476 ~v~~~~~WI~~~i~~  490 (525)
                      ||++|++||+++|.+
T Consensus       332 rVs~y~~WI~~~i~~  346 (347)
T 4f4o_C          332 RVTSILDWIQTTIAD  346 (347)
T ss_dssp             EHHHHHHHHHHHHTC
T ss_pred             EHHHHHHHHHHHHHc
Confidence            999999999999965

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=4.4e-48  Score=375.04  Aligned_cols=248  Identities=32%  Similarity=0.541  Sum_probs=202.2

Q ss_pred             eccccCCC---CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchh
Q psy3170         181 RTQCDILA---MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRT  257 (525)
Q Consensus       181 ~~~Cg~~~---~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~  257 (525)
                      ...||...   ..||+||.+|..++|||+|+|++...++                                         
T Consensus        10 ~~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~-----------------------------------------   48 (276)
T 2vnt_A           10 KFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGG-----------------------------------------   48 (276)
T ss_dssp             CCCTTCCCC-----CCSSEECCGGGSTTEEEEEEECSSS-----------------------------------------
T ss_pred             CCCCCCcCCCCCCcEECCEECCCCCCCcEEEEEEecCCC-----------------------------------------
Confidence            35688654   4699999999999999999998764321                                         


Q ss_pred             heeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeecccccccceE-EEEEEEeCC
Q psy3170         258 LLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIH-RVMQNILHP  335 (525)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~~~~~~-~v~~i~~hp  335 (525)
                                         ...++|+||||+++||||||||+.+.. ...+.|++|.. +........+. .|.++++||
T Consensus        49 -------------------~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~v~~g~~-~~~~~~~~~~~~~v~~i~~Hp  108 (276)
T 2vnt_A           49 -------------------SVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRS-RLNSNTQGEMKFEVENLILHK  108 (276)
T ss_dssp             -------------------CEEEEEEEEEEETTEEEECGGGTTTCCCGGGEEEEESCC-BSSSCCTTCEEEEEEEEEECT
T ss_pred             -------------------cceeEEEEEEeeCCEEEECcccccCCCCCccEEEEeeee-eccCCCCceEEEEEEEEEEcc
Confidence                               246899999999999999999997653 34566777776 44444444444 499999999


Q ss_pred             CCCCCCCCcccceEEEEECCCc----ccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChh
Q psy3170         336 NYTTEGTSQYHDIALLKIAPPV----EFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINND  409 (525)
Q Consensus       336 ~y~~~~~~~~~DIAll~L~~~~----~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~  409 (525)
                      +|+.......+|||||+|+.++    .|+++++|||||....  ..+..+.++|||.+.......+..++.+.+.+++.+
T Consensus       109 ~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~~~~  188 (276)
T 2vnt_A          109 DYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHR  188 (276)
T ss_dssp             TCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHH
T ss_pred             ccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeeccccCCCCcchhheeeeeeEecHH
Confidence            9987545667999999998765    5789999999987654  457899999999887766567788999999999999


Q ss_pred             hhhcccCC---CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcc
Q psy3170         410 TCSKQETT---LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVH  486 (525)
Q Consensus       410 ~C~~~~~~---~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~  486 (525)
                      +|...+..   ....++|++...++.++|.|||||||++..++  +|+|+||+|||.+|+..+.|+|||||++|++||++
T Consensus       189 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~--~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~~  266 (276)
T 2vnt_A          189 ECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRS  266 (276)
T ss_dssp             HHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHH
T ss_pred             HhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEeeCC--eEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            99887643   55678888877778899999999999997765  99999999999999988899999999999999999


Q ss_pred             ccccc
Q psy3170         487 TVWPD  491 (525)
Q Consensus       487 ~i~~~  491 (525)
                      +|+++
T Consensus       267 ~~~~~  271 (276)
T 2vnt_A          267 HTKEE  271 (276)
T ss_dssp             HHSCC
T ss_pred             Hhhhh
Confidence            99764

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=6.3e-48  Score=366.02  Aligned_cols=232  Identities=32%  Similarity=0.621  Sum_probs=195.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+....                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLTA--------------------------------------------------------   24 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSS--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCC--------------------------------------------------------
Confidence            689999999999999999764311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeeccccc-ccceEEEEEEEeCCCCCCCCCCcccceE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHDIA  349 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~~~DIA  349 (525)
                            ..++|+||||+++||||||||+.... ...+.|++|.. ...... ......|+++++||+|+.  ....||||
T Consensus        25 ------~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIA   95 (241)
T 2any_A           25 ------QRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGIL-ELSDITKDTPFSQIKEIIIHQNYKV--SEGNHDIA   95 (241)
T ss_dssp             ------EEEEEEEEEEETTEEEECGGGGSSCCCSTTEEEECSCS-BGGGCCTTSCCBCEEEEEECTTCCT--TSSSSCCE
T ss_pred             ------CceEEEEEEecCCEEEECHHHcCCCCCCccEEEEeeee-eccccccCceEEeeEEEEECCCCCC--CCCCCCeE
Confidence                  36899999999999999999997642 35577888877 333222 233445999999999987  66789999


Q ss_pred             EEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEE
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCA  425 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca  425 (525)
                      ||+|++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.+.|...+..  +.+.|||+
T Consensus        96 Ll~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca  174 (241)
T 2any_A           96 LIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKG-EIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCA  174 (241)
T ss_dssp             EEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTC-CCCSBCEEEEEEEECHHHHHTTSCTTCSCTTEEEE
T ss_pred             EEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCC-CcCchhheeEeEEeCHHHhhhHhccCCCCcCcEee
Confidence            999999999999999999997653  567899999999886554 4567899999999999999987754  67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      +...++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||+|+.|++||+++|...
T Consensus       175 ~~~~~~~~~C~GDsGgPl~~~~~~--~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~~  238 (241)
T 2any_A          175 GYKEGGKDACKGDSGGPLVCKHNG--MWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQSS  238 (241)
T ss_dssp             CCTTCCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSCC
T ss_pred             cCCCCCCccCCCCCCCcEEEEECC--EEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhhcc
Confidence            876667899999999999997654  8999999999999987788999999999999999998653

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=5.4e-48  Score=365.29  Aligned_cols=206  Identities=26%  Similarity=0.570  Sum_probs=174.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC--CCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP--LGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      .++|+||||+++||||||||+...  ....+.+++|.+..........+ ..|.++++||+|+.  ....||||||+|++
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DiALl~L~~  100 (235)
T 4dgj_A           23 RLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNR--RRKDNDIAMMHLEF  100 (235)
T ss_dssp             EEEEEEEECSSSEEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEEECTTCBT--TTTBTCCEEEEESS
T ss_pred             CeEEEEEEeeCCEEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEEECCCCCC--CCCCCeEEEEEECC
Confidence            588999999999999999999653  23457888887632222222333 34999999999988  67789999999999


Q ss_pred             CcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCC
Q psy3170         356 PVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGG  431 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~  431 (525)
                      |+.|+++++|||||....  ..+..++++|||.+...+ ..+..|++..+++++.++|+..+..  +.+.|||++...++
T Consensus       101 ~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~  179 (235)
T 4dgj_A          101 KVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQG-TTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGG  179 (235)
T ss_dssp             CCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTC-CBCSBCEEEEEEEECHHHHHHHCTTSCCCTTEEEECCTTCC
T ss_pred             ccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCC-ccchhheEeEeeecCHHHhhhhccCccCCCCeEeecCCCCC
Confidence            999999999999998654  467899999999876654 5678899999999999999987754  67889999877777


Q ss_pred             cCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         432 KDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       432 ~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||+|+.|++||+++|+
T Consensus       180 ~~~C~GDsGgPl~~~~~~--~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          180 IDSCQGDSGGPLMCQENN--RWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             CBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             CccCCCCCCCeEEEEECC--cEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            899999999999997655  89999999999999988899999999999999999874

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=4.8e-48  Score=366.79  Aligned_cols=208  Identities=32%  Similarity=0.589  Sum_probs=173.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.. .........+ ..|.++++||+|+.  ....||||||+|++|+
T Consensus        24 ~~~CgGtLIs~~~VLTAAhC~~~--~~~~~V~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~~v   98 (241)
T 2jkh_A           24 EGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDR-NTEQEEGGEAVHEVEVVIKHNRFTK--ETYDFDIAVLRLKTPI   98 (241)
T ss_dssp             CEEEEEEECSSSEEEECGGGGGS--CSSCEEEESCS-BTTCCCSCCEEECEEEEEECTTCBT--TTTBTCCEEEEESSCC
T ss_pred             CcEEEEEEeeCCEEEEcHHHcCC--CCcEEEEECCc-cCCCCCCCcEEEEeEEEEeCCCCCC--CCCCCcEEEEEECCcc
Confidence            58899999999999999999976  35688999987 3333233334 44999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCC-----CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCC
Q psy3170         358 EFSETLKPACLNRAH-----NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGG  431 (525)
Q Consensus       358 ~~~~~v~picL~~~~-----~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~  431 (525)
                      .|+++++|||||...     ...+..++++|||.+...+ ..+..|++..+++++.+.|+..+.. +.+.|||++...++
T Consensus        99 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~  177 (241)
T 2jkh_A           99 TFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKG-EQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQ  177 (241)
T ss_dssp             CCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTS-CBCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEESCSSSS
T ss_pred             cCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCC-CcCccccEeeeccccHHHhcccccCcCCCCeEEeeCCCCC
Confidence            999999999999754     2457889999999886554 4577899999999999999877654 67889999876567


Q ss_pred             cCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccC
Q psy3170         432 KDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       432 ~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      .+.|.|||||||++..++  +|+|+||+|||.+|+..+.|++||||+.|++||+++|.....|
T Consensus       178 ~~~C~GDsGgPl~~~~~~--~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~~p  238 (241)
T 2jkh_A          178 EDACQGDSGGPHVTRFKD--TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLP  238 (241)
T ss_dssp             CBCCTTTTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC-----
T ss_pred             CccCcCcCCCeeEEEECC--EEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhccccCC
Confidence            899999999999997655  8999999999999987788999999999999999999765444

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=9e-48  Score=367.01  Aligned_cols=231  Identities=29%  Similarity=0.549  Sum_probs=192.5

Q ss_pred             CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceee
Q psy3170         189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF  268 (525)
Q Consensus       189 ~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (525)
                      ..||+||.+|..++|||+|+|.+....                                                     
T Consensus        11 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~-----------------------------------------------------   37 (251)
T 1pyt_D           11 SARVVGGEDAIPHSWPWQISLQYLRDN-----------------------------------------------------   37 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETT-----------------------------------------------------
T ss_pred             CCccCCCEECCCCCCCceEEEEEEcCC-----------------------------------------------------
Confidence            468999999999999999999764311                                                     


Q ss_pred             eecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccc-ccccc-eEEEEEEEeCCCCCCCCCCccc
Q psy3170         269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSY-SVTDN-IHRVMQNILHPNYTTEGTSQYH  346 (525)
Q Consensus       269 ~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~-~~~~~-~~~v~~i~~hp~y~~~~~~~~~  346 (525)
                              ...++|+||||+++||||||||+.+  ...+.|++|.+ .... ..... ...|+++++||+|+.  ....|
T Consensus        38 --------~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~-~~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~  104 (251)
T 1pyt_D           38 --------TWRHTCGGTLITPNHVLTAAHCISN--TLTYRVALGKN-NLEVEDEAGSLYVGVDTIFVHEKWNS--FLVRN  104 (251)
T ss_dssp             --------EEEEEEEEEEEETTEEEECGGGCCT--TCCEEEEESCS-BTTCSCCSSCEEEEEEEEEECTTCBT--TTTBS
T ss_pred             --------CcceEEEeEEecCCEEEECHHHhCC--CceEEEEEccc-ccccCCCCCcEEEEEEEEEECCCCCC--CCCCC
Confidence                    1368999999999999999999975  46788999987 3322 22222 344999999999988  67789


Q ss_pred             ceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCC
Q psy3170         347 DIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISS  421 (525)
Q Consensus       347 DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~  421 (525)
                      |||||+|++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|++..+++++.+.|...+.   .+.+.
T Consensus       105 DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~  183 (251)
T 1pyt_D          105 DIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNG-PIAAELQQGLQPVVDYATCSQRDWWGTTVKET  183 (251)
T ss_dssp             CCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCS-CCCSBCBCCEEECBCHHHHTSTTTTTTTCCTT
T ss_pred             CEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCC-CcccchheeEeEeeCHHHcchhhccCCCcCCC
Confidence            999999999999999999999997653  457789999999886554 456779999999999999987642   26788


Q ss_pred             cEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         422 QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       422 ~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      |||++. .++.+.|.|||||||++..++  +|+|+||+|||.  .|+..+.|++||||+.|++||+++|+
T Consensus       184 ~~Ca~~-~~~~~~C~GDSGgPL~~~~~~--~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~  250 (251)
T 1pyt_D          184 MVCAGG-DGVISACNGDSGGPLNCQADG--QWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             EEEECC-SCSSCCCCSCTTCEEEEESSS--SEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             eEEecC-CCCCccCCCCCCCceEEEECC--CEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            999986 456789999999999997644  899999999995  79877889999999999999999874

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=4.9e-48  Score=363.35  Aligned_cols=201  Identities=31%  Similarity=0.581  Sum_probs=172.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.. ........ ....|+++++||+|+.  ....||||||||++|+
T Consensus        24 ~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~~v   98 (228)
T 1fxy_A           24 EGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDR-NTEQEEGGEAVHEVEVVIKHNRFTK--ETYDFDIAVLRLKTPI   98 (228)
T ss_dssp             CEEEEEEECSSSEEEECGGGTTS--CSSCEEEEECS-CTTTCCCCEEEEEEEEEEECTTCBT--TTTBTCCEEEEESSCC
T ss_pred             CeeEEEEEeeCCEEEECHHHCCC--CCcEEEEECcc-CccccCCCcEEEEEEEEEECCCCCC--CCCcCcEEEEEECCcc
Confidence            47899999999999999999964  46788999987 33322222 3344999999999988  6788999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .|+++++|||||......+..++++|||.+...+...+..|++..+++++.+.|...+.. +.+.|||++...++.+.|.
T Consensus        99 ~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~  178 (228)
T 1fxy_A           99 TFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQ  178 (228)
T ss_dssp             CCBTTBCCCCCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTCSCBCCT
T ss_pred             cCCCceeccCCCCCCCCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCCCCCCCEEEeccCCCCCcccc
Confidence            999999999999887778899999999988665533578899999999999999987754 6788999987666789999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |||||||++      +.+|+||+|||..|+..+.|++||||++|++||+++|..
T Consensus       179 GDSGgPL~~------~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  226 (228)
T 1fxy_A          179 GDSGGPVVC------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAA  226 (228)
T ss_dssp             TCTTCEEEE------TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             CccccceEE------CCEEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHHhc
Confidence            999999998      237999999999998778899999999999999999864

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=4.3e-48  Score=376.87  Aligned_cols=238  Identities=29%  Similarity=0.447  Sum_probs=190.3

Q ss_pred             CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceee
Q psy3170         189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF  268 (525)
Q Consensus       189 ~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (525)
                      ..||+||.+|..++|||+|+|+... .                                                     
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~-~-----------------------------------------------------   53 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKS-P-----------------------------------------------------   53 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETT-T-----------------------------------------------------
T ss_pred             CCeEECCEECCCCCCCCeEEEEECC-C-----------------------------------------------------
Confidence            4689999999999999999996432 1                                                     


Q ss_pred             eecCCccccceeEeEEEEEeCCEEEecCCCCCC------CCCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCC
Q psy3170         269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS------PLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEG  341 (525)
Q Consensus       269 ~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~------~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~  341 (525)
                               ..++|+||||+++||||||||+..      .....+.|++|.+..........+ ..|.++++||+|+.. 
T Consensus        54 ---------~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~-  123 (289)
T 2bdy_A           54 ---------QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR-  123 (289)
T ss_dssp             ---------TEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECTTCBTT-
T ss_pred             ---------CCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCCCcceeeeeEEEEECCCCCCC-
Confidence                     258999999999999999999953      123567899998732222222233 349999999999842 


Q ss_pred             CCcccceEEEEECCCcccCCCccceecCCCCC-----CCCCcEEEEEeeeccCCCC-----cccccceEEEEEeeChhhh
Q psy3170         342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHN-----VKSPTAIASGFGKLNYFDT-----KESLRLMKVVLDIINNDTC  411 (525)
Q Consensus       342 ~~~~~DIAll~L~~~~~~~~~v~picL~~~~~-----~~~~~~~~~Gwg~~~~~~~-----~~~~~l~~~~v~~~~~~~C  411 (525)
                      ....||||||+|++|+.|+++++|||||....     ..+..++++|||.+.....     ..+..|+++.+++++.+.|
T Consensus       124 ~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~C  203 (289)
T 2bdy_A          124 ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC  203 (289)
T ss_dssp             TTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CCCSBCEEEEEEBCCHHHH
T ss_pred             CCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCccccccccceEEEEEEECHHHh
Confidence            45679999999999999999999999997542     4678899999998765321     1267899999999999999


Q ss_pred             hcccCC-CCCCcEEEEeCC---CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         412 SKQETT-LISSQLCATVMA---GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       412 ~~~~~~-~~~~~~Ca~~~~---~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      ...+.. +.+.||||+...   .+.++|.|||||||++.....++|+|+||+|||..|+..+.|++||||+.|++||+++
T Consensus       204 ~~~~~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~  283 (289)
T 2bdy_A          204 KDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV  283 (289)
T ss_dssp             HHTCSSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHH
T ss_pred             hccccCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            987753 678999998542   2578999999999999863334899999999999999888999999999999999999


Q ss_pred             ccc
Q psy3170         488 VWP  490 (525)
Q Consensus       488 i~~  490 (525)
                      |..
T Consensus       284 i~~  286 (289)
T 2bdy_A          284 IDQ  286 (289)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            864

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=1.2e-47  Score=366.66  Aligned_cols=208  Identities=27%  Similarity=0.537  Sum_probs=176.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC--------------CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP--------------LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQ  344 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~--------------~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~  344 (525)
                      .++|+||||+++||||||||+...              ....+.|++|.+.............|.++++||+|+.  ...
T Consensus        24 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~--~~~  101 (251)
T 3gov_B           24 QPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDP--NTF  101 (251)
T ss_dssp             CEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCSSCEEECEEEEEECTTCBT--TTT
T ss_pred             CeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccCCCCcceEeeeEEEEECCCCCC--CCC
Confidence            578999999999999999999652              3456789999873322222233344999999999988  678


Q ss_pred             ccceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC----CCC
Q psy3170         345 YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT----LIS  420 (525)
Q Consensus       345 ~~DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~----~~~  420 (525)
                      .||||||+|++|+.|+++++|||||......+..++++|||.+...  ..+..|++..+++++.+.|...+..    +.+
T Consensus       102 ~~DIAll~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~  179 (251)
T 3gov_B          102 ENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQ--RFPETLMEIEIPIVDHSTCQKAYAPLKKKVTR  179 (251)
T ss_dssp             BTCCEEEEESSCCCCSSSCCCCBCCSSCCCTTCEEEEEECSCCTTS--CCCSBCEEEEEEEECHHHHHHHTTTTTCCCCT
T ss_pred             CCCEEEEEeCCcccCCCceEEeECCCCCCCCCCEEEEEcCCCCCCC--CCCccceEEeeEEECHHHhhhhhhhccCCCCC
Confidence            8999999999999999999999999888888899999999987653  3677899999999999999987652    678


Q ss_pred             CcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         421 SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       421 ~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .|||++...++.+.|.|||||||++.....++|+|+||+|||.+|+..+.|++||+|+.|++||++++..
T Consensus       180 ~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  249 (251)
T 3gov_B          180 DMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTGV  249 (251)
T ss_dssp             TEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTTTHHHHHHHHCC
T ss_pred             CcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHHhcc
Confidence            8999987767789999999999999754444899999999999999888899999999999999998854

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=2.1e-47  Score=362.11  Aligned_cols=230  Identities=30%  Similarity=0.575  Sum_probs=190.4

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDSSG--------------------------------------------------------   24 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETT--------------------------------------------------------
T ss_pred             CCCCeECCCCCcCcEEEEEEecCC--------------------------------------------------------
Confidence            689999999999999999764311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcc--cce
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQY--HDI  348 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~--~DI  348 (525)
                           ...++|+||||+++||||||||+..  ...+.|++|.+ ....... .....|+++++||+|+.  ....  |||
T Consensus        25 -----~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~~~DI   94 (241)
T 1bru_P           25 -----QWRHTCGGTLVDQSWVLTAAHCISS--SRTYRVVLGRH-SLSTNEPGSLAVKVSKLVVHQDWNS--NQLSNGNDI   94 (241)
T ss_dssp             -----EEEEEEEEEEEETTEEEECGGGCCT--TSCEEEEESCS-BSSSCCTTCEEEEEEEEEECTTCCT--TCGGGCCCC
T ss_pred             -----ceeeEEEeEEeeCCEEEEcHHhccc--CCceEEEEEcc-cccCCCCccEEEEEEEEEECCCCCC--CCCCCCCcE
Confidence                 1358999999999999999999973  36788999987 3333222 33445999999999988  4555  999


Q ss_pred             EEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhccc--C-CCCCCcE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQE--T-TLISSQL  423 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~--~-~~~~~~~  423 (525)
                      |||||++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|++..+++++.++|.+.+  . .+.+.||
T Consensus        95 ALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~  173 (241)
T 1bru_P           95 ALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG-ASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMI  173 (241)
T ss_dssp             EEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTS-CCCSBCEEEEEEEECHHHHTSTTTTGGGCCTTEE
T ss_pred             EEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCC-CCCccceeCEEEEecHHHhCcccccCCcCCCceE
Confidence            9999999999999999999998653  467889999999886544 45778999999999999998753  2 2678899


Q ss_pred             EEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         424 CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       424 Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |++. .++.+.|.|||||||++...+ ++|+|+||+|||.  .|+..+.|++||||+.|++||+++|..
T Consensus       174 Ca~~-~~~~~~C~GDSGgPL~~~~~~-g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  240 (241)
T 1bru_P          174 CAGG-DGIISSCNGDSGGPLNCQGAN-GQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIAN  240 (241)
T ss_dssp             EECC-SSSSBCCTTCTTCEEEEECTT-SCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             eecC-CCCCccCCCCCCCcEEEECCC-CCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHHHHhc
Confidence            9984 456789999999999997633 3899999999996  798778899999999999999998853

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=2e-47  Score=371.77  Aligned_cols=238  Identities=31%  Similarity=0.548  Sum_probs=194.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|.+.....                                                       
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~-------------------------------------------------------   25 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTYHN-------------------------------------------------------   25 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTT-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEeccCC-------------------------------------------------------
Confidence            6899999999999999997643111                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeeccccc------ccceEEEEEEEeCCCCCCCCCCc
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSV------TDNIHRVMQNILHPNYTTEGTSQ  344 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~------~~~~~~v~~i~~hp~y~~~~~~~  344 (525)
                          ....++|+||||+++||||||||+... ....+.|++|.. ......      ......|+++++||+|+.  ...
T Consensus        26 ----~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~~~~~~V~~i~~Hp~y~~--~~~   98 (290)
T 1fiw_A           26 ----NRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAK-EVEWGTNKPVKPPLQERYVEKIIIHEKYSA--SSE   98 (290)
T ss_dssp             ----TEEEEEEEEEEEETTEEEECGGGGSSCCSGGGEEEEESCS-BCCTTCCSCCCTTCEEEEEEEEEECTTCBT--TTT
T ss_pred             ----CccceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEecce-EEeccCCCcCCCCceEEEEEEEEECCCCCC--CCC
Confidence                013689999999999999999999753 234578888876 332211      123344999999999988  678


Q ss_pred             ccceEEEEECCCcccCCCccceecCCCCC---CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhccc--C-CC
Q psy3170         345 YHDIALLKIAPPVEFSETLKPACLNRAHN---VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQE--T-TL  418 (525)
Q Consensus       345 ~~DIAll~L~~~~~~~~~v~picL~~~~~---~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~--~-~~  418 (525)
                      .||||||||++|+.|+++++|||||....   ..+..++++|||.+.......+..|+++.+++++.++|...+  . .+
T Consensus        99 ~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~~i  178 (290)
T 1fiw_A           99 ANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRI  178 (290)
T ss_dssp             BTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTTTTTCC
T ss_pred             CCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEEEEecHHHhccccccCCcC
Confidence            89999999999999999999999997543   347889999999887654345678999999999999998642  2 36


Q ss_pred             CCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         419 ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       419 ~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      .+.||||+...++.+.|.|||||||++.....++|+|+||+|||.+|+..+.|++||||++|++||+++|...
T Consensus       179 ~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  251 (290)
T 1fiw_A          179 RSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIGST  251 (290)
T ss_dssp             CTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGGHHHHHHHHCHH
T ss_pred             CCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHhCcc
Confidence            7889999976667899999999999997643448999999999999987788999999999999999999653

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=1.5e-47  Score=363.68  Aligned_cols=207  Identities=31%  Similarity=0.565  Sum_probs=174.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC------CCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP------LGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~------~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                      .++|+||||+++||||||||+.+.      ....+.|++|.+......... ....|+++++||.|+.  ....||||||
T Consensus        24 ~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DIALl  101 (241)
T 3ncl_A           24 GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFND--FTFDYDIALL  101 (241)
T ss_dssp             EEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEEEEEEECTTCCT--TTCTTCCEEE
T ss_pred             ceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEEEEEEECCCCCC--CCCCCcEEEE
Confidence            588999999999999999999653      235678899987322222222 3445999999999988  6778999999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeC
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVM  428 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~  428 (525)
                      ||++|+.|+++++|||||....  ..+..++++|||.+.... ..+..|++..+.+++.+.|...+.. +.+.|+|++..
T Consensus       102 ~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~  180 (241)
T 3ncl_A          102 ELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGG-TGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFL  180 (241)
T ss_dssp             EESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEECCHHHHHHHSTTTCCTTEEEEECT
T ss_pred             EECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCC-CcCceeeEEeEEEECHHHhhhhcccCCCCCeEEeCCC
Confidence            9999999999999999987654  467899999999887654 5577899999999999999987755 77889999977


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .++.+.|.|||||||++...++ +|+|+||+|||..|+..+.|++||+|+.|++||++++.
T Consensus       181 ~~~~~~C~GDsGgPl~~~~~~g-~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          181 SGGVDSCQGDSGGPLSSVEADG-RIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             TCSSBCCTTCTTCEEEEECTTS-CEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             CCCCccCCCcCCCCEEEEcCCC-cEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            7788999999999999865443 89999999999999988899999999999999998763

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=1.1e-47  Score=363.81  Aligned_cols=231  Identities=31%  Similarity=0.524  Sum_probs=194.4

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|....                                                          
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----------------------------------------------------------   22 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKS----------------------------------------------------------   22 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGG----------------------------------------------------------
T ss_pred             CCCCEECCCCccCCEEEEEeCC----------------------------------------------------------
Confidence            6899999999999999997542                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                           ...++|+||||+++||||||||+.......+.|++|.+ ....... .....|.++++||+|+.  ....|||||
T Consensus        23 -----~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DIAL   94 (238)
T 1ym0_A           23 -----SDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH-DSSAASTVRQTHDVDSIFVNENYDP--ATLENDVSV   94 (238)
T ss_dssp             -----GTEEEEEEEEEETTEEEECHHHHTTCCGGGEEEEESCS-BTTSCCSSCEEEEEEEEEECTTCCT--TTCTTCCEE
T ss_pred             -----CCceEEEEEEeeCCEEEECHHhCCCCCCceEEEEEccc-ccCCCCCCceEEEEEEEEECCCCCC--CCCcccEEE
Confidence                 12689999999999999999999775556788999987 3333322 23445999999999988  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEe
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATV  427 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~  427 (525)
                      |||++|+.|+++++|||||.... ..+..++++|||.+...+...+..|++..+++++.++|...+..  +.+.|||++.
T Consensus        95 l~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~  174 (238)
T 1ym0_A           95 IKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATD  174 (238)
T ss_dssp             EEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHCTTSCCCTTEEEEEC
T ss_pred             EEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhhcccccCCCeEEecC
Confidence            99999999999999999997654 36789999999988765533378899999999999999987753  6789999987


Q ss_pred             CCCC--cCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         428 MAGG--KDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       428 ~~~~--~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ..++  .+.|.|||||||++..++ ++|+|+||+|||..|+ .+.|++||+|+.|.+||+++|..
T Consensus       175 ~~~~~~~~~C~GDsGgPL~~~~~~-~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i~~  237 (238)
T 1ym0_A          175 NTGMTDRDSCQGDSGGPLSVKDGS-GIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTITN  237 (238)
T ss_dssp             SSCSSSCBCCTTTTTCEEEEECTT-CCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHHHC
T ss_pred             CCCCCcCccCCCccCCeeEEECCC-CCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHhcC
Confidence            5444  789999999999997633 3899999999999998 77899999999999999999864

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1.3e-47  Score=366.75  Aligned_cols=210  Identities=30%  Similarity=0.548  Sum_probs=176.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.... ...+.|++|.+ +...... .....|.++++||+|+.  ....||||||+|++|
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DIALl~L~~~   99 (254)
T 2bz6_H           23 AQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEH-DLSEHDGDEQSRRVAQVIIPSTYVP--GTTNHDIALLRLHQP   99 (254)
T ss_dssp             EEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCC-BTTCCCSCCEEEEEEEEEEETTCCT--TSCSSCCEEEEESSC
T ss_pred             CcEEEEEEecCCEEEECHHHcCCCCCcceEEEEECCc-ccCCCCCCcEEEEEEEEEECCCCCC--CCCcCcEEEEEECCc
Confidence            5889999999999999999997643 24588999987 4333222 33445999999999988  677899999999999


Q ss_pred             cccCCCccceecCCCCC-----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC------CCCCCcEEE
Q psy3170         357 VEFSETLKPACLNRAHN-----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET------TLISSQLCA  425 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~-----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~------~~~~~~~Ca  425 (525)
                      +.|+++++|||||....     ..+..++++|||.+...+ ..+..|++..+.+++.++|...+.      .+.+.|||+
T Consensus       100 v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca  178 (254)
T 2bz6_H          100 VVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRG-ATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCA  178 (254)
T ss_dssp             CCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTS-CBCSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEE
T ss_pred             cccCCCccceECCCCccccccccCCCcEEEEeCcccCCCC-CCChhheeeeeeeecHHHHhhhhhccccCCccCCCEEee
Confidence            99999999999987542     356889999999887654 457789999999999999987654      256889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccC
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      +...++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||+++|.....|
T Consensus       179 ~~~~~~~~~C~GDSGgPl~~~~~g--~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~~~  245 (254)
T 2bz6_H          179 GYSDGSKDSCKGDSGGPHATHYRG--TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRP  245 (254)
T ss_dssp             SCSSSSCBCCGGGTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTSCCCS
T ss_pred             cCCCCCCccccccCCCceEEeECC--EEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHHhccCCC
Confidence            876566899999999999997654  8999999999999987788999999999999999999876555

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=1.5e-47  Score=358.58  Aligned_cols=199  Identities=31%  Similarity=0.590  Sum_probs=170.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.. ....... .....|.++++||+|+.  ....||||||||++|+
T Consensus        22 ~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~~~   94 (223)
T 3mfj_A           22 YHFCGGSLINSQWVVSAAHCYK----SGIQVRLGED-NINVVEGNEQFISASKSIVHPSYNS--NTLNNDIMLIKLKSAA   94 (223)
T ss_dssp             SEEEEEEEEETTEEEECGGGCC----SSCEEEESCS-STTSCCSCCEEEEEEEEEECTTCCT--TTCTTCCEEEEESSCC
T ss_pred             CeEEEEEEecCCEEEEhHHhcC----CCcEEEECCc-eecccCCCcEEEEeeEEEECCCCCC--CCCCCCEEEEEeCCCc
Confidence            4889999999999999999993    4578999987 3332222 33444999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .|+++++|||||......+..++++|||.+.......+..|++..+++++.++|+..+.. +.+.|||++...++.+.|.
T Consensus        95 ~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~  174 (223)
T 3mfj_A           95 SLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQ  174 (223)
T ss_dssp             CCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTSSCBCCT
T ss_pred             ccCCcEeeeECCCCCCCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcCcCCCCEEEccCCCCCCCcCC
Confidence            999999999999887778899999999988654434577899999999999999987754 6788999987666789999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |||||||++      +.+|+||+|||..|+..+.|++||||++|++||+++|..
T Consensus       175 GDSGgPL~~------~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 3mfj_A          175 GDSGGPVVC------SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TCTTCEEEE------TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCcccceEE------CCEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            999999998      226999999999998778899999999999999998853

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-47  Score=387.22  Aligned_cols=247  Identities=29%  Similarity=0.499  Sum_probs=202.5

Q ss_pred             cccCCCCCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeee
Q psy3170         183 QCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFIS  262 (525)
Q Consensus       183 ~Cg~~~~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~  262 (525)
                      .||.....||+||.+|..++|||+|+|.+...+                                               
T Consensus       110 ~CG~~~~~rIvgG~~a~~~e~Pw~v~L~~~~~g-----------------------------------------------  142 (408)
T 2xxl_A          110 DCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFG-----------------------------------------------  142 (408)
T ss_dssp             CCSCCCCCCCCSSCBCCTTSSTTEEEEEEECSS-----------------------------------------------
T ss_pred             ccCCCCCCceECCEECCCCCCCcEEEEEeecCC-----------------------------------------------
Confidence            688666789999999999999999999765321                                               


Q ss_pred             ecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-------------cceEEEE
Q psy3170         263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-------------DNIHRVM  329 (525)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-------------~~~~~v~  329 (525)
                                    ...++|+||||+++||||||||+.......+.|++|.+ +.....+             .....|+
T Consensus       143 --------------~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~lG~~-~~~~~~~~~~~~~~~~c~~~~~~~~V~  207 (408)
T 2xxl_A          143 --------------ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEH-RISTEEDCRQQGRKKKCAPPVVNVGIE  207 (408)
T ss_dssp             --------------SEEEEEEEEEEETTEEEECGGGTTTCTTTEEEEEESCS-BTTCSCCEEEETTEEEECCCCEEEEEE
T ss_pred             --------------ceeEEEEEEEEECCEEEEcHHhcCCCCCceEEEEeeee-ECCCccchhhcccccccCCceEEEeEE
Confidence                          13689999999999999999999775556788999987 3332211             1233499


Q ss_pred             EEEeCCCCCCCCCCcccceEEEEECCCcccCCCccceecCCCC-----CCCCCcEEEEEeeeccCCCCcccccceEEEEE
Q psy3170         330 QNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAH-----NVKSPTAIASGFGKLNYFDTKESLRLMKVVLD  404 (525)
Q Consensus       330 ~i~~hp~y~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~-----~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~  404 (525)
                      ++++||+|+.  ....||||||||++|+.|+++++|||||...     ...+..++++|||.+....  .+..|+++.++
T Consensus       208 ~ii~Hp~y~~--~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~t~~~~--~s~~L~~~~v~  283 (408)
T 2xxl_A          208 KHLIHEKYDA--RHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS--SSDVLLQANVP  283 (408)
T ss_dssp             EEEECTTCBT--TTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCCBTTBC--SCSBCEEEEEE
T ss_pred             EEEeCCCCCc--cccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCcCCCCC--CCchheEeeee
Confidence            9999999988  6788999999999999999999999999764     3567889999999886543  57889999999


Q ss_pred             eeChhhhhcccCC-CCCCcEEEEeCCCCcCCCcCCCCCcceeec----CCCceeEEEEEEeec-CCCCCCCCceEEEEcC
Q psy3170         405 IINNDTCSKQETT-LISSQLCATVMAGGKDTCQGDSGGPLQTIM----PDLCMYNIIGITSYG-RQCGHANTPAIYTRVS  478 (525)
Q Consensus       405 ~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~----~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~  478 (525)
                      +++.++|+..+.. +...+|||+.. .++++|.|||||||++..    ...++|+|+||+||| ..|+..+.|++||||+
T Consensus       284 iv~~~~C~~~~~~~~~~~~iCAg~~-~g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs  362 (408)
T 2xxl_A          284 LQPRSACSQAYRRAVPLSQLCVGGG-DLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVG  362 (408)
T ss_dssp             EECHHHHHHHHTSCCCTTEEEECCS-CSSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCCEEEEEGG
T ss_pred             ecCHHHHHHHhcccCCCceEeecCC-CCCccCCCcccChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCCeEEEEHH
Confidence            9999999987754 45689999864 467999999999994321    112389999999999 7999888899999999


Q ss_pred             CchhhhcccccccccCCC
Q psy3170         479 YYVPWIVHTVWPDQFPNS  496 (525)
Q Consensus       479 ~~~~WI~~~i~~~~~~~~  496 (525)
                      .|++||+++|.......+
T Consensus       363 ~y~~WI~~~i~~~~~~~~  380 (408)
T 2xxl_A          363 EYVQWITDTMASNGLLES  380 (408)
T ss_dssp             GGHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHhhcCcccc
Confidence            999999999987655443

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=2.8e-47  Score=364.28  Aligned_cols=236  Identities=29%  Similarity=0.518  Sum_probs=192.3

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|.+.....                                                       
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~-------------------------------------------------------   25 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRRS-------------------------------------------------------   25 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC----------------------------------------------------------
T ss_pred             CCCCeECCCCCcCCEEEEEEecCCC-------------------------------------------------------
Confidence            6899999999999999998653110                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                          ....++|+||||+++||||||||+... ....+.|++|...............|.++++||+|+.  ....|||||
T Consensus        26 ----~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIAL   99 (252)
T 1rtf_B           26 ----PGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDD--DTYDNDIAL   99 (252)
T ss_dssp             -----CEEEEEEEEECSSSEEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEE
T ss_pred             ----CCCCEEEEEEEEeCCEEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEEEEEeCCCCCc--CCCCCCEEE
Confidence                113689999999999999999999763 3456889999773222222233445999999999988  677899999


Q ss_pred             EEECCC----cccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCC
Q psy3170         351 LKIAPP----VEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISS  421 (525)
Q Consensus       351 l~L~~~----~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~  421 (525)
                      |+|++|    +.|+++++|||||....  ..+..++++|||.+.......+..|++..+++++.+.|...+.   .+.+.
T Consensus       100 l~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~  179 (252)
T 1rtf_B          100 LQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDN  179 (252)
T ss_dssp             EEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEECCGGGSSTTTTTTCCCCTT
T ss_pred             EEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEEecHHHhhhhhccCCCCCCC
Confidence            999999    89999999999997653  4568899999998876543456789999999999999987652   26788


Q ss_pred             cEEEEeCCCC------cCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         422 QLCATVMAGG------KDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       422 ~~Ca~~~~~~------~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |||++...++      .+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||+++|.+
T Consensus       180 ~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~--~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  252 (252)
T 1rtf_B          180 MLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDG--RMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP  252 (252)
T ss_dssp             EEEEECCC------CCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             EEEecCCCCCCccCCCCccccCCCcCceEEEeCC--cEEEEEEEEEcCCCCCCCCCeEEEEHHHHHHHHHHhcCC
Confidence            9999865443      789999999999997654  899999999999998778899999999999999998853

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=4e-47  Score=360.27  Aligned_cols=227  Identities=28%  Similarity=0.457  Sum_probs=190.9

Q ss_pred             CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeee
Q psy3170         190 PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFL  269 (525)
Q Consensus       190 ~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (525)
                      .||+||.++..++|||+|+|.+.                                                         
T Consensus         1 ~rIvgG~~a~~~~~Pw~v~l~~~---------------------------------------------------------   23 (240)
T 1mza_A            1 MEIIGGKEVSPHSRPFMASIQYG---------------------------------------------------------   23 (240)
T ss_dssp             CCCCCCEECCTTSSTTEEEEEET---------------------------------------------------------
T ss_pred             CceECCEECCCCCCCeEEEEeeC---------------------------------------------------------
Confidence            37999999999999999999742                                                         


Q ss_pred             ecCCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccc
Q psy3170         270 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHD  347 (525)
Q Consensus       270 ~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~D  347 (525)
                              ..++|+||||+++||||||||+... ....+.|++|.+ ....... .....|.++++||+|+.  ....||
T Consensus        24 --------~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~D   92 (240)
T 1mza_A           24 --------GHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH-SLSKNEASKQTLEIKKFIPFSRVTS--DPQSND   92 (240)
T ss_dssp             --------TEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCS-BSSSCCTTCEEEEEEEEEECCCSSC--SSSSSC
T ss_pred             --------CceEEEEEEecCCEEEECHHhCCCCCCCCCeEEEeCce-ecCCCCCceEEEEEEEEEeCCCccC--CCCCce
Confidence                    1589999999999999999998642 346688999987 3333222 23444999999999987  677899


Q ss_pred             eEEEEECCCcccCCCccceecCC-CCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhh--cccC---CCCCC
Q psy3170         348 IALLKIAPPVEFSETLKPACLNR-AHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCS--KQET---TLISS  421 (525)
Q Consensus       348 IAll~L~~~~~~~~~v~picL~~-~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~--~~~~---~~~~~  421 (525)
                      ||||+|++|+.|+++++|||||. .....+..++++|||.+.......+..|+++.+++++.+.|.  ..+.   .+.+.
T Consensus        93 IALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~  172 (240)
T 1mza_A           93 IMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKD  172 (240)
T ss_dssp             CEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTTTTTTTTCCCTT
T ss_pred             EEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCcceeCCCCcCCCC
Confidence            99999999999999999999998 444678899999999887655335788999999999999998  4443   26788


Q ss_pred             cEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCC-chhhhcccccc
Q psy3170         422 QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSY-YVPWIVHTVWP  490 (525)
Q Consensus       422 ~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~-~~~WI~~~i~~  490 (525)
                      |||++...++.+.|.|||||||++.      .+|+||+|||..|+..+.|++||+|+. |++||+++|..
T Consensus       173 ~~Ca~~~~~~~~~C~GDSGGPL~~~------~~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~~~~  236 (240)
T 1mza_A          173 MVCAGDAKGQKDSCKGDAGGPLICK------GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVP  236 (240)
T ss_dssp             EEEEECTTSCCCCCTTCTTCEEEET------TEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTCC
T ss_pred             eEeecCCCCCCccCCCCCCCeeEEC------CEEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHhccC
Confidence            9999876667899999999999982      279999999999997789999999999 99999999965

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=4.6e-47  Score=357.91  Aligned_cols=203  Identities=29%  Similarity=0.557  Sum_probs=170.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+... ....+.|++|.. .   ........|+++++||+|+.  ....||||||||++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~~v~~G~~-~---~~~~~~~~v~~i~~hp~y~~--~~~~~DIALl~L~~~~   96 (232)
T 2oq5_A           23 SHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVT-I---KPSKMKRGLRRIIVHEKYKH--PSHDYDISLAELSSPV   96 (232)
T ss_dssp             EEEEEEEEEETTEEEECGGGGSSCCCGGGEEEEESSB-S---TTCSEEEEEEEEEECTTCCT--TCCTTCCEEEEESSCC
T ss_pred             CeeEEEEEEcCCEEEECHHHcCCCCCCceEEEEEeeE-E---CCCceEEeEEEEEeCCCCCC--CCCCCCEEEEEecCCC
Confidence            589999999999999999999764 234578888865 2   12233445999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCCcEEEEeCCCCc
Q psy3170         358 EFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGK  432 (525)
Q Consensus       358 ~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~~~Ca~~~~~~~  432 (525)
                      .|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.+.|...+.   .+.+.|||++...++.
T Consensus        97 ~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~  175 (232)
T 2oq5_A           97 PYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDG-YSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKT  175 (232)
T ss_dssp             CCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTC-CCCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEEECTTCSS
T ss_pred             ccCCceeEeECCCccccCCCCCEEEEEECCccCCCC-CCCceeeEeEEEEeCHHHcCCccccCCccCCCEEeecCCCCCC
Confidence            9999999999997653  457899999999876544 456789999999999999987532   2678899999766678


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      +.|.|||||||++...+ ++|+|+||+|||..|+..+.|++||||+.|++||++++.
T Consensus       176 ~~C~GDsGgPL~~~~~~-~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          176 DACQGDSGGPLVSSDAR-DIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             BCCTTCTTCEEEEECTT-SCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             ccCCCCCCCcEEEECCC-CCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            99999999999986533 389999999999999877889999999999999998763

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=5e-47  Score=368.34  Aligned_cols=241  Identities=28%  Similarity=0.502  Sum_probs=195.4

Q ss_pred             ccccCCCC------CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccc
Q psy3170         182 TQCDILAM------PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPL  255 (525)
Q Consensus       182 ~~Cg~~~~------~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~  255 (525)
                      ..||....      +||+||.++..++|||+|+|...                                           
T Consensus        20 ~~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-------------------------------------------   56 (283)
T 1yc0_A           20 QACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG-------------------------------------------   56 (283)
T ss_dssp             -CCSCCSCC-------CBSCEECCTTSSTTEEEEEET-------------------------------------------
T ss_pred             CCcCCcccccccCcCceECCeECCCCCCCeEEEEEcC-------------------------------------------
Confidence            45876542      48999999999999999999642                                           


Q ss_pred             hhheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeecccccccceE-EEEEEEe
Q psy3170         256 RTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIH-RVMQNIL  333 (525)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~~~~~~-~v~~i~~  333 (525)
                                             .++|+||||+++||||||||+.... ...+.|++|.+ .........+. .|.++++
T Consensus        57 -----------------------~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~-~~~~~~~~~~~~~v~~i~~  112 (283)
T 1yc0_A           57 -----------------------DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH-FFNRTTDVTQTFGIEKYIP  112 (283)
T ss_dssp             -----------------------TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCC-BTTCCCSSCEEECEEEEEE
T ss_pred             -----------------------CcEEEEEEeeCCEEEECHHHcCCCCCCceEEEEEeee-ecccCCCceEEEeeEEEEe
Confidence                                   3789999999999999999997642 35688999987 43333333344 4999999


Q ss_pred             CCCCCCCCCCcccceEEEEECCC----cccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeC
Q psy3170         334 HPNYTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIIN  407 (525)
Q Consensus       334 hp~y~~~~~~~~~DIAll~L~~~----~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~  407 (525)
                      ||.|+.. ....||||||+|++|    +.|+++++|||||....  ..+..++++|||.+.......+..|+++.+++++
T Consensus       113 hp~y~~~-~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~  191 (283)
T 1yc0_A          113 YTLYSVF-NPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVA  191 (283)
T ss_dssp             CTTCCTT-STTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEBCC
T ss_pred             cCccccC-CCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEEEEEC
Confidence            9999752 346699999999999    88999999999997543  4678999999998876543457889999999999


Q ss_pred             hhhhhccc--C-CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhh
Q psy3170         408 NDTCSKQE--T-TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI  484 (525)
Q Consensus       408 ~~~C~~~~--~-~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI  484 (525)
                      .++|...+  . .+.+.|||++...++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||
T Consensus       192 ~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g--~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI  269 (283)
T 1yc0_A          192 DHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNG--VAYLYGIISWGDGCGRLHKPGVYTRVANYVDWI  269 (283)
T ss_dssp             HHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHH
T ss_pred             HHHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECC--cEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHH
Confidence            99998642  2 267899999876667899999999999997654  899999999999998778899999999999999


Q ss_pred             cccccccc
Q psy3170         485 VHTVWPDQ  492 (525)
Q Consensus       485 ~~~i~~~~  492 (525)
                      +++|....
T Consensus       270 ~~~i~~~~  277 (283)
T 1yc0_A          270 NDRIRPPR  277 (283)
T ss_dssp             HHHCC---
T ss_pred             HHHhcCCC
Confidence            99997643

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=1.4e-47  Score=386.31  Aligned_cols=256  Identities=29%  Similarity=0.500  Sum_probs=203.3

Q ss_pred             eccccCCC----CCeeecC-ccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccc
Q psy3170         181 RTQCDILA----MPMIIGG-SRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPL  255 (525)
Q Consensus       181 ~~~Cg~~~----~~~i~~g-~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~  255 (525)
                      ...||...    ..||+|| .+|..++|||+|+|.+.....                                       
T Consensus       115 ~~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~---------------------------------------  155 (394)
T 2b9l_A          115 PSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIP---------------------------------------  155 (394)
T ss_dssp             CCCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC------------------------------------------
T ss_pred             CCCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeeccccc---------------------------------------
Confidence            45698654    3499999 899999999999997643110                                       


Q ss_pred             hhheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCC--CceEEEEEEEeecccccc---cceEEEEE
Q psy3170         256 RTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVT---DNIHRVMQ  330 (525)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~v~~g~~~~~~~~~~---~~~~~v~~  330 (525)
                                        ......++|+||||+++||||||||+.....  ..+.|++|.+ +......   .....|++
T Consensus       156 ------------------~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~-~~~~~~~~~~~~~~~V~~  216 (394)
T 2b9l_A          156 ------------------GSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEW-DTLTEKERLPYQERKIRQ  216 (394)
T ss_dssp             ---------------------CCSEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEESCC-BTTCCCSSSCCEEEEEEE
T ss_pred             ------------------cccccceEeeEEEEeCCEEEeccceecCCCCCcccEEEEecee-eccCCcCCCccEEEEEEE
Confidence                              0001368999999999999999999976433  5688999987 3322221   23344999


Q ss_pred             EEeCCCCCCCCCCcccceEEEEECCCcccCCCccceecCCCCC-CCCCcEEEEEeeeccCCC-CcccccceEEEEEeeCh
Q psy3170         331 NILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN-VKSPTAIASGFGKLNYFD-TKESLRLMKVVLDIINN  408 (525)
Q Consensus       331 i~~hp~y~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~-~~~~~~l~~~~v~~~~~  408 (525)
                      +++||+|+.  ....||||||+|++|+.|+++++|||||.... ..+..++++|||.+.... ...+..|+++.+++++.
T Consensus       217 ii~Hp~y~~--~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~t~~~~~~~~s~~L~~~~v~iv~~  294 (394)
T 2b9l_A          217 VIIHSNFNP--KTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDR  294 (394)
T ss_dssp             EEECTTCCT--TTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCTTTTTCTTSSCCBCEEEEECEECH
T ss_pred             EEECCCCCC--CccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEEEeccCccCCCCCcccccceEEEEEEECH
Confidence            999999988  67789999999999999999999999997654 456889999999876533 13467899999999999


Q ss_pred             hhhhcccC--------CCCCCcEEEEeCCCCcCCCcCCCCCcceeecC-CCceeEEEEEEeecCCCCCCCCceEEEEcCC
Q psy3170         409 DTCSKQET--------TLISSQLCATVMAGGKDTCQGDSGGPLQTIMP-DLCMYNIIGITSYGRQCGHANTPAIYTRVSY  479 (525)
Q Consensus       409 ~~C~~~~~--------~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~-~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~  479 (525)
                      ++|+..+.        .+.+.||||+.. .++++|.|||||||++... ..++|+|+||+|||.+|+..+.|+|||||+.
T Consensus       295 ~~C~~~~~~~~~~~~~~i~~~~iCAg~~-~g~d~C~GDSGGPLv~~~~~~~~~~~lvGIvS~G~~C~~~~~PgVYT~V~~  373 (394)
T 2b9l_A          295 DKCQADLRNTRLGLKFVLDQTFVCAGGE-QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAH  373 (394)
T ss_dssp             HHHHHHHHTTTTCTTCCCCTTEEEECCB-SSCSCCSSCTTCEEEEEETTEEEEEEEEEEESCTTCCCBSSSCEEEEEGGG
T ss_pred             HHHHHHHhhcccccceecCCCEEEeeCC-CCCcCCCCCcchhhEEEEcCCCCeEEEEEEEEECCCCCCCCCCeEEEEHHH
Confidence            99987542        256789999863 4679999999999999642 2348999999999999997789999999999


Q ss_pred             chhhhcccccccccCCCc
Q psy3170         480 YVPWIVHTVWPDQFPNSS  497 (525)
Q Consensus       480 ~~~WI~~~i~~~~~~~~~  497 (525)
                      |++||+++|....+....
T Consensus       374 y~~WI~~~i~~~~~~~~~  391 (394)
T 2b9l_A          374 FRNWIDQEMQAKGLSTTP  391 (394)
T ss_dssp             GHHHHHHHHHHTTCCSGG
T ss_pred             hHHHHHHHHHhcCCCCCc
Confidence            999999999876655443

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=1.5e-47  Score=362.09  Aligned_cols=206  Identities=30%  Similarity=0.571  Sum_probs=172.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.+ +....... ....|.++++||+|+.......||||||+|++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAhC~~~--~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~   99 (235)
T 2wph_S           23 DAFCGGSIVNEKWIVTAAHCVET--GVKITVVAGEH-NIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPL   99 (235)
T ss_dssp             TTCEEEEEEETTEEEECGGGCCT--TSCCEEEESCC-BTTSCCSCCEEEEEEEEEECTTTTSSSSCCTTCCEEEEESSCC
T ss_pred             CeeEEEEEEeCCEEEECHHHCcC--CCCEEEEEccc-ccCCCCCCcEEeeeEEEEeCCCCcccCCcCCCCEEEEEECCcC
Confidence            46899999999999999999975  34688999987 33333222 3344999999999986334567999999999999


Q ss_pred             ccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCc
Q psy3170         358 EFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGK  432 (525)
Q Consensus       358 ~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~  432 (525)
                      .|+++++|||||....    ..+..++++|||.+...+ ..+..|++..+++++.+.|...+.. +.+.|||++...++.
T Consensus       100 ~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~  178 (235)
T 2wph_S          100 VLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKG-RSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGR  178 (235)
T ss_dssp             CCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTS-CBCSBCEEEEEEEECHHHHHHTCSSCCCTTEEEESCTTCSC
T ss_pred             cCCCCccccCCCCCcccccccCCccEEEEeCCCccCCC-CccchheEeeeeeeCHHHhcCcccCCCCCCEEEeCCCCCCC
Confidence            9999999999987543    246789999999886654 4677899999999999999887654 678999998766678


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||++++..
T Consensus       179 ~~C~GDsGgPl~~~~~~--~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          179 DSCQGDSGGPHVTEVEG--TSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             BCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             ccCCCCCCCceEEeECC--eEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            99999999999997655  899999999999998778899999999999999998853

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=3.4e-47  Score=360.24  Aligned_cols=208  Identities=26%  Similarity=0.479  Sum_probs=170.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCC-cccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTS-QYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~-~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.... ..+.|++|.. ....  ......|.++++||+|+.  .. ..||||||||++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~~~~-~~~~v~~G~~-~~~~--~~~~~~v~~i~~Hp~y~~--~~~~~~DIALl~L~~~v   96 (240)
T 2zgc_A           23 SHLCGGVLVHPKWVLTAAHCLAQRM-AQLRLVLGLH-TLDS--PGLTFHIKAAIQHPRYKP--VPALENDLALLQLDGKV   96 (240)
T ss_dssp             EEEEEEEEEETTEEEECGGGGCSCG-GGEEEEESCS-BSSS--CCEEEEEEEEEECTTCBC--TTSCBSCCEEEEESSCC
T ss_pred             CeEEEEEEEcCCEEEEcHHhcCCCC-CCEEEEeccc-ccCC--CCeEEEEEEEEECCCCCC--CCCCcccEEEEEeCCcc
Confidence            5899999999999999999997632 2688899876 3222  223445999999999987  44 78999999999999


Q ss_pred             ccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhc--ccC-CCCCCcEEEEeCCCCc
Q psy3170         358 EFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK--QET-TLISSQLCATVMAGGK  432 (525)
Q Consensus       358 ~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~--~~~-~~~~~~~Ca~~~~~~~  432 (525)
                      .|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.++|..  .+. .+.+.|||++...++.
T Consensus        97 ~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~  175 (240)
T 2zgc_A           97 KPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGG-RLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQ  175 (240)
T ss_dssp             CCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTC-CBCSBCEEEEEEECCHHHHTSTTTTTTCCCTTEEEEECSSTTC
T ss_pred             cCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCC-CcCceeeeeeeeecCHHHhCCccccCCCCCCceEeeccCCCCC
Confidence            9999999999997654  567899999999886544 567889999999999999987  443 3678899998766678


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccccccCCCc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS  497 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~~~~  497 (525)
                      +.|.|||||||++.  +  .|+|+||+||| ..|+..+.|++||+|+.|++||++++......++.
T Consensus       176 ~~C~GDSGgPL~~~--~--~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~~~~~~~~  237 (240)
T 2zgc_A          176 APCKGDSGGPLVCG--K--GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRSALEHHH  237 (240)
T ss_dssp             BCCTTCTTCEEEET--T--TTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCCC------
T ss_pred             ccCCCCccCeeEEC--C--CCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhhcchhhcc
Confidence            99999999999983  2  47999999999 78987788999999999999999999876555443

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=5.2e-47  Score=359.35  Aligned_cols=203  Identities=31%  Similarity=0.536  Sum_probs=170.6

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCc--ccceEEEEECC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQ--YHDIALLKIAP  355 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~--~~DIAll~L~~  355 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.+ +....... ....|+++++||+|+.  ...  .||||||+|++
T Consensus        27 ~~~CgGsLI~~~~VLTAAHC~~~--~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~~~DIALl~L~~  101 (240)
T 1gvk_B           27 AHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVGEH-NLNQNNGTEQYVGVQKIVVHPYWNT--DDVAAGYDIALLRLAQ  101 (240)
T ss_dssp             EEEEEEEEEETTEEEECGGGGCS--CCCEEEEESCS-BTTSCCSCCEEEEEEEEEECTTCCT--TCGGGCCCCEEEEESS
T ss_pred             CceEEEEEeeCCEEEECHHHCCC--CcceEEEECCe-ecccCCCcceEEEEEEEEECCCCCC--CCCCCCCcEEEEEECC
Confidence            58999999999999999999976  36788999987 43333222 3445999999999988  444  78999999999


Q ss_pred             CcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhccc--C-CCCCCcEEEEeCCC
Q psy3170         356 PVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQE--T-TLISSQLCATVMAG  430 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~--~-~~~~~~~Ca~~~~~  430 (525)
                      |+.|+++++|+|||....  ..+..++++|||.+...+ ..+..|+++.+++++.+.|...+  . .+.+.|||++. .+
T Consensus       102 ~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~-~~  179 (240)
T 1gvk_B          102 SVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNG-QLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DG  179 (240)
T ss_dssp             CCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTC-CBCSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECC-SS
T ss_pred             ccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCC-CcchhccEEEEEEEcHHHhccccccCccCCcceEeecC-CC
Confidence            999999999999997653  467899999999886554 45778999999999999998752  2 26788999984 45


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +.+.|.|||||||++..++  +|+|+||+|||.  +|+..+.|++||||+.|++||+++|..
T Consensus       180 ~~~~C~GDSGgPL~~~~~g--~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  239 (240)
T 1gvk_B          180 VRSGCQGDSGGPLHCLVNG--QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIAS  239 (240)
T ss_dssp             SCBCCTTCTTCEEEEEETT--EEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             CCcccCCCCcCceEEEECC--cEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            6899999999999997654  899999999994  798778899999999999999998853

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=3.2e-47  Score=356.14  Aligned_cols=197  Identities=29%  Similarity=0.585  Sum_probs=169.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.+ ....... .....|+++++||+|+.  ....||||||||++|+
T Consensus        22 ~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~~~   94 (222)
T 1hj8_A           22 YHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEH-NIKVTEGSEQFISSSRVIRHPNYSS--YNIDNDIMLIKLSKPA   94 (222)
T ss_dssp             SEEEEEEEEETTEEEECGGGCC----SSCEEEESCS-BTTSCCSCCEEEEEEEEEECTTCBT--TTTBSCCEEEEESSCC
T ss_pred             CcEEEeEEecCCEEEECHHhcC----CCeEEEEccc-ccccCCCCcEEEEEEEEEECCCCCC--CCCCCcEEEEEECCcc
Confidence            4789999999999999999985    4578999987 3332222 33444999999999987  6778999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .|+++++|||||......+..++++|||.+.... ..+..|++..+++++.++|+..+.. +.+.|||++...++.+.|.
T Consensus        95 ~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~  173 (222)
T 1hj8_A           95 TLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSST-ADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ  173 (222)
T ss_dssp             CCSSSCCCCBCCSSCCCTTCEEEEEESSCCCCSS-CCTTBCEEEEEEBCCHHHHHHHSTTCCCTTEEEESCTTSSCBCCT
T ss_pred             cCCCceeccCCCCCCCCCCCEEEEEECCCCCCCC-CCCceeEEEEEEEcCHHHhhhhccCCCCCCeEEeccCCCCCccCC
Confidence            9999999999998777788999999999886544 4677899999999999999987754 6788999987666789999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      |||||||++.      .+|+||+|||..|+..+.|++||||+.|++||+++|.
T Consensus       174 GDSGgPL~~~------~~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~~  220 (222)
T 1hj8_A          174 GDSGGPVVCN------GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA  220 (222)
T ss_dssp             TCTTCEEEET------TEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCcccceEEC------CEEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHhh
Confidence            9999999982      2699999999999877889999999999999999885

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=2.9e-47  Score=366.18  Aligned_cols=209  Identities=33%  Similarity=0.597  Sum_probs=175.6

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+... ....+.|++|.. ......... ...|.++++||+|+.  ....||||||||++|
T Consensus        23 ~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~v~~g~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DIALl~L~~~   99 (261)
T 3gyl_B           23 VHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAH-QLDSYSEDAKVSTLKDIIPHPSYLQ--EGSQGDIALLQLSRP   99 (261)
T ss_dssp             EEEEEEEECSSSEEEECGGGSCTTSCGGGEEEEESCS-BTTSCCSSCEEECEEEEEECTTCCS--TTCSCCCEEEEESSC
T ss_pred             ceEEEEEEEcCCEEEECHHHCCCCCCcccEEEEeCce-eccCCCCCceEEEEEEEEECCCcCC--CCCCCcEEEEEECCC
Confidence            588999999999999999999643 345678999987 333333333 344999999999988  677899999999999


Q ss_pred             cccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCC-cccccceEEEEEeeChhhhhcccC---------CCCCCcEE
Q psy3170         357 VEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDT-KESLRLMKVVLDIINNDTCSKQET---------TLISSQLC  424 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~-~~~~~l~~~~v~~~~~~~C~~~~~---------~~~~~~~C  424 (525)
                      +.|+++++|||||....  ..+..++++|||.+..... ..+..|++..+.+++.+.|...+.         .+.+.|||
T Consensus       100 v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~C  179 (261)
T 3gyl_B          100 ITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVC  179 (261)
T ss_dssp             CCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEE
T ss_pred             ccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhhhcccccccccccccCCeEe
Confidence            99999999999987654  3678999999998765442 236789999999999999987654         26688999


Q ss_pred             EEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         425 ATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       425 a~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      ++...++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||+|+.|++||+++|....
T Consensus       180 a~~~~~~~~~C~GDsGgPl~~~~~~--~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~~~  245 (261)
T 3gyl_B          180 AGYVEGGKDACQGDSGGPLSCPVEG--LWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTELQ  245 (261)
T ss_dssp             ESCSSSSCBCCTTTTTCEEEEEETT--EEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHHHHHHS
T ss_pred             eCCCCCCCccCCCCCCCeeEEEeCC--EEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHHHhhcc
Confidence            9876677899999999999997655  89999999999999977889999999999999999997543

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.8e-47  Score=358.76  Aligned_cols=201  Identities=33%  Similarity=0.571  Sum_probs=170.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceE-EEEEEEeCCCCCCC---------CCCcccce
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIH-RVMQNILHPNYTTE---------GTSQYHDI  348 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~-~v~~i~~hp~y~~~---------~~~~~~DI  348 (525)
                      .++|+||||+++||||||||+.+    .+.|++|.+ .........+. .|.++++||+|+..         .....|||
T Consensus        23 ~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DI   97 (238)
T 1spj_A           23 TFQCGGILVHRQWVLTAAHCISD----NYQLWLGRH-NLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDL   97 (238)
T ss_dssp             EEEEEEEEEETTEEEECGGGCCS----SEEEEESCS-BTTSCCTTCEEECEEEEEECTTSCGGGGCC--CTTTCCCTTCC
T ss_pred             CeeEEEEEecCCEEEEcHHhCCC----CceEEEEec-cccCCCCCceEEEEEEEEcCCCccccccccccccccccCCCCe
Confidence            58899999999999999999963    578899987 33333333344 49999999999831         14667999


Q ss_pred             EEEEECCCcc-cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEE
Q psy3170         349 ALLKIAPPVE-FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCAT  426 (525)
Q Consensus       349 All~L~~~~~-~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~  426 (525)
                      |||+|++|+. |++.++|+|||......+..++++|||.+...+...+..|+++.+++++.++|...+.. +.+.|||++
T Consensus        98 ALl~L~~~~~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~  177 (238)
T 1spj_A           98 MLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVG  177 (238)
T ss_dssp             EEEEESSCCCCSSTTCCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEE
T ss_pred             EEEEECccccccCCceeeccCCCCCCCCCCEEEEEecCCCCCCCCCCcCcccEEEEeecCHHHhhhhccCCCCCCeEEee
Confidence            9999999999 99999999999877777899999999988765545678899999999999999987654 678899999


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ...++.+.|.|||||||++      +++|+||+||| ..|+..+.|++||||+.|++||+++|..
T Consensus       178 ~~~~~~~~C~GDSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~  236 (238)
T 1spj_A          178 HLEGGKDTCVGDSGGPLMC------DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAE  236 (238)
T ss_dssp             CTTCSSBCCTTCTTCEEEE------TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCcEEE------cCEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhhc
Confidence            7666789999999999998      34899999999 7898778999999999999999999864

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=4.3e-47  Score=359.36  Aligned_cols=199  Identities=33%  Similarity=0.590  Sum_probs=168.5

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceE-EEEEEEeCCCCCCCCCCc-----------cc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIH-RVMQNILHPNYTTEGTSQ-----------YH  346 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~-~v~~i~~hp~y~~~~~~~-----------~~  346 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.. .........+. .|.++++||+|+.  ...           .|
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~~~~Hp~y~~--~~~~~~~~~~~~~~~~   95 (237)
T 1ao5_A           23 EHICGGVLLDRNWVLTAAHCYV----DQYEVWLGKN-KLFQEEPSAQHRLVSKSFPHPGFNM--SLLMLQTIPPGADFSD   95 (237)
T ss_dssp             EEEEEEEEEETTEEEECTTCCC----SSCEEEESCC-BSSSCCSSCEECCEEEEEECTTSCG--GGGGCSSCCTTCCCTT
T ss_pred             CeEEEEEEeeCCEEEECHHHCC----CCCEEEeccc-ccccCCCCcEEEEEEEEEcCCCcCc--ccccccccccccCCCC
Confidence            5899999999999999999994    4578999987 33322223333 4999999999986  333           79


Q ss_pred             ceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEE
Q psy3170         347 DIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCA  425 (525)
Q Consensus       347 DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca  425 (525)
                      |||||+|++|+.|+++++|||||......+..++++|||.+.......+..|++..+++++.++|.+.+.. +.+.|||+
T Consensus        96 DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca  175 (237)
T 1ao5_A           96 DLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCA  175 (237)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEE
T ss_pred             CEEEEEeCCccccCCceeCCCcCCCCCCCCCEEEEEECCccCCCCCCCCCcccEEEEEecChhHhhhhhcccCCCCEEEE
Confidence            99999999999999999999999887778899999999988765335678899999999999999987754 67899999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +...++.+.|.|||||||++      +.+|+||+||| ..|+.++.|++||||+.|++||+++|..
T Consensus       176 ~~~~~~~~~C~GDSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  235 (237)
T 1ao5_A          176 GEMGGGKDTCRDDSGGPLIC------DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMK  235 (237)
T ss_dssp             ECTTCSCBCCTTCTTCEEEE------TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHH
T ss_pred             ccCCCCCCCCCCCCcceEEE------CCEEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHhh
Confidence            85456789999999999998      12799999999 7899778999999999999999999864

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=7.5e-47  Score=360.31  Aligned_cols=235  Identities=33%  Similarity=0.538  Sum_probs=194.8

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|+....++                                                       
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~-------------------------------------------------------   25 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHRGG-------------------------------------------------------   25 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECTTS-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCC-------------------------------------------------------
Confidence            6899999999999999998654221                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIA  349 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIA  349 (525)
                           ...++|+||||+++||||||||+.+. ....+.|++|.. ......... ...|.++++||+|+.......||||
T Consensus        26 -----~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~g~~-~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIA   99 (247)
T 3mhw_U           26 -----SVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRS-RLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIA   99 (247)
T ss_dssp             -----CEEEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCC-BSSSCCTTCEEEEEEEEEECTTCEEC-CCEESCCE
T ss_pred             -----ccceEEEEEEEeCCEEEEcHHhCcCCCCCccEEEEeccc-cccCCCCCCEEEEEEEEEECCCCCCCcCCCCCcEE
Confidence                 12689999999999999999999764 334678999987 333333333 3449999999999873333679999


Q ss_pred             EEEECCC----cccCCCccceecCCCC--CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCC
Q psy3170         350 LLKIAPP----VEFSETLKPACLNRAH--NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLIS  420 (525)
Q Consensus       350 ll~L~~~----~~~~~~v~picL~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~  420 (525)
                      ||+|++|    +.+++.++|+|||...  ...+..++++|||.+.......+..|+...+++++.++|...+.   .+.+
T Consensus       100 Ll~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  179 (247)
T 3mhw_U          100 LLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTT  179 (247)
T ss_dssp             EEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTTTGGGCCT
T ss_pred             EEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEEEEChHHhcCccccCCcCCC
Confidence            9999999    7889999999999753  35678999999998876554467889999999999999987532   2678


Q ss_pred             CcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         421 SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       421 ~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .|||++...++.+.|.|||||||++..++  +|+|+||+|||.+|+..+.|++||+|+.|++||++++.
T Consensus       180 ~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~--~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~  246 (247)
T 3mhw_U          180 KMLCAADPQWKTDSCQGDSGGPLVCSLQG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK  246 (247)
T ss_dssp             TEEEEECTTSCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSBTTBCEEEEEGGGCHHHHHHHTT
T ss_pred             CeEecCCCCCCCccCCCCCCCeEEEEECC--CEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            99999987667899999999999997765  89999999999999988899999999999999999885

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=7.1e-47  Score=354.05  Aligned_cols=197  Identities=32%  Similarity=0.594  Sum_probs=168.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.+ ....... .....|.++++||+|+.  ....||||||+|++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIAll~L~~~~   95 (223)
T 1lo6_A           23 HLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKH-NLRQRESSQEQSSVVRAVIHPDYDA--ASHDQDIMLLRLARPA   95 (223)
T ss_dssp             EEEEEEEEEETTEEEECGGGCC----TTCEEEESCS-BTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEEEEESSCC
T ss_pred             CEEEEeEEecCCEEEECccCCC----CCeEEEEcce-ecCCCCCCcEEEEEEEEEECCCCCC--CCCcCeEEEEEECCcc
Confidence            5899999999999999999985    4578999987 3333222 33445999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .|+++++|||||......+..++++|||.+. .+ ..+..|++..+++++.++|+..+.. +.+.|||++....+.+.|.
T Consensus        96 ~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~-~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~  173 (223)
T 1lo6_A           96 KLSELIQPLPLERDCSANTTSCHILGWGKTA-DG-DFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQ  173 (223)
T ss_dssp             CCBTTBCCCCBCCCTTCCCCEEEEEESSCCT-TS-SCCSBCEEEEEEEECHHHHHHHSTTTCCTTEEEEECTTTCCBCCT
T ss_pred             cCCCceeecccCCCCCCCCCEEEEEEECCCC-CC-CcCceeeEEEEEEeCHHHhhhhhCCCCCCCeEEeecCCCCCeecc
Confidence            9999999999998877788999999999886 22 4678899999999999999987754 6788999997666789999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |||||||++.      .+|+||+||| ..|+..+.|++||||+.|++||+++|..
T Consensus       174 GDsGgPL~~~------~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          174 GDSGGPLVCG------DHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             TTTTCEEEET------TEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             ccCCCcEEeC------CEEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence            9999999982      2699999999 6898778899999999999999998853

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=6.3e-47  Score=355.52  Aligned_cols=221  Identities=26%  Similarity=0.524  Sum_probs=187.8

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+..                                                          
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~----------------------------------------------------------   22 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRP----------------------------------------------------------   22 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEecC----------------------------------------------------------
Confidence            6899999999999999997531                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccc-cc-cceEEEEEEEeCCCCCCCCCCcccceE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYS-VT-DNIHRVMQNILHPNYTTEGTSQYHDIA  349 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~-~~-~~~~~v~~i~~hp~y~~~~~~~~~DIA  349 (525)
                            ..++|+||||+++||||||||+.    ..+.|++|.+ ..... .. .....|.++++||+|+.  ....||||
T Consensus        23 ------~~~~CgGtLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~~v~~~~~Hp~y~~--~~~~~DIA   89 (227)
T 2psx_A           23 ------NQLYCGAVLVHPQWLLTAAHCRK----KVFRVRLGHY-SLSPVYESGQQMFQGVKSIPHPGYSH--PGHSNDLM   89 (227)
T ss_dssp             ------TEEEEEEEEEETTEEEECGGGCC----SSCEEEESCC-BSSCCCCTTCEEEEEEEEEECTTCCS--SSCTTCCE
T ss_pred             ------CCceEEEEEEcCCEEEEhHHcCC----CCcEEEEeee-ecccCCCCCcEEEEEEEEEeCCCCCC--CCCCCCEE
Confidence                  25899999999999999999985    3578999987 33221 22 23445999999999987  67789999


Q ss_pred             EEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeC
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVM  428 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~  428 (525)
                      ||||++|+.|+++++|||||......+..++++|||.+.......+..|++..+++++.++|...+.. +.+.|||++. 
T Consensus        90 Ll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~-  168 (227)
T 2psx_A           90 LIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGD-  168 (227)
T ss_dssp             EEEESSCCCCCSSSCCCCBCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHSTTTCCTTEEEECC-
T ss_pred             EEEeCCCCCCCCceeeeECCCCCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhhcCCCCCCCEEcccC-
Confidence            99999999999999999999776678899999999988765434577899999999999999987754 6789999985 


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ..+.+.|.|||||||++.      .+|+||+||| ..|+..+.|++||||+.|++||+++|..
T Consensus       169 ~~~~~~C~GDSGgPL~~~------~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  225 (227)
T 2psx_A          169 KAGRDSCQGDSGGPVVCN------GSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQA  225 (227)
T ss_dssp             STTCBCCTTCTTCEEEET------TEEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHH
T ss_pred             CCCCccCCCCCCcceeeC------CEEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhc
Confidence            456799999999999982      2799999999 6898778999999999999999999864

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=4.3e-47  Score=359.31  Aligned_cols=199  Identities=34%  Similarity=0.605  Sum_probs=168.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccc-ccceEEEEEEEeCCCCCCCCCCc-----------cc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQ-----------YH  346 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~-----------~~  346 (525)
                      .++|+||||+++||||||||+..    ...|++|.+ ...... ......|.++++||+|+.  ...           .|
T Consensus        23 ~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~~~~Hp~y~~--~~~~~~~~~~~~~~~~   95 (237)
T 2zch_P           23 RAVCGGVLVHPQWVLTAAHCIRN----KSVILLGRH-SLFHPEDTGQVFQVSHSFPHPLYDM--SLLKNRFLRPGDDSSH   95 (237)
T ss_dssp             SEEEEEEEEETTEEEECGGGCCS----SCEEEESCS-BSSSCCTTCEEEEEEEEEECTTSCG--GGGTSSSCCTTCBCTT
T ss_pred             CeEEEEEEecCCEEEEcHHhcCC----CceEEEecc-cccCCCCCcEEEEEEEEecCCCcch--hhhcccccccCCCCCc
Confidence            58899999999999999999964    356888877 333222 233445999999999986  332           68


Q ss_pred             ceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEE
Q psy3170         347 DIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCA  425 (525)
Q Consensus       347 DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca  425 (525)
                      |||||+|++|+.|+++++|||||......+..++++|||.+.......+..|+++.+++++.+.|...+.. +.+.|||+
T Consensus        96 DIALl~L~~~~~~~~~v~pi~Lp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca  175 (237)
T 2zch_P           96 DLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCA  175 (237)
T ss_dssp             CCEEEEESSCCCCCSSCCCCCCCSSCCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSSBCCTTEEEE
T ss_pred             ceEEEEeCCCCccCCcEeeeECCCCCCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCHHHhcccccCCCCceEEee
Confidence            99999999999999999999999887778899999999988765533477899999999999999987654 67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +...++.+.|.|||||||++      +++|+||+|||. .|+..+.|++||+|++|++||+++|..
T Consensus       176 ~~~~~~~~~C~GDSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  235 (237)
T 2zch_P          176 GRWTGGKSTCSGDSGGPLVC------NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVA  235 (237)
T ss_dssp             ECTTCSCBCCTTCTTCEEES------SSSEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             cCCCCCCcccCCCccCeEEE------CCEEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence            97666789999999999997      347999999997 798778999999999999999999864

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=7.8e-47  Score=353.79  Aligned_cols=196  Identities=29%  Similarity=0.558  Sum_probs=167.1

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccc-ccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSY-SVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~-~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.+    .+.|++|.+ .... ... .....|.++++||+|+.  ....||||||||++|
T Consensus        23 ~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~g~~-~~~~~~~~~~~~~~v~~~~~Hp~y~~--~~~~~DIALl~L~~~   95 (223)
T 2bdg_A           23 ELFCSGVLVHPQWVLSAAHCFQN----SYTIGLGLH-SLEADQEPGSQMVEASLSVRHPEYNR--PLLANDLMLIKLDES   95 (223)
T ss_dssp             CEEEEEEEEETTEEEECGGGCCS----SEEEEESCS-BSCGGGCTTCEEEEEEEEEECTTTTS--STTCSCCEEEEESSC
T ss_pred             CEEEEEEEecCCEEEEhHHhCCC----CeEEEEeee-ecCCCCCCCcEEEEEEEEEeCCCCCC--CCCcCcEEEEEECCc
Confidence            58899999999999999999953    577888876 3322 122 23345999999999988  677899999999999


Q ss_pred             cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C  435 (525)
                      +.|++.++|||||......+..++++|||.+...  ..+..|++..+++++.++|++.+.. +.+.|||++...++.+.|
T Consensus        96 v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C  173 (223)
T 2bdg_A           96 VSESDTIRSISIASQCPTAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSC  173 (223)
T ss_dssp             CCCCSSCCCCCBCSSCCCTTCEEEEEESCCCTTS--CCCSBCEEEEEEBCCHHHHHHHSTTTCCTTEEEECCSTTCCBCC
T ss_pred             ccCCCceecccCCCCCCCCCCEEEEEeCcccCCC--CCCCcceEEEEEEeCHHHhhhhhCCCCCCCeEeccCCCCCCCcC
Confidence            9999999999999877778899999999987653  4577899999999999999987754 678899998756678999


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .|||||||++.      .+|+||+|||. .|+..+.|++||||+.|++||+++|.
T Consensus       174 ~GDsGgPL~~~------~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          174 NGDSGGPLICN------GYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             TTCTTCEEEET------TEEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHH
T ss_pred             CCCCCchheEc------cEEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhc
Confidence            99999999982      37999999996 79877899999999999999999874

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=8e-47  Score=354.23  Aligned_cols=199  Identities=31%  Similarity=0.584  Sum_probs=172.6

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.. .........+ ..|.++++||+|+.  ....||||||+|++|+
T Consensus        22 ~~~C~GtLI~~~~VLTAAhC~~----~~~~v~~g~~-~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~DIAll~L~~~~   94 (223)
T 4i8h_A           22 YHFCGGSLINSQWVVSAAHCYK----SGIQVRLGED-NINVVEGNEQFISASKSIVHPSYNS--NTLNNDIMLIKLKSAA   94 (223)
T ss_dssp             SEEEEEEECSSSEEEECGGGCC----SSCEEEESCS-STTSCCSCCEEEEEEEEEECTTCCT--TTCTTCCEEEEESSCC
T ss_pred             CcEEEEEEEcCCEEEecHHhCC----CCcEEEEccc-cccccCCCcEEEEEeEEEECcCCCC--CCCcCCEEEEEECCcC
Confidence            4789999999999999999985    3578999987 3333333333 44999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .|+++++|||||......+..++++|||.+.......+..|++..+.+++.+.|...+.. +.+.+||++...++.+.|.
T Consensus        95 ~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~  174 (223)
T 4i8h_A           95 SLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQ  174 (223)
T ss_dssp             CCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTSSCBCCT
T ss_pred             cCCCceeceECCCCCCCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhCCCCCCCeEeccCCCCCCccCC
Confidence            999999999999888888999999999988765545678899999999999999988754 7789999987677889999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |||||||++      +.+|+||+|||..|+..+.|++||+|+.|++||+++|..
T Consensus       175 GDsGgPl~~------~~~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T 4i8h_A          175 GDSGGPVVC------SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TCTTCEEEE------TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             CCCCCcEEE------CCEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            999999998      337999999999998888899999999999999999864

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=5.9e-47  Score=359.43  Aligned_cols=230  Identities=29%  Similarity=0.482  Sum_probs=191.2

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|.....                                                         
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---------------------------------------------------------   23 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQSG---------------------------------------------------------   23 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESS---------------------------------------------------------
T ss_pred             CCCCeECCCCCcCeEEEEEecCC---------------------------------------------------------
Confidence            68999999999999999976421                                                         


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                           ...++|+||||+++||||||||+.......+.|++|.. ............|.++++||+|+.+.....||||||
T Consensus        24 -----~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl   97 (241)
T 1m9u_A           24 -----SWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLW-QQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAIL   97 (241)
T ss_dssp             -----SEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCS-BTTCCTTCEEEEEEEEEECTTTTCSSSTTTTCCEEE
T ss_pred             -----ceeeeeEEEEEeCCEEEecHHhCCCCCcceEEEEEEee-cCCCCCCceEEEEEEEEeCCCcCCCCCcccccEEEE
Confidence                 13589999999999999999999765556788999987 333323334455999999999943226778999999


Q ss_pred             EECCCcccCCCccceecCCC-C-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-----CCCCcEE
Q psy3170         352 KIAPPVEFSETLKPACLNRA-H-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-----LISSQLC  424 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~-~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-----~~~~~~C  424 (525)
                      +|++|+.|+++++|||||.. . ...+..++++|||.+...+ ..+..|++..+++++.++|...+..     +.+.|||
T Consensus        98 ~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~C  176 (241)
T 1m9u_A           98 HLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTN-NLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC  176 (241)
T ss_dssp             EESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEE
T ss_pred             EecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCC-CcccceeEeeEEEEcHHHhhhhhcccCCCcccCCcEE
Confidence            99999999999999999976 3 2467899999999887554 4678899999999999999875432     6788999


Q ss_pred             EEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEee----cCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         425 ATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSY----GRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       425 a~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~----g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      ++...++.+.|.|||||||++.. +  +|+|+||+||    +..|+..+.|++||||+.|++||+++|
T Consensus       177 a~~~~~~~~~C~GDSGgPL~~~~-~--~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~~~~  241 (241)
T 1m9u_A          177 VQDPAGNTGACNGDSGGPLNCPD-G--GTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             ECCTTSCCBCCTTCTTCEEEEES-S--SEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             ECcCCCCCeeecCcCCccEEEeC-C--CEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHhhhC
Confidence            98766678999999999999964 3  7999999999    467987788999999999999999875

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=1.8e-46  Score=357.74  Aligned_cols=210  Identities=28%  Similarity=0.512  Sum_probs=172.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.... ...+.|++|.+ .........+ ..|.++++||.|+.. ....||||||+|++|
T Consensus        22 ~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~DiALl~L~~~   99 (248)
T 2r0l_A           22 DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH-FFNRTTDVTQTFGIEKYIPYTLYSVF-NPSDHDLVLIRLKKK   99 (248)
T ss_dssp             TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCC-BTTCCCSSCEEECEEEEEECTTCCTT-STTTTCCEEEEECCS
T ss_pred             CceEEEEEEcCCEEEECHHHcCCCCCcCcEEEEEEeE-EcCCCCCccEEEeeeEEEeCCccCcC-CCCCCCEEEEEeCCc
Confidence            3789999999999999999997642 35688999987 3333332333 449999999999752 245699999999999


Q ss_pred             ----cccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhccc--C-CCCCCcEEEEe
Q psy3170         357 ----VEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQE--T-TLISSQLCATV  427 (525)
Q Consensus       357 ----~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~--~-~~~~~~~Ca~~  427 (525)
                          +.|+++++|||||....  ..+..++++|||.+.......+..|++..+++++.+.|....  . .+.+.|||++.
T Consensus       100 ~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~  179 (248)
T 2r0l_A          100 GDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGY  179 (248)
T ss_dssp             SSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESC
T ss_pred             ccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHHHhCCccccCCcCCCCEEeECC
Confidence                88999999999997543  467899999999887655345788999999999999998642  2 26789999987


Q ss_pred             CCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         428 MAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       428 ~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      ..++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||+|+.|++||+++|....
T Consensus       180 ~~~~~~~C~GDSGgPL~~~~~g--~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~  242 (248)
T 2r0l_A          180 FDCKSDACQGDSGGPLACEKNG--VAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPPR  242 (248)
T ss_dssp             SSSCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHHC---
T ss_pred             CCCCCcCCCCccCCeEEEEECC--cEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHHhcCCC
Confidence            6667899999999999997654  89999999999999877889999999999999999997643

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=1.1e-46  Score=358.42  Aligned_cols=228  Identities=32%  Similarity=0.574  Sum_probs=188.3

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|.+...                                                         
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---------------------------------------------------------   23 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDR---------------------------------------------------------   23 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS---------------------------------------------------------
T ss_pred             CCCCeECCCCCCCcEEEEEEcCC---------------------------------------------------------
Confidence            68999999999999999976421                                                         


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCC--CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIA  349 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIA  349 (525)
                           ...++|+||||+++||||||||+...  ....+.|++|.. ...  .......|+++++||+|+.  ....||||
T Consensus        24 -----~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~v~~g~~-~~~--~~~~~~~v~~i~~Hp~y~~--~~~~~DIA   93 (245)
T 2f9n_A           24 -----YWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQ-HLY--YQDQLLPVSRIIVHPQFYI--IQTGADIA   93 (245)
T ss_dssp             -----SEEEEEEEEEEETTEEEECGGGGCSSCCCGGGEEEECSCS-BTT--TTCCCBCEEEEEECTTCCS--SCCTTCCE
T ss_pred             -----CcceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEEeCCc-ccc--cCceEEEEEEEEECCCccC--CCCCCcEE
Confidence                 12689999999999999999999643  234577888866 222  2233445999999999987  67789999


Q ss_pred             EEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCc-ccccceEEEEEeeChhhhhcccC----------
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTK-ESLRLMKVVLDIINNDTCSKQET----------  416 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~-~~~~l~~~~v~~~~~~~C~~~~~----------  416 (525)
                      ||+|++|+.|+++++|||||....  ..+..++++|||.+...... .+..|+++.+++++.++|+..+.          
T Consensus        94 Ll~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~  173 (245)
T 2f9n_A           94 LLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR  173 (245)
T ss_dssp             EEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHHHHHHTTCCSCTTSC
T ss_pred             EEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhhhhhccccccccccc
Confidence            999999999999999999997643  46789999999987654421 24579999999999999987652          


Q ss_pred             CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         417 TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       417 ~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .+.+.|||++.  .+.+.|.|||||||++..++  +|+|+||+|||.+|+..+.|++||||+.|++||+++|.+
T Consensus       174 ~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~~g--~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  243 (245)
T 2f9n_A          174 IIRDDMLCAGN--SQRDSCQGDSGGPLVCKVNG--TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPK  243 (245)
T ss_dssp             CSCTTEEEECC--SSSBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHSCC
T ss_pred             ccccccEeecC--CCCCcCCCCCCCceEEEECC--EEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhhc
Confidence            25678999973  46789999999999997655  899999999999998778899999999999999999864

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=9.7e-47  Score=353.78  Aligned_cols=198  Identities=31%  Similarity=0.575  Sum_probs=165.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeCCCC-CCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNY-TTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y-~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.+ .........+ ..|.++++||+| +.+.....||||||+|++|
T Consensus        23 ~~~CgGsLI~~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~   97 (225)
T 1npm_A           23 RLICGGVLVGDRWVLTAAHCKK----QKYSVRLGDH-SLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNS   97 (225)
T ss_dssp             EEEEEEEEEETTEEEECGGGCC----SSCEEEESCS-BTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSC
T ss_pred             ceEEEEEEECCCEEEEhHHcCC----CCceEEEeee-EcCCCCCCcEEEEEEEEEECCCCCCCCccCccccEEEEeeCCc
Confidence            5899999999999999999984    4578999987 3333222333 449999999999 4422456799999999999


Q ss_pred             cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C  435 (525)
                      +.|+++++|||||......+..++++|||.+.......+..|+++.+++++.++|...+.. +.+.|||++... +.+.|
T Consensus        98 ~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~-~~~~C  176 (225)
T 1npm_A           98 ANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSN-GADTC  176 (225)
T ss_dssp             CCCSSSSCCCEECSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHSTTTCCTTEEEEECTT-CCBCC
T ss_pred             ccCCCceeceECCCCCCCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHHhCCCCCCCEEeecCCC-CCeec
Confidence            9999999999999877778899999999987543335678899999999999999987754 678899998643 67899


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      .|||||||++      +.+|+||+||| ..|+..+.|++||||+.|++||+++|
T Consensus       177 ~GDSGgPL~~------~~~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~  224 (225)
T 1npm_A          177 QGDSGGPLVC------DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM  224 (225)
T ss_dssp             TTCTTCEEEE------TTEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCchheE------CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence            9999999998      23699999999 67987788999999999999999886

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=1.1e-46  Score=352.94  Aligned_cols=198  Identities=31%  Similarity=0.544  Sum_probs=168.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.. ... ........|.++++||+|+.  ....||||||+|++|+.
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~-~~~-~~~~~~~~v~~~~~Hp~y~~--~~~~~DIALl~L~~~~~   94 (224)
T 2qxi_A           23 QLHCGGVLVNERWVLTAAHCKM----NEYTVHLGSD-TLG-DRRAQRIKASKSFRHPGYST--QTHVNDLMLVKLNSQAR   94 (224)
T ss_dssp             EEEEEEEEEETTEEEECGGGCC----SCEEEEESCS-BTT-CTTSEEEEECEEEECTTCCT--TTCTTCCEEEECSSCCC
T ss_pred             CeEEEEEEecCCEEEEhHHcCC----CCcEEEEeee-ecC-CCccEEEEEEEEEECCCCCC--CCCcCcEEEEEeCCCCc
Confidence            4589999999999999999983    4688999976 332 22233445999999999988  67789999999999999


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCcC
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~g  437 (525)
                      |++.++|||||......+..++++|||.+.......+..|++..+++++.++|.+.+.. +.+.|||++...++.+.|.|
T Consensus        95 ~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~G  174 (224)
T 2qxi_A           95 LSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNG  174 (224)
T ss_dssp             CBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGGGCCTTEEEEECTTCCCBCCTT
T ss_pred             CCCceeeEECCCCCCCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcCcCCCCeEEecCCCCCCccCCC
Confidence            99999999999887778899999999988644334577899999999999999887644 67889999876667899999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ||||||++      +.+|+||+||| ..|+..+.|++||+|++|++||+++|..
T Consensus       175 DSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  222 (224)
T 2qxi_A          175 DSGGPLVC------RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK  222 (224)
T ss_dssp             CTTCEEEE------TTEEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             CccccEEE------CCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            99999998      23699999999 7898778899999999999999999864

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=1.5e-46  Score=377.82  Aligned_cols=240  Identities=29%  Similarity=0.564  Sum_probs=196.3

Q ss_pred             ccccCC--CCCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhhe
Q psy3170         182 TQCDIL--AMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLL  259 (525)
Q Consensus       182 ~~Cg~~--~~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~  259 (525)
                      ..||..  ...||+||.++..++|||+|+|.+.                                               
T Consensus       106 ~~Cg~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-----------------------------------------------  138 (372)
T 1z8g_A          106 QDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYD-----------------------------------------------  138 (372)
T ss_dssp             CCCSCCCCC---CBSCEECCTTSSTTEEEEEET-----------------------------------------------
T ss_pred             cccCCcCCCCCceECCEECCCCCCCcEEEEEeC-----------------------------------------------
Confidence            357765  4579999999999999999999752                                               


Q ss_pred             eeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCC--CCCceEEEEEEEeecccccccceEEEEEEEeCCCC
Q psy3170         260 FISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY  337 (525)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y  337 (525)
                                        ..++|+||||+++||||||||+...  ....+.|++|.. .... .......|+++++||+|
T Consensus       139 ------------------~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~-~~~~-~~~~~~~V~~i~~Hp~y  198 (372)
T 1z8g_A          139 ------------------GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAV-AQAS-PHGLQLGVQAVVYHGGY  198 (372)
T ss_dssp             ------------------TEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCS-BTTC-TTSEEECEEEEEEETTC
T ss_pred             ------------------CceEEEEEEecCCEEEEChhhcCCCCCccceEEEEEeeE-eccC-CCCcEEEEEEEEECCCc
Confidence                              2589999999999999999999532  235678889876 3222 12234459999999999


Q ss_pred             ------CCCCCCcccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChh
Q psy3170         338 ------TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINND  409 (525)
Q Consensus       338 ------~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~  409 (525)
                            +.  ....||||||||++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.+
T Consensus       199 ~~~~~~~~--~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~-~~~~~L~~~~v~ii~~~  275 (372)
T 1z8g_A          199 LPFRDPNS--EENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYG-QQAGVLQEARVPIISND  275 (372)
T ss_dssp             GGGTCTTC--CCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEEECHH
T ss_pred             cccccCCC--CCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCC-CCCceeeEEEEEecChH
Confidence                  44  56789999999999999999999999997643  457899999999887654 56788999999999999


Q ss_pred             hhhcc--cC-CCCCCcEEEEeCCCCcCCCcCCCCCcceeecC--CCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhh
Q psy3170         410 TCSKQ--ET-TLISSQLCATVMAGGKDTCQGDSGGPLQTIMP--DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI  484 (525)
Q Consensus       410 ~C~~~--~~-~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~--~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI  484 (525)
                      .|...  +. .+.+.||||+...++.++|.|||||||++...  ..++|+|+||+|||..|+..+.|++||||+.|++||
T Consensus       276 ~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~WI  355 (372)
T 1z8g_A          276 VCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI  355 (372)
T ss_dssp             HHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHH
T ss_pred             HhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHH
Confidence            99864  22 36789999987667789999999999999754  124899999999999999878999999999999999


Q ss_pred             ccccccc
Q psy3170         485 VHTVWPD  491 (525)
Q Consensus       485 ~~~i~~~  491 (525)
                      +++|...
T Consensus       356 ~~~i~~~  362 (372)
T 1z8g_A          356 FQAIKTH  362 (372)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhcc
Confidence            9999654

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=1.8e-46  Score=352.52  Aligned_cols=221  Identities=29%  Similarity=0.418  Sum_probs=184.6

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQK--------------------------------------------------------   24 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSS--------------------------------------------------------
T ss_pred             CCCCeECCCCCcCcEEEEEEECCC--------------------------------------------------------
Confidence            689999999999999999764311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+..    .+.|++|.+ +...... .....|+++++||+|+.  ....|||||
T Consensus        25 ------~~~~CgGtLI~~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIAL   91 (227)
T 1iau_A           25 ------SLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGAH-NIKEQEPTQQFIPVKRPIPHPAYNP--KNFSNDIML   91 (227)
T ss_dssp             ------CEEEEEEEEEETTEEEECGGGCCS----EEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEE
T ss_pred             ------CceEEEEEEEcCCEEEECHHhCCC----ceEEEEccc-cccCCCCccEEEEEEEEECCCCCCC--CCCCCCeEE
Confidence                  148899999999999999999953    478999987 3333222 33444999999999988  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CC-CCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LI-SSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~-~~~~Ca~  426 (525)
                      |||++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|++..+++++.++|+..+.. +. ..++|++
T Consensus        92 l~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~Ca~  170 (227)
T 1iau_A           92 LQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVG  170 (227)
T ss_dssp             EEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEBCCHHHHHHHTTTTCCTTTEEEES
T ss_pred             EEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCC-CcCceeeEeeeeeechHHhhhHhccccCCCcEEEeE
Confidence            99999999999999999997664  567899999999886544 5678899999999999999887654 33 4499998


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ...++.+.|.|||||||++.      .+|+||+|||  |+....|++||||+.|++||+++|..
T Consensus       171 ~~~~~~~~C~GDSGgPL~~~------~~l~Gi~S~g--c~~~~~p~vyt~v~~~~~WI~~~~~~  226 (227)
T 1iau_A          171 DPEIKKTSFKGDSGGPLVCN------KVAQGIVSYG--RNNGMPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             CTTSCCBCCTTCTTSEEEET------TEEEEEEEEE--CTTSCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCCCCCeeeecCCCchheEe------eEEEEEEeEe--cCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            76667899999999999982      2799999999  87667899999999999999998854

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=1e-46  Score=352.86  Aligned_cols=196  Identities=30%  Similarity=0.540  Sum_probs=166.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.... ...+.|++|.. ..  ........|+++++||+|+.  ....||||||+|++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~-~~--~~~~~~~~v~~~~~hp~y~~--~~~~~DIALl~L~~~v   97 (222)
T 1eq9_A           23 SHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTN-YL--SESGDVYDVEDAVVNKNYDD--FLLRNDVALVHLTNPI   97 (222)
T ss_dssp             EEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCS-BT--TSCCEEEEEEEEEECTTCBT--TTTBCCCEEEEESSCC
T ss_pred             CeEEEEEEeeCCEEEEhhhcCCCCCCCceEEEEECce-ec--CCCCeEEEEEEEEECCCCCC--CCCCCCEEEEEECCcc
Confidence            5889999999999999999997642 45678899876 32  22334455999999999987  6778999999999999


Q ss_pred             ccCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhh-cccCCCCCCcEEEEeCCCCcCCC
Q psy3170         358 EFSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCS-KQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       358 ~~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~-~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      .|+++++|||||.... ..+..++++|||.+...+ ..+..|+++.+++++.+.|. ..+. +.+.++|++. ..+.+.|
T Consensus        98 ~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~-~~~~~~Ca~~-~~~~~~C  174 (222)
T 1eq9_A           98 KFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGG-NTPNALQEIELIVHPQKQCERDQWR-VIDSHICTLT-KRGEGAC  174 (222)
T ss_dssp             CCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTC-CCCSBCEEEEEEEECHHHHHHHSSS-CCTTEEEECC-CTTCBCC
T ss_pred             ccCCceEccCCCCCCcCCCCCEEEEEcccccCCCC-cccchheEeEEEEeCHHHhCcccCC-CCccEEeecC-CCCCeee
Confidence            9999999999998766 577889999999886544 45778999999999999998 5553 6789999976 4567899


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .|||||||++.      .+|+||+|||..|+. +.|++||+|++|++||+++|.
T Consensus       175 ~GDSGgPL~~~------~~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~~  221 (222)
T 1eq9_A          175 HGDSGGPLVAN------GAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK  221 (222)
T ss_dssp             TTCTTCEEEET------TEEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSC
T ss_pred             eCCccceEEEC------CEEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHHhh
Confidence            99999999982      279999999999985 789999999999999999885

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=4.1e-47  Score=360.09  Aligned_cols=225  Identities=30%  Similarity=0.503  Sum_probs=164.9

Q ss_pred             CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeee
Q psy3170         190 PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFL  269 (525)
Q Consensus       190 ~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (525)
                      .||+||.++..++|||+|+|+ ..                                                        
T Consensus         2 arIvgG~~a~~~~~Pw~v~l~-~~--------------------------------------------------------   24 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAVY-RF--------------------------------------------------------   24 (240)
T ss_dssp             -----------CCCTTEEEEE-CT--------------------------------------------------------
T ss_pred             CcccCCeECCCCCcCCEEEEE-eC--------------------------------------------------------
Confidence            479999999999999999993 21                                                        


Q ss_pred             ecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccc-ccceEEEEEEEeCCCCCCC--------
Q psy3170         270 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTE--------  340 (525)
Q Consensus       270 ~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~-~~~~~~v~~i~~hp~y~~~--------  340 (525)
                              ..++|+||||+++||||||||+.    ..+.|++|.. ...... ......|.++++||+|+..        
T Consensus        25 --------~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~   91 (240)
T 1sgf_A           25 --------NKYQCGGVLLDRNWVLTAAHCYN----DKYQVWLGKN-NFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQ   91 (240)
T ss_dssp             --------TSCCEEEEECSSSEEEECGGGCC----SCCEEEECC-----C-CTTCEEEEEEEEEECTTSCGGGC----CC
T ss_pred             --------CCeEEEEEEecCCEEEECHHhCC----CCceEEeCCc-ccccCCCCceEEEEEEEEcCCCCccccccccccc
Confidence                    14789999999999999999995    3578999987 332222 2334459999999999862        


Q ss_pred             -CCCcccceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-C
Q psy3170         341 -GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-L  418 (525)
Q Consensus       341 -~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~  418 (525)
                       .....||||||+|++|+.|+++++|||||......+..++++|||.+.......+..|+++.+++++.++|...+.. +
T Consensus        92 ~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~  171 (240)
T 1sgf_A           92 PEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKV  171 (240)
T ss_dssp             TTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEC-------C---------CEEEEEECTHHHHTTCSSBC
T ss_pred             ccCCCCCceEEEEeCCcCcCCCcccccCCCCCCCCCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCHHHhhhhhCCCc
Confidence             11567999999999999999999999999887778899999999988654434577899999999999999987654 6


Q ss_pred             CCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         419 ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       419 ~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .+.|||++...++.+.|.|||||||++      +.+|+||+||| ..|+..+.|++||+|+.|++||+++|..
T Consensus       172 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~------~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  238 (240)
T 1sgf_A          172 TDAMLCAGEMDGGSYTCEHDSGGPLIC------DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN  238 (240)
T ss_dssp             CTTEEEEEECSSSEEECCCCTTCEEEE------TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHS
T ss_pred             CCCeEeEccCCCCCCCCCCCCcCcEEE------ccEEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHHhc
Confidence            788999998666788999999999998      23799999999 6798778899999999999999999864

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=6e-47  Score=358.33  Aligned_cols=199  Identities=30%  Similarity=0.520  Sum_probs=168.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCc-----------cc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQ-----------YH  346 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~-----------~~  346 (525)
                      .++|+||||+++||||||||+.    ..+.|++|.. ........ ....|.++++||+|+.  ...           .|
T Consensus        23 ~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~~~~~~~~~~~~   95 (237)
T 1gvz_A           23 HFQCGGVLVHPQWVLTAAHCMS----DDYQIWLGRH-NLSKDEDTAQFHQVSDSFLDPQFDL--SLLKKKYLRPYDDISH   95 (237)
T ss_dssp             EEEEEEEEEETTEEEECGGGCC----SSCEEEESCS-BTTSCCTTCEEECEEEEEECTTSCG--GGGGCSSCCTTSCCTT
T ss_pred             ceEEEeEEeeCCEEEEcHHhCC----CCCeEEEeec-ccccCCCCceEEEeeeEecCCccCc--ccccccccccccccCC
Confidence            5789999999999999999985    4678999987 43333333 3344999999999986  444           79


Q ss_pred             ceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEE
Q psy3170         347 DIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCA  425 (525)
Q Consensus       347 DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca  425 (525)
                      |||||+|++|+.|+++++|||||......+..++++|||.+.......+..|+++.+++++.++|...+.. +.+.+||+
T Consensus        96 DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca  175 (237)
T 1gvz_A           96 DLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCA  175 (237)
T ss_dssp             CCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCGGGCCTTEEEE
T ss_pred             ceEEEEeCCCcccCCcEeeeECCCCCCCCCCEEEEECCCcccCCCCCCCCccEEEEEeEeChhHhhhhhhhcCCCceEEE
Confidence            99999999999999999999999887778899999999987543335678899999999999999987743 67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +...++.+.|.|||||||++      +.+|+||+|||. .|+..+.|++||||+.|++||+++|..
T Consensus       176 ~~~~~~~~~C~GDSGgPL~~------~~~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  235 (237)
T 1gvz_A          176 THRDDSGSICLGDSGGALIC------DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEK  235 (237)
T ss_dssp             ECSSTTCEECGGGTTCEEEE------TTEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHH
T ss_pred             eeCCCCCccCCCCccCcEee------CCEEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence            97666778999999999998      236999999997 898778899999999999999999864

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=3.3e-46  Score=352.44  Aligned_cols=199  Identities=27%  Similarity=0.484  Sum_probs=166.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..   ....|++|.+ .........+ ..|+++++||+|+.  ....||||||+|++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~~---~~~~v~~G~~-~~~~~~~~~~~~~v~~~~~Hp~y~~--~~~~~DIALl~L~~~~   96 (234)
T 1orf_A           23 KTICAGALIAKDWVLTAAHCNLN---KRSQVILGAH-SITREEPTKQIMLVKKEFPYPCYDP--ATREGDLKLLQLTEKA   96 (234)
T ss_dssp             SCEEEEEEEETTEEEECTTCCCC---TTCEEEESCS-BSSSCCTTCEEECEEEEEECTTCCT--TTCTTCCEEEEESSCC
T ss_pred             ceEEEEEEeeCCEEEEchhcCCC---CCceEEEecc-ccCcCCCceEEEEEEEEEcCCCCCC--CCCCCCEEEEEECCcC
Confidence            57899999999999999999964   5678999987 3333232234 44999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhc--ccC---CCCCCcEEEEeCCC
Q psy3170         358 EFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK--QET---TLISSQLCATVMAG  430 (525)
Q Consensus       358 ~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~--~~~---~~~~~~~Ca~~~~~  430 (525)
                      .|+++++|||||....  ..+..++++|||.+...+ ..+..|++..+++++.++|.+  .+.   .+.+.|||++...+
T Consensus        97 ~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~  175 (234)
T 1orf_A           97 KINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSA-SWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRG  175 (234)
T ss_dssp             CCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECSSC
T ss_pred             ccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCC-CccccceEeEEEeeCHHHcCCccccccCCccCCCEEEecCCCC
Confidence            9999999999997665  567899999999886544 457789999999999999983  332   12338999997666


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcC-Cchhhhcccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVS-YYVPWIVHTVWP  490 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~-~~~~WI~~~i~~  490 (525)
                      +.+.|.|||||||++.      .+|+||+|||.  .|+..+.|++||+|+ +|++||+++|..
T Consensus       176 ~~~~C~GDSGgPL~~~------~~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~~~  232 (234)
T 1orf_A          176 GRDSCNGDSGSPLLCE------GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG  232 (234)
T ss_dssp             CCBCCTTCTTCEEEET------TEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC
T ss_pred             CCcCCCCCCCCeEEEC------CEEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHHHh
Confidence            7899999999999982      27999999997  898778899999999 999999998864

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=1.6e-46  Score=357.55  Aligned_cols=225  Identities=33%  Similarity=0.593  Sum_probs=186.0

Q ss_pred             CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeee
Q psy3170         190 PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFL  269 (525)
Q Consensus       190 ~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (525)
                      .||+||.++..++|||+|+|....                                                        
T Consensus        16 ~rIvgG~~a~~~~~Pw~v~l~~~~--------------------------------------------------------   39 (247)
T 1ddj_A           16 GRVVGGCVAHPHSWPWQVSLRTRF--------------------------------------------------------   39 (247)
T ss_dssp             TTCTTCEECCTTSSTTEEEEECTT--------------------------------------------------------
T ss_pred             CCcCCCEECCCCCCCcEEEEEcCC--------------------------------------------------------
Confidence            489999999999999999996421                                                        


Q ss_pred             ecCCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccce
Q psy3170         270 EEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI  348 (525)
Q Consensus       270 ~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DI  348 (525)
                              ..++|+||||+++||||||||+... ....+.|++|.+.............|.+++.||.        .|||
T Consensus        40 --------~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~--------~~DI  103 (247)
T 1ddj_A           40 --------GMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT--------RKDI  103 (247)
T ss_dssp             --------SCEEEEEEEEETTEEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEEEECTT--------SCSC
T ss_pred             --------CCeEEEEEEeeCCEEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeEEcCCC--------CCcE
Confidence                    2589999999999999999999764 2356789999873222222223344999999985        2799


Q ss_pred             EEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCCcE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISSQL  423 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~~~  423 (525)
                      |||||++|+.|+++++|||||....  ..+..++++|||.+...  ..+..|+++.+++++.+.|.+...   .+.+.||
T Consensus       104 ALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~--~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~  181 (247)
T 1ddj_A          104 ALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT--FGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTEL  181 (247)
T ss_dssp             EEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSS--TTTTBCEEEEEEEECHHHHTSTTTTTTCCCTTEE
T ss_pred             EEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCC--CCCccceEEeeeecCHHHhcchhccCCCCcCCeE
Confidence            9999999999999999999997653  45788999999987643  246789999999999999987531   2678899


Q ss_pred             EEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         424 CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       424 Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |++...++.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||+++|..
T Consensus       182 Ca~~~~~~~~~C~GDSGgPL~~~~~~--~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  246 (247)
T 1ddj_A          182 CAGHLAGGTDSCQGDAGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             EESCSSSCCCBCCSCTTCEEEEECSS--SEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHHHT
T ss_pred             eecCCCCCCccccCcCcCcEEEEECC--cEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHhhc
Confidence            99876667899999999999997654  899999999999998778899999999999999999864

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=3.6e-46  Score=350.34  Aligned_cols=221  Identities=31%  Similarity=0.508  Sum_probs=184.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTSG--------------------------------------------------------   24 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSS--------------------------------------------------------
T ss_pred             CCCCeECCCCCcCCEEEEEEeCCC--------------------------------------------------------
Confidence            689999999999999999764311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+..    .+.|++|.+ +...... .....|.++++||+|+.  ....|||||
T Consensus        25 ------~~~~CgGsLI~~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIAL   91 (227)
T 1euf_A           25 ------KSHICGGFLVREDFVLTAAHCLGS----SINVTLGAH-NIMERERTQQVIPVRRPIPHPDYND--ETLANDIML   91 (227)
T ss_dssp             ------SEEEEEEEEEETTEEEECGGGCCE----EEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEE
T ss_pred             ------CceEEEEEEeeCCEEEECHHHCCC----CcEEEEccc-ccCCCCCccEEEEEEEEEeCCCCCC--CCCcCceEE
Confidence                  258999999999999999999953    578899987 3333222 33444999999999987  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEe
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATV  427 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~  427 (525)
                      |||++|+.|+++++|||||....  ..+..++++|||.+.... ..+..|+++.+++++.++|...+.. +.+.|||++.
T Consensus        92 l~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~  170 (227)
T 1euf_A           92 LKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNM-PSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGD  170 (227)
T ss_dssp             EEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTC-CBCSBCEEEEEEBCCTHHHHTTCTTCCTTTEEEESC
T ss_pred             EEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCC-CCchhheEeEeccccHHHhhHhhcCcCCCcEEEccC
Confidence            99999999999999999997654  567899999999886544 4577899999999999999987754 6778999986


Q ss_pred             CCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         428 MAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       428 ~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ..+....|.|||||||++      +.+|+||+|||  |+..+.|++||||+.|++||+++|..
T Consensus       171 ~~~~~~~~~GDsGgPL~~------~~~l~Gi~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~~  225 (227)
T 1euf_A          171 PSKRKNSFSGDSGGPLVC------NGVAQGIVSYG--RNDGTTPDVYTRISSFLSWIHSTMRR  225 (227)
T ss_dssp             TTSCCBCCTTCTTCEEEE------TTEEEEEEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC-
T ss_pred             CCCCCcccccCCCCceEE------CCEEEEEEEEe--CCCCCCCeEEEEHHHhHHHHHHHHhh
Confidence            544356789999999998      23799999999  77667899999999999999999864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=3.7e-46  Score=352.65  Aligned_cols=226  Identities=28%  Similarity=0.512  Sum_probs=188.0

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKSGS--------------------------------------------------------   24 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEecCC--------------------------------------------------------
Confidence            689999999999999999865311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCc--ccce
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQ--YHDI  348 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~--~~DI  348 (525)
                           ...++|+||||+++||||||||+..  ...+.|++|.+ .........+ ..|.++++||+|+.  ...  .+||
T Consensus        25 -----~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~~~Di   94 (236)
T 1elt_A           25 -----SYYHTCGGSLIRQGWVMTAAHCVDS--ARTWRVVLGEH-NLNTNEGKEQIMTVNSVFIHSGWNS--DDVAGGYDI   94 (236)
T ss_dssp             -----EEEEEEEEEEEETTEEEECHHHHSS--CCCEEEEESCS-BTTSCCSCCEEECEEEEEECTTCCT--TCGGGCCCC
T ss_pred             -----ceeeEEEEEEEeCCEEEECHHhhCC--cCceEEEEccc-cCCCCCCCcEEEEEEEEEECCCCCC--CCCCCCccE
Confidence                 1248899999999999999999975  36788999987 4433333334 44999999999987  444  7899


Q ss_pred             EEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhccc--C-CCCCCcE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQE--T-TLISSQL  423 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~--~-~~~~~~~  423 (525)
                      |||+|++|+.|++.++|||||....  ..+..++++|||.+...+ ..+..|++..+++++.+.|...+  . .+.+.||
T Consensus        95 ALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~  173 (236)
T 1elt_A           95 ALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGG-PLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMV  173 (236)
T ss_dssp             EEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTC-CCCSBCEEEECCEECHHHHTSTTTTGGGSCTTEE
T ss_pred             EEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCC-CcChhheEeEeeecCHHHhccccccCCcCCcceE
Confidence            9999999999999999999997653  467889999999886544 45778999999999999998753  2 2678899


Q ss_pred             EEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccc
Q psy3170         424 CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       424 Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |++.  .+.+.|.|||||||++..++  +|+|+||+||+.  +|+..+.|++||||+.|++||+++|
T Consensus       174 Ca~~--~~~~~C~GDSGgPL~~~~~g--~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  236 (236)
T 1elt_A          174 CAGG--GANSGCNGDSGGPLNCQVNG--SYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             EECC--SSCBCCTTCTTCEEEEEETT--EEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             EecC--CCCccCCCCCCCeeEEEECC--EEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhhC
Confidence            9984  24789999999999998754  899999999984  8987788999999999999999875

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=1.3e-46  Score=352.86  Aligned_cols=198  Identities=29%  Similarity=0.527  Sum_probs=167.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.......+.|++|.. ..  ........|.++++||+|+.  .  .||||||||++|+.
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~-~~--~~~~~~~~v~~i~~hp~y~~--~--~~DiALl~L~~~~~   95 (224)
T 1pq7_A           23 GPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSL-SR--TSGGITSSLSSVRVHPSYSG--N--NNDLAILKLSTSIP   95 (224)
T ss_dssp             EEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCS-BS--SSSSEEECEEEEEECTTCBT--T--BTCCEEEEESSCCC
T ss_pred             CeEEEEEEecCCEEEEcHHccCCCCCCceEEEeCcc-ee--cCCCEEEEEEEEEECCCCCC--C--CCCEEEEEeCCCCc
Confidence            588999999999999999999765556788999977 32  22333445999999999987  3  69999999999999


Q ss_pred             cCCCccceecC--CCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC--CCCCCcEEEEeCCCCcCC
Q psy3170         359 FSETLKPACLN--RAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDT  434 (525)
Q Consensus       359 ~~~~v~picL~--~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~--~~~~~~~Ca~~~~~~~~~  434 (525)
                      |+++++|||||  ......+..++++|||.+.......+..|+++.+++++.+.|+..+.  .+.+.|||++...++.+.
T Consensus        96 ~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~  175 (224)
T 1pq7_A           96 SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDS  175 (224)
T ss_dssp             CBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBC
T ss_pred             CCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCCCCCCCeEEeecCCCCCCC
Confidence            99999999999  44446788999999998876543456789999999999999988764  367899999876667899


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |.|||||||++. +    .+|+||+|||..|+.++.|++||||+.|++||+++|
T Consensus       176 C~GDSGgPL~~~-~----g~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          176 CQGDSGGPIVDS-S----NTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             CTTCTTCEEECT-T----CCEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             CcCCCCcceECc-C----CeEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence            999999999874 1    279999999999997789999999999999999875

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=5.5e-46  Score=349.55  Aligned_cols=221  Identities=29%  Similarity=0.486  Sum_probs=187.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKVG--------------------------------------------------------   24 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSS--------------------------------------------------------
T ss_pred             CCCCEECCCCCcCCEEEEEEEeCC--------------------------------------------------------
Confidence            689999999999999999865322                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                           +..++|+||||+++||||||||+.    ..+.|++|.+ ........ ....|.++++||+|+.  ....|||||
T Consensus        25 -----~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~DIAL   92 (227)
T 3fzz_A           25 -----GKKMFCGGFLVRDKFVLTAAHCKG----RSMTVTLGAH-NIKAKEETQQIIPVAKAIPHPDYNP--DDRSNDIML   92 (227)
T ss_dssp             -----SCEEEEEEEEEETTEEEECTTCCC----EEEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCBT--TTTBTCCEE
T ss_pred             -----CceeEEEEEEEeCCEEEECcccCC----CCcEEEEccc-ccCCCCCCceEEEEEEEEECcCCCC--CCCcCCEEE
Confidence                 136899999999999999999983    4678899987 33333333 3344999999999988  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~  426 (525)
                      |+|++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.+.|...+..  ....++|++
T Consensus        93 l~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~  171 (227)
T 3fzz_A           93 LKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDG-EFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVG  171 (227)
T ss_dssp             EEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTS-CCCSBCEEEEEEBCCHHHHHHHHTTTCCTTTEEEEC
T ss_pred             EEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCC-CCCCeeeEEEeeeecHHHhhhhhccccCCCceEEEe
Confidence            99999999999999999997765  568899999999876655 5678899999999999999876543  467899998


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ....+.+.|.|||||||++      +.+|+||+|||..|+.  .|++||+|+.|++||+++|+
T Consensus       172 ~~~~~~~~C~gDsGgPl~~------~~~l~Gi~S~g~~c~~--~p~vyt~V~~~~~WI~~~i~  226 (227)
T 3fzz_A          172 DSKIKGASFEEDSGGPLVC------KRAAAGIVSYGQTDGS--APQVFTRVLSFVSWIKKTMK  226 (227)
T ss_dssp             CCSSCBCCTTTTTTCEEEE------TTEEEEEEEECCTTCS--SSEEEEEGGGTHHHHHHHHT
T ss_pred             CCCCCCcccccCCccceEE------ecCCcEEEEECCCCCC--CCeEEEEhHHhHHHHHHHHh
Confidence            7667789999999999998      3479999999998874  39999999999999999885

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=4.7e-46  Score=348.83  Aligned_cols=219  Identities=28%  Similarity=0.474  Sum_probs=182.3

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSPA--------------------------------------------------------   24 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTTT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEECCC--------------------------------------------------------
Confidence            689999999999999999764311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+..    .+.|++|.+ ....... .....|+++++||+|+.  ....|||||
T Consensus        25 ------~~~~CgGsLI~~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~DIAL   91 (224)
T 1cgh_A           25 ------GQSRCGGFLVREDFVLTAAHCWGS----NINVTLGAH-NIQRRENTQQHITARRAIRHPQYNQ--RTIQNDIML   91 (224)
T ss_dssp             ------TSCEEEEEEEETTEEEECGGGCCS----SEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCBT--TTTBSCCEE
T ss_pred             ------CCeEEEEEEeeCCEEEEhHHhCCC----CCEEEEeec-ccCCCCCccEEEEEEEEEcCCCCCC--CCCcCCEEE
Confidence                  148899999999999999999964    588999987 3333222 33444999999999988  678899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCC-CCcEEEEe
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATV  427 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~-~~~~Ca~~  427 (525)
                      |||++|+.|+++++|||||....  ..+..++++|||.+.. . ..+..|++..+++++.++|...+..+. +.+||++.
T Consensus        92 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~-~-~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~  169 (224)
T 1cgh_A           92 LQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSM-R-RGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGD  169 (224)
T ss_dssp             EEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSS-S-CCCSBCEEEEEEBCCHHHHHHHCTTCCTTTEEEECC
T ss_pred             EEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCCC-C-CCCCcceEEEEEeeCHHHHHHHhCcCCCcceEeecc
Confidence            99999999999999999997654  5678999999998872 2 457789999999999999998775543 45999987


Q ss_pred             CCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         428 MAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       428 ~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ..++.+.|.|||||||++.      .+|+||+|||. |. ...|++||||+.|++||+++|+
T Consensus       170 ~~~~~~~C~GDSGgPL~~~------~~l~Gi~S~g~-~~-~~~p~vyt~V~~~~~WI~~~~~  223 (224)
T 1cgh_A          170 RRERKAAFKGDSGGPLLCN------NVAHGIVSYGK-SS-GVPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             TTSCCBCCTTCTTCEEEET------TEEEEEEEECC-TT-CCSCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCeEeeCCCccceEEc------cEEEEEEEEEC-CC-CCCCeEEEEHHHhHHHHHHHhh
Confidence            6567899999999999982      27999999997 43 4579999999999999999874

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=3.2e-46  Score=351.71  Aligned_cols=201  Identities=27%  Similarity=0.460  Sum_probs=171.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccc-ccc-ceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYS-VTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~-~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+..    .+.|++|.+ ..... ... ....+.++++||.|+.  ....||||||||++|
T Consensus        22 ~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~DIALl~L~~~   94 (231)
T 2aiq_A           22 GSLCGGTLINQEWVLTARHCDRG----NMRIYLGMH-NLKVLNKDALRRFPKEKYFCLNTRND--TIWDKDIMLIRLNRP   94 (231)
T ss_dssp             TEEEEEEECSSSEEEECGGGCCS----SCEEEESCS-CTTSCCTTCEEECEEEEECCSSCCSS--STTTTCCEEEEESSC
T ss_pred             CCeEEEEEEeCCEEEEcHHcCCC----CCEEEEecc-cccccCCCceEEEEEEEEEECCCCCC--CCCCCCEEEEEecCC
Confidence            37899999999999999999864    578899987 33322 222 2334999999999988  677899999999999


Q ss_pred             cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         357 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                      +.|+++++|||||......+..++++|||.+.......+..|+++.+++++.++|+..+..+.+.+||++...++.+.|.
T Consensus        95 v~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  174 (231)
T 2aiq_A           95 VRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTCK  174 (231)
T ss_dssp             CCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCCSSEEEEECTTCSCBCCT
T ss_pred             CCCCCcEEeeECCCCCCCCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhcCCCcCcEEeccCCCCCcccC
Confidence            99999999999998877788999999999877554345788999999999999999887667889999987667789999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      |||||||++.      .+|+||+||| ..|+..+.|++||||+.|++||+++|..+.
T Consensus       175 GDSGgPL~~~------~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~  225 (231)
T 2aiq_A          175 GDSGGPLICN------GQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNT  225 (231)
T ss_dssp             TCTTCEEEET------TEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHTCS
T ss_pred             CcCCCcEEEC------CEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcCCC
Confidence            9999999982      2799999999 789877889999999999999999997543

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=3.5e-46  Score=350.59  Aligned_cols=222  Identities=32%  Similarity=0.499  Sum_probs=185.5

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+....+                                                       
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~-------------------------------------------------------   25 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTSNG-------------------------------------------------------   25 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECSSS-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCC-------------------------------------------------------
Confidence            6899999999999999998654221                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+.    ..+.|++|.+ ........ ....|.++++||+|+.  ....|||||
T Consensus        26 ------~~~~CgGtLI~~~~VLTAAhC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~DIAL   92 (226)
T 4ag1_A           26 ------PSKFCGGFLIRRNFVLTAAHCAG----RSITVTLGAH-NITEEEDTWQKLEVIKQFRHPKYNT--STLHHDIML   92 (226)
T ss_dssp             ------SCEEEEEEEEETTEEEECGGGCC----SEEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEE
T ss_pred             ------cccEEEEEEEeCCEEEECcccCC----CCeEEEeCCc-ccCCCCCcceEEEEEEEEeCCCCCC--CCCcCcEEE
Confidence                  36889999999999999999984    4688999987 33333333 3345999999999988  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeC
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM  428 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~  428 (525)
                      |||++|+.|++.++|+|||....  ..+..++++|||.+.... ..+..|++..+++++.+.|........+.+||++..
T Consensus        93 l~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~  171 (226)
T 4ag1_A           93 LKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLK-PGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNP  171 (226)
T ss_dssp             EEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEEECGGGGTTSTTCCTTTEEEESCT
T ss_pred             EEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCC-CCCCEeEEEEEEEcChHHcccccCcCccceEeeccC
Confidence            99999999999999999997654  568899999999886654 467889999999999999985544457889999876


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .++.+.|.|||||||++      +++|+||+|||..|+..  |++||+|+.|++||+++|+.
T Consensus       172 ~~~~~~C~GDsGgPl~~------~~~l~Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i~~  225 (226)
T 4ag1_A          172 RKTKSAFKGDSGGPLLC------AGVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQA  225 (226)
T ss_dssp             TSCCBCCTTCTTCEEEE------TTEEEEEEEECBTTCCS--CEEEEEHHHHHHHHHHHHHH
T ss_pred             CCCCcCccCCCCCceEE------cCEEEEEEEECCCCCCC--CCEEEEhHHHHHHHHHHHhc
Confidence            67889999999999998      45899999999988744  99999999999999999864

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=1.1e-46  Score=353.54  Aligned_cols=199  Identities=30%  Similarity=0.522  Sum_probs=169.1

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.+ +...... .....|.++++||+|+.  ....||||||||++|+
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~~--~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DiALl~L~~~~   97 (226)
T 1azz_A           23 MYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAH-NIREDEATQVTIQSTDFTVHENYNS--FVISNDIAVIRLPVPV   97 (226)
T ss_dssp             TEEEEEEEEETTEEEECHHHHTT--CSCEEEEESCS-BSSSCCTTCEEEEECCEEECTTCBT--TTTBSCCEEEECSSCC
T ss_pred             cEEEEEEEecCCEEEEhHHhcCC--CCceEEEEcce-EcCCCCCccEEEEEEEEEECCCCCC--CCCCCceEEEEECCcc
Confidence            58999999999999999999975  45688999987 3333222 23344999999999987  6778999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcC
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~g  437 (525)
                      .|+++++|||||......+..++++|||.+.......+..|++..+++++.+.|+..+..+.+.|||++. .++.+.|.|
T Consensus        98 ~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~Ca~~-~~~~~~C~G  176 (226)
T 1azz_A           98 TLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDS-TGGKGTCNG  176 (226)
T ss_dssp             CCCSSSCCCBCCSSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSCCCTTEEEECC-TTTCBCCTT
T ss_pred             ccCCCcccccCCCCCCCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhCcCCCceEeecC-CCCCccCCC
Confidence            9999999999998777778899999999887644356778999999999999999887667789999985 457899999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ||||||++      +++|+||+|||.  .|. .+.|++||||+.|++||++++..
T Consensus       177 DSGgPL~~------~~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~~~~~  224 (226)
T 1azz_A          177 DSGGPLNY------NGLTYGITSFGAAAGCE-AGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CTTCEEEE------TTEEEEEEEEEETTCTT-SCCCEEEEESGGGHHHHHHHHCC
T ss_pred             CCCcceEE------CCEEEEEEEEECCCCCC-CCCCCEEEEHHHHHHHHHHHhCC
Confidence            99999985      348999999996  676 57899999999999999998854

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=1.6e-46  Score=371.25  Aligned_cols=235  Identities=28%  Similarity=0.431  Sum_probs=188.5

Q ss_pred             ccccCCC-----CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccch
Q psy3170         182 TQCDILA-----MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR  256 (525)
Q Consensus       182 ~~Cg~~~-----~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~  256 (525)
                      ..||...     ..||+||.+|..++|||+|+|..                                             
T Consensus        75 ~~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~---------------------------------------------  109 (329)
T 1md8_A           75 PVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI---------------------------------------------  109 (329)
T ss_dssp             ECCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEES---------------------------------------------
T ss_pred             CCCCCCCCcccccccccCCEECCCCCCCCeEeecc---------------------------------------------
Confidence            4587643     46999999999999999998852                                             


Q ss_pred             hheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCC-----CCCceEEEEEEEeecccccccceEEEEEE
Q psy3170         257 TLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP-----LGKPRYVRFGLITKLSYSVTDNIHRVMQN  331 (525)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-----~~~~~~v~~g~~~~~~~~~~~~~~~v~~i  331 (525)
                                            .+.|+||||+++||||||||+...     ....+.|++|.+ +...........|+++
T Consensus       110 ----------------------~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~-~~~~~~~~~~~~V~~i  166 (329)
T 1md8_A          110 ----------------------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHT-NVEELMKLGNHPIRRV  166 (329)
T ss_dssp             ----------------------SSEEEEEEETTTEEEECGGGTSCTTC-----CCCCEEESCS-BHHHHHHHCCCCEEEE
T ss_pred             ----------------------CCCcceEEecCCEEEecCCEEEeCCcccCCCceEEEEeccc-cccccccccceeeEEE
Confidence                                  246999999999999999999742     234577899976 3322212223459999


Q ss_pred             EeCCCCCCC-CCCcccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeCh
Q psy3170         332 ILHPNYTTE-GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINN  408 (525)
Q Consensus       332 ~~hp~y~~~-~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~  408 (525)
                      ++||+|+.. .....||||||||++|+.|+++++|||||....  ..+..++++|||.+...   .+..|+++.+++++.
T Consensus       167 ~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~---~~~~L~~~~v~i~~~  243 (329)
T 1md8_A          167 SVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK---IAHDLRFVRLPVANP  243 (329)
T ss_dssp             EECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSS---BCSBCEEEEEEBCCH
T ss_pred             EECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCC---CCccceEEEEEEcCH
Confidence            999999862 125679999999999999999999999997654  45778999999987642   567899999999999


Q ss_pred             hhhhcccC------CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchh
Q psy3170         409 DTCSKQET------TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVP  482 (525)
Q Consensus       409 ~~C~~~~~------~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~  482 (525)
                      +.|...+.      .+.+.||||+...++.++|.|||||||++..+..++|+|+||+|||..|+.  .|++||||+.|++
T Consensus       244 ~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~C~~--~~gvyT~V~~y~~  321 (329)
T 1md8_A          244 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  321 (329)
T ss_dssp             HHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSSSSS--SCEEEEEGGGTHH
T ss_pred             HHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEEECCCcCC--CCcEEEEHHHHHH
Confidence            99987542      267889999876567899999999999986544459999999999999983  5899999999999


Q ss_pred             hhccccc
Q psy3170         483 WIVHTVW  489 (525)
Q Consensus       483 WI~~~i~  489 (525)
                      ||+++|.
T Consensus       322 WI~~~i~  328 (329)
T 1md8_A          322 WIKKEME  328 (329)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999874

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=5.2e-46  Score=351.41  Aligned_cols=200  Identities=34%  Similarity=0.552  Sum_probs=168.7

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceE-EEEEEEeCCCCCCC---------CCCcccceE
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIH-RVMQNILHPNYTTE---------GTSQYHDIA  349 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~-~v~~i~~hp~y~~~---------~~~~~~DIA  349 (525)
                      ++|+||||+++||||||||+.    ..+.|++|.. .........+. .|.++++||+|+..         .....||||
T Consensus        22 ~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIA   96 (235)
T 1ton_A           22 YLCGGVLIDPSWVITAAHCYS----NNYQVLLGRN-NLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLM   96 (235)
T ss_dssp             SEEEEEEEETTEEEECGGGCC----SCCEEEESCS-BTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCE
T ss_pred             CeEEEEEecCCEEEEcHHhCC----CCcEEEeCcc-cccCCCCcceEEEEEEEEeCCCCcccccccccccccCCCcCCEE
Confidence            679999999999999999994    4578999987 33322222344 49999999999751         135668999


Q ss_pred             EEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeC
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVM  428 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~  428 (525)
                      ||+|++|+.|+++++|||||......+..++++|||.+.......+..|+++.+++++.++|...+.. +.+.|||++..
T Consensus        97 Ll~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~  176 (235)
T 1ton_A           97 LLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEM  176 (235)
T ss_dssp             EEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGSTTGGGGEEEEECT
T ss_pred             EEEcCCccccCCcceeeeCCCCCCCCCCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhcCcCCCCeEeeccC
Confidence            99999999999999999999887778899999999988765435678899999999999999987754 67889999976


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .++.+.|.|||||||++      +.+|+||+||| ..|+.++.|++||+|+.|++||+++|..
T Consensus       177 ~~~~~~C~GDSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  233 (235)
T 1ton_A          177 EGGKDTCAGDSGGPLIC------DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE  233 (235)
T ss_dssp             TCSCBCCTTCTTCEEEE------TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccccEE------CCEEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHcc
Confidence            66789999999999998      23799999999 6798778999999999999999999864

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=5.8e-46  Score=349.50  Aligned_cols=199  Identities=27%  Similarity=0.553  Sum_probs=167.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.......+.|++|.. ....... .....|.++++||+|+.  ....||||||+|++|+
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DIAll~L~~~~   99 (228)
T 2xw9_A           23 AHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAH-SLSQPEPSKRLYDVLRAVPHPDSQP--DTIDHDLLLLQLSEKA   99 (228)
T ss_dssp             EEEEEEEEEETTEEEECGGGGSSCTTCCEEEEESCS-BSSSCCTTCEEEEEEEEEECTTCCT--TCCTTCCEEEEESSCC
T ss_pred             CeEEEEEEEeCCEEEEcHHhCCCCCCCceEEEEccc-ccCCCCCcceEEEEEEEEeCCCCCC--CCCCCcEEEEEeCCCc
Confidence            588999999999999999999765556789999987 3333222 23445999999999988  6778999999999999


Q ss_pred             ccCCCccceecCCCC--CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCCcEEEEeCCCCc
Q psy3170         358 EFSETLKPACLNRAH--NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGK  432 (525)
Q Consensus       358 ~~~~~v~picL~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~~~Ca~~~~~~~  432 (525)
                      .|+++++|+|||...  ...+..++++|||.+...+ ..+..|++..+++++.++|++.+.   .+.+.+||++.  .+.
T Consensus       100 ~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~--~~~  176 (228)
T 2xw9_A          100 TLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAG-RRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAES--NRR  176 (228)
T ss_dssp             CCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTC-CCCSBCEEEECCEECHHHHTSTTTTTTCCCTTEEEECC--SSC
T ss_pred             ccCCCeeecccCCcccCCCCCCEEEEEEecccCCCC-CCCchheEEEEEEcChhHhcCccccCCcccCCEEecCC--CCC
Confidence            999999999999753  3567889999999887554 457889999999999999988764   36788999974  567


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      +.|.|||||||++.      .+|+||+|||. .|+..+.|++||+|+.|++||+++|+
T Consensus       177 ~~C~GDsGgPL~~~------~~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          177 DSCKGDAGGPLVCG------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             BCCTTCTTCEEEET------TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             ccCCCCCcccEEEC------CEEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence            89999999999981      27999999997 89877889999999999999998863

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=3.8e-46  Score=354.34  Aligned_cols=206  Identities=30%  Similarity=0.494  Sum_probs=172.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCC--CCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITS--PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~--~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+..  .....+.|++|.. .... .......+.++++||+|+.. ....||||||||++|
T Consensus        21 ~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~v~~g~~-~~~~-~~~~~~~v~~i~~hp~y~~~-~~~~~DIALl~L~~~   97 (242)
T 3tvj_B           21 GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL-KRLS-PHYTQAWSEAVFIHEGYTHD-AGFDNDIALIKLNNK   97 (242)
T ss_dssp             SEEEEEEEETTTEEEECHHHHSTTTTCSSCCEEEESCS-BTTC-SCCEEEEEEEEEECTTCCTT-SCSTTCCEEEEESSC
T ss_pred             CCcEEEEEecCCEEEECHHHCCCCCCCcceEEEEeccc-cccC-cccceeeEEEEEeCCCCCCC-CCCcCcEEEEEECCc
Confidence            47899999999999999999976  3456788999876 2221 12234459999999999862 346799999999999


Q ss_pred             cccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-------CCCCcEEE
Q psy3170         357 VEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-------LISSQLCA  425 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-------~~~~~~Ca  425 (525)
                      +.|+++++|||||....    ..+..++++|||.+...  ..+..|++..+.+++.++|...+..       +.+.|||+
T Consensus        98 v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~~--~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca  175 (242)
T 3tvj_B           98 VVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG--FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA  175 (242)
T ss_dssp             CCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTTS--SCCSBCEEEEEEBCCHHHHHHHHHSTTSCTTCCCTTEEEE
T ss_pred             cccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCCC--CcCccceEEeeeEEcHHHHHHhhccCCcccccccCCeEEE
Confidence            99999999999998653    56788999999987642  4678899999999999999876532       67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      +...++.+.|.|||||||++.....++|+|+||+||| ..|+..+.|++||+|+.|++||+++|.
T Consensus       176 ~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~  240 (242)
T 3tvj_B          176 GLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS  240 (242)
T ss_dssp             SCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            8766778999999999999976545599999999999 899988899999999999999999874

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=6.9e-46  Score=351.54  Aligned_cols=227  Identities=27%  Similarity=0.454  Sum_probs=191.2

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.....                                                         
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---------------------------------------------------------   23 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSRS---------------------------------------------------------   23 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTT---------------------------------------------------------
T ss_pred             CCCCeeCCCCCcCcEEEEEECCC---------------------------------------------------------
Confidence            68999999999999999975321                                                         


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EE-EEEEEeCCCCCCCCCCcccceE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HR-VMQNILHPNYTTEGTSQYHDIA  349 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~-v~~i~~hp~y~~~~~~~~~DIA  349 (525)
                            ..++|+||||+++||||||||+.    ..+.|++|.. .......... .. +..+++||.|+.  ....||||
T Consensus        24 ------~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~-~~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~DIA   90 (238)
T 4e7n_A           24 ------RTLFCGGTLINQEWVLTAAHCDR----KNFRIKLGMH-SKKVPNEDEQTRVPKEKFFCLSSKNY--TLWDKDIM   90 (238)
T ss_dssp             ------CCEEEEEEECSSSEEEECGGGCC----SSCEEEESCS-CSSSCCTTCEEECEEEEECSSTTCCC--CSSSCCCE
T ss_pred             ------CCEEEEEEEecCCEEEEhHHcCC----CCCeEEecee-eccccCCCceeEeeeeeEEcCCCCCC--CCCCCcEE
Confidence                  25899999999999999999985    4578889877 3332222223 33 667778999988  67789999


Q ss_pred             EEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC----CCCCcEEE
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT----LISSQLCA  425 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~----~~~~~~Ca  425 (525)
                      ||+|++|+.|+++++|||||......+..++++|||.+.......+..|+...+.+++.+.|...+..    +.+.+||+
T Consensus        91 Ll~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca  170 (238)
T 4e7n_A           91 LIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCA  170 (238)
T ss_dssp             EEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGGCCCSCCSEEEE
T ss_pred             EEEeCCCccCCCceeeeeCCCCCCCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhcccccCCCCCCeEEe
Confidence            99999999999999999999988888999999999988765545678899999999999999987652    56889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccccccccC
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      +...++.+.|.|||||||++      +..|+||+|||.. |+..+.|++||+|+.|++||+++|.....+
T Consensus       171 ~~~~~~~~~C~GDSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~~~~  234 (238)
T 4e7n_A          171 GILEGGKDTCKGDSGGPLIC------NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNTDA  234 (238)
T ss_dssp             ECTTCSCBCCTTCTTCEEEE------TTEEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTCTTC
T ss_pred             CCCCCCCccCCCCCCcceEE------CCEEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcCCCC
Confidence            97777889999999999998      2359999999976 987789999999999999999999865443

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=1.1e-45  Score=349.32  Aligned_cols=202  Identities=27%  Similarity=0.483  Sum_probs=170.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEE-EEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~-v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.    ..+.+++|............... +..++.||.|+.  ....||||||+|++|+
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~DIALl~L~~~v   96 (234)
T 3s69_A           23 GFFCSGTLINEEWVLTAAHCDN----TNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKND--EVLDKDIMLIKLDSRV   96 (234)
T ss_dssp             CEEEEEEEEETTEEEECGGGCC----SSCEEEESCCCSSSCCTTCEEECEEEEEECTTCCTT--CTTSSCCEEEEESSCC
T ss_pred             CeEEeEEEeeCCEEEEchhhCC----CCceEEecccccccccCCcceeeceEEEECCCccCC--CCCcccEEEEeeCCcC
Confidence            5899999999999999999984    45788898773222222223333 667777999988  6788999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCCcCCC
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKDTC  435 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~~~~C  435 (525)
                      .|+++++|||||......+..++++|||.+.......+..|+...+.+++.+.|...+..  ....+||++...++.+.|
T Consensus        97 ~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C  176 (234)
T 3s69_A           97 SNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTC  176 (234)
T ss_dssp             CCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCCTTSCEEEEECTTCSCBCC
T ss_pred             CCCCcceeeecCCCCCCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhcccccCCcceEeccCCCCCCccC
Confidence            999999999999988878999999999988765545678899999999999999988753  567899999777788999


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      .|||||||++      +..|+||+|||.. |+..+.|++||||+.|++||+++|....
T Consensus       177 ~GDSGgPL~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~~  228 (234)
T 3s69_A          177 GGDSGGPLIC------NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGNT  228 (234)
T ss_dssp             TTCTTCEEEE------TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTCT
T ss_pred             CCCCccceEE------cCEEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCCc
Confidence            9999999998      2359999999975 9877889999999999999999997643

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1.6e-46  Score=356.72  Aligned_cols=206  Identities=27%  Similarity=0.408  Sum_probs=166.0

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCC-----CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCC-CCCcccceEEEEE
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSP-----LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE-GTSQYHDIALLKI  353 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~-----~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~~DIAll~L  353 (525)
                      +.|+||||+++||||||||+...     ....+.|++|.. +...........|+++++||+|+.. .....||||||||
T Consensus        22 ~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L  100 (242)
T 2qy0_B           22 GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHT-NVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL  100 (242)
T ss_dssp             SEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCS-BHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEE
T ss_pred             CCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeec-cccccccccceeEEEEEECCCCccCcCCCCCCcEEEEEE
Confidence            46999999999999999998642     234678899876 3322222234459999999999862 1256799999999


Q ss_pred             CCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC------CCCCCcEEE
Q psy3170         354 APPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET------TLISSQLCA  425 (525)
Q Consensus       354 ~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~------~~~~~~~Ca  425 (525)
                      ++|+.|+++++|||||....  ..+..++++|||.+...   .+..|+++.+++++.+.|...+.      .+.+.|||+
T Consensus       101 ~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~---~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca  177 (242)
T 2qy0_B          101 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK---IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCA  177 (242)
T ss_dssp             SSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS---CCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEE
T ss_pred             CCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCc---CCccceEEEEEEeCHHHHHHHhccccccccCCCCEEec
Confidence            99999999999999997654  46788999999987642   56789999999999999987542      256889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      +...++.+.|.|||||||++..+..++|+|+||+|||..|+.  .|++||+|+.|++||+++|..+
T Consensus       178 ~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~WI~~~~~~~  241 (242)
T 2qy0_B          178 GHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEMEEE  241 (242)
T ss_dssp             SCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHHHHHHHTTC-
T ss_pred             cCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCC--CCcEEEEHHHHHHHHHHHhhcc
Confidence            876567899999999999997544458999999999999983  4899999999999999999753

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=4e-46  Score=357.86  Aligned_cols=211  Identities=29%  Similarity=0.488  Sum_probs=171.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCC------CCCCceEEEEEEEeecccccccceEE-EEEEEeCCCCCCCCCCcccceEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITS------PLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~------~~~~~~~v~~g~~~~~~~~~~~~~~~-v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                      .++|+||||+++||||||||+..      .....+.|++|.+............. |+++++||+|+.. ....||||||
T Consensus        25 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~DIALl  103 (259)
T 3rm2_H           25 ELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR-ENLDRDIALM  103 (259)
T ss_dssp             EEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECTTCBTT-TTCBTCCEEE
T ss_pred             ceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeEEEEEEECCCCCCC-CCCCCcEEEE
Confidence            58999999999999999999952      13456789999873322222333444 9999999999832 4677999999


Q ss_pred             EECCCcccCCCccceecCCCCC-----CCCCcEEEEEeeeccCCCC-----cccccceEEEEEeeChhhhhcccCC-CCC
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN-----VKSPTAIASGFGKLNYFDT-----KESLRLMKVVLDIINNDTCSKQETT-LIS  420 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~-----~~~~~~~~~Gwg~~~~~~~-----~~~~~l~~~~v~~~~~~~C~~~~~~-~~~  420 (525)
                      +|++|+.|+++++|||||....     ..+..++++|||.+.....     ..+..|+++.+++++...|...+.. +.+
T Consensus       104 ~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  183 (259)
T 3rm2_H          104 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITD  183 (259)
T ss_dssp             EESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBCEEEEEEBCCHHHHHHTCSSCCCT
T ss_pred             EeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccceEEEEEEeCHHHhhhhhcccCCC
Confidence            9999999999999999997543     4578999999998764321     1267899999999999999988754 678


Q ss_pred             CcEEEEeCC---CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         421 SQLCATVMA---GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       421 ~~~Ca~~~~---~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .|||++...   ...+.|.|||||||++.....++|+|+||+|||.+|+..+.|++||+|+.|++||+++|..
T Consensus       184 ~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~~  256 (259)
T 3rm2_H          184 NMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQ  256 (259)
T ss_dssp             TEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHHHHH
T ss_pred             ceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHHH
Confidence            999997532   2358999999999999874344999999999999999888999999999999999999864

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=8e-46  Score=347.73  Aligned_cols=221  Identities=33%  Similarity=0.498  Sum_probs=186.7

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+....                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTEK--------------------------------------------------------   24 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEecCC--------------------------------------------------------
Confidence            689999999999999999875422                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                           +..++|+||||+++||||||||+.    ..+.|++|.. ........ ....|.++++||+|+.  ....|||||
T Consensus        25 -----~~~~~CgGtLI~~~~VLTAAhC~~----~~~~v~~g~~-~~~~~~~~~~~~~v~~~~~hp~y~~--~~~~~DIAL   92 (224)
T 3rp2_A           25 -----GLRVICGGFLISRQFVLTAAHCKG----REITVILGAH-DVRKRESTQQKIKVEKQIIHESYNS--VPNLHDIML   92 (224)
T ss_dssp             -----SCEEEEEEEESSSSEEEECGGGCC----SEEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCCS--SSCCSCCEE
T ss_pred             -----CcEEEEEeEEeeCCEEEEchhcCC----CCcEEEEecc-ccCcCCCCcEEEEEEEEEECCCccC--CCCCccEEE
Confidence                 136899999999999999999983    4688999987 33333333 3445999999999988  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeC
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM  428 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~  428 (525)
                      |||++|+.|++.++|+|||....  ..+..++++|||.+.... ..+..|++..+.+++.+.|..........++|++..
T Consensus        93 l~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~Ca~~~  171 (224)
T 3rp2_A           93 LKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD-PTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSP  171 (224)
T ss_dssp             EEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTE-EECSBCEEEEEEEECGGGTTTTTCCCTTTEEEECCT
T ss_pred             EEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCC-CCCceeeEeeeeecChHHhccccccCcCCEEEecCC
Confidence            99999999999999999997765  567899999999886554 567789999999999999987444456889999877


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ..+.+.|.|||||||++      +++|+||+|||..|+..  |++||+|+.|++||+++|+
T Consensus       172 ~~~~~~C~GDsGgPl~~------~~~l~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          172 TTLRAAFMGDSGGPLLC------AGVAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TSCCBCCTTTTTCEEEE------TTEEEEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCeeccCCCCCeEEE------cceeeEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence            77789999999999998      45899999999988743  9999999999999999873

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=1.5e-45  Score=348.21  Aligned_cols=201  Identities=27%  Similarity=0.439  Sum_probs=170.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EE-EEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HR-VMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~-v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.    ....|++|.. .......... .. +..+++||.|+.  ....||||||+|++|
T Consensus        25 ~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~-~~~~~~~~~~~~~~~~~~~~h~~~~~--~~~~~DIALl~L~~~   97 (234)
T 3s9c_A           25 TIHCAGALINREWVLTAAHCDR----RNIRIKLGMH-SKNIRNEDEQIRVPRGKYFCLNTKFP--NGLDKDIMLIRLRRP   97 (234)
T ss_dssp             EEEEEEEEEETTEEEECGGGCC----TTEEEEESCS-SSSSCCTTCEEECEEEEECCSSCSST--TCGGGCCEEEEESSC
T ss_pred             cEEEeeEEeeCCEEEEchhhcC----CCceEEEeec-ccccccCCcceEEeeeEEEeCCCCCC--CCCcCceEEEEECCc
Confidence            6889999999999999999985    4578899987 3332222222 23 666777999988  678899999999999


Q ss_pred             cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCCcCC
Q psy3170         357 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKDT  434 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~~~~  434 (525)
                      +.|+++++|||||......+..++++|||.+...  ..+..|+...+.+++.+.|...+..  +.+.+||++...++.+.
T Consensus        98 v~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~  175 (234)
T 3s9c_A           98 VTYSTHIAPVSLPSRSRGVGSRCRIMGWGKISTT--TYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDT  175 (234)
T ss_dssp             CCCBTTBCCCBCCSSCCCTTCEEEEEESSCSBTT--BCCSSCEEEEEEEECGGGTTTTCTTSCTTSSEEEEECTTSSCBC
T ss_pred             cccCCcccccccCCCCCCCCCeEEEEeeCCCCCC--CCCccccccceEecCHHHhhhcccCCCCCcceEEeecCCCCCcc
Confidence            9999999999999888878999999999987654  4677899999999999999988763  67889999977778899


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccccccccC
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      |.|||||||++      +..|+||+|||.. |+..+.|++||+|+.|++||+++|..+...
T Consensus       176 C~GDSGgPl~~------~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~~~  230 (234)
T 3s9c_A          176 CHGDSGGPLIC------NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGNRTV  230 (234)
T ss_dssp             CTTCTTCEEEE------TTEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTCSSC
T ss_pred             CCCCCCCeEEE------eCCcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCCCee
Confidence            99999999998      2359999999976 987788999999999999999999776443

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=2.4e-45  Score=347.86  Aligned_cols=208  Identities=28%  Similarity=0.483  Sum_probs=170.5

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccc---cccceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYS---VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~---~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      .++|+||||+++||||||||+.......+.|++|.+ .....   .......|.+++.||.        .||||||+|++
T Consensus        22 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~~~v~~~~~~p~--------~~DiALl~L~~   92 (240)
T 1si5_H           22 KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIH-DVHGRGDEKCKQVLNVSQLVYGPE--------GSDLVLMKLAR   92 (240)
T ss_dssp             SEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCS-BSSCSTTTTTCEEEEEEEEEECSS--------TTCEEEEEESS
T ss_pred             CeEEEEEEeeCCEEEEhHHhcCCCCCccEEEEEeee-ecCCCCCCCcceEEEEEEEEcCCC--------CCcEEEEEECC
Confidence            588999999999999999999775556788999987 33222   1223344899999985        37999999999


Q ss_pred             CcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEEEeCCC
Q psy3170         356 PVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCATVMAG  430 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca~~~~~  430 (525)
                      |+.|+++++|||||....  ..+..++++|||.+....  .+..|++..+++++.+.|...+..   +.+.+||++...+
T Consensus        93 ~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~  170 (240)
T 1si5_H           93 PAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN--YDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKI  170 (240)
T ss_dssp             CCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS--CCCBCEEEEEEEECGGGTCC-------CCTTEEEEECSSS
T ss_pred             ccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCC--CCCeeEEEEEeecCHHHhhhhhcCCccCCCCEEeecCCCC
Confidence            999999999999997543  467899999999886543  567899999999999999887643   6788999997666


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccCCCchh
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLT  499 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~~~~~~  499 (525)
                      +.+.|.|||||||++..++  +|+|+||+|||.+|+..+.|++||+|+.|++||+++|.....+.+..+
T Consensus       171 ~~~~C~GDSGgPL~~~~~~--~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~~~~~~~~  237 (240)
T 1si5_H          171 GSGPCEGDYGGPLVCEQHK--MRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQSHHH  237 (240)
T ss_dssp             CCBCCTTCTTCEEEEECSS--SEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSCCCCCC---
T ss_pred             CCEeccCCCCCcEEEEECC--cEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhccCccccccc
Confidence            7899999999999997654  899999999999998778899999999999999999987766666543

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=383.90  Aligned_cols=238  Identities=28%  Similarity=0.452  Sum_probs=192.8

Q ss_pred             CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceee
Q psy3170         189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF  268 (525)
Q Consensus       189 ~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (525)
                      ..||+||.+|..++|||+|+|+....                                                      
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~------------------------------------------------------  188 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSP------------------------------------------------------  188 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTT------------------------------------------------------
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCC------------------------------------------------------
Confidence            46999999999999999999965321                                                      


Q ss_pred             eecCCccccceeEeEEEEEeCCEEEecCCCCCC------CCCCceEEEEEEEeecccccccceEE-EEEEEeCCCCCCCC
Q psy3170         269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS------PLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTTEG  341 (525)
Q Consensus       269 ~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~------~~~~~~~v~~g~~~~~~~~~~~~~~~-v~~i~~hp~y~~~~  341 (525)
                               ..++|+||||+++||||||||+..      .....+.|++|.+..........+.. |+++++||+|+.. 
T Consensus       189 ---------~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~-  258 (424)
T 3nxp_A          189 ---------QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR-  258 (424)
T ss_dssp             ---------TEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEECEEEEEECTTCBTT-
T ss_pred             ---------CCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCCCceeEEEEEEEEeCCCCCCC-
Confidence                     268999999999999999999852      23456889999883322222233444 9999999999832 


Q ss_pred             CCcccceEEEEECCCcccCCCccceecCCCCC-----CCCCcEEEEEeeeccCC-----CCcccccceEEEEEeeChhhh
Q psy3170         342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHN-----VKSPTAIASGFGKLNYF-----DTKESLRLMKVVLDIINNDTC  411 (525)
Q Consensus       342 ~~~~~DIAll~L~~~~~~~~~v~picL~~~~~-----~~~~~~~~~Gwg~~~~~-----~~~~~~~l~~~~v~~~~~~~C  411 (525)
                      ....||||||+|++|+.|+++|+|||||....     ..+..++++|||.+...     +...+..|+++.+.+++...|
T Consensus       259 ~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~~~~~L~~~~v~ii~~~~C  338 (424)
T 3nxp_A          259 ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC  338 (424)
T ss_dssp             TTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----CCSBCEEEEEEBCCHHHH
T ss_pred             CCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccCCCCCccceEEEeeEEcHHHh
Confidence            46779999999999999999999999997543     35788999999976431     112367899999999999999


Q ss_pred             hcccCC-CCCCcEEEEeCC---CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         412 SKQETT-LISSQLCATVMA---GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       412 ~~~~~~-~~~~~~Ca~~~~---~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      ...+.. +.+.||||+...   .+.++|.|||||||++.....++|+|+||+|||.+|+..+.|+|||+|+.|++||+++
T Consensus       339 ~~~~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~~~pgVyT~Vs~y~~WI~~~  418 (424)
T 3nxp_A          339 KDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKV  418 (424)
T ss_dssp             HHTCSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSCTTTCCSCEEEEECTTCHHHHHHH
T ss_pred             hhhccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            987754 778999998542   2458999999999999864334899999999999999888999999999999999999


Q ss_pred             ccc
Q psy3170         488 VWP  490 (525)
Q Consensus       488 i~~  490 (525)
                      |..
T Consensus       419 i~~  421 (424)
T 3nxp_A          419 IDQ  421 (424)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=6.9e-46  Score=350.92  Aligned_cols=203  Identities=22%  Similarity=0.382  Sum_probs=173.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.......+.|++|.. ...  .......|.++++| .|+.  ....||||||+|++|+.
T Consensus        23 ~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~--~~~~~~~v~~i~~h-~y~~--~~~~~DiAll~L~~~v~   96 (235)
T 3h7t_A           23 KPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSS-YRT--TKGTSVMAKKIYIV-RYHP--LTMQNNYAVIETEMPIK   96 (235)
T ss_dssp             SCCEEEEESSSSEEEECHHHHTTCCGGGEEEEESCS-BSS--SSSEEEEEEEEEEC-SCBT--TTTBTCCEEEEESSCCC
T ss_pred             CceEeEEEeeCCEEEECHHHCCCCCCCeeEEEcCcc-ccc--cCCceeeeeeEEee-ecCC--CCCCCCeEEEEeccccc
Confidence            478999999999999999999766667889999977 222  22344559999999 9988  67889999999999999


Q ss_pred             cCC-CccceecCCCC--CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC------CCCCcEEEEeCC
Q psy3170         359 FSE-TLKPACLNRAH--NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT------LISSQLCATVMA  429 (525)
Q Consensus       359 ~~~-~v~picL~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~------~~~~~~Ca~~~~  429 (525)
                      |++ .++|||||...  ...+..++++|||.+.......+..|+++.+++++.+.|...+..      +.+.|||++...
T Consensus        97 ~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~  176 (235)
T 3h7t_A           97 LDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEY  176 (235)
T ss_dssp             CCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHTTTCGGGCSTTEEEECBTT
T ss_pred             cCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhhcccCccccCCeEecCCCC
Confidence            999 99999999876  567889999999998765545678899999999999999887643      678899999876


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccC
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      ++.+.|.|||||||++  +    ..|+||+|||..|+. +.|++||+|++|++||+++|.....|
T Consensus       177 ~~~~~C~GDsGgPl~~--~----~~l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i~~~~~p  234 (235)
T 3h7t_A          177 DETYIGYGDAGDPAVQ--N----GTLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIISGKVKP  234 (235)
T ss_dssp             TTBBCCTTCTTCEEEE--T----TEEEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHHTTCSCC
T ss_pred             CCCccccCCCCCceee--C----CeEEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHHhCCccC
Confidence            6889999999999998  2    249999999999986 88999999999999999999776544

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=9.2e-46  Score=350.87  Aligned_cols=203  Identities=29%  Similarity=0.511  Sum_probs=168.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc---ceEEEEEEEeCCCCCCCCCCcc--cceEEEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD---NIHRVMQNILHPNYTTEGTSQY--HDIALLKI  353 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~---~~~~v~~i~~hp~y~~~~~~~~--~DIAll~L  353 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.. ........   ....|.++++||+|+.  ....  ||||||+|
T Consensus        25 ~~~CgGtLIs~~~VLTAAhC~~~--~~~~~v~~G~~-~~~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~~~DIALl~L   99 (240)
T 1fon_A           25 HHTCGGSLIAPDWVVTAGHCIST--SRTYQVVLGEY-DRSVLEGSEQVIPINAGDLFVHPLWNS--NCVACGNDIALVKL   99 (240)
T ss_dssp             EEEECCEEEETTEEEECGGGCCT--TSCEEEEEEEE-ETTEEEEEEEEEEECTTSEEECTTCCT--TCGGGCCCCEEEEC
T ss_pred             eeEEEEEEeeCCEEEECHHHCCC--CCceEEEeeee-eccccCCCceeEeeeeeEEEECCCCcC--CCccCCCCEEEEEe
Confidence            58999999999999999999976  36788999988 33322212   2233889999999988  5566  99999999


Q ss_pred             CCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC---CCCCCcEEEEeC
Q psy3170         354 APPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVM  428 (525)
Q Consensus       354 ~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~---~~~~~~~Ca~~~  428 (525)
                      ++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.+.|.+.+.   .+.+.|||++. 
T Consensus       100 ~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~-  177 (240)
T 1fon_A          100 SRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGG-PLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGG-  177 (240)
T ss_dssp             SSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSS-SCCSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECC-
T ss_pred             cCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCC-CCChhheEEEEeeeCHHHhccceecCCccccceEeecC-
Confidence            99999999999999997653  467889999999876544 467789999999999999987532   26788999984 


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      . +.+.|.|||||||++...++ +|+|+||+||+.  .|+..+.|++||+|+.|++||+++|..
T Consensus       178 ~-~~~~C~GDsGgPL~~~~~~~-~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  239 (240)
T 1fon_A          178 D-TRSGCNGDSGGPLNCPAADG-SWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIAS  239 (240)
T ss_dssp             S-SSCSTTSCTTCEEEEECSSS-CEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred             C-CCcccCCCCCCeEEeEcCCC-CEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHHHHhc
Confidence            2 38899999999999976332 899999999996  898778899999999999999998853

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=7.8e-46  Score=368.15  Aligned_cols=235  Identities=29%  Similarity=0.526  Sum_probs=184.9

Q ss_pred             ccccCCCC-----CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccch
Q psy3170         182 TQCDILAM-----PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR  256 (525)
Q Consensus       182 ~~Cg~~~~-----~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~  256 (525)
                      ..||....     .||+||.+|..++|||+|+|.                                              
T Consensus        68 ~~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~----------------------------------------------  101 (333)
T 1elv_A           68 PVCGVPREPFEEKQRIIGGSDADIKNFPWQVFFD----------------------------------------------  101 (333)
T ss_dssp             ECCSCCSSCC-----CBTCEECCGGGSTTEEEEE----------------------------------------------
T ss_pred             CCcCCCCCcccccceeecCcccCCCCcCeEEEec----------------------------------------------
Confidence            36887543     599999999999999999983                                              


Q ss_pred             hheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEE---EEEEe
Q psy3170         257 TLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRV---MQNIL  333 (525)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v---~~i~~  333 (525)
                                            ..+|+||||+++||||||||+...  ....|++|.+ .... .......|   +++++
T Consensus       102 ----------------------~~~CgGsLIs~~~VLTAAHC~~~~--~~~~v~~G~~-~~~~-~~~~~~~v~~v~~i~~  155 (333)
T 1elv_A          102 ----------------------NPWAGGALINEYWVLTAAHVVEGN--REPTMYVGST-SVQT-SRLAKSKMLTPEHVFI  155 (333)
T ss_dssp             ----------------------TTEEEEEEEETTEEEECHHHHTTC--SSCCEECSCS-BCC--------CEECEEEEEE
T ss_pred             ----------------------CCceeEEEecCCEEEehhheeCCC--CCCeEEEeee-eccc-CccceeeeeccceEEE
Confidence                                  126999999999999999999763  3347888876 3211 11122225   99999


Q ss_pred             CCCCCCC-----CCCcccceEEEEECCCcccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEE
Q psy3170         334 HPNYTTE-----GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLD  404 (525)
Q Consensus       334 hp~y~~~-----~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~  404 (525)
                      ||+|+..     .....||||||||++|+.|+++++|||||....    ..+..++++|||.+...  ..+..|+++.++
T Consensus       156 Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~~--~~~~~L~~~~v~  233 (333)
T 1elv_A          156 HPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKR--DRAVRLKAARLP  233 (333)
T ss_dssp             CTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSC--SSCSBCEEEEEE
T ss_pred             CCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcCcCCC--CcCceeEEEEEE
Confidence            9999831     145679999999999999999999999997653    35788999999987653  356789999999


Q ss_pred             eeChhhhhcccC----------CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCc-eeEEEEEEeecCCCCCCCCceE
Q psy3170         405 IINNDTCSKQET----------TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC-MYNIIGITSYGRQCGHANTPAI  473 (525)
Q Consensus       405 ~~~~~~C~~~~~----------~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~-~~~l~GI~S~g~~c~~~~~p~v  473 (525)
                      +++.+.|.+.+.          .+.+.||||+... +.++|.|||||||++...+.+ +|+|+||+|||..|+.   |++
T Consensus       234 v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS~g~~C~~---~~v  309 (333)
T 1elv_A          234 VAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGL  309 (333)
T ss_dssp             EECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTTS---EEE
T ss_pred             EEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECCCCcEEEEEEEEeeCCCCCC---CcE
Confidence            999999987653          2678899998754 789999999999999764433 8999999999999973   899


Q ss_pred             EEEcCCchhhhcccccccccC
Q psy3170         474 YTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       474 ~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      ||+|+.|++||+++|.....|
T Consensus       310 yt~V~~y~~WI~~~~~~~~~p  330 (333)
T 1elv_A          310 YTRVKNYVDWIMKTMQENSTP  330 (333)
T ss_dssp             EEEGGGGHHHHHHHHHHTC--
T ss_pred             EeEHHHHHHHHHHHHhccCCC
Confidence            999999999999999765444

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.2e-45  Score=344.76  Aligned_cols=200  Identities=25%  Similarity=0.447  Sum_probs=167.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC--CCCceEEEEEEEeecccc---cccceEEEEEEEeCCCCCCCCCCcccceEEEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP--LGKPRYVRFGLITKLSYS---VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI  353 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~---~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L  353 (525)
                      .++|+||||+++||||||||+...  ....+.|++|.. .....   .......|.++++||.        .+|||||+|
T Consensus        21 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~~~v~~i~~hp~--------~~DiALl~L   91 (234)
T 2asu_B           21 QHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTL-FQNPQHGEPSLQRVPVAKMVCGPS--------GSQLVLLKL   91 (234)
T ss_dssp             CEEEEEEEEETTEEEEEGGGSSCTTCCCTTCEEEESCS-BSSCCTTCTTCEEEEEEEEEECST--------TCCEEEEEE
T ss_pred             CEEEEEEEEeCCEEEECHHHcCCCCCCcccEEEEEeee-eccCCCCCCceEEEEEEEEecCCC--------CCCeEEEEe
Confidence            589999999999999999999653  346788999987 33222   1223344999999996        279999999


Q ss_pred             CCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCC
Q psy3170         354 APPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAG  430 (525)
Q Consensus       354 ~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~  430 (525)
                      ++|+.|+++++|||||....  ..+..++++|||.+....  .+..|++..+++++.++|...+.. +.+.+||++...+
T Consensus        92 ~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~Ca~~~~~  169 (234)
T 2asu_B           92 ERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG--NDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLA  169 (234)
T ss_dssp             SSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSS--CTTBCEEEEEEEECHHHHHHHTTTCCCTTEEEECCCSS
T ss_pred             CCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCC--CCccceEEEeeEEcHHHcccccCCccCcceEeecCCCC
Confidence            99999999999999997653  467899999999886544  467899999999999999887643 6789999987666


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      +.+.|.|||||||++..++  +|+|+||+|||..|+..+.|++||||+.|++||++++...
T Consensus       170 ~~~~C~GDSGgPL~~~~~~--~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  228 (234)
T 2asu_B          170 PVGACEGDYGGPLACFTHN--SWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLG  228 (234)
T ss_dssp             CCBCCTTCTTCEEEEEETT--EEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC---
T ss_pred             CCeeccCCCCCceEEEECC--eEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhhcc
Confidence            7899999999999997655  8999999999999997789999999999999999999653

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=1.8e-45  Score=375.40  Aligned_cols=236  Identities=31%  Similarity=0.502  Sum_probs=195.8

Q ss_pred             ccccCCC---CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhh
Q psy3170         182 TQCDILA---MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTL  258 (525)
Q Consensus       182 ~~Cg~~~---~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~  258 (525)
                      ..||...   ..||+||.+|..++|||+|+|..                                               
T Consensus       149 ~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~-----------------------------------------------  181 (403)
T 1zjk_A          149 PVCGLSARTTGGQIYGGQKAKPGDFPWQVLILG-----------------------------------------------  181 (403)
T ss_dssp             ECCCCCSSCCSCCCSSCEECCTTSSTTEEEEEE-----------------------------------------------
T ss_pred             CCCCCCCCCCCccccCCcCCCCCCcCCEeEecc-----------------------------------------------
Confidence            4688765   36999999999999999999963                                               


Q ss_pred             eeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCC--CCCceEEEEEEEeecccccccceEEEEEEEeCCC
Q psy3170         259 LFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN  336 (525)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~  336 (525)
                                          .++|+||||+++||||||||+...  ....+.|++|.+ .. .........|+++++||+
T Consensus       182 --------------------~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~V~~G~~-~~-~~~~~~~~~v~~i~~Hp~  239 (403)
T 1zjk_A          182 --------------------GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL-KR-LSPHYTQAWSEAVFIHEG  239 (403)
T ss_dssp             --------------------SCCEEEEEETTTEEEECHHHHGGGTTCSTTEEEEESCS-BT-TCSCCEEEEEEEEEECTT
T ss_pred             --------------------CCceEEEEecCCEEEEcHHhCCCCCCCcceEEEEcccc-cc-CCCCceEEeEEEEEECCC
Confidence                                256999999999999999999653  246688999987 21 122233445999999999


Q ss_pred             CCCCCC-CcccceEEEEECCCcccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhh
Q psy3170         337 YTTEGT-SQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTC  411 (525)
Q Consensus       337 y~~~~~-~~~~DIAll~L~~~~~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C  411 (525)
                      |+.  . ...||||||||++|+.|+++++|||||....    ..+..++++|||.+...  ..+..|+++.+++++.++|
T Consensus       240 y~~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~--~~~~~L~~~~v~v~~~~~C  315 (403)
T 1zjk_A          240 YTH--DAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG--FLARNLMYVDIPIVDHQKC  315 (403)
T ss_dssp             CCT--TSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS--CCCSBCEEEEEEEECHHHH
T ss_pred             CCC--CCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCC--ccCcccEEEEEeEeCHHHH
Confidence            987  4 6779999999999999999999999997653    45788999999987653  4577899999999999999


Q ss_pred             hcccC-------CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhh
Q psy3170         412 SKQET-------TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPW  483 (525)
Q Consensus       412 ~~~~~-------~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~W  483 (525)
                      +..+.       .+.+.||||+...++.++|.|||||||++.....++|+|+||+||| ..|+..+.|++||||+.|++|
T Consensus       316 ~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~~W  395 (403)
T 1zjk_A          316 TAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPW  395 (403)
T ss_dssp             HHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEEEEGGGGHHH
T ss_pred             hhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHH
Confidence            87664       3678899998766678999999999999975444499999999999 799877889999999999999


Q ss_pred             hcccccc
Q psy3170         484 IVHTVWP  490 (525)
Q Consensus       484 I~~~i~~  490 (525)
                      |+++|..
T Consensus       396 I~~~i~~  402 (403)
T 1zjk_A          396 IENIISD  402 (403)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            9998853

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=1.5e-45  Score=393.48  Aligned_cols=240  Identities=31%  Similarity=0.603  Sum_probs=186.4

Q ss_pred             ccccCCCCCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheee
Q psy3170         182 TQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFI  261 (525)
Q Consensus       182 ~~Cg~~~~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~  261 (525)
                      ..||....+||+||.++..++|||+|+|.+....                                              
T Consensus       378 ~~Cg~~~~~rIvgG~~a~~~~~Pw~v~L~~~~~~----------------------------------------------  411 (625)
T 2f83_A          378 NECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPT----------------------------------------------  411 (625)
T ss_dssp             CSSCSCCCSCCCSSSSCCTTSSTTEEEEEECSSS----------------------------------------------
T ss_pred             cccCCCCCCceECCEECCCCCCCeEEEEEEecCC----------------------------------------------
Confidence            3688888899999999999999999999764311                                              


Q ss_pred             eecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeeccc-ccccceEEEEEEEeCCCCCC
Q psy3170         262 SMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSY-SVTDNIHRVMQNILHPNYTT  339 (525)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~-~~~~~~~~v~~i~~hp~y~~  339 (525)
                                      ..++|+||||+++||||||||+... ....+.|++|.. +... ........|.++++||+|+.
T Consensus       412 ----------------~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~-~~~~~~~~~~~~~V~~ii~Hp~y~~  474 (625)
T 2f83_A          412 ----------------QRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGIL-NQSEIKEDTSFFGVQEIIIHDQYKM  474 (625)
T ss_dssp             ----------------SEEEEEEEECSSSEEEECGGGGSSCCCGGGEEEEESCS-BGGGCCSSCCCEEEEEEEECTTCCB
T ss_pred             ----------------CcEEEEEEEECCCEEEEcHHhCCCCCCCceEEEEEEec-cCCCCCCCceEEeEEEEEECCccCc
Confidence                            2689999999999999999999764 234578888877 3332 22233455999999999998


Q ss_pred             CCCCcccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC
Q psy3170         340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT  417 (525)
Q Consensus       340 ~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~  417 (525)
                        ....||||||+|++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|+++.+++++.++|...+..
T Consensus       475 --~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~-~~s~~L~~~~v~i~~~~~C~~~~~~  551 (625)
T 2f83_A          475 --AESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRD-KIQNTLQKAKIPLVTNEECQKRYRG  551 (625)
T ss_dssp             --TTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC-------CCCSBCBCCEECCCCHHHHHTTCTT
T ss_pred             --CCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCC-cCCcccEEEEEEEcCHHHHHHHhcc
Confidence              67789999999999999999999999997643  457889999999876544 4567899999999999999987753


Q ss_pred             --CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         418 --LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       418 --~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                        +.+.||||+...++.+.|.|||||||++..++  +|+|+||+|||.+|+..+.|+|||||+.|++||+++|.
T Consensus       552 ~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~--~~~lvGIvS~G~~C~~~~~P~vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          552 HKITHKMICAGYREGGKDACKGDSGGPLSCKHNE--VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             SCCCTTBCCC----------CCCTTCEEEEEETT--EEEEEEEEEECCC----CCCCEEEEGGGGHHHHHHTC-
T ss_pred             CCCCCCeEEeecCCCCCcCCCCCcccceEEEECC--eEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence              67899999876667899999999999997654  89999999999999877899999999999999999885

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=7.7e-45  Score=339.24  Aligned_cols=191  Identities=26%  Similarity=0.472  Sum_probs=161.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.+.....+.|++|.. +....... ....|.+++.| +|+.  ....||||||||++|+
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~h-~y~~--~~~~~DIALl~L~~~~   98 (218)
T 2z7f_E           23 GHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAH-NLSRREPTRQVFAVQRIFEN-GYDP--VNLLNDIVILQLNGSA   98 (218)
T ss_dssp             EEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCS-BTTSCCTTCEEEEEEEEEES-CCBT--TTTBSCCEEEEESSCC
T ss_pred             CcEEEEEEccCCEEEEcHHhcCCCCcCcEEEEEece-ecCCCCCceEEEEEEEEEcc-CCCC--CCCCCCEEEEEECCcC
Confidence            588999999999999999999775556789999987 33333222 34449999999 9987  6788999999999999


Q ss_pred             ccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         358 EFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       358 ~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      .|+++++|||||....  ..+..++++|||.+.... ..+..|++..++++ .+.|...       ++|++...++.+.|
T Consensus        99 ~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~-~~~C~~~-------~~Ca~~~~~~~~~C  169 (218)
T 2z7f_E           99 TINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTVV-TSLCRRS-------NVCTLVRGRQAGVC  169 (218)
T ss_dssp             CCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSC-CBCSBCEEEEEEEE-CTTCCTT-------SEEEECTTSCCBCC
T ss_pred             cCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCC-CccchheEeeeEEe-hhHcCcc-------eeeeccCCCCCeeC
Confidence            9999999999997654  467899999999887654 45788999999999 8999763       89998765578999


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEee--cCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSY--GRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~--g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .|||||||++      +.+|+||+||  |. |+....|++||||+.|++||+++|+
T Consensus       170 ~GDSGgPl~~------~~~l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          170 FGDSGSPLVC------NGLIHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             TTCTTCEEEE------TTEEEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCcCCCceEE------ccEEEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            9999999998      2379999999  66 9877789999999999999998863

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=1.6e-44  Score=338.82  Aligned_cols=194  Identities=23%  Similarity=0.409  Sum_probs=161.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc--ceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD--NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~--~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.......+.|++|.+ ........  ....|.+++.| +|+.  ....||||||+|++|
T Consensus        23 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~V~~G~~-~~~~~~~~~~~~~~v~~i~~h-~y~~--~~~~~DIALl~L~~~   98 (225)
T 1a7s_A           23 RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAY-DLRRRERQSRQTFSISSMSEN-GYDP--QQNLNDLMLLQLDRE   98 (225)
T ss_dssp             EEEEEEEEEETTEEEECGGGC----CCSEEEEESCS-STTSCCTTTCEEEEEEEEECS-SCBT--TTTBSCCEEEEESSC
T ss_pred             CcEEEEEEeeCCEEEEchhccCCCCCCceEEEEeee-ECCCCCCcceeEEeEEEEecc-cccC--CCCcCCEEEEEcCCc
Confidence            588999999999999999999875567789999987 33322222  33449999999 9987  677899999999999


Q ss_pred             cccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCC
Q psy3170         357 VEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT  434 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~  434 (525)
                      +.|+++++|+|||....  ..+..++++|||.+...+ ..+..|++..+++++.+.|..       .++|++...++.+.
T Consensus        99 ~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~-------~~~Ca~~~~~~~~~  170 (225)
T 1a7s_A           99 ANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGI  170 (225)
T ss_dssp             CCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTC-CCCSSCEEEEEEECCGGGSCT-------TEEEEECSSSSCBC
T ss_pred             ccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCC-CcccccceeeeEECCHHHhcc-------CceEEeccCCCCCc
Confidence            99999999999997765  567899999999887554 457889999999999999965       79999976667899


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      |.|||||||++.      .+|+||+||| ..|+..  |++||||+.|++||+++|....
T Consensus       171 C~GDSGgPl~~~------g~l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~~~~~  221 (225)
T 1a7s_A          171 CNGDGGTPLVCE------GLAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNNPG  221 (225)
T ss_dssp             CTTCTTCEEEET------TEEEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHHHSCS
T ss_pred             ccCCCcchheeC------CEEEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHhcCCC
Confidence            999999999983      2899999999 788743  9999999999999999997543

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=5.6e-45  Score=371.61  Aligned_cols=237  Identities=28%  Similarity=0.440  Sum_probs=186.0

Q ss_pred             ccccCCC-----CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccch
Q psy3170         182 TQCDILA-----MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR  256 (525)
Q Consensus       182 ~~Cg~~~-----~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~  256 (525)
                      ..||...     ..||+||.+|..++|||+|++..                                             
T Consensus       143 ~~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~---------------------------------------------  177 (399)
T 1gpz_A          143 PVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI---------------------------------------------  177 (399)
T ss_dssp             ECCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEES---------------------------------------------
T ss_pred             CCCCCcCCcccCCCEEECCEECCCCCCCCEEEECC---------------------------------------------
Confidence            4688653     46999999999999999998742                                             


Q ss_pred             hheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCC-----CCceEEEEEEEeecccccccceEEEEEE
Q psy3170         257 TLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL-----GKPRYVRFGLITKLSYSVTDNIHRVMQN  331 (525)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~v~~g~~~~~~~~~~~~~~~v~~i  331 (525)
                                            ...|+||||+++||||||||+....     ...+.|++|.+ +...........|+++
T Consensus       178 ----------------------~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~-~~~~~~~~~~~~v~~i  234 (399)
T 1gpz_A          178 ----------------------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHT-NVEELMKLGNHPIRRV  234 (399)
T ss_dssp             ----------------------SSEEEEEEETTTEEEECGGGTSCTTC-----CCCEEEESCS-BHHHHHHTCCCCEEEE
T ss_pred             ----------------------CCCeEEEEeCCCEEEeChhcccccccccCCcceEEEEeccc-cccccccccccceEEE
Confidence                                  2369999999999999999997532     23568899976 3322222233459999


Q ss_pred             EeCCCCCCC-CCCcccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeCh
Q psy3170         332 ILHPNYTTE-GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINN  408 (525)
Q Consensus       332 ~~hp~y~~~-~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~  408 (525)
                      ++||+|+.. .....||||||||++|+.|+++++|||||....  ..+..++++|||.+..   ..+..|+++.+++++.
T Consensus       235 ~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~---~~~~~L~~~~~~i~~~  311 (399)
T 1gpz_A          235 SVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE---KIAHDLRFVRLPVANP  311 (399)
T ss_dssp             EECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC--------CCSBCEEEEEEEECH
T ss_pred             EECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCC---ccCccceEEEEEEcCH
Confidence            999999752 135679999999999999999999999998654  3577899999998754   3467899999999999


Q ss_pred             hhhhcccC------CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchh
Q psy3170         409 DTCSKQET------TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVP  482 (525)
Q Consensus       409 ~~C~~~~~------~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~  482 (525)
                      +.|...+.      .+.+.||||+...++.++|.|||||||++...+.++|+|+||+|||.+|+.  .|++||||+.|++
T Consensus       312 ~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~C~~--~~~vyt~V~~y~~  389 (399)
T 1gpz_A          312 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  389 (399)
T ss_dssp             HHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTTTTT--TEEEEEEGGGGHH
T ss_pred             HHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCCcCC--CCeEEEEhHHhHH
Confidence            99987653      256789999876557899999999999987654459999999999999984  4899999999999


Q ss_pred             hhccccccc
Q psy3170         483 WIVHTVWPD  491 (525)
Q Consensus       483 WI~~~i~~~  491 (525)
                      ||+++|..+
T Consensus       390 WI~~~~~~~  398 (399)
T 1gpz_A          390 WIKKEMEEE  398 (399)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHhccC
Confidence            999999653

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=1.6e-44  Score=338.79  Aligned_cols=200  Identities=25%  Similarity=0.418  Sum_probs=165.5

Q ss_pred             EeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCccc
Q psy3170         281 FCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEF  359 (525)
Q Consensus       281 ~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~~  359 (525)
                      .|+||||+++||||||||+... ....+.|++|.. +.... ......+.++++||+|+.  ....||||||||++|+.+
T Consensus        21 ~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~-~~~~~-~~~~~~v~~i~~hp~y~~--~~~~~DIALl~L~~~v~~   96 (224)
T 3beu_A           21 GCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV-DLQSS-SAVKVRSTKVLQAPGFTK--ETYGKDWALIKLAQPINQ   96 (224)
T ss_dssp             TEEEEEEETTEEEECGGGSCSSEEBCCCEEEESCS-BTTCT-TCEEEEEEEEEECTTCCC--GGGSCCCEEEEESSCCCS
T ss_pred             ceeEEEeeCCEEEEChhhcCCCCCcceEEEEeeEe-ecCCC-CceEEEEEEEEeCCCcCC--CcCCCCEEEEEeCCCCCC
Confidence            4999999999999999999764 235678888876 33221 223445999999999987  677899999999999964


Q ss_pred             CCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCCcCCCcC
Q psy3170         360 SETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       360 ~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~~~~C~g  437 (525)
                          .|+||+......+..++++|||.+...+ ..+..|++..+++++.+.|+..+..  +.+.|||++...++.+.|.|
T Consensus        97 ----~~i~l~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~~~~~~~C~G  171 (224)
T 3beu_A           97 ----PTLKIATTTAYNQGTFTVAGWGANREGG-SQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQG  171 (224)
T ss_dssp             ----CCCEECCSSTTSSSEEEEEESSCSSTTC-CCCSBCEEEEEEEECHHHHHHHCSSCCCGGGEEEECCSSSSCBCCTT
T ss_pred             ----CccccccccccCCCEEEEEecCccCCCC-cccceeeEeeCcccCHHHhhhhcCCccCCCCeEEeccCCCCCcCCCC
Confidence                6889987665556689999999887654 4677899999999999999987653  66789999876667899999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ||||||++..++ ++|+|+||+|||..|+..+.|++||||+.|++||+++++.
T Consensus       172 DsGgPl~~~~~~-~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          172 DSGGPMFRKDNA-DEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             CTTCEEEEECTT-SCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             cCCCeeEEecCC-CCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            999999987533 3899999999999998778899999999999999998853

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=351.40  Aligned_cols=198  Identities=18%  Similarity=0.312  Sum_probs=161.1

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.+ ..  ........|.++++||+|+.  .+..||||||||++|+.
T Consensus        76 ~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~-~~--~~~~~~~~v~~i~~Hp~y~~--~~~~nDIALl~L~~pv~  148 (283)
T 3f1s_B           76 KDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYFN-RT--SQDPLMIKITHVHVHMRYDA--DAGENDLSLLELEWPIQ  148 (283)
T ss_dssp             CEEEEEEEEETTEEEECHHHHTS--CSSCEEEECTT-C---CCCCEEEEEEEEEECTTCBT--TTTBTCCEEEEESSCCC
T ss_pred             CeeeccEEecCCEEEEcHHhcCc--cCceEEEEeee-eC--CCCcEEEEeEEEEECCCCCC--CCCCCCEEEEEeCCccc
Confidence            58899999999999999999965  35789999976 22  22334445999999999988  67889999999999999


Q ss_pred             cCCCccceecCCCC-----CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCc
Q psy3170         359 FSETLKPACLNRAH-----NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGK  432 (525)
Q Consensus       359 ~~~~v~picL~~~~-----~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~  432 (525)
                      |+++++|||||...     ...+..++++|||..   ....+..|+++.+++++.++|...+.. +.+.|||++.. ++ 
T Consensus       149 ~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~---~~~~~~~L~~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~~-~~-  223 (283)
T 3f1s_B          149 CPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN---GTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSS-VA-  223 (283)
T ss_dssp             TTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBCC----------CEEEEEEEECHHHHHHHHTSCCCTTEEEEECS-SC-
T ss_pred             CCCCEEeEECCCCccccccccCCCEEEEEECCCC---CCCCCceeeEEEEeEeCHHHHhhhhcCCCCCCeEcccCC-CC-
Confidence            99999999999864     356789999999982   225678899999999999999988765 77899999753 23 


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                       .|.|||||||++..++  +|+|+||+||+. |+..+.|++||+|+.|++||+++|+...
T Consensus       224 -~~~gDSGgPlv~~~~~--~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~~~~~~  279 (283)
T 3f1s_B          224 -AMHWMDGSVVTREHRG--SWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMNAHH  279 (283)
T ss_dssp             -GGGBCTTCEEEEECSS--CEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHHHTC--
T ss_pred             -CCCCCCCCcEEEEECC--EEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHHhhcch
Confidence             4577999999997655  899999999985 6667789999999999999999997643

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=1.4e-44  Score=340.23  Aligned_cols=198  Identities=24%  Similarity=0.438  Sum_probs=168.5

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.......+.|++|.. ............|.++++| .|+.  ....||||||+|++|+.
T Consensus        25 ~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~g~~-~~~~~~~~~~~~v~~i~~h-~y~~--~~~~~DIALl~L~~~v~  100 (228)
T 3h7o_A           25 SLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYEST-NLWEDPGKSDPYVSHVYLS-FYRQ--ETMENDIAILELSRPLK  100 (228)
T ss_dssp             CEEEEEEESSSSEEEECHHHHTTSCGGGCEEEESCS-BTTTBCCEEECCEEEEEES-SCBT--TTTBTCCEEEEESSCCC
T ss_pred             ceEeeeEEeeCCEEEEcHHhcccCCCCcEEEEeccc-ccccCCCceeeeEEEEEcc-ccCC--CCccCCEEEEEECCccc
Confidence            358999999999999999999766667788999987 3333233333449999999 9987  67889999999999999


Q ss_pred             cCC-CccceecCCCC--CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCCcC
Q psy3170         359 FSE-TLKPACLNRAH--NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKD  433 (525)
Q Consensus       359 ~~~-~v~picL~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~~~  433 (525)
                      |++ .++|||||...  ...+..++++|||.+.... ..+..|+++.+++++.++|...+..  +.+.+||++..  +.+
T Consensus       101 ~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca~~~--~~~  177 (228)
T 3h7o_A          101 LDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMD-PKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQKV--GVS  177 (228)
T ss_dssp             CCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSC-GGGGBCEEEEEEEECHHHHHHHHTTSCCCSSEEEEECT--TCC
T ss_pred             ccccccccccCCccccCCCCCCeeEEEEEecCCCCC-CcccccccceeEEEcHHHHHHHhcCccCCceEEecCCC--CCc
Confidence            999 99999999876  4678899999999887655 5677899999999999999988764  67889999864  388


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .|.|||||||++      ++.|+||+||+..|+. +.|++||+|+.|++||+++|++
T Consensus       178 ~C~GDsGgPl~~------~~~l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          178 LESGDAGDPTVQ------QDTLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             CCGGGTTCEEEE------TTEEEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHTT
T ss_pred             CCCCCCCCccee------cCeEEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhhc
Confidence            999999999998      3359999999999985 7899999999999999999864

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=6.9e-44  Score=333.68  Aligned_cols=217  Identities=29%  Similarity=0.502  Sum_probs=180.5

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|+|.+...+                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGNP--------------------------------------------------------   24 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBT--------------------------------------------------------
T ss_pred             CCCCEECCCCCcCCEEEEEEecCC--------------------------------------------------------
Confidence            689999999999999999764311                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+.......+.|++|.+ ........ ....|.++++| +|+.  ....|||||
T Consensus        25 ------~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~h-~y~~--~~~~~DiAL   94 (221)
T 1fuj_A           25 ------GSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAH-NVRTQEPTQQHFSVAQVFLN-NYDA--ENKLNDILL   94 (221)
T ss_dssp             ------TCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCS-BTTSCCTTCEEEEEEEEEEC-CCBT--TTTBCCCEE
T ss_pred             ------CCEEEEEEEecCCEEEEchHhcCcCCCCceEEEEeee-eccCCCCceEEEEEEEEEeC-CCCC--CCCcccEEE
Confidence                  2578999999999999999999875556788999987 33333223 33449999999 9987  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeC
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM  428 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~  428 (525)
                      |+|++|+.|+++++|||||....  ..+..++++|||.+...+ ..+..|++..+.++ ...|..       .++|++..
T Consensus        95 l~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~-~~~~~l~~~~~~~~-~~~C~~-------~~~Ca~~~  165 (221)
T 1fuj_A           95 IQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHD-PPAQVLQELNVTVV-TFFCRP-------HNICTFVP  165 (221)
T ss_dssp             EEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSS-CBCSBCEEEEEEEE-CTTCCT-------TEEEEECS
T ss_pred             EEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCC-CHHHHhhcccceEE-eeecCC-------ceeeeccC
Confidence            99999999999999999998764  568899999999887544 46778999999999 788865       38999876


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .++.+.|.|||||||++      +.+|+||+||+. +|+..+.|++||||+.|++||+++|+
T Consensus       166 ~~~~~~C~GDSGgPL~~------~~~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          166 RRKAGICFGDSGGPLIC------DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             SSSCBCCTTCTTCEEEE------TTEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCeeEE------CCEEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence            66789999999999998      127999999953 49877789999999999999999874

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=5.6e-44  Score=336.37  Aligned_cols=220  Identities=29%  Similarity=0.524  Sum_probs=182.2

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|.+....                                                        
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQD--------------------------------------------------------   24 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETT--------------------------------------------------------
T ss_pred             CCCCeECCCCCCCcEEEEEEEecC--------------------------------------------------------
Confidence            689999999999999999765321                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                           ...++|+||||+++||||||||+.+  ...+.|++|.. ....  ......|.++++||+|+.  ....||||||
T Consensus        25 -----~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~v~~G~~-~~~~--~~~~~~v~~i~~hp~y~~--~~~~~DiALl   92 (230)
T 2hlc_A           25 -----QRRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLGSA-VQYE--GEAVVNSERIISHSMFNP--DTYLNDVALI   92 (230)
T ss_dssp             -----SCEEEEEEEEEETTEEEECHHHHTT--EEEEEEEESCS-BTTC--CSEEEECSEEEECTTCBT--TTTBTCCEEE
T ss_pred             -----CCCEEEEEEEeeCCEEEECHHHCCC--CcceEEEEeee-ecCC--CCeEEEEEEEEECCCCCC--CCccccEEEE
Confidence                 1368999999999999999999975  35677888876 2222  223445999999999988  6788999999


Q ss_pred             EECCCcccCCCccceecCCCC----CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEE
Q psy3170         352 KIAPPVEFSETLKPACLNRAH----NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCA  425 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~----~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca  425 (525)
                      +|+ |+.|+++++|||||...    ...+..++++|||.+...    ...|++..+.+++.+.|...+..  +.+.+||+
T Consensus        93 ~L~-~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~----~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~Ca  167 (230)
T 2hlc_A           93 KIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTD----TVILQYTYNLVIDNDRCAQEYPPGIIVESTICG  167 (230)
T ss_dssp             ECS-CCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSC----CCBCEEEEEEEECHHHHHTTSCTTSSCTTEEEE
T ss_pred             Eec-CCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCC----CceeEEEEEEEeCHHHhhhhhCCCcccCCeEEe
Confidence            999 99999999999999765    246778999999987543    26799999999999999987753  67889999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +. ..+.+.|.|||||||++..    +++|+||+||+.  .|. .+.|.+||+|++|++||++++..
T Consensus       168 ~~-~~~~~~C~GDSGgPl~~~~----~~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~~~~~  228 (230)
T 2hlc_A          168 DT-SDGKSPCFGDSGGPFVLSD----KNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQNTGI  228 (230)
T ss_dssp             CC-TTSCBCCTTCTTCEEEEGG----GTEEEEEEEECCTTCTT-SCCCEEEEEGGGGHHHHHHHHCC
T ss_pred             cC-CCCCCcCCCCCCCeeEECc----CCEEEEEEEEeCCCCCC-CCCCCEEEEhHHhHHHHHHhhCc
Confidence            76 4567999999999999843    458999999986  785 67899999999999999998854

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=373.68  Aligned_cols=237  Identities=28%  Similarity=0.489  Sum_probs=152.1

Q ss_pred             ccccCCC-----CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccch
Q psy3170         182 TQCDILA-----MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR  256 (525)
Q Consensus       182 ~~Cg~~~-----~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~  256 (525)
                      ..||...     ..||+||.+|..++|||+|+|...                                            
T Consensus       307 ~~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~--------------------------------------------  342 (565)
T 2xrc_A          307 LSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDA--------------------------------------------  342 (565)
T ss_dssp             CCCCC--------------------CCTTBCEEEES--------------------------------------------
T ss_pred             cccCCCCCcccCCCceECCEECCCCCCCcEEEEecC--------------------------------------------
Confidence            3688653     469999999999999999999632                                            


Q ss_pred             hheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccc-cccceEEEEEEEeCC
Q psy3170         257 TLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHP  335 (525)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~-~~~~~~~v~~i~~hp  335 (525)
                                           ..++|+||||+++||||||||+.......+.|++|.+...... .......|+++++||
T Consensus       343 ---------------------~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~~~~~~~V~~ii~Hp  401 (565)
T 2xrc_A          343 ---------------------SGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHE  401 (565)
T ss_dssp             ---------------------SSCCCCCEEEETTEEEECHHHHTTCSSCCEEEEC-------------CEEEEEEEEECT
T ss_pred             ---------------------CceeeeEEEEeCCEEEEChhhcccCCCcceEEEEEEeeccCCCCCccEEEEEEEEEeCC
Confidence                                 1478999999999999999999876566788999987322222 123344599999999


Q ss_pred             CCCCCCCCcccceEEEEECCCcccCC----CccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChh
Q psy3170         336 NYTTEGTSQYHDIALLKIAPPVEFSE----TLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINND  409 (525)
Q Consensus       336 ~y~~~~~~~~~DIAll~L~~~~~~~~----~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~  409 (525)
                      +|+.  .++.||||||+|++|+.|++    .++|||||....  ..+..++++|||.+...  ..+..|+++.+++++  
T Consensus       402 ~Y~~--~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~--~~~~~L~~~~v~i~~--  475 (565)
T 2xrc_A          402 NYNA--GTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDN--ERVFSLQWGEVKLIS--  475 (565)
T ss_dssp             TCCT--TTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC---------------CEEEEEECS--
T ss_pred             CCCC--CcccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCccCCCC--CccceeeEEeeeehH--
Confidence            9998  67889999999999998764    689999997654  45788999999988653  356789999999987  


Q ss_pred             hhhcccCC-CC-CCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         410 TCSKQETT-LI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       410 ~C~~~~~~-~~-~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      .|...+.. +. ..||||+...++.++|.|||||||++...++ +|+|+||+|||..|+.++.|+|||||+.|++||+++
T Consensus       476 ~C~~~~~~~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~-~~~lvGIvS~G~~C~~~~~PgVYTrVs~y~~WI~~~  554 (565)
T 2xrc_A          476 NCSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANN-VTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYH  554 (565)
T ss_dssp             CTHHHHTTSCCTTTEEEEEEC----------CCCEEEEECTTC-CEEEEEEECC------CCCCEEEEEGGGGHHHHHHH
T ss_pred             HhHHhhccCcCCCceEEeCCCCCCCccCCCccccceEEEeCCC-cEEEEEEEeeCCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            49887654 33 4599999876678999999999999875433 899999999999999888999999999999999999


Q ss_pred             ccc
Q psy3170         488 VWP  490 (525)
Q Consensus       488 i~~  490 (525)
                      |..
T Consensus       555 i~~  557 (565)
T 2xrc_A          555 VGR  557 (565)
T ss_dssp             C--
T ss_pred             hcc
Confidence            864

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=2e-42  Score=341.59  Aligned_cols=195  Identities=18%  Similarity=0.315  Sum_probs=164.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+..  ...+.|++|.. ..  ........|.++++||+|+.  ....||||||||++|+.
T Consensus       117 ~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~-~~--~~~~~~~~v~~i~~Hp~y~~--~~~~~DIALl~L~~pv~  189 (317)
T 3h5c_B          117 KDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYFN-RT--SQDPLMIKITHVHVHMRYDA--DAGENDLSLLELEWPIQ  189 (317)
T ss_dssp             CEEEEEEEEETTEEEECHHHHHS--CSSCEEEECTT-SC--TTSCEEEEEEEEEECTTCBT--TTTBSCCEEEEESSCCC
T ss_pred             ceeeeeEEeeCCEEEEChHhcCc--CCceEEEEeee-cC--CCCcEEEEeeEEEECCCCCC--CCCCCCeEEEEeCCccc
Confidence            57899999999999999999965  45788999965 22  22334455999999999988  67789999999999999


Q ss_pred             cCCCccceecCCCC-----CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCc
Q psy3170         359 FSETLKPACLNRAH-----NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGK  432 (525)
Q Consensus       359 ~~~~v~picL~~~~-----~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~  432 (525)
                      |+++++|||||...     ...+..++++|||..   ....+..|+++.+++++.++|++.+.. +.+.|||++..   .
T Consensus       190 ~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~---~~~~~~~L~~~~v~~~~~~~C~~~~~~~~~~~~~Ca~~~---~  263 (317)
T 3h5c_B          190 CPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN---GTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSS---V  263 (317)
T ss_dssp             TTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCTT---CCSSSCCCBCCEEEEECHHHHHHHHTCCCCTTEEEEECS---C
T ss_pred             CCCCccceeCCCcccccccccCCCeEEEEecCCC---CCCCCccceEEEEEEECHHHHhhhhcCcCCCceeECCCC---C
Confidence            99999999999864     356789999999982   225677899999999999999988764 77899999753   2


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ..|.|||||||++..++  +|+|+||+||+. |+..+.|++||+|+.|++||+++|+
T Consensus       264 ~~~~gDsGgPl~~~~~~--~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          264 AAMHWMDGSVVTREHRG--SWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             CCCCCCTTCEEEEEETT--EEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             CCcCCCCCCCEEEecCC--EEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            46789999999997655  899999999985 6667789999999999999999873

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=4.6e-42  Score=371.08  Aligned_cols=233  Identities=33%  Similarity=0.587  Sum_probs=192.0

Q ss_pred             ccccCCCC------CeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccc
Q psy3170         182 TQCDILAM------PMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPL  255 (525)
Q Consensus       182 ~~Cg~~~~------~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~  255 (525)
                      ..||....      .||+||.+|..++|||+|+|....                                          
T Consensus       546 ~~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~------------------------------------------  583 (791)
T 4dur_A          546 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF------------------------------------------  583 (791)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT------------------------------------------
T ss_pred             cCcCCcccccccCCCceECCEECCCCCCCeEEEEEecC------------------------------------------
Confidence            35876542      599999999999999999996431                                          


Q ss_pred             hhheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeC
Q psy3170         256 RTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILH  334 (525)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~h  334 (525)
                                            ..++|+||||+++||||||||+... ....+.|++|.+.............|.++++|
T Consensus       584 ----------------------~~~~CGGSLIs~~wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~h  641 (791)
T 4dur_A          584 ----------------------GMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE  641 (791)
T ss_dssp             ----------------------SCEEEEEEEEETTEEEECGGGGSSCCCGGGCEEEESCCBSSSCCTTCEEEEEEEEEEC
T ss_pred             ----------------------CCeEEEEEEEeCCEEEECHHHcCCcCCCceEEEEeccccccCCCCccEEEEEEEEECC
Confidence                                  2588999999999999999999754 33568899998732222222334449999999


Q ss_pred             CCCCCCCCCcccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhh
Q psy3170         335 PNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCS  412 (525)
Q Consensus       335 p~y~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~  412 (525)
                      |.+        ||||||+|++|+.|++.|+|||||....  ..+..++++|||.+...  ..+..|+++.+.+++...|.
T Consensus       642 p~~--------nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~~--~~s~~L~~~~v~ii~~~~C~  711 (791)
T 4dur_A          642 PTR--------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT--FGAGLLKEAQLPVIENKVCN  711 (791)
T ss_dssp             TTC--------CSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC-----CCTTBCEEEEEEEECHHHHT
T ss_pred             CCC--------CceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCCC--CCCCeeEEEEEEEeCHHHhh
Confidence            963        6999999999999999999999997653  45788999999987643  35778999999999999998


Q ss_pred             ccc---CCCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         413 KQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       413 ~~~---~~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ...   ..+.+.||||+...++.++|.|||||||++..++  +|+|+||+|||.+|+..+.|+|||+|+.|++||+++|.
T Consensus       712 ~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~--~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~~~i~  789 (791)
T 4dur_A          712 RYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR  789 (791)
T ss_dssp             STTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEETT--EEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHHHHHHH
T ss_pred             cccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeCC--eEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHH
Confidence            752   2377899999887778899999999999997655  89999999999999988899999999999999999985


Q ss_pred             c
Q psy3170         490 P  490 (525)
Q Consensus       490 ~  490 (525)
                      .
T Consensus       790 ~  790 (791)
T 4dur_A          790 N  790 (791)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=8.8e-40  Score=343.42  Aligned_cols=204  Identities=25%  Similarity=0.452  Sum_probs=159.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCC-------CCcccceEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIAL  350 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DIAl  350 (525)
                      .++|+||||+++||||||||+... ....+.|++|..        .....|.++++||+|+...       ....|||||
T Consensus       241 ~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~--------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIAL  312 (497)
T 1rrk_A          241 HESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE--------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVAL  312 (497)
T ss_dssp             CEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTC--------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEE
T ss_pred             CceeEEEEecCCEEEECHHhCCCCCCceEEEEEeCCc--------cceeeeEEEEeCCCccccccccccccccCCCcEEE
Confidence            589999999999999999999753 234577888753        2345599999999998631       246799999


Q ss_pred             EEECCCcccCCCccceecCCCC-------CCCCCcEEEEEeeeccCCC------CcccccceEEEEEeeC---hhhhhcc
Q psy3170         351 LKIAPPVEFSETLKPACLNRAH-------NVKSPTAIASGFGKLNYFD------TKESLRLMKVVLDIIN---NDTCSKQ  414 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~-------~~~~~~~~~~Gwg~~~~~~------~~~~~~l~~~~v~~~~---~~~C~~~  414 (525)
                      |+|++|+.|+++++|||||...       ...+..|++.|||......      ...+..|++..+.+++   ...|...
T Consensus       313 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~  392 (497)
T 1rrk_A          313 IKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERD  392 (497)
T ss_dssp             EEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHG
T ss_pred             EEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhh
Confidence            9999999999999999999753       2456778888998654321      0235679999999998   6899863


Q ss_pred             ------cC-------CCCCCcEEEEeCCC--CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCC----CCCCce-
Q psy3170         415 ------ET-------TLISSQLCATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCG----HANTPA-  472 (525)
Q Consensus       415 ------~~-------~~~~~~~Ca~~~~~--~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~----~~~~p~-  472 (525)
                            |.       .+.+.||||+...+  +.+.|.|||||||++..++  +|+|+||+|||.  .|+    ..+.|+ 
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~~~--~~~l~GIvS~g~~~~C~~~~~~~~~P~~  470 (497)
T 1rrk_A          393 AQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRS--RFIQVGVISWGVVDVCKNQKRQKQVPAH  470 (497)
T ss_dssp             GGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETT--EEEEEEEEEEESCCCC--------CCTT
T ss_pred             hhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEeCC--EEEEEEEEEecCCCCCCCccccCCCCCc
Confidence                  21       26788999986542  5789999999999997654  899999999997  798    456675 


Q ss_pred             ---EEEEcCCchhhhcccccccc
Q psy3170         473 ---IYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       473 ---v~t~v~~~~~WI~~~i~~~~  492 (525)
                         +||+|++|++||+++|..+.
T Consensus       471 ~r~vyt~V~~~~~WI~~~~~~~~  493 (497)
T 1rrk_A          471 ARDFHINLFQVLPWLKEKLQDED  493 (497)
T ss_dssp             CEEEEEEGGGGHHHHHHHTTTSS
T ss_pred             cceeeeeHHHHHHHHHHHhCccc
Confidence               99999999999999997644

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=1.4e-39  Score=342.70  Aligned_cols=205  Identities=23%  Similarity=0.337  Sum_probs=151.5

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCC-------CCcccceEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIAL  350 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DIAl  350 (525)
                      .++|+||||+++||||||||+... ....+.|++|.+ ..   .......|+++++||+|+...       ....|||||
T Consensus       246 ~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~-~~---~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIAL  321 (509)
T 2odp_A          246 QETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDP-KS---QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIAL  321 (509)
T ss_dssp             --CEEEEECSSSEEEECGGGC--------CEEEECCT-TC---TTCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEE
T ss_pred             CcEEEEEEEcCCEEEEcHHHcCCCCCcceEEEEeCCc-cc---CCCceeeeEEEEECCCCccccccccccccccCCCeEE
Confidence            578999999999999999999753 235678999976 21   122334499999999998631       246799999


Q ss_pred             EEECCCcccCCCccceecCCCC-------CCCCCcEEEEEeeeccCCCCcc---cccceEEEEEee---Chhhhhcc---
Q psy3170         351 LKIAPPVEFSETLKPACLNRAH-------NVKSPTAIASGFGKLNYFDTKE---SLRLMKVVLDII---NNDTCSKQ---  414 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~-------~~~~~~~~~~Gwg~~~~~~~~~---~~~l~~~~v~~~---~~~~C~~~---  414 (525)
                      |+|++|+.|+++++|||||...       ...+..|.+.|||.......+.   ....++..+.++   +.+.|...   
T Consensus       322 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~  401 (509)
T 2odp_A          322 LKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQ  401 (509)
T ss_dssp             EEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGG
T ss_pred             EEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhc
Confidence            9999999999999999999653       2456778888999765432111   011234555554   68999874   


Q ss_pred             ----cC-------CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCC---------CCCCc-
Q psy3170         415 ----ET-------TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCG---------HANTP-  471 (525)
Q Consensus       415 ----~~-------~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~---------~~~~p-  471 (525)
                          |.       .+.+.||||+. .++.+.|.|||||||++..++  +|+|+||+|||.  .|+         .+..| 
T Consensus       402 ~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~GDSGGPL~~~~~~--~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg  478 (509)
T 2odp_A          402 EKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLERRF--RFFQVGLVSWGLYNPCLGSADKNSRKRAPRSK  478 (509)
T ss_dssp             CTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGGGTTCEEEEEETT--EEEEEEEEEEESCCTTC-----CCCCCCCTTC
T ss_pred             ccccccccccccccccCCEEEeCC-CCCCcccCCCccCceEEEECC--eEEEEEEEEEcCCCCCCCcccccccccCcccC
Confidence                32       26788999985 467899999999999997654  999999999996  696         23445 


Q ss_pred             -----eEEEEcCCchhhhcccccc
Q psy3170         472 -----AIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       472 -----~v~t~v~~~~~WI~~~i~~  490 (525)
                           .+||+|++|++||++++..
T Consensus       479 ~~y~~~vyt~V~~~~~WI~~~~~~  502 (509)
T 2odp_A          479 VPPPRDFHINLFRMQPWLRQHLGD  502 (509)
T ss_dssp             SSCCCEEEEEGGGCHHHHHHHHTT
T ss_pred             CCCCCceeeeHHHHhHHHHHHhCC
Confidence                 5999999999999999864

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=5.2e-37  Score=337.86  Aligned_cols=203  Identities=25%  Similarity=0.430  Sum_probs=159.1

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCC-------CCcccceEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIAL  350 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DIAl  350 (525)
                      .++|+||||+++||||||||+... ....+.|++|..        .....|.++++||+|+...       ..+.|||||
T Consensus       483 ~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~--------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIAL  554 (741)
T 3hrz_D          483 HESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE--------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVAL  554 (741)
T ss_dssp             ---EEEEECSSSEEEECGGGCC-----CCEEEEETTC--------SCCEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEE
T ss_pred             CCEEEEEEecCCEEEEchhhccccCCcceEEEEeCCC--------ceEEEEEEEEECCCCCcccccccccCCccCCcEEE
Confidence            588999999999999999999753 345677888754        1345599999999998632       236799999


Q ss_pred             EEECCCcccCCCccceecCCCC-------CCCCCcEEEEEeeeccCCCC------cccccceEEEEEeeC---hhhhhcc
Q psy3170         351 LKIAPPVEFSETLKPACLNRAH-------NVKSPTAIASGFGKLNYFDT------KESLRLMKVVLDIIN---NDTCSKQ  414 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~-------~~~~~~~~~~Gwg~~~~~~~------~~~~~l~~~~v~~~~---~~~C~~~  414 (525)
                      |+|++|+.|+++++|||||...       ...+..+.+.|||.+.....      .....|+...+.+++   ...|...
T Consensus       555 lkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~  634 (741)
T 3hrz_D          555 IKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERD  634 (741)
T ss_dssp             EEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHG
T ss_pred             EEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccccccceeccccccccccceeEeecCcccchhhhh
Confidence            9999999999999999999643       34577888999997655331      125678999999998   7899873


Q ss_pred             ------c-------CCCCCCcEEEEeCCC--CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCC---CCCc---
Q psy3170         415 ------E-------TTLISSQLCATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGH---ANTP---  471 (525)
Q Consensus       415 ------~-------~~~~~~~~Ca~~~~~--~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~---~~~p---  471 (525)
                            +       ..+.+.|||++...+  +.++|.|||||||++..++  +|+|+||+|||.  .|+.   .+.|   
T Consensus       635 ~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~~~--~~~lvGIvS~G~~~~C~~~~~~~~p~~~  712 (741)
T 3hrz_D          635 AQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRS--RFIQVGVISWGVVDVCKNQKRQKQVPAH  712 (741)
T ss_dssp             GGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETT--EEEEEEEEEEESSCCCC------CCCTT
T ss_pred             hhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEeeCC--eEEEEEEEeecCCcccCCcccccCCCCC
Confidence                  2       126789999987542  6789999999999997655  999999999997  8987   5788   


Q ss_pred             --eEEEEcCCchhhhccccccc
Q psy3170         472 --AIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       472 --~v~t~v~~~~~WI~~~i~~~  491 (525)
                        ++||+|+.|++||+++|..+
T Consensus       713 ~~~vyt~V~~~~~WI~~~i~~~  734 (741)
T 3hrz_D          713 ARDFHINLFQVLPWLKEKLQDE  734 (741)
T ss_dssp             CEEEEEEGGGSHHHHHHHTTTS
T ss_pred             ccceEEEhHHhHHHHHHHhcCC
Confidence              99999999999999999764

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=100.00  E-value=2.6e-37  Score=287.62  Aligned_cols=181  Identities=18%  Similarity=0.220  Sum_probs=147.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCce----EEEEEEEeecccccccceEEEEEEEeCCCCC-CCCCCcccceEEEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPR----YVRFGLITKLSYSVTDNIHRVMQNILHPNYT-TEGTSQYHDIALLKI  353 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~----~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~-~~~~~~~~DIAll~L  353 (525)
                      .++|+|+||+++||||||||+.+.....+    .|++|.. ....  ......|.++++||+|+ .  ....||||||+|
T Consensus        29 ~~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~-~~~~--~~~~~~v~~i~~hp~y~~~--~~~~~DiAll~L  103 (215)
T 1p3c_A           29 GSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMN-DSTA--VNGSANMTEFYVPSGYINT--GASQYDFAVIKT  103 (215)
T ss_dssp             SCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCB-TTBC--TTCCEEEEEEECCHHHHHH--CCGGGCCEEEEE
T ss_pred             CceEEEEEEeCCEEEECccEeccCCCCccccceEEEEccc-CCCC--CCCeEEEEEEEeCCccccC--CCcccCEEEEEE
Confidence            47899999999999999999976433344    8889877 3222  22355699999999994 4  466799999999


Q ss_pred             CCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcC
Q psy3170         354 APPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKD  433 (525)
Q Consensus       354 ~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~  433 (525)
                      ++|  |+++++|+|||......+..++++|||.+...  ..+..|++..+.+++.+.|...+              .+.+
T Consensus       104 ~~~--~~~~v~pi~l~~~~~~~g~~~~~~Gwg~~~~~--~~~~~l~~~~~~~~~~~~c~~~~--------------~~~~  165 (215)
T 1p3c_A          104 DTN--IGNTVGYRSIRQVTNLTGTTIKISGYPGDKMR--STGKVSQWEMSGSVTREDTNLAY--------------YTID  165 (215)
T ss_dssp             SSC--HHHHHCCCCBCCCSCCTTCEEEEEECCHHHHH--HHSSCCCEEEEEECCEECSSEEE--------------ECCC
T ss_pred             CCC--CcccceeeecCCCcccCCCeEEEecCCCCCcc--cccceechhccCccCcccchhee--------------eccc
Confidence            997  57889999999877778899999999976542  34567899999999999996643              1467


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .|.|||||||++.     +++|+||+|||..|+  ..|.+||+|++|++||++++.
T Consensus       166 ~C~GDSGgPl~~~-----~g~lvGi~S~g~~c~--~~p~v~t~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          166 TFSGNSGSAMLDQ-----NQQIVGVHNAGYSNG--TINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             CCTTCTTCEEECT-----TSCEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHHHT
T ss_pred             cCCCCCCCeeEcc-----CCeEEEEEecccCCC--ccCceeEechHHHHHHHHHhc
Confidence            9999999999874     237999999998887  679999999999999998763

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.97  E-value=6e-31  Score=230.10  Aligned_cols=143  Identities=35%  Similarity=0.603  Sum_probs=125.3

Q ss_pred             CCcccceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCC--cccccceEEEEEeeChhhhhcccCC-C
Q psy3170         342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT--KESLRLMKVVLDIINNDTCSKQETT-L  418 (525)
Q Consensus       342 ~~~~~DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~--~~~~~l~~~~v~~~~~~~C~~~~~~-~  418 (525)
                      .++.||||||||++|+.|+++++|||||......+..++++|||.+.....  ..+..|+++.+++++.++|+..+.. +
T Consensus         4 ~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~   83 (152)
T 2pka_B            4 KDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPDKV   83 (152)
T ss_dssp             SBCTTCCEEEEESSCCCCCSSCCCCCCCSSCCCTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCSSBC
T ss_pred             CCCCCCEEEEEECCCCcCCCCEEeEECCCCCCCCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhcCCC
Confidence            466799999999999999999999999988777789999999998875442  3567899999999999999987754 6


Q ss_pred             CCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         419 ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       419 ~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .+.|||++...++.+.|.|||||||++.      .+|+||+||| ..|+..+.|++||||++|++||+++|..
T Consensus        84 ~~~~iCa~~~~~~~~~C~GDsGgPL~~~------g~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  150 (152)
T 2pka_B           84 TESMLCAGYLPGGKDTCMGDSGGPLICN------GMWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITE  150 (152)
T ss_dssp             CTTEEEEECTTSSCBCCTTCTTCEEEET------TEEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCEEeeccCCCCCcccCCccccceEEC------CEEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhcc
Confidence            7899999876667899999999999983      2599999999 7898778999999999999999998854

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.96  E-value=6.7e-30  Score=217.55  Aligned_cols=104  Identities=31%  Similarity=0.522  Sum_probs=86.6

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..   ....|++|.. +...... .....|.++++||+|+.  ....||||||||++|+
T Consensus        24 ~~~CgGsLIs~~~VLTAAHC~~~---~~~~v~~G~~-~~~~~~~~~~~~~v~~i~~hp~y~~--~~~~~DIALl~L~~~~   97 (131)
T 1yph_C           24 FHFCGGSLINENWVVTAAHCGVT---TSDVVVAGEF-DQGSSSEKIQKLKIAKVFKNSKYNS--LTINNDITLLKLSTAA   97 (131)
T ss_dssp             CEEEEEEEEETTEEEECGGGCCC---TTSEEEESCS-BTTCSSSCCEEEEEEEEEECTTCCT--TTCCSCCEEEEESSCC
T ss_pred             CEEEEEEEeeCCEEEECHHHCCC---CCeEEEEeEc-cCCCCCCceEEEEEEEEEeCCCCCC--CCCCCCEEEEEECCcc
Confidence            58899999999999999999865   5678999987 3332222 33445999999999998  6778999999999999


Q ss_pred             ccCCCccceecCCCCC--CCCCcEEEEEeeecc
Q psy3170         358 EFSETLKPACLNRAHN--VKSPTAIASGFGKLN  388 (525)
Q Consensus       358 ~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~  388 (525)
                      .|+++++|||||....  ..+..|+++|||.+.
T Consensus        98 ~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           98 SFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             CCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSC
T ss_pred             cCCCcCcceECCCcccCCCCCCEEEEEcCCccC
Confidence            9999999999997654  467899999999763

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.96  E-value=1.7e-29  Score=234.33  Aligned_cols=160  Identities=14%  Similarity=0.193  Sum_probs=114.6

Q ss_pred             eeEeEEEEEe---CCEEEecCCCCCCCC----CCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         279 KWFCGGSLIS---PNYVMTAAHCITSPL----GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       279 ~~~C~GtLIs---~~~VLTAAhCv~~~~----~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                      .++|+|+||+   ++||||||||+....    ...+.+++|.+ ...  .......|+++++||+|+.. ....||||||
T Consensus        20 ~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~-~~~--~~~~~~~v~~~~~hp~y~~~-~~~~~DiAll   95 (218)
T 3cp7_A           20 DFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYD-YGE--SEHGVWAAEELVTSAEWANR-GDFEHDYAFA   95 (218)
T ss_dssp             EEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCS-SSC--CTTCCEEEEEEEECHHHHHH-CCGGGCCEEE
T ss_pred             CeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECccc-CCC--CCccEEEEEEEEECcccccC-CCCcCCEEEE
Confidence            6899999999   999999999996532    12455666754 221  11234559999999999631 3567999999


Q ss_pred             EECCC--cccCCCcc-ceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcc-cC----CCCCCcE
Q psy3170         352 KIAPP--VEFSETLK-PACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ-ET----TLISSQL  423 (525)
Q Consensus       352 ~L~~~--~~~~~~v~-picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~-~~----~~~~~~~  423 (525)
                      ||++|  +.|++.++ |++|+... ..+..++++|||.+....   ...|          ..|... +.    .....|+
T Consensus        96 ~L~~~~~~~~~~~v~~~~~l~~~~-~~g~~~~v~GwG~~~~~~---~~~l----------~~C~~~~~~~~~~~~~~~~~  161 (218)
T 3cp7_A           96 VLETKGGTTVQQQVGTASPIAFNQ-PRGQYYSAYGYPAAAPFN---GQEL----------HSCHGTATNDPMGSSTQGIP  161 (218)
T ss_dssp             EECCBTTBCHHHHHSCCBCBCCSC-CSSCEEEEEECCCSTTCC---SSSC----------EEEEEECEECTTSSSCEEEE
T ss_pred             EEeCCCCcChhHhcCcccceeecC-CCCCEEEEEeCCCCCCCC---Ccee----------eEeeeeEEcCCCCCceEEec
Confidence            99999  88888899 99998643 467889999999864211   1122          245432 11    1223678


Q ss_pred             EEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCC
Q psy3170         424 CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG  466 (525)
Q Consensus       424 Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~  466 (525)
                      |+.        |.|||||||++..++  +++|+||+|||.+|+
T Consensus       162 Ca~--------~~GDSGGPlv~~~~g--~~~lvGIvS~G~gc~  194 (218)
T 3cp7_A          162 CNM--------TGGSSGGPWFLGNGT--GGAQNSTNSYGYTFL  194 (218)
T ss_dssp             CCC--------CTTCTTCEEEESSSS--SSCEEEECCEEETTE
T ss_pred             CCC--------CCCCcCCeeEEccCC--CeEEEEEEccccCCC
Confidence            872        579999999986433  688999999999886

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.93  E-value=1.5e-26  Score=221.34  Aligned_cols=175  Identities=16%  Similarity=0.176  Sum_probs=123.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCC--CceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+|+||+++||||||||+.....  ..+.|++|.+ ....... ....+.+++.|+.        .+|||||||+++
T Consensus        33 ~~~CgG~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~-~~~~~~~-g~~~~~~i~~~~~--------~~DIALLkL~~~  102 (268)
T 1wcz_A           33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAI-NQDNYPN-GGFTAEQITKYSG--------EGDLAIVKFSPN  102 (268)
T ss_dssp             EEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCC-BTTBCTT-CCEEEEEEEECSS--------SSCCEEEEECCC
T ss_pred             CEEEEEEEEECCEEEEChhhCCCccCCcceEEEEeccc-CcccccC-CcEEEEEEecCCC--------CCcEEEEEecCc
Confidence            58999999999999999999965322  3478888876 2221111 2345777777752        379999999999


Q ss_pred             c---ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCc
Q psy3170         357 V---EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK  432 (525)
Q Consensus       357 ~---~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~  432 (525)
                      +   .|+..++|+||+... ...+..++++|||....      ..++......+..         +...++|.     +.
T Consensus       103 ~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~------~~~~~~~~g~i~~---------~~~~~i~~-----~~  162 (268)
T 1wcz_A          103 EQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP------VATMWESKGKITY---------LKGEAMQY-----DL  162 (268)
T ss_dssp             TTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSS------TTCEEEEEEEEEE---------EETTEEEE-----SB
T ss_pred             ccccccccccceeecccccccCCCCEEEEEECCCCCC------CceEEeecceEEe---------eCCCeEEE-----ec
Confidence            7   467789999998653 45688999999996432      1233333332221         12346665     35


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      ++|.|||||||++.     .++|+||+|||..|+.  .+.+|+ +..|++||+++|...
T Consensus       163 ~~c~GdSGGPLv~~-----~g~lvGIvS~G~~~~~--~~~~~~-~~~~~~wI~~~i~~~  213 (268)
T 1wcz_A          163 STTGGNSGSPVFNE-----KNEVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQNIEDI  213 (268)
T ss_dssp             CCCTTCTTCEEECT-----TSCEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHHCTTC
T ss_pred             ccCCCCccCeEEcc-----CCEEEEEEeCCccCCc--ceeEEc-CHHHHHHHHHHHHhc
Confidence            79999999999852     3569999999988863  255554 688999999888544

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.93  E-value=4.2e-26  Score=218.98  Aligned_cols=178  Identities=16%  Similarity=0.188  Sum_probs=123.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCC--CceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+|+||+++||||||||+.....  ..+.|++|.. ....... ....+.+++.|+.        .+|||||||+++
T Consensus        33 ~~~C~G~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~-~~~~~~~-g~~~~~~i~~~~~--------~~DIALLkL~~~  102 (274)
T 2o8l_A           33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAI-NQDNYPN-GGFTAEQITKYSG--------EGDLAIVKFSPN  102 (274)
T ss_dssp             EEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCC-BTTBCTT-CCEEEEEEEECSS--------SSCCEEEEECCC
T ss_pred             CEEEEEEEEECCEEEEChhhCcccCCCcceEEEEeccc-CcccccC-ccEEEEEEEeCCC--------CCcEEEEEecCc
Confidence            58999999999999999999965322  2477888866 2221112 2345778888762        379999999999


Q ss_pred             c---ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCc
Q psy3170         357 V---EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK  432 (525)
Q Consensus       357 ~---~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~  432 (525)
                      +   .|+..++|+||+... ...+..++++|||.....      .++......+..         +...++|.     +.
T Consensus       103 ~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~------~~~~~~~g~i~~---------~~~~~i~~-----~~  162 (274)
T 2o8l_A          103 EQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPV------ATMWESKGKITY---------LKGEAMQY-----DL  162 (274)
T ss_dssp             TTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSST------TCEEEEEEEEEE---------EETTEEEE-----SC
T ss_pred             ccccccccccccccccccccccCCCEEEEEECCCCCCC------ceEEecCceEEe---------cCCCeEEe-----Cc
Confidence            7   478899999998643 467889999999964321      122222222211         11345654     35


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccC
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      +.|.|||||||++.     +++|+||+|||..|+.  .+.+|+ +..|++||++.|....+.
T Consensus       163 ~~c~GdSGGPLv~~-----~g~lvGIvS~G~~~~~--~~~~~~-~~~~~~wI~~~i~~~~~~  216 (274)
T 2o8l_A          163 STTGGNSGSPVFNE-----KNEVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQNIEDINFA  216 (274)
T ss_dssp             CCCTTCTTCEEECT-----TSCEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHHCTTCEEC
T ss_pred             ccCCCCchhheecc-----CCeEEEEEeCcccCCC--CceEEe-cHHHHHHHHHHHhhhccc
Confidence            79999999999852     3569999999988863  245444 788999999988654333

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.92  E-value=4.1e-26  Score=209.41  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=109.7

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC---
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP---  356 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~---  356 (525)
                      ++|+|+||+++||||||||+.........++++.. .  .........+.+++.   |+.     .+|||||||+++   
T Consensus        22 ~~c~G~lI~~~~VLTaaHcv~~~~~~~~~v~v~~~-~--~~~~~~~~~~~~i~~---~~~-----~~DiAll~l~~~~~~   90 (200)
T 2w7s_A           22 VGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHS-S--KGKGGGNYDVKDIVE---YPG-----KEDLAIVHVHETSTE   90 (200)
T ss_dssp             TTEEEEEEETTEEEECHHHHHHHHHTTCCEEETCC-S--SSCCCCEECEEEEEE---CSS-----SSSCEEEEECSBCTT
T ss_pred             ceEEEEEEECCEEEEChhhcCCcccCCcEEEEEec-C--ccCCCcEEEEEEEec---CCC-----cceEEEEEECCCCCC
Confidence            45999999999999999998542111233455432 1  111222333555553   322     379999999985   


Q ss_pred             -cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 -VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 -~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                       +.|++.++|+||+. ....+..++++||+......    . .+...+.+++.  +       ...++|.     +.+.|
T Consensus        91 ~~~~~~~v~pi~l~~-~~~~g~~v~v~G~p~g~~~~----~-~~~~~~g~v~~--~-------~~~~~~~-----~~~~~  150 (200)
T 2w7s_A           91 GLNFNKNVSYTKFAD-GAKVKDRISVIGYPKGAQTK----Y-KMFESTGTINH--I-------SGTFMEF-----DAYAQ  150 (200)
T ss_dssp             SCBGGGSCCCCCBCC-CCCTTCEEEEEECTTHHHHT----S-CEEEEEEEEEE--E-------ETTEEEE-----CSCCC
T ss_pred             cccccccccceeccc-cCCCCCEEEEEECCCCCCCc----c-ceEEeEEEEEc--c-------CCCEEEE-----cceeC
Confidence             88889999999973 44678899999985321111    1 12333333332  1       1345665     24789


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCCCC-CCCCceE-EEEcCCchhhhccccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQCG-HANTPAI-YTRVSYYVPWIVHTVW  489 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~-~~~~p~v-~t~v~~~~~WI~~~i~  489 (525)
                      +|||||||++.     ++.|+||+||+..|+ ....+.+ |+  +.|++||+++|.
T Consensus       151 ~GdSGGPl~~~-----~g~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~wI~~~~~  199 (200)
T 2w7s_A          151 PGNSGSPVLNS-----KHELIGILYAGSGKDESEKNFGVYFT--PQLKEFIQNNIE  199 (200)
T ss_dssp             TTCTTCEEECT-----TSCEEEEEEEEC----CCCEEEEECC--HHHHHHHHHTSC
T ss_pred             CCCccCeEECc-----CCEEEEEEeccccCCCCccceeeecH--HHHHHHHHhhcc
Confidence            99999999852     246999999998774 2222355 55  889999999874

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.92  E-value=1.2e-25  Score=207.11  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC----
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP----  355 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~----  355 (525)
                      .+|+|+||+++||||||||+..... ...+.+...  . .........+.+++.|+.        .+|||||+|+.    
T Consensus        22 ~~c~G~lI~~~~VLTaaHcv~~~~~-~~~v~v~~~--~-~~~~~~~~~~~~i~~~~~--------~~DiAll~l~~~~~~   89 (204)
T 2vid_A           22 KSATGFVVGKNTILTNKHVSKNYKV-GDRITAHPN--S-DKGNGGIYSIKKIINYPG--------KEDVSVIQVEERAIE   89 (204)
T ss_dssp             SSCEEEEEETTEEEECHHHHTTCCT-TCEEEESCC--S-SSCCSCEEEEEEEEECSS--------SSCCEEEEECSEEEE
T ss_pred             eeEEEEEEECCEEEEChhHCCCccC-CceEEEEec--c-ccCCCcEEEeeEEecCCC--------CCeEEEEEEcCcccc
Confidence            3599999999999999999965321 223443211  1 111223344677776542        37999999995    


Q ss_pred             ----CcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCC
Q psy3170         356 ----PVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGG  431 (525)
Q Consensus       356 ----~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~  431 (525)
                          ++.|++.++|+||+. ....+..++++|||.....    ...+. .....+..         ....++|.     +
T Consensus        90 ~~~~~~~~~~~v~pi~l~~-~~~~g~~~~~~G~g~~~~~----~~~~~-~~~g~v~~---------~~~~~~~~-----~  149 (204)
T 2vid_A           90 RGPKGFNFNDNVTPFKYAA-GAKAGERIKVIGYPHPYKN----KYVLY-ESTGPVMS---------VEGSSIVY-----S  149 (204)
T ss_dssp             EETTEEEHHHHCCCCCBCS-CCCTTCEEEEEECCCCCC------CCCE-EEEEEEEE---------EETTEEEE-----C
T ss_pred             cccccccccccccccccCC-cCCCCCEEEEEeCCCCCCC----CcceE-eeccEEee---------ccCCeEEE-----e
Confidence                577778899999985 4567889999999974321    11121 11111111         12456776     3


Q ss_pred             cCCCcCCCCCcceeecCCCceeEEEEEEeecC---CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         432 KDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR---QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       432 ~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~---~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .+.|.|||||||+..     .++|+||+|++.   .|...++ .+|.. +.|.+||+++|.
T Consensus       150 ~~~~~GdSGGPl~~~-----~g~lvGI~s~g~~~~~~~~~~~-~~~~~-~~~~~wI~~~~~  203 (204)
T 2vid_A          150 AHTESGNSGSPVLNS-----NNELVGIHFASDVKNDDNRNAY-GVYFT-PEIKKFIAENID  203 (204)
T ss_dssp             CCCCGGGTTCEEECT-----TSCEEEEEEEECC---CCCCEE-EECCC-HHHHHHHHHHSC
T ss_pred             cccCCCCccCcEECC-----CCeEEEEEecCccCCCcccccc-eeEeC-HHHHHHHHhhcC
Confidence            479999999999852     457999999996   3553333 44333 889999999874

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.92  E-value=7.5e-26  Score=214.68  Aligned_cols=174  Identities=16%  Similarity=0.170  Sum_probs=112.4

Q ss_pred             ceeEeEEEEEeC------CEEEecCCCCCCC--CCCceEEEEEEEeeccccc------------ccceEEEEEEEeCCCC
Q psy3170         278 VKWFCGGSLISP------NYVMTAAHCITSP--LGKPRYVRFGLITKLSYSV------------TDNIHRVMQNILHPNY  337 (525)
Q Consensus       278 ~~~~C~GtLIs~------~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~~------------~~~~~~v~~i~~hp~y  337 (525)
                      ..++|+|+||++      +||||||||+...  ....+.|+++.. ......            ...+..+..+++||. 
T Consensus        32 g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~-~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~~-  109 (268)
T 1arb_A           32 GTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQ-NSTCRAPNTPASGANGDGSMSQTQSGSTVKATY-  109 (268)
T ss_dssp             TEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCC-CSSCCCTTSGGGGSCCCCCCCCEEECEEEEEEE-
T ss_pred             CccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCC-CCccccccccccccccCCcceEEeccceEecCC-
Confidence            368999999998      6999999998642  123456666543 111100            011233667788883 


Q ss_pred             CCCCCCcccceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCc-c-----cccceEEEEEeeChhhh
Q psy3170         338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTK-E-----SLRLMKVVLDIINNDTC  411 (525)
Q Consensus       338 ~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~-~-----~~~l~~~~v~~~~~~~C  411 (525)
                            ..||||||||++|+.                .+..++++|||.+...... .     ...++++.+...+..  
T Consensus       110 ------~~nDIALLrL~~~v~----------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~~~~--  165 (268)
T 1arb_A          110 ------ATSDFTLLELNNAAN----------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTS--  165 (268)
T ss_dssp             ------TTTTEEEEEESSCCC----------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCE--
T ss_pred             ------CCCceEEEEecCCCC----------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeeccccc--
Confidence                  237999999999752                1335788999988654311 0     123444444333211  


Q ss_pred             hcccC-CCCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCC--CCceEEEEcCCchh
Q psy3170         412 SKQET-TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHA--NTPAIYTRVSYYVP  482 (525)
Q Consensus       412 ~~~~~-~~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~--~~p~v~t~v~~~~~  482 (525)
                      ...+. .+.+.|+|++...+..++|.|||||||++.     .++|+||+|||. .|+..  +.|++||||+.|.+
T Consensus       166 ~~~~~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~-----~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          166 FVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSP-----EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             EECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECT-----TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             cccccccccCCeEEEeeecCCCCCccCcccCCcEee-----CCEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            01122 245789999743112379999999999862     356999999996 79865  38999999987643

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.92  E-value=5.1e-25  Score=208.26  Aligned_cols=173  Identities=18%  Similarity=0.196  Sum_probs=119.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEE--EEEeecccc---cccceEEEEEEEeCCCCCCCCCCcccceEEEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYS---VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI  353 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~--g~~~~~~~~---~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L  353 (525)
                      .++|+|+||+++||||||||+.........|++  |... ....   .......+..+..|| |+     ..+|||||+|
T Consensus        54 ~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~~~~G~~~-~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~DiAll~l  126 (242)
T 1agj_A           54 QTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINT-DDNGNTETPYGEYEVKEILQEP-FG-----AGVDLALIRL  126 (242)
T ss_dssp             TEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEE-CTTSCEECTTCCEEEEEEESCT-TC-----TTSCCEEEEE
T ss_pred             CccEEEEEEeCCEEEEChhhcccCCCCceEEEEecCccc-cccccccccCCceeEEEEEeCC-CC-----CCCcEEEEEE
Confidence            478999999999999999999754332344555  5441 1100   001234477888898 74     2489999999


Q ss_pred             CCCcc---cCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCC
Q psy3170         354 APPVE---FSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMA  429 (525)
Q Consensus       354 ~~~~~---~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~  429 (525)
                      +.|+.   |++.++|+||+... ...+..++++|||.....     ..++...+.+.+..           ..++.    
T Consensus       127 ~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~-----~~l~~~~~~~~~~~-----------~~~~~----  186 (242)
T 1agj_A          127 KPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKV-----NQMHRSEIELTTLS-----------RGLRY----  186 (242)
T ss_dssp             CCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTST-----TCCEEEEEEECCGG-----------GSEEE----
T ss_pred             cCCCccccccccccceecCccccCCCCCEEEEEeCCCCCCC-----ccceeeeeeEecCC-----------ceEEE----
Confidence            99964   56789999998643 457889999999975432     24666666665422           12332    


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCC-CCCCceEEEEcCCchhhh
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG-HANTPAIYTRVSYYVPWI  484 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~-~~~~p~v~t~v~~~~~WI  484 (525)
                       ..++|+|||||||++.     .+.|+||+|||..|. ......+.+.|.....|+
T Consensus       187 -~~~~c~GdSGGPl~~~-----~g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~  236 (242)
T 1agj_A          187 -YGFTVPGNSGSGIFNS-----NGELVGIHSSKVSHLDREHQINYGVGIGNYVKRI  236 (242)
T ss_dssp             -ECCCCGGGTTCEEECT-----TSEEEEEEEEEEECSSTTCEEEEEEECCHHHHHH
T ss_pred             -eCCcCCCCCchHhccc-----CCEEEEEEeccccccCcCCCceeeEEehHHHHHH
Confidence             1368999999999852     357999999998886 334567788887555544

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=99.90  E-value=2.4e-23  Score=196.18  Aligned_cols=170  Identities=21%  Similarity=0.268  Sum_probs=131.3

Q ss_pred             ceeeeccCcccC---CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeee
Q psy3170           2 VNNHAAHCITSP---LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC   78 (525)
Q Consensus         2 ~~lTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pic   78 (525)
                      .|||||||+...   ....+.|++|.+++...+...+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||
T Consensus        39 ~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~pic  116 (237)
T 2f91_A           39 YAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYN--LLDNDISLLKLSGSLTFNDNVAPIA  116 (237)
T ss_dssp             EEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCB
T ss_pred             EEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEEEEEECCCCCCC--CCCCcEEEEEECCCcccCCceeecc
Confidence            489999999764   34678999999887655555688999999999999865  6789999999999999999999999


Q ss_pred             cCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          79 LNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        79 L~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ||......+..|+++|||.+..++  ..+..++.+.+.+++...|...+..   ......|+|++...   .....|.++
T Consensus       117 Lp~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~~Ca~~~~---~~~~~C~GD  188 (237)
T 2f91_A          117 LPEQGHTATGDVIVTGWGTTSEGG--NTPDVLQKVTVPLVSDEDCRADYGA---DEILDSMICAGVPE---GGKDSCQGD  188 (237)
T ss_dssp             CCCTTCCCCSEEEEEESCCSSTTC--CCCSBCEEEEEEEECHHHHHHHHCT---TTSCTTEEEECCTT---CCCBCCTTC
T ss_pred             CCCCCCCCCCcEEEEECCcCCCCC--CccceeeEEEEeEcCHHHhhhhhCC---CCcCCCeEEEecCC---CCCCCCCCc
Confidence            998766778889999999987554  3567889999999999999775532   12456788887432   123568877


Q ss_pred             hhhcccCCccccc----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+..    .+.|.+++. ..|+.
T Consensus       189 S----GgPL~~~~~~~~~l~Gi~S~g-~~C~~  215 (237)
T 2f91_A          189 S----GGPLAASDTGSTYLAGIVSWG-YGCAR  215 (237)
T ss_dssp             T----TCEEEECTTSSCEEEEEEEEE-SSSSC
T ss_pred             C----CCCeEEecCCCEEEEEEEEec-CCCCC
Confidence            6    67776654    356766765 45754

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=99.90  E-value=1.9e-23  Score=195.80  Aligned_cols=170  Identities=15%  Similarity=0.215  Sum_probs=132.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.|++|.+++...+...+.+.|.++++||+|+..  +..||||||||++|+.++++|+|||||.
T Consensus        35 ~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIAll~L~~~~~~~~~v~pi~l~~  112 (228)
T 2xw9_A           35 WVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD--TIDHDLLLLQLSEKATLGPAVRPLPWQR  112 (228)
T ss_dssp             EEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTT--CCTTCCEEEEESSCCCCBTTBCCCCBCC
T ss_pred             EEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeCCCCCCC--CCCCcEEEEEeCCCcccCCCeeecccCC
Confidence            48999999976555679999999887666656788999999999999865  6789999999999999999999999997


Q ss_pred             C--CCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 A--HNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~--~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      .  ....+..|+++|||.+...+  ..+..++...+.+++...|...+...  ......++|++.     .....|.+++
T Consensus       113 ~~~~~~~g~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~-----~~~~~C~GDs  183 (228)
T 2xw9_A          113 VDRDVAPGTLCDVAGWGIVNHAG--RRPDSLQHVLLPVLDRATCNRRTHHD--GAITERLMCAES-----NRRDSCKGDA  183 (228)
T ss_dssp             SCCCCCTTC-CEEEESSCCSTTC--CCCSBCEEEECCEECHHHHTSTTTTT--TCCCTTEEEECC-----SSCBCCTTCT
T ss_pred             cccCCCCCCEEEEEEecccCCCC--CCCchheEEEEEEcChhHhcCccccC--CcccCCEEecCC-----CCCccCCCCC
Confidence            4  34567889999999987554  34677888999999999998765421  134567888864     2345788776


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...+.|.+++....|+.
T Consensus       184 ----GgPL~~~~~l~Gi~s~g~~~C~~  206 (228)
T 2xw9_A          184 ----GGPLVCGGVLEGVVTSGSRVCGN  206 (228)
T ss_dssp             ----TCEEEETTEEEEEECCSCCCSSC
T ss_pred             ----cccEEECCEEEEEEeecCCcCCC
Confidence                78887766667777766556864

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=99.90  E-value=2.1e-23  Score=194.44  Aligned_cols=165  Identities=21%  Similarity=0.240  Sum_probs=131.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        34 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picL~~  107 (222)
T 1hj8_A           34 WVVSAAHCYK----SRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSY--NIDNDIMLIKLSKPATLNTYVQPVALPT  107 (222)
T ss_dssp             EEEECGGGCC----SSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCSSSCCCCBCCS
T ss_pred             EEEECHHhcC----CCeEEEEcccccccCCCCcEEEEEEEEEECCCCCCC--CCCCcEEEEEECCcccCCCceeccCCCC
Confidence            4899999995    457899999887665566788999999999999865  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+....  ..+..++.+.+.+++...|...+..    .....|+|++...   .....|.+++  
T Consensus       108 ~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDS--  176 (222)
T 1hj8_A          108 SCAPAGTMCTVSGWGNTMSST--ADSNKLQCLNIPILSYSDCNNSYPG----MITNAMFCAGYLE---GGKDSCQGDS--  176 (222)
T ss_dssp             SCCCTTCEEEEEESSCCCCSS--CCTTBCEEEEEEBCCHHHHHHHSTT----CCCTTEEEESCTT---SSCBCCTTCT--
T ss_pred             CCCCCCCEEEEEECCCCCCCC--CCCceeEEEEEEEcCHHHhhhhccC----CCCCCeEEeccCC---CCCccCCCCc--
Confidence            776778899999999986543  3567888999999999999776542    3456788887521   1245788776  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...+.|.+++. ..|+.
T Consensus       177 --GgPL~~~~~l~Gi~S~g-~~C~~  198 (222)
T 1hj8_A          177 --GGPVVCNGELQGVVSWG-YGCAE  198 (222)
T ss_dssp             --TCEEEETTEEEEEEEEC-SSSSC
T ss_pred             --ccceEECCEEEEEEeec-CCCCC
Confidence              78888776677777775 46864

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=99.90  E-value=2.2e-23  Score=194.50  Aligned_cols=166  Identities=22%  Similarity=0.307  Sum_probs=133.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  +..||||||||++|+.|+++|+|||||.
T Consensus        35 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIAll~L~~~~~~~~~v~pi~l~~  108 (223)
T 1lo6_A           35 WVLTAAHCKK----PNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAA--SHDQDIMLLRLARPAKLSELIQPLPLER  108 (223)
T ss_dssp             EEEECGGGCC----TTCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCCBCC
T ss_pred             EEEECccCCC----CCeEEEEcceecCCCCCCcEEEEEEEEEECCCCCCC--CCcCeEEEEEECCcccCCCceeecccCC
Confidence            4899999985    457899999888666666788999999999999865  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+. .+  ..+..++...+.+++...|...+..    .....|+|++...   .....|++++  
T Consensus       109 ~~~~~~~~~~v~GwG~~~-~~--~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDs--  176 (223)
T 1lo6_A          109 DCSANTTSCHILGWGKTA-DG--DFPDTIQCAYIHLVSREECEHAYPG----QITQNMLCAGDEK---YGKDSCQGDS--  176 (223)
T ss_dssp             CTTCCCCEEEEEESSCCT-TS--SCCSBCEEEEEEEECHHHHHHHSTT----TCCTTEEEEECTT---TCCBCCTTTT--
T ss_pred             CCCCCCCEEEEEEECCCC-CC--CcCceeeEEEEEEeCHHHhhhhhCC----CCCCCeEEeecCC---CCCeeccccC--
Confidence            777778899999999986 22  3567888999999999999776543    3466788887532   1245788876  


Q ss_pred             cccCCcccccccccceeEeeccccCC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                        ++|+.+...+.|.+++....|+..
T Consensus       177 --GgPL~~~~~l~Gi~S~g~~~C~~~  200 (223)
T 1lo6_A          177 --GGPLVCGDHLRGLVSWGNIPCGSK  200 (223)
T ss_dssp             --TCEEEETTEEEEEEEECCSSCCCS
T ss_pred             --CCcEEeCCEEEEEEeeCCCCCCCC
Confidence              788887767778888865678643

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.90  E-value=2.8e-23  Score=193.73  Aligned_cols=166  Identities=18%  Similarity=0.255  Sum_probs=131.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        34 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picL~~  107 (223)
T 3mfj_A           34 WVVSAAHCYK----SGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPT  107 (223)
T ss_dssp             EEEECGGGCC----SSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCBCCS
T ss_pred             EEEEhHHhcC----CCcEEEECCceecccCCCcEEEEeeEEEECCCCCCC--CCCCCEEEEEeCCCcccCCcEeeeECCC
Confidence            4899999993    568899999887655566788999999999999865  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+..... ..+..++.+.+.+++...|...+..    .....|+|++...   .....|++++  
T Consensus       108 ~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDS--  177 (223)
T 3mfj_A          108 SCASAGTQCLISGWGNTKSSGT-SYPDVLKCLKAPILSDSSCKSAYPG----QITSNMFCAGYLE---GGKDSCQGDS--  177 (223)
T ss_dssp             SCCCTTCEEEEEESSCCCSSSC-CCCSSCEEEEEEBCCHHHHHHHSTT----TCCTTEEEESCTT---SSCBCCTTCT--
T ss_pred             CCCCCCCEEEEEeeeccCCCCC-cccchheEEEEEEeCHHHhhhhhcC----cCCCCEEEccCCC---CCCCcCCCCc--
Confidence            7777788999999999864332 3567889999999999999876532    3456788887521   1245788776  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...+.|.+++. ..|+.
T Consensus       178 --GgPL~~~~~l~GI~S~g-~~C~~  199 (223)
T 3mfj_A          178 --GGPVVCSGKLQGIVSWG-SGCAQ  199 (223)
T ss_dssp             --TCEEEETTEEEEEEEEC-SSSSB
T ss_pred             --ccceEECCEEEEEEEEC-CCCCC
Confidence              78888766677877775 46753

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=99.90  E-value=2.9e-23  Score=193.98  Aligned_cols=168  Identities=21%  Similarity=0.290  Sum_probs=131.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCC-CCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-TTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y-~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+| +.......||||||||++|+.|+++|+|||||
T Consensus        35 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~  110 (225)
T 1npm_A           35 WVLTAAHCKK----QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA  110 (225)
T ss_dssp             EEEECGGGCC----SSCEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEEC
T ss_pred             EEEEhHHcCC----CCceEEEeeeEcCCCCCCcEEEEEEEEEECCCCCCCCccCccccEEEEeeCCcccCCCceeceECC
Confidence            4899999984    457899999887665566788999999999999 43213568999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+..... ..+..++.+.+.+++...|...+..    .....|+|++...    ....|+.++ 
T Consensus       111 ~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~----~~~~C~GDS-  180 (225)
T 1npm_A          111 NLCPKVGQKCIISGWGTVTSPQE-NFPNTLNCAEVKIYSQNKCERAYPG----KITEGMVCAGSSN----GADTCQGDS-  180 (225)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEECCHHHHHHHSTT----TCCTTEEEEECTT----CCBCCTTCT-
T ss_pred             CCCCCCCCEEEEEeCCcccCCCC-CCCccceEeEEeeecHHHhhHHhCC----CCCCCEEeecCCC----CCeecCCCC-
Confidence            87777788999999998743321 3567889999999999999876643    3456788887532    245788876 


Q ss_pred             hcccCCcccccccccceeEeeccccC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                         ++|+.+...+.|.+++....|+.
T Consensus       181 ---GgPL~~~~~l~GI~S~g~~~C~~  203 (225)
T 1npm_A          181 ---GGPLVCDGMLQGITSWGSDPCGK  203 (225)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSSCB
T ss_pred             ---CchheECCEEEEEEEeCCCCCCC
Confidence               78888777777877876567864

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=99.90  E-value=3.1e-23  Score=194.21  Aligned_cols=168  Identities=23%  Similarity=0.275  Sum_probs=133.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.|++|.+++.......+.+.|+++++||+|+..  .+.||||||||++|+.|+++|+|||||.
T Consensus        36 ~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp~  111 (228)
T 1fxy_A           36 YILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLKTPITFRMNVAPASLPT  111 (228)
T ss_dssp             EEEECGGGTTS--CSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCCCCS
T ss_pred             EEEECHHHCCC--CCcEEEEECccCccccCCCcEEEEEEEEEECCCCCCC--CCcCcEEEEEECCcccCCCceeccCCCC
Confidence            48999999954  3678999999887655566778999999999999875  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+...+. ..+..++.+.+.+++...|...+..    .....|+|++...   .....|.+++  
T Consensus       112 ~~~~~~~~~~v~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDS--  181 (228)
T 1fxy_A          112 APPATGTKCLISGWGNTASSGA-DYPDELQCLDAPVLSQAKCEASYPG----KITSNMFCVGFLE---GGKDSCQGDS--  181 (228)
T ss_dssp             SCCCTTCEEEEEESSCCCSSSC-CCCSSCEEEEEEBCCHHHHHHHSTT----TCCTTEEEESCTT---CSCBCCTTCT--
T ss_pred             CCCCCCCEEEEEecCccCCCCC-CCCccceEEEEEEeCHHHhHhhcCC----CCCCCEEEeccCC---CCCccccCcc--
Confidence            7777788999999999865442 2567889999999999999876532    3456788887532   1245788876  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...+.|.+++. ..|+.
T Consensus       182 --GgPL~~~~~l~Gi~S~g-~~C~~  203 (228)
T 1fxy_A          182 --GGPVVCNGQLQGVVSWG-DGCAQ  203 (228)
T ss_dssp             --TCEEEETTEEEEEEEEC-SSSSB
T ss_pred             --ccceEECCEEEEEEEEC-CCCCC
Confidence              78888776777877775 46753

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=99.90  E-value=4e-23  Score=193.33  Aligned_cols=166  Identities=19%  Similarity=0.291  Sum_probs=132.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccC-CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSY-SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.    ..+.|++|.+++... +...+.+.|.++++||+|+..  ...||||||||++|+.++++|+|||||
T Consensus        36 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~~v~~~~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~pi~l~  109 (227)
T 2psx_A           36 WLLTAAHCRK----KVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHP--GHSNDLMLIKLNRRIRPTKDVRPINVS  109 (227)
T ss_dssp             EEEECGGGCC----SSCEEEESCCBSSCCCCTTCEEEEEEEEEECTTCCSS--SCTTCCEEEEESSCCCCCSSSCCCCBC
T ss_pred             EEEEhHHcCC----CCcEEEEeeeecccCCCCCcEEEEEEEEEeCCCCCCC--CCCCCEEEEEeCCCCCCCCceeeeECC
Confidence            4899999985    357899999887544 345678999999999999864  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+..... ..+..++.+.+.+.+...|...+..    .....|+|++..    .....|++++ 
T Consensus       110 ~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~~----~~~~~~~Ca~~~----~~~~~C~GDS-  179 (227)
T 2psx_A          110 SHCPSAGTKCLVSGWGTTKSPQV-HFPKVLQCLNISVLSQKRCEDAYPR----QIDDTMFCAGDK----AGRDSCQGDS-  179 (227)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEBCCHHHHHHHSTT----TCCTTEEEECCS----TTCBCCTTCT-
T ss_pred             CCCCCCCCEEEEEeCcccCCCCC-CCCchheEEEEEecCHhHhhhhcCC----CCCCCEEcccCC----CCCccCCCCC-
Confidence            77667788999999999865432 3567889999999999999876543    356678888742    2245788876 


Q ss_pred             hcccCCcccccccccceeEeeccccC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                         ++|+.+...+.|.+++....|+.
T Consensus       180 ---GgPL~~~~~l~Gi~S~g~~~C~~  202 (227)
T 2psx_A          180 ---GGPVVCNGSLQGLVSWGDYPCAR  202 (227)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSTTC
T ss_pred             ---CcceeeCCEEEEEEeecCCCCCC
Confidence               78888777778888887567864

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=99.89  E-value=5.9e-23  Score=193.31  Aligned_cols=169  Identities=22%  Similarity=0.194  Sum_probs=132.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC---------CCCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG---------TSQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~---------~~~~nDIALl~L~~~v~~~~   72 (525)
                      .|||||||+.    ..+.|++|.+++...+...+.+.|+++++||+|+...         ....||||||||++|+.+++
T Consensus        33 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~  108 (235)
T 1ton_A           33 WVITAAHCYS----NNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITG  108 (235)
T ss_dssp             EEEECGGGCC----SCCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCS
T ss_pred             EEEEcHHhCC----CCcEEEeCcccccCCCCcceEEEEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccccCC
Confidence            4899999994    4578999998876555567789999999999997610         25679999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +|+|||||......+..|+++|||.+..... ..+..++.+.+.+.+...|...+..    .....|+|++...   ...
T Consensus       109 ~v~picL~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~  180 (235)
T 1ton_A          109 GVKVIDLPTKEPKVGSTCLASGWGSTNPSEM-VVSHDLQCVNIHLLSNEKCIETYKD----NVTDVMLCAGEME---GGK  180 (235)
T ss_dssp             SCCCCCCCCSCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEEECGGGCGGGGST----TGGGGEEEEECTT---CSC
T ss_pred             cceeeeCCCCCCCCCCEEEEEecCCCCCCCC-ccCccceEEEEEEeCHHHHHHHhcC----cCCCCeEeeccCC---CCC
Confidence            9999999987777788999999999865432 3567889999999999999876643    3456788887521   123


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeeccccC
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                      ..|.+++    ++|+.+...+.|.+++....|+.
T Consensus       181 ~~C~GDS----GgPL~~~~~l~Gi~S~g~~~C~~  210 (235)
T 1ton_A          181 DTCAGDS----GGPLICDGVLQGITSGGATPCAK  210 (235)
T ss_dssp             BCCTTCT----TCEEEETTEEEEEECCCCSSCSC
T ss_pred             cCCCCCC----ccccEECCEEEEEEeeCCCCCCC
Confidence            5788876    78887766677777776566864

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=99.89  E-value=5.4e-23  Score=193.38  Aligned_cols=173  Identities=20%  Similarity=0.240  Sum_probs=132.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..   ..+.|++|.+++...+...+.+.|+++++||+|+..  +..||||||||++|+.++++|+|||||.
T Consensus        35 ~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  109 (234)
T 1orf_A           35 WVLTAAHCNLN---KRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPA--TREGDLKLLQLTEKAKINKYVTILHLPK  109 (234)
T ss_dssp             EEEECTTCCCC---TTCEEEESCSBSSSCCTTCEEECEEEEEECTTCCTT--TCTTCCEEEEESSCCCCSSSSCCCCCCS
T ss_pred             EEEEchhcCCC---CCceEEEeccccCcCCCceEEEEEEEEEcCCCCCCC--CCCCCEEEEEECCcCccCCCeeeeecCC
Confidence            48999999864   457899999887666666788999999999999865  6789999999999999999999999997


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccc--ccccccccccccceeeccCCcccCCchhhhch
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGV--RYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      ...  ..+..|+++|||.+..++  ..+..++.+.+.+++...|..  .+.  .-......|+|++...   .....|++
T Consensus       110 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~~Ca~~~~---~~~~~C~G  182 (234)
T 1orf_A          110 KGDDVKPGTMCQVAGWGRTHNSA--SWSDTLREVEITIIDRKVCNDRNHYN--FNPVIGMNMVCAGSLR---GGRDSCNG  182 (234)
T ss_dssp             SCCCCCTTCEEEEEESSCSSSSS--CCCSBCEEEEEEEECHHHHTSTTTTT--TTTCCCTTEEEEECSS---CCCBCCTT
T ss_pred             CcCCCCCCCEEEEEECCcCCCCC--CccccceEeEEEeeCHHHcCCccccc--cCCccCCCEEEecCCC---CCCcCCCC
Confidence            554  567889999999987544  356788999999999999973  231  1112333788887531   12457888


Q ss_pred             hhhhcccCCcccccccccceeEee-ccccCCCCC
Q psy3170         158 YSKIQDESPIALAPALVGGVRYVR-TQCDILAMP  190 (525)
Q Consensus       158 ~~~~~~~~~l~~~~~~~g~v~~~~-~~Cg~~~~~  190 (525)
                      ++    ++|+.+...+.|.+++.. ..|+....|
T Consensus       183 DS----GgPL~~~~~l~GI~S~g~~~~C~~~~~p  212 (234)
T 1orf_A          183 DS----GSPLLCEGVFRGVTSFGLENKCGDPRGP  212 (234)
T ss_dssp             CT----TCEEEETTEEEEEEEECCTTCTTCTTSC
T ss_pred             CC----CCeEEECCEEEEEEEEcCCCCCCCCCCC
Confidence            77    788887766778778764 368643333

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=99.89  E-value=7.7e-23  Score=191.39  Aligned_cols=163  Identities=21%  Similarity=0.287  Sum_probs=127.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..    .+.|++|.+++...+...+.+.|+++++||+|+..  ++.||||||||++|+.|+++|+|||||.
T Consensus        38 ~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  111 (227)
T 1euf_A           38 FVLTAAHCLGS----SINVTLGAHNIMERERTQQVIPVRRPIPHPDYNDE--TLANDIMLLKLTRKADITDKVSPINLPR  111 (227)
T ss_dssp             EEEECGGGCCE----EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCCSSCCCCCCCC
T ss_pred             EEEECHHHCCC----CcEEEEcccccCCCCCccEEEEEEEEEeCCCCCCC--CCcCceEEEEECCcCcCCCceeccCCCC
Confidence            48999999953    58899999988666666788999999999999865  6789999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+..+.  ..+..++.+.+.+.+...|...+..    .....++|++...+   ....|++++
T Consensus       112 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~i~~~~~C~~~~~~----~~~~~~~Ca~~~~~---~~~~~~GDs  182 (227)
T 1euf_A          112 SLAEVKPGMMCSVAGWGRLGVNM--PSTDKLQEVDLEVQSEEKCIARFKN----YIPFTQICAGDPSK---RKNSFSGDS  182 (227)
T ss_dssp             TTCCCCTTCEEEEEESCBSSTTC--CBCSBCEEEEEEBCCTHHHHTTCTT----CCTTTEEEESCTTS---CCBCCTTCT
T ss_pred             ccccCCCCCEEEEEEEccCCCCC--CCchhheEeEeccccHHHhhHhhcC----cCCCcEEEccCCCC---CCcccccCC
Confidence            543  567889999999986544  3467889999999999999876543    24556888875321   123565555


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...+.|.+++.   |+.
T Consensus       183 ----GgPL~~~~~l~Gi~S~g---c~~  202 (227)
T 1euf_A          183 ----GGPLVCNGVAQGIVSYG---RND  202 (227)
T ss_dssp             ----TCEEEETTEEEEEEEEC---CTT
T ss_pred             ----CCceEECCEEEEEEEEe---CCC
Confidence                67887766677777775   753

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=99.89  E-value=7.2e-23  Score=191.64  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=128.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+    .+.|++|.+++...+...+.+.|+++++||+|+..  ++.||||||||++|+.++++|+|||||.
T Consensus        38 ~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  111 (227)
T 1iau_A           38 FVLTAAHCWGS----SINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPK--NFSNDIMLLQLERKAKRTRAVQPLRLPS  111 (227)
T ss_dssp             EEEECGGGCCS----EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEECHHhCCC----ceEEEEccccccCCCCccEEEEEEEEECCCCCCCC--CCCCCeEEEEECCcccCCCceecccCCC
Confidence            48999999953    58899999988766666788999999999999875  6789999999999999999999999997


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+...+  ..+..++.+.+.+.+...|...+...   .....++|++...   .....|++++
T Consensus       112 ~~~~~~~g~~~~v~GwG~~~~~~--~~~~~L~~~~~~i~~~~~C~~~~~~~---~~~~~~~Ca~~~~---~~~~~C~GDS  183 (227)
T 1iau_A          112 NKAQVKPGQTCSVAGWGQTAPLG--KHSHTLQEVKMTVQEDRKCESDLRHY---YDSTIELCVGDPE---IKKTSFKGDS  183 (227)
T ss_dssp             TTCCCCTTCEEEEEESSCSSSSS--CCCSBCEEEEEEBCCHHHHHHHTTTT---CCTTTEEEESCTT---SCCBCCTTCT
T ss_pred             CCCCCCCCCEEEEEEcccCCCCC--CcCceeeEeeeeeechHHhhhHhccc---cCCCcEEEeECCC---CCCeeeecCC
Confidence            554  567889999999986544  35678899999999999997755331   1233478877532   1245788776


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...+.|.+++.   |+.
T Consensus       184 ----GgPL~~~~~l~Gi~S~g---c~~  203 (227)
T 1iau_A          184 ----GGPLVCNKVAQGIVSYG---RNN  203 (227)
T ss_dssp             ----TSEEEETTEEEEEEEEE---CTT
T ss_pred             ----CchheEeeEEEEEEeEe---cCC
Confidence                78888766677877776   753

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=99.89  E-value=3.4e-23  Score=195.19  Aligned_cols=170  Identities=21%  Similarity=0.272  Sum_probs=133.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCC---------CCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGT---------SQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~---------~~~nDIALl~L~~~v~~~~   72 (525)
                      .|||||||+.    ..+.|++|.+++...+...+.+.|+++++||+|+....         .+.||||||||++|+.|++
T Consensus        35 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~  110 (237)
T 1ao5_A           35 WVLTAAHCYV----DQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITD  110 (237)
T ss_dssp             EEEECTTCCC----SSCEEEESCCBSSSCCSSCEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCS
T ss_pred             EEEECHHHCC----CCCEEEecccccccCCCCcEEEEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccccCC
Confidence            4899999994    45789999988765556677889999999999985411         2279999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +|+|||||......+..|+++|||.+.... ...+..++.+.+.+++...|...+..    .....|+|++..   ....
T Consensus       111 ~v~picL~~~~~~~~~~~~v~GwG~~~~~~-~~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~---~~~~  182 (237)
T 1ao5_A          111 VVKPIALPTKEPKPGSKCLASGWGSITPTR-WQKPDDLQCVFITLLPNENCAKVYLQ----KVTDVMLCAGEM---GGGK  182 (237)
T ss_dssp             SSCCCCCCCSCCCTTCEEEEEESCCSSCC--CCCCSBCEEEEEEEECHHHHHHHCSS----CCCTTEEEEECT---TCSC
T ss_pred             ceeCCCcCCCCCCCCCEEEEEECCccCCCC-CCCCCcccEEEEEecChhHhhhhhcc----cCCCCEEEEccC---CCCC
Confidence            999999998777778899999999986542 13567889999999999999876642    356678888732   1234


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeeccccCC
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                      ..|++++    ++|+.+...+.|.+++....|+..
T Consensus       183 ~~C~GDS----GgPL~~~~~l~Gi~S~g~~~C~~~  213 (237)
T 1ao5_A          183 DTCRDDS----GGPLICDGILQGTTSYGPVPCGKP  213 (237)
T ss_dssp             BCCTTCT----TCEEEETTEEEEEEEECCSSTTCT
T ss_pred             CCCCCCC----cceEEECCEEeEEEeEcCCCCCCC
Confidence            5788877    788887767788888875678643

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=99.89  E-value=8.6e-23  Score=190.45  Aligned_cols=169  Identities=18%  Similarity=0.296  Sum_probs=132.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccC-CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSY-SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.    ..+.|++|.+++... +...+.+.|.++++||+|+..  ...||||||||++|+.++++|+|||||
T Consensus        35 ~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~pi~l~  108 (223)
T 2bdg_A           35 WVLSAAHCFQ----NSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRP--LLANDLMLIKLDESVSESDTIRSISIA  108 (223)
T ss_dssp             EEEECGGGCC----SSEEEEESCSBSCGGGCTTCEEEEEEEEEECTTTTSS--TTCSCCEEEEESSCCCCCSSCCCCCBC
T ss_pred             EEEEhHHhCC----CCeEEEEeeeecCCCCCCCcEEEEEEEEEeCCCCCCC--CCcCcEEEEEECCcccCCCceecccCC
Confidence            4899999994    357899998876533 344678899999999999865  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+..+   ..+..++.+.+.+++...|...+..    .....|+|++...   .....|++++ 
T Consensus       109 ~~~~~~~~~~~v~GwG~~~~~---~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDs-  177 (223)
T 2bdg_A          109 SQCPTAGNSCLVSGWGLLANG---RMPTVLQCVNVSVVSEEVCSKLYDP----LYHPSMFCAGGGQ---DQKDSCNGDS-  177 (223)
T ss_dssp             SSCCCTTCEEEEEESCCCTTS---CCCSBCEEEEEEBCCHHHHHHHSTT----TCCTTEEEECCST---TCCBCCTTCT-
T ss_pred             CCCCCCCCEEEEEeCcccCCC---CCCCcceEEEEEEeCHHHhhhhhCC----CCCCCeEeccCCC---CCCCcCCCCC-
Confidence            877777889999999988654   3567889999999999999876543    2456788887521   1235788877 


Q ss_pred             hcccCCcccccccccceeEeeccccCCCCC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~~~~~  190 (525)
                         ++|+.+...+.|.+++....|+....|
T Consensus       178 ---GgPL~~~~~l~Gi~S~g~~~C~~~~~p  204 (223)
T 2bdg_A          178 ---GGPLICNGYLQGLVSFGKAPCGQVGVP  204 (223)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSTTCTTCC
T ss_pred             ---CchheEccEEEEEEEecCCCCCCCCCC
Confidence               788887777788888876678643333

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=99.89  E-value=1.3e-22  Score=191.64  Aligned_cols=169  Identities=21%  Similarity=0.299  Sum_probs=128.8

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCc--CceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY--HDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~--nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+..  ...+.|++|.+++...+...+.+.|+++++||+|+..  ...  ||||||||++|+.|+++|+||||
T Consensus        39 ~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~~~DIALl~L~~~v~~~~~v~picL  114 (241)
T 1bru_P           39 WVLTAAHCISS--SRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSN--QLSNGNDIALLKLASPVSLTDKIQLGCL  114 (241)
T ss_dssp             EEEECGGGCCT--TSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTT--CGGGCCCCEEEEESSCCCCCSSCCCCBC
T ss_pred             EEEEcHHhccc--CCceEEEEEcccccCCCCccEEEEEEEEEECCCCCCC--CCCCCCcEEEEEeCCCcccCCccCCccc
Confidence            48999999973  3678999999887666666788999999999999875  445  99999999999999999999999


Q ss_pred             CCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhch
Q psy3170          80 NRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        80 ~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      |...  ...+..|+++|||.+...+  ..+..++.+.+.+++...|...+...  ......|+|++..    .....|++
T Consensus       115 p~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~i~~~~~C~~~~~~~--~~~~~~~~Ca~~~----~~~~~C~G  186 (241)
T 1bru_P          115 PAAGTILPNNYVCYVTGWGRLQTNG--ASPDILQQGQLLVVDYATCSKPGWWG--STVKTNMICAGGD----GIISSCNG  186 (241)
T ss_dssp             CCTTCCCCTTCEEEEEESCCSSTTS--CCCSBCEEEEEEEECHHHHTSTTTTG--GGCCTTEEEECCS----SSSBCCTT
T ss_pred             CCCcCCCCCCCEEEEEEccccCCCC--CCCccceeCEEEEecHHHhCcccccC--CcCCCceEeecCC----CCCccCCC
Confidence            9754  3457789999999986544  35678899999999999997753211  1356678888742    12356887


Q ss_pred             hhhhcccCCccccc-----ccccceeEeec-cccC
Q psy3170         158 YSKIQDESPIALAP-----ALVGGVRYVRT-QCDI  186 (525)
Q Consensus       158 ~~~~~~~~~l~~~~-----~~~g~v~~~~~-~Cg~  186 (525)
                      ++    ++|+.+..     .+.|.+++... .|+.
T Consensus       187 DS----GgPL~~~~~~g~~~l~Gi~S~g~~~~C~~  217 (241)
T 1bru_P          187 DS----GGPLNCQGANGQWQVHGIVSFGSSLGCNY  217 (241)
T ss_dssp             CT----TCEEEEECTTSCEEEEEEEEECBTTBSSC
T ss_pred             CC----CCcEEEECCCCCEEEEEEEEEcCCCCCCC
Confidence            76    67776542     35677777643 5754

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=99.89  E-value=1.2e-22  Score=191.76  Aligned_cols=172  Identities=15%  Similarity=0.187  Sum_probs=132.0

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+... ....+.|++|.+++...+...+.+.|+++++||+|+..  ...||||||||++|+.++++|+|||||
T Consensus        37 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~pi~l~  114 (240)
T 1mza_A           37 WVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSD--PQSNDIMLVKLQTAAKLNKHVKMLHIR  114 (240)
T ss_dssp             EEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEECCCSSCS--SSSSCCEEEEESSCCCCBTTBCCCCBC
T ss_pred             EEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEeCCCccCC--CCCceEEEEEeCCCcccCCceeeeecC
Confidence            489999998642 34678999999887666566788999999999999865  678999999999999999999999999


Q ss_pred             C-CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccc--cccccccccccccceeeccCCcccCCchhhhch
Q psy3170          81 R-AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGG--VRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        81 ~-~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      . .....+..|+++|||.+..+.. ..+..++.+.+.+++...|.  ..+...  ......|+|++...   .....|++
T Consensus       115 ~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~~~~~--~~~~~~~~Ca~~~~---~~~~~C~G  188 (240)
T 1mza_A          115 SKTSLRSGTKCKVTGWGATDPDSL-RPSDTLREVTVTVLSRKLCNSQSYYNGD--PFITKDMVCAGDAK---GQKDSCKG  188 (240)
T ss_dssp             SSCCCCTTCEEEEEECCCSSTTCS-SCCSBCEEEEEEECCHHHHTSTTTTTTT--TCCCTTEEEEECTT---SCCCCCTT
T ss_pred             CcccCCCCCEEEEEeCCcCCCCCC-CccccceEeEEEEeCHHHcCCcceeCCC--CcCCCCeEeecCCC---CCCccCCC
Confidence            7 4456788899999999875442 25678899999999999997  333221  13456788887421   12457888


Q ss_pred             hhhhcccCCcccccccccceeEeeccccC
Q psy3170         158 YSKIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       158 ~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                      ++    ++|+.+...+.|.+++. ..|+.
T Consensus       189 DS----GGPL~~~~~l~Gi~S~g-~~C~~  212 (240)
T 1mza_A          189 DA----GGPLICKGVFHAIVSGG-HECGV  212 (240)
T ss_dssp             CT----TCEEEETTEEEEEECSS-CCSSC
T ss_pred             CC----CCeeEECCEEEEEEEEC-CCCCC
Confidence            77    78888766667766664 36864

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=99.89  E-value=7.9e-23  Score=192.70  Aligned_cols=170  Identities=21%  Similarity=0.256  Sum_probs=133.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCC---------CCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGT---------SQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~---------~~~nDIALl~L~~~v~~~~   72 (525)
                      .|||||||+.+    ...|++|.+++...+..++.+.|+++++||+|+....         ...||||||||++|+.|++
T Consensus        35 ~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~  110 (237)
T 2zch_P           35 WVLTAAHCIRN----KSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTD  110 (237)
T ss_dssp             EEEECGGGCCS----SCEEEESCSBSSSCCTTCEEEEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCS
T ss_pred             EEEEcHHhcCC----CceEEEecccccCCCCCcEEEEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCccCC
Confidence            48999999964    3579999988766666678899999999999986411         1268999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +|+|||||......+..|+++|||.+..+.. ..+..++.+.+.+.+...|...+..    .....|+|++...   ...
T Consensus       111 ~v~pi~Lp~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~  182 (237)
T 2zch_P          111 AVKVMDLPTQEPALGTTCYASGWGSIEPEEF-LTPKKLQCVDLHVISNDVCAQVHPQ----KVTKFMLCAGRWT---GGK  182 (237)
T ss_dssp             SCCCCCCCSSCCCTTCEEEEEESCCSSSSSC-CCCSBCEEEEEEEECHHHHHHHCSS----BCCTTEEEEECTT---CSC
T ss_pred             cEeeeECCCCCCCCCCEEEEEeCCccCCCCC-cCCcccEEeEEEEeCHHHhcccccC----CCCceEEeecCCC---CCC
Confidence            9999999987777788999999999875542 2367889999999999999775543    3456788887532   124


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeeccccCC
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                      ..|++++    ++|+.+...+.|.+++....|+..
T Consensus       183 ~~C~GDS----GgPL~~~~~l~Gi~S~g~~~C~~~  213 (237)
T 2zch_P          183 STCSGDS----GGPLVCNGVLQGITSWGSEPCALP  213 (237)
T ss_dssp             BCCTTCT----TCEEESSSSEEEEEEECCSSTTCT
T ss_pred             cccCCCc----cCeEEECCEEEEEEEeCcCCCCCC
Confidence            5788887    788888777888888876578643

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=99.89  E-value=8e-23  Score=190.79  Aligned_cols=166  Identities=20%  Similarity=0.239  Sum_probs=130.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.  +...+.+.|.++++||+|+..  +..||||||||++|+.|+++|+|||||.
T Consensus        35 ~VLTAAHC~~----~~~~v~~G~~~~~--~~~~~~~~v~~~~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picL~~  106 (224)
T 2qxi_A           35 WVLTAAHCKM----NEYTVHLGSDTLG--DRRAQRIKASKSFRHPGYSTQ--THVNDLMLVKLNSQARLSSMVKKVRLPS  106 (224)
T ss_dssp             EEEECGGGCC----SCEEEEESCSBTT--CTTSEEEEECEEEECTTCCTT--TCTTCCEEEECSSCCCCBTTBCCCCCCS
T ss_pred             EEEEhHHcCC----CCcEEEEeeeecC--CCccEEEEEEEEEECCCCCCC--CCcCcEEEEEeCCCCcCCCceeeEECCC
Confidence            4899999983    5689999988764  345678899999999999865  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+..... ..+..++.+.+.+++...|...+..    .....++|++...   .....|.+++  
T Consensus       107 ~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDS--  176 (224)
T 2qxi_A          107 RCEPPGTTCTVSGWGTTTSPDV-TFPSDLMCVDVKLISPQDCTKVYKD----LLENSMLCAGIPD---SKKNACNGDS--  176 (224)
T ss_dssp             SCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEEECHHHHHHHHGG----GCCTTEEEEECTT---CCCBCCTTCT--
T ss_pred             CCCCCCCEEEEEeCCccCCCCC-CCChhheEEEeeecCHHHhhHHhcC----cCCCCeEEecCCC---CCCccCCCCc--
Confidence            7767788999999998864321 3567788999999999999776532    3456788886421   1245788776  


Q ss_pred             cccCCcccccccccceeEeeccccCC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                        ++|+.+...+.|.+++....|+..
T Consensus       177 --GgPL~~~~~l~Gi~S~g~~~C~~~  200 (224)
T 2qxi_A          177 --GGPLVCRGTLQGLVSWGTFPCGQP  200 (224)
T ss_dssp             --TCEEEETTEEEEEEEECCSSSCCT
T ss_pred             --cccEEECCEEEEEEEeCCCCCCCC
Confidence              788887767788888875678643

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=99.88  E-value=7e-23  Score=193.08  Aligned_cols=167  Identities=19%  Similarity=0.246  Sum_probs=132.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCC-----------cCceEEEEeCCCccC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQ-----------YHDIALLKIAPPVEF   70 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~-----------~nDIALl~L~~~v~~   70 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  ..           .||||||||++|+.+
T Consensus        35 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~~~~~~~~~~~~DIALl~L~~~~~~  108 (237)
T 1gvz_A           35 WVLTAAHCMS----DDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLS--LLKKKYLRPYDDISHDLMLLRLAQPARI  108 (237)
T ss_dssp             EEEECGGGCC----SSCEEEESCSBTTSCCTTCEEECEEEEEECTTSCGG--GGGCSSCCTTSCCTTCCEEEEESSCCCC
T ss_pred             EEEEcHHhCC----CCCeEEEeecccccCCCCceEEEeeeEecCCccCcc--cccccccccccccCCceEEEEeCCCccc
Confidence            4899999984    568899999988766666788999999999999864  33           799999999999999


Q ss_pred             CCceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCC
Q psy3170          71 SETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGE  150 (525)
Q Consensus        71 ~~~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~  150 (525)
                      +++|+|||||......+..|+++|||.+.... ...+..++.+.+.+.+...|...+..    .....++|++...   .
T Consensus       109 ~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~-~~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~  180 (237)
T 1gvz_A          109 TDAVKILDLPTQEPKLGSTCYTSGWGLISTFT-NRGSGTLQCVELRLQSNEKCARAYPE----KMTEFVLCATHRD---D  180 (237)
T ss_dssp             BTTBCCCCCCSSCCCTTCEEEEEEEECSCTTT-CSEEEEEEEEEEEEECGGGGCSSCGG----GCCTTEEEEECSS---T
T ss_pred             CCcEeeeECCCCCCCCCCEEEEECCCcccCCC-CCCCCccEEEEEeEeChhHhhhhhhh----cCCCceEEEeeCC---C
Confidence            99999999998777778899999999874332 13567889999999999999876643    3566788887532   1


Q ss_pred             chhhhchhhhhcccCCcccccccccceeEeeccccC
Q psy3170         151 FPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       151 ~~~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                      ....|++++    ++|+.+...+.|.+++....|+.
T Consensus       181 ~~~~C~GDS----GgPL~~~~~l~GI~S~g~~~C~~  212 (237)
T 1gvz_A          181 SGSICLGDS----GGALICDGVFQGITSWGYSECAD  212 (237)
T ss_dssp             TCEECGGGT----TCEEEETTEEEEEECCCSSSCEE
T ss_pred             CCccCCCCc----cCcEeeCCEEEEEEEeCCCCCCC
Confidence            235798887    78888777777877776546863

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=99.88  E-value=2.4e-22  Score=189.74  Aligned_cols=171  Identities=19%  Similarity=0.254  Sum_probs=129.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|++|.+++...+...+.+.|+++++||+|+.......||||||||++|+.|+++|+|+|||.
T Consensus        39 ~VLTAAHC~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~  116 (240)
T 1gvk_B           39 WVMTAAHCVDRE--LTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPR  116 (240)
T ss_dssp             EEEECGGGGCSC--CCEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEECHHHCCCC--cceEEEECCeecccCCCcceEEEEEEEEECCCCCCCCCCCCCcEEEEEECCccccCCCccceecCC
Confidence            489999999653  678999999988666666788999999999999875222278999999999999999999999997


Q ss_pred             CC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ..  ...+..|+++|||.+..++  ..+..++.+.+.+++...|...+...  ......|+|++..    .....|++++
T Consensus       117 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~----~~~~~C~GDS  188 (240)
T 1gvk_B          117 AGTILANNSPCYITGWGLTRTNG--QLAQTLQQAYLPTVDYAICSSSSYWG--STVKNSMVCAGGD----GVRSGCQGDS  188 (240)
T ss_dssp             TTCCCCTTCCEEEEESCBSSTTC--CBCSBCEEEECCEECHHHHTSTTTTG--GGCCTTEEEECCS----SSCBCCTTCT
T ss_pred             CCCCCCCCCEEEEEecCcCCCCC--CcchhccEEEEEEEcHHHhccccccC--ccCCcceEeecCC----CCCcccCCCC
Confidence            54  3467889999999986544  35677888999999999997753211  1356678888742    1245688776


Q ss_pred             hhcccCCccc--cc--ccccceeEeec-cccC
Q psy3170         160 KIQDESPIAL--AP--ALVGGVRYVRT-QCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~--~~--~~~g~v~~~~~-~Cg~  186 (525)
                          ++|+.+  ..  .+.|.+++... .|+.
T Consensus       189 ----GgPL~~~~~g~~~l~Gi~S~g~~~~C~~  216 (240)
T 1gvk_B          189 ----GGPLHCLVNGQYAVHGVTSFVSRLGCNV  216 (240)
T ss_dssp             ----TCEEEEEETTEEEEEEEEEECBTTBSSC
T ss_pred             ----cCceEEEECCcEEEEEEEEEeCCCCCCC
Confidence                677765  22  45677777633 6764

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=99.88  E-value=1.3e-22  Score=191.37  Aligned_cols=168  Identities=20%  Similarity=0.273  Sum_probs=127.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.... ..+.|++|.+++..   .++.+.|+++++||+|+... .+.||||||||++|+.++++|+|||||.
T Consensus        35 ~VLTAAHC~~~~~-~~~~v~~G~~~~~~---~~~~~~v~~i~~Hp~y~~~~-~~~~DIALl~L~~~v~~~~~v~picLp~  109 (240)
T 2zgc_A           35 WVLTAAHCLAQRM-AQLRLVLGLHTLDS---PGLTFHIKAAIQHPRYKPVP-ALENDLALLQLDGKVKPSRTIRPLALPS  109 (240)
T ss_dssp             EEEECGGGGCSCG-GGEEEEESCSBSSS---CCEEEEEEEEEECTTCBCTT-SCBSCCEEEEESSCCCCCSSCCCCCCCC
T ss_pred             EEEEcHHhcCCCC-CCEEEEecccccCC---CCeEEEEEEEEECCCCCCCC-CCcccEEEEEeCCcccCCCceeeeEcCC
Confidence            4899999997642 36899999887643   34789999999999998641 2689999999999999999999999997


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccc--ccccccccccccceeeccCCcccCCchhhhch
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGV--RYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      ...  ..+..|+++|||.+..++  ..+..++.+.+.+.+...|..  .+..    .....|+|++...+   ....|++
T Consensus       110 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~~----~~~~~~~Ca~~~~~---~~~~C~G  180 (240)
T 2zgc_A          110 KRQVVAAGTRCSMAGWGLTHQGG--RLSRVLRELDLQVLDTRMCNNSRFWNG----SLSPSMVCLAADSK---DQAPCKG  180 (240)
T ss_dssp             TTCCCCTTCEEEEEECCBSSTTC--CBCSBCEEEEEEECCHHHHTSTTTTTT----CCCTTEEEEECSST---TCBCCTT
T ss_pred             CCCCCCCCCEEEEEECCcccCCC--CcCceeeeeeeeecCHHHhCCccccCC----CCCCceEeeccCCC---CCccCCC
Confidence            543  567889999999986544  356789999999999999976  3322    24567888764321   2356887


Q ss_pred             hhhhcccCCccccc--ccccceeEeeccccCC
Q psy3170         158 YSKIQDESPIALAP--ALVGGVRYVRTQCDIL  187 (525)
Q Consensus       158 ~~~~~~~~~l~~~~--~~~g~v~~~~~~Cg~~  187 (525)
                      ++    ++|+.+..  .+.|.+++....|+..
T Consensus       181 DS----GgPL~~~~~~~l~Gi~S~g~~~C~~~  208 (240)
T 2zgc_A          181 DS----GGPLVCGKGRVLAGVLSFSSRVCTDI  208 (240)
T ss_dssp             CT----TCEEEETTTTEEEEEECCCCSSTTCT
T ss_pred             Cc----cCeeEECCCCEEEEEEEECCCCCCCC
Confidence            76    77887655  4667777765678643

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=99.88  E-value=1.8e-22  Score=188.47  Aligned_cols=166  Identities=18%  Similarity=0.255  Sum_probs=132.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  +..||||||||++|+.++++++|||||.
T Consensus        34 ~VLTAAhC~~----~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~DIAll~L~~~~~~~~~v~pi~l~~  107 (223)
T 4i8h_A           34 WVVSAAHCYK----SGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPT  107 (223)
T ss_dssp             EEEECGGGCC----SSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCBCCS
T ss_pred             EEEecHHhCC----CCcEEEEccccccccCCCcEEEEEeEEEECcCCCCC--CCcCCEEEEEECCcCcCCCceeceECCC
Confidence            4899999985    368899999887666667788999999999999875  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+..... ..+..++...+.+++...|...+..    .....++|++...   .....|.+++  
T Consensus       108 ~~~~~~~~~~v~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~GDs--  177 (223)
T 4i8h_A          108 SCASAGTQCLISGWGNTKSSGT-SYPDVLKCLKAPILSDSSCKSAYPG----QITSNMFCAGYLE---GGKDSCQGDS--  177 (223)
T ss_dssp             SCCCTTCEEEEEESSCCCSSSC-CCCSSCEEEEEEBCCHHHHHHHSTT----TCCTTEEEESCTT---SSCBCCTTCT--
T ss_pred             CCCCCCCEEEEEecccccCCCC-CccccceEEEeeecCHHHHHHhhCC----CCCCCeEeccCCC---CCCccCCCCC--
Confidence            7777889999999999875442 4567899999999999999876543    3566788886422   1235688776  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...+.|.+++. ..|+.
T Consensus       178 --GgPl~~~~~l~Gi~S~g-~~c~~  199 (223)
T 4i8h_A          178 --GGPVVCSGKLQGIVSWG-SGCAQ  199 (223)
T ss_dssp             --TCEEEETTEEEEEEEEC-SSSSC
T ss_pred             --CCcEEECCEEEEEEEcC-CCCCC
Confidence              78888777777877775 34753

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=190.37  Aligned_cols=170  Identities=19%  Similarity=0.252  Sum_probs=133.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC---------CCCCcCceEEEEeCCCcc-CC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQYHDIALLKIAPPVE-FS   71 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~nDIALl~L~~~v~-~~   71 (525)
                      .|||||||+.    ..+.|++|.+++...+...+.+.|.++++||+|+..         ...+.||||||||++|+. ++
T Consensus        35 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~  110 (238)
T 1spj_A           35 WVLTAAHCIS----DNYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTIT  110 (238)
T ss_dssp             EEEECGGGCC----SSEEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSS
T ss_pred             EEEEcHHhCC----CCceEEEEeccccCCCCCceEEEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccC
Confidence            4899999995    357899999988666666788999999999999731         125679999999999998 99


Q ss_pred             CceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCc
Q psy3170          72 ETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEF  151 (525)
Q Consensus        72 ~~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~  151 (525)
                      ++|+|||||......+..|+++|||.+..... ..+..++.+.+.+++...|...+..    .....|+|++...   ..
T Consensus       111 ~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~  182 (238)
T 1spj_A          111 DAVKVVELPTEEPEVGSTCLASGWGSIEPENF-SFPDDLQCVDLKILPNDECKKAHVQ----KVTDFMLCVGHLE---GG  182 (238)
T ss_dssp             TTCCCCCCCSSCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEEECHHHHHHHCSS----CCCTTEEEEECTT---CS
T ss_pred             CceeeccCCCCCCCCCCEEEEEecCCCCCCCC-CCcCcccEEEEeecCHHHhhhhccC----CCCCCeEEeeCCC---CC
Confidence            99999999987777788999999999865442 3567889999999999999776543    2466788887532   12


Q ss_pred             hhhhchhhhhcccCCcccccccccceeEeeccccCC
Q psy3170         152 PHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       152 ~~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                      ...|.+++    ++|+.+...+.|.+++....|+..
T Consensus       183 ~~~C~GDS----GgPL~~~~~l~Gi~S~g~~~C~~~  214 (238)
T 1spj_A          183 KDTCVGDS----GGPLMCDGVLQGVTSWGYVPCGTP  214 (238)
T ss_dssp             SBCCTTCT----TCEEEETTEEEEEEEECCSSTTCT
T ss_pred             CCCCCCCC----CCcEEEcCEEEEEEEeCCCCCCCC
Confidence            45788877    788887777788888875678643

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=99.88  E-value=6.7e-23  Score=193.57  Aligned_cols=170  Identities=21%  Similarity=0.272  Sum_probs=117.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC---------CCCCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~nDIALl~L~~~v~~~~   72 (525)
                      .|||||||+.    ..+.|++|.+++...+...+.+.|+++++||+|+..         ...+.||||||||++|+.+++
T Consensus        38 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~  113 (240)
T 1sgf_A           38 WVLTAAHCYN----DKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITD  113 (240)
T ss_dssp             EEEECGGGCC----SCCEEEECC----C-CTTCEEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCS
T ss_pred             EEEECHHhCC----CCceEEeCCcccccCCCCceEEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCcCCC
Confidence            4899999995    357899999887655566788999999999999742         114579999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +|+|||||......+..|+++|||.+..... ..+..++.+.+.+++...|...+..    .....|+|++...   ...
T Consensus       114 ~v~picL~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~  185 (240)
T 1sgf_A          114 VVKPITLPTEEPKLGSTCLASGWGSTTPIKF-KYPDDLQCVNLKLLPNEDCDKAHEM----KVTDAMLCAGEMD---GGS  185 (240)
T ss_dssp             SCCCCCCCCSCCCTTCEEEEC-------C----------CEEEEEECTHHHHTTCSS----BCCTTEEEEEECS---SSE
T ss_pred             cccccCCCCCCCCCCCEEEEEecCCCCCCCC-CCCccccEEeeeEeCHHHhhhhhCC----CcCCCeEeEccCC---CCC
Confidence            9999999987777788999999999865431 3567788899999999999776532    3456788876421   123


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeeccccCC
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                      ..|.+++    ++|+.+...+.|.+++....|+..
T Consensus       186 ~~C~GDS----GgPL~~~~~l~GI~S~g~~~C~~~  216 (240)
T 1sgf_A          186 YTCEHDS----GGPLICDGILQGITSWGPEPCGEP  216 (240)
T ss_dssp             EECCCCT----TCEEEETTEEEEEECCCCSSCCCS
T ss_pred             CCCCCCC----cCcEEEccEEEEEEEECCCCCCCC
Confidence            5788776    788877666778777765678643

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=99.88  E-value=1.2e-22  Score=189.95  Aligned_cols=166  Identities=17%  Similarity=0.172  Sum_probs=131.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.|++|.+++...+...+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        35 ~VLTAAHC~~~--~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DiALl~L~~~~~~~~~v~picL~~  110 (226)
T 1azz_A           35 WILTAAHCMDG--AGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSF--VISNDIAVIRLPVPVTLTAAIATVGLPS  110 (226)
T ss_dssp             EEEECHHHHTT--CSCEEEEESCSBSSSCCTTCEEEEECCEEECTTCBTT--TTBSCCEEEECSSCCCCCSSSCCCBCCS
T ss_pred             EEEEhHHhcCC--CCceEEEEcceEcCCCCCccEEEEEEEEEECCCCCCC--CCCCceEEEEECCccccCCCcccccCCC
Confidence            48999999965  3578999999887665556778999999999999864  6789999999999999999999999997


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|+++|||.+..... ..+..++.+.+.+++...|...+.     .....++|++..    .....|++++  
T Consensus       111 ~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~-----~~~~~~~Ca~~~----~~~~~C~GDS--  178 (226)
T 1azz_A          111 TDVGVGTVVTPTGWGLPSDSAL-GISDVLRQVDVPIMSNADCDAVYG-----IVTDGNICIDST----GGKGTCNGDS--  178 (226)
T ss_dssp             SCCCTTCEEEEEESSCSSTTCS-SSCSBCEECCEEEECHHHHHHHHS-----CCCTTEEEECCT----TTCBCCTTCT--
T ss_pred             CCCCCCCEEEEEeCCccCCCCC-CCCchhEEeeEEEEChhHhhhhhC-----cCCCceEeecCC----CCCccCCCCC--
Confidence            6667788999999998865332 356788999999999999977653     256678887642    1245788876  


Q ss_pred             cccCCcccccccccceeEeec-ccc
Q psy3170         162 QDESPIALAPALVGGVRYVRT-QCD  185 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~-~Cg  185 (525)
                        ++|+.....+.|.+++... .|+
T Consensus       179 --GgPL~~~~~l~Gi~S~g~~~~C~  201 (226)
T 1azz_A          179 --GGPLNYNGLTYGITSFGAAAGCE  201 (226)
T ss_dssp             --TCEEEETTEEEEEEEEEETTCTT
T ss_pred             --CcceEECCEEEEEEEEECCCCCC
Confidence              7888766667787777653 564

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=99.88  E-value=1.2e-22  Score=197.15  Aligned_cols=175  Identities=22%  Similarity=0.307  Sum_probs=128.7

Q ss_pred             ceeeeccCccc------CCCCCeEEEEceeecccCCc-CcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCce
Q psy3170           2 VNNHAAHCITS------PLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~------~~~~~~~v~~G~~~~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v   74 (525)
                      .|||||||+..      .....+.|++|.+++...+. ..+.+.|+++++||+|+.. .++.||||||||++|+.|+++|
T Consensus        67 ~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~-~~~~~DIALl~L~~pv~~~~~v  145 (289)
T 2bdy_A           67 WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYI  145 (289)
T ss_dssp             EEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECTTCBTT-TTCBTCCEEEEESSCCCCBTTB
T ss_pred             EEEEcHHhcccCccccccCcccEEEEEccccccccCCCcceeeeeEEEEECCCCCCC-CCCCCeEEEEEECCccccCCcc
Confidence            48999999853      22356899999987754433 3466789999999999842 2568999999999999999999


Q ss_pred             eeeecCCCC-----CCCCCCEEEEeccccccCCcc----cccccceeeeeeecCccccccccccccccccccceeeccCC
Q psy3170          75 KPACLNRAH-----NVKSPTAIASGFGKLNYFECT----QYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSR  145 (525)
Q Consensus        75 ~picL~~~~-----~~~~~~~~v~GWG~~~~~~~~----~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  145 (525)
                      +|||||...     ...+..|+|+|||.+......    ..+..|+.+.+++++...|...+..    .+...|+|++..
T Consensus       146 ~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~----~i~~~~iCag~~  221 (289)
T 2bdy_A          146 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI----RITDNMFCAGYK  221 (289)
T ss_dssp             CCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CCCSBCEEEEEEBCCHHHHHHTCSS----CCCTTEEEECCC
T ss_pred             cccCCCCccccccccCCCCEEEEECCCcCCCccccCccccccccceEEEEEEECHHHhhccccC----cCCCCEEeccCC
Confidence            999999643     246788999999988653210    1256889999999999999876532    356778998764


Q ss_pred             cccCCchhhhchhhhhcccCCccccc------ccccceeEeeccccC
Q psy3170         146 AKYGEFPHQCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDI  186 (525)
Q Consensus       146 ~~~g~~~~~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~  186 (525)
                      .+.+.....|++++    ++|+.+..      .+.|.+++. ..|+.
T Consensus       222 ~~~~~~~~~C~GDS----GGPLv~~~~~~~~~~l~GIvS~g-~~C~~  263 (289)
T 2bdy_A          222 PDEGKRGDACEGDS----GGPFVMKSPFNNRWYQMGIVSWG-EGCDR  263 (289)
T ss_dssp             GGGCCCCBCCTTCT----TCEEEEECTTTCCEEEEEEEEEC-SSSSC
T ss_pred             CCCCCCCccCCCCC----ccceEEEECCCCCEEEEEEEEEC-CCCCC
Confidence            33223456798887    77876643      356777775 46864

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=99.88  E-value=1.1e-22  Score=191.74  Aligned_cols=170  Identities=23%  Similarity=0.296  Sum_probs=129.6

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.... ...+.|++|.+++.......+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||
T Consensus        38 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp  115 (238)
T 3bg8_A           38 WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMA--ESGYDIALLKLETTVNYTDSQRPISLP  115 (238)
T ss_dssp             EEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEEECTTCCCG--GGSCCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEEECCCCCCC--CCCCcEEEEEECCccccCCCcccCCCC
Confidence            4899999997642 3568899999887666666788999999999999864  567999999999999999999999999


Q ss_pred             CCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ...  ...+..|+++|||.+....  ..+..++.+.+.+++...|...+...   .....|+|++...   .....|+++
T Consensus       116 ~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~---~~~~~C~GD  187 (238)
T 3bg8_A          116 SKGERNVIYTDCWVTGWGYRKLRD--KIQNTLQKAKIPLVTNEECQKRYRGH---KITHKMICAGYRE---GGKDACKGD  187 (238)
T ss_dssp             CGGGGSSCCCCEEEEESCCSSSSC--CCCSBCEEEECCEECHHHHHHHCTTS---CCCTTEEEECCTT---CCCBCCTTC
T ss_pred             CCccCcCCCCeEEEEecCCCCCCC--ChhhhhcEeeEEEECHHHhhhhhcCC---CCCCCeEeecCCC---CCCCcCCCC
Confidence            654  3567889999999886554  34677889999999999997765431   2466788887532   123578877


Q ss_pred             hhhcccCCccccc----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+..    .+.|.+++. ..|+.
T Consensus       188 S----GgPL~~~~~~~~~l~GI~S~g-~~C~~  214 (238)
T 3bg8_A          188 S----GGPLSCKHNEVWHLVGITSWG-EGCAQ  214 (238)
T ss_dssp             T----TCEEEEEETTEEEEEEEEEEC-SSSSC
T ss_pred             C----CcceEEEECCeEEEEEEEEEC-CCCCC
Confidence            6    67776543    256766765 45754

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=99.88  E-value=9.5e-23  Score=205.22  Aligned_cols=175  Identities=22%  Similarity=0.306  Sum_probs=131.1

Q ss_pred             ceeeeccCcccCCC--CCeEEEEceeecccCCc--CcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeee
Q psy3170           2 VNNHAAHCITSPLG--KPRYVRFGLITKLSYSV--TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPA   77 (525)
Q Consensus         2 ~~lTAAHC~~~~~~--~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pi   77 (525)
                      .|||||||+.....  ..+.|++|.+++.....  ..+.+.|+++++||+|+..  ++.||||||||++|+.|+++|+||
T Consensus       173 ~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~--~~~nDIALL~L~~pv~~~~~v~Pi  250 (394)
T 2b9l_A          173 VVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPK--TVVNDVALLLLDRPLVQADNIGTI  250 (394)
T ss_dssp             EEEECHHHHGGGTTCGGGEEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCBCCTTCCCC
T ss_pred             EEEeccceecCCCCCcccEEEEeceeeccCCcCCCccEEEEEEEEEECCCCCCC--ccccceEEEEecCccccCCceeee
Confidence            48999999976433  57899999988754432  3578999999999999875  678999999999999999999999


Q ss_pred             ecCCCCC-CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccc---cccccceeeccCCcccCCchh
Q psy3170          78 CLNRAHN-VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQC---DILAMPMIIGGSRAKYGEFPH  153 (525)
Q Consensus        78 cL~~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~  153 (525)
                      |||.... ..+..|+|+|||.+..+.....+..|+.+.+++++...|...+.....   ..+...|+|++...    +..
T Consensus       251 cLp~~~~~~~~~~~~v~GWG~t~~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~----g~d  326 (394)
T 2b9l_A          251 CLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ----GKD  326 (394)
T ss_dssp             BCCCTTCCCCCSCEEEEECCTTTTTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBS----SCS
T ss_pred             EcCCcccCccCCEEEEEeccCccCCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCC----CCc
Confidence            9997543 456789999999987544334678899999999999999876532110   12456789987532    246


Q ss_pred             hhchhhhhcccCCccccc-------ccccceeEeeccccCC
Q psy3170         154 QCTQYSKIQDESPIALAP-------ALVGGVRYVRTQCDIL  187 (525)
Q Consensus       154 ~C~~~~~~~~~~~l~~~~-------~~~g~v~~~~~~Cg~~  187 (525)
                      .|++++    ++||.+..       .+.|.+++. ..|+..
T Consensus       327 ~C~GDS----GGPLv~~~~~~~~~~~lvGIvS~G-~~C~~~  362 (394)
T 2b9l_A          327 TCTGDG----GSPLFCPDPRNPSRYMQMGIVAWG-IGCGDE  362 (394)
T ss_dssp             CCSSCT----TCEEEEEETTEEEEEEEEEEESCT-TCCCBS
T ss_pred             CCCCCc----chhhEEEEcCCCCeEEEEEEEEEC-CCCCCC
Confidence            788887    77877631       246666665 358643

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=99.88  E-value=2.2e-22  Score=189.84  Aligned_cols=172  Identities=19%  Similarity=0.245  Sum_probs=131.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.|++|.+++.......+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        37 ~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  114 (238)
T 1ym0_A           37 WVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPA--TLENDVSVIKTAVAITFDINVGPICAPD  114 (238)
T ss_dssp             EEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCSSSCCCCBCCC
T ss_pred             EEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEECCCCCCC--CCcccEEEEEeCCCccccCcccccCCCC
Confidence            48999999977555678999999988766666788999999999999875  6789999999999999999999999996


Q ss_pred             CCC-CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          82 AHN-VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        82 ~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ... ..+..|+++|||.+...+. ..+..++.+.+.+.+...|...+...   .....|+|++...+ +.....|.+++ 
T Consensus       115 ~~~~~~~~~~~~~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~~-~~~~~~C~GDs-  188 (238)
T 1ym0_A          115 PANDYVYRKSQCSGWGTINSGGV-CCPAVLRYVTLNITTNAFCDAVYTSD---TIYDDMICATDNTG-MTDRDSCQGDS-  188 (238)
T ss_dssp             TTCCCTTCEEEEEESCCSSTTCC-SCCSBCEEEEEEECCHHHHHHHCTTS---CCCTTEEEEECSSC-SSSCBCCTTTT-
T ss_pred             CcCCCCCCceEEEeecCCCCCCC-cCCccceEEEEEeeCHHHHhHhhccc---ccCCCeEEecCCCC-CCcCccCCCcc-
Confidence            543 3678899999999876542 23678899999999999997765431   34567888765321 11245788776 


Q ss_pred             hcccCCccccc-----ccccceeEeecccc
Q psy3170         161 IQDESPIALAP-----ALVGGVRYVRTQCD  185 (525)
Q Consensus       161 ~~~~~~l~~~~-----~~~g~v~~~~~~Cg  185 (525)
                         ++|+.+..     .+.|.+++. ..|+
T Consensus       189 ---GgPL~~~~~~~~~~l~Gi~S~g-~~C~  214 (238)
T 1ym0_A          189 ---GGPLSVKDGSGIFSLVGIVSWG-IGCA  214 (238)
T ss_dssp             ---TCEEEEECTTCCEEEEEEEEEC-SSSS
T ss_pred             ---CCeeEEECCCCCEEEEEEEeEC-CCCC
Confidence               67776543     356666665 3574

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=99.88  E-value=3.8e-22  Score=186.27  Aligned_cols=160  Identities=20%  Similarity=0.216  Sum_probs=125.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+    .+.|++|.+++...+...+.+.|+++++||+|+..  +..||||||||++|+.|+++|+|||||.
T Consensus        38 ~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp~  111 (224)
T 1cgh_A           38 FVLTAAHCWGS----NINVTLGAHNIQRRENTQQHITARRAIRHPQYNQR--TIQNDIMLLQLSRRVRRNRNVNPVALPR  111 (224)
T ss_dssp             EEEECGGGCCS----SEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEEhHHhCCC----CCEEEEeecccCCCCCccEEEEEEEEEcCCCCCCC--CCcCCEEEEEECCCCcCCCceEeeECCC
Confidence            48999999953    58999999988665666788999999999999875  6789999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+.. +  ..+..++.+.+.+.+...|...+..    .....++|++...+   ....|.+++
T Consensus       112 ~~~~~~~~~~~~v~GwG~~~~-~--~~~~~l~~~~~~i~~~~~C~~~~~~----~~~~~~~Ca~~~~~---~~~~C~GDS  181 (224)
T 1cgh_A          112 AQEGLRPGTLCTVAGWGRVSM-R--RGTDTLREVQLRVQRDRQCLRIFGS----YDPRRQICVGDRRE---RKAAFKGDS  181 (224)
T ss_dssp             TTCCCCTTCEEEEEESCCSSS-S--CCCSBCEEEEEEBCCHHHHHHHCTT----CCTTTEEEECCTTS---CCBCCTTCT
T ss_pred             CCCCCCCCCEEEEEECCcCCC-C--CCCCcceEEEEEeeCHHHHHHHhCc----CCCcceEeeccCCC---CCeEeeCCC
Confidence            543  5678899999999873 2  3467889999999999999776521    23344888875321   235788776


Q ss_pred             hhcccCCcccccccccceeEee
Q psy3170         160 KIQDESPIALAPALVGGVRYVR  181 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~  181 (525)
                          ++|+.+...+.|.+++..
T Consensus       182 ----GgPL~~~~~l~Gi~S~g~  199 (224)
T 1cgh_A          182 ----GGPLLCNNVAHGIVSYGK  199 (224)
T ss_dssp             ----TCEEEETTEEEEEEEECC
T ss_pred             ----ccceEEccEEEEEEEEEC
Confidence                788877666677777754

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=99.88  E-value=2.3e-22  Score=187.51  Aligned_cols=162  Identities=19%  Similarity=0.261  Sum_probs=126.6

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.... ...+.|++|.+++   ....+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||
T Consensus        35 ~VLTAAHC~~~~~~~~~~~v~~G~~~~---~~~~~~~~v~~~~~hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picL~  109 (222)
T 1eq9_A           35 NVLTAAHCVDGLSNLNRLKVHVGTNYL---SESGDVYDVEDAVVNKNYDDF--LLRNDVALVHLTNPIKFNDLVQPIKLS  109 (222)
T ss_dssp             EEEECHHHHTTCSCGGGEEEEESCSBT---TSCCEEEEEEEEEECTTCBTT--TTBCCCEEEEESSCCCCBTTBCCCEEC
T ss_pred             EEEEhhhcCCCCCCCceEEEEECceec---CCCCeEEEEEEEEECCCCCCC--CCCCCEEEEEECCccccCCceEccCCC
Confidence            4899999996543 4578999998876   344678999999999999865  678999999999999999999999999


Q ss_pred             CCCC-CCCCCEEEEeccccccCCcccccccceeeeeeecCccccc-cccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN-VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGG-VRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      .... ..+..|+++|||.+..++  ..+..++.+.+.+.+...|. ..+      .....++|++...    ....|.++
T Consensus       110 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~------~~~~~~~Ca~~~~----~~~~C~GD  177 (222)
T 1eq9_A          110 TNDEDLESNPCTLTGWGSTRLGG--NTPNALQEIELIVHPQKQCERDQW------RVIDSHICTLTKR----GEGACHGD  177 (222)
T ss_dssp             SCCTTCTTSEEEEEECCCSSTTC--CCCSBCEEEEEEEECHHHHHHHSS------SCCTTEEEECCCT----TCBCCTTC
T ss_pred             CCCcCCCCCEEEEEcccccCCCC--cccchheEeEEEEeCHHHhCcccC------CCCccEEeecCCC----CCeeeeCC
Confidence            7655 567789999999986544  35678889999999998897 333      1456788876521    23568877


Q ss_pred             hhhcccCCcccccccccceeEeecccc
Q psy3170         159 SKIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       159 ~~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                      +    ++|+.+...+.|.+++. ..|+
T Consensus       178 S----GgPL~~~~~l~GI~S~g-~~C~  199 (222)
T 1eq9_A          178 S----GGPLVANGAQIGIVSFG-SPCA  199 (222)
T ss_dssp             T----TCEEEETTEEEEEEEEC-STTT
T ss_pred             c----cceEEECCEEEEEEEEC-CCcC
Confidence            6    78887766677777775 4675

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=99.88  E-value=3.1e-22  Score=190.41  Aligned_cols=172  Identities=21%  Similarity=0.293  Sum_probs=133.0

Q ss_pred             ceeeeccCcccC--------------CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC
Q psy3170           2 VNNHAAHCITSP--------------LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP   67 (525)
Q Consensus         2 ~~lTAAHC~~~~--------------~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~   67 (525)
                      .|||||||+...              ....+.|++|.+++.......+.+.|+++++||+|+..  .+.||||||||++|
T Consensus        36 ~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIAll~L~~~  113 (251)
T 3gov_B           36 WIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPN--TFENDVALVELLES  113 (251)
T ss_dssp             EEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCSSCEEECEEEEEECTTCBTT--TTBTCCEEEEESSC
T ss_pred             EEEECHhhccccccccccccccccccccccEEEEecceeccCCCCcceEeeeEEEEECCCCCCC--CCCCCEEEEEeCCc
Confidence            489999999652              33568999999887666667788999999999999875  67899999999999


Q ss_pred             ccCCCceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcc
Q psy3170          68 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAK  147 (525)
Q Consensus        68 v~~~~~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  147 (525)
                      +.++++|+|||||......+..|+++|||.+..+   ..+..++.+.+.+++...|...+... -......|+|++...+
T Consensus       114 ~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~---~~~~~L~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~Ca~~~~~  189 (251)
T 3gov_B          114 PVLNAFVMPICLPEGPQQEGAMVIVSGWGKQFLQ---RFPETLMEIEIPIVDHSTCQKAYAPL-KKKVTRDMICAGEKEG  189 (251)
T ss_dssp             CCCSSSCCCCBCCSSCCCTTCEEEEEECSCCTTS---CCCSBCEEEEEEEECHHHHHHHTTTT-TCCCCTTEEEESCTTC
T ss_pred             ccCCCceEEeECCCCCCCCCCEEEEEcCCCCCCC---CCCccceEEeeEEECHHHhhhhhhhc-cCCCCCCcEEecCCCC
Confidence            9999999999999877778889999999987653   35678999999999999998765431 1235667888875321


Q ss_pred             cCCchhhhchhhhhcccCCccccc------ccccceeEeeccccCC
Q psy3170         148 YGEFPHQCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDIL  187 (525)
Q Consensus       148 ~g~~~~~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~~  187 (525)
                         ....|.+++    ++|+.+..      .+.|.+++. ..|+..
T Consensus       190 ---~~~~C~GDs----GgPl~~~~~~~~~~~l~Gi~S~g-~~C~~~  227 (251)
T 3gov_B          190 ---GKDACAGDS----GGPMVTLNRERGQWYLVGTVSWG-DDCGKK  227 (251)
T ss_dssp             ---CCBCCTTCT----TCEEEEECTTTCCEEEEEEEEEC-SSSSCS
T ss_pred             ---CCccCCCCC----CCeEEeeeCCCCcEEEEEEEEEC-CCCCCC
Confidence               235688776    67776542      256766665 567643

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=99.87  E-value=2.8e-22  Score=202.80  Aligned_cols=172  Identities=21%  Similarity=0.317  Sum_probs=131.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCC------------cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCcc
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYS------------VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE   69 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~------------~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~   69 (525)
                      .|||||||+.......+.|++|.+++....            ...+.+.|+++++||+|+..  ++.||||||||++|+.
T Consensus       157 ~VLTAAHCv~~~~~~~~~V~lG~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~--~~~nDIALL~L~~~v~  234 (408)
T 2xxl_A          157 YILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDAR--HIMHDIALLKLNRSVP  234 (408)
T ss_dssp             EEEECGGGTTTCTTTEEEEEESCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCC
T ss_pred             EEEEcHHhcCCCCCceEEEEeeeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCCcc--ccccceEEEEECCccc
Confidence            489999999765456789999998875433            23567899999999999875  6789999999999999


Q ss_pred             CCCceeeeecCCCC-----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccC
Q psy3170          70 FSETLKPACLNRAH-----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGS  144 (525)
Q Consensus        70 ~~~~v~picL~~~~-----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  144 (525)
                      |+++|+|||||...     ...+..|+|+|||.+..+.   .+..++.+.+++.+...|...+...    ....++|++.
T Consensus       235 ~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~t~~~~---~s~~L~~~~v~iv~~~~C~~~~~~~----~~~~~iCAg~  307 (408)
T 2xxl_A          235 FQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS---SSDVLLQANVPLQPRSACSQAYRRA----VPLSQLCVGG  307 (408)
T ss_dssp             CBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCCBTTBC---SCSBCEEEEEEEECHHHHHHHHTSC----CCTTEEEECC
T ss_pred             cccCccccCCCCcccccccccCCCEEEEEEeCcCCCCC---CCchheEeeeeecCHHHHHHHhccc----CCCceEeecC
Confidence            99999999999653     3567889999999987543   4678999999999999998766442    2347888875


Q ss_pred             CcccCCchhhhchhhhhcccCCc------ccc----cccccceeEeeccccCCCCC
Q psy3170         145 RAKYGEFPHQCTQYSKIQDESPI------ALA----PALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       145 ~~~~g~~~~~C~~~~~~~~~~~l------~~~----~~~~g~v~~~~~~Cg~~~~~  190 (525)
                      ..    ..+.|++++    ++|+      .+.    ..+.|.+++....|+....|
T Consensus       308 ~~----g~d~C~GDS----GGPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~P  355 (408)
T 2xxl_A          308 GD----LQDSCKGDS----GGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLP  355 (408)
T ss_dssp             SC----SSSGGGSCT----TCEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCC
T ss_pred             CC----CCccCCCcc----cChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCC
Confidence            32    346898887    6777      332    13467777765678754333

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=99.87  E-value=2.8e-22  Score=189.80  Aligned_cols=164  Identities=21%  Similarity=0.268  Sum_probs=126.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..   ..+.|++|.+++.......+.+.|.++++||+|+..  +..||||||||++|+.|+++|+|||||.
T Consensus        51 ~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  125 (245)
T 1t8o_A           51 WVVTAAHCGVT---TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSL--TINNDITLLKLSTAASFSQTVSAVCLPS  125 (245)
T ss_dssp             EEEECGGGCCC---TTSEEEESCSBTTCSSSCCEEEEEEEEEECTTCCTT--TCCSCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEEcHHhCcC---CCcEEEEeeeecCCCCCCcEEEEEEEEEeCCCCCCC--CCCCCEEEEEECCCCcCCCceeeeECCC
Confidence            48999999865   457899999887665566788999999999999865  6789999999999999999999999996


Q ss_pred             CC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ..  ...+..|+++|||.+..... ..+..++.+.+.+++...|...+..    .....|+|++.     .....|.+++
T Consensus       126 ~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~-----~~~~~C~GDS  195 (245)
T 1t8o_A          126 ASDDFAAGTTCVTTGWGLTRYTNA-NTPDRLQQASLPLLSNTNCKKYWGT----KIKDAMICAGA-----SGVSSCMGDS  195 (245)
T ss_dssp             TTCCCCTTCEEEEEESCCSCC--C-CCCSBCEEEEEEEECHHHHHHHHGG----GCCTTEEEEEC-----SSCBCCTTCT
T ss_pred             CccCCCCCCEEEEEEeCCCCCCCC-CCcchheEEEEeeEcchhhhHhhcC----cCCCceEEccC-----CCCccCcccC
Confidence            54  34678899999999875442 3567889999999999999775532    35667888762     1235688776


Q ss_pred             hhcccCCccccc----ccccceeEeecccc
Q psy3170         160 KIQDESPIALAP----ALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~----~~~g~v~~~~~~Cg  185 (525)
                          ++|+.+..    .+.|.+++.. .|+
T Consensus       196 ----GgPL~~~~~~~~~l~GI~S~g~-~c~  220 (245)
T 1t8o_A          196 ----GGPLVCKKNGAWTLVGIVSWGS-STC  220 (245)
T ss_dssp             ----TCEEEEEETTEEEEEEEEEECC-TTC
T ss_pred             ----cCCEEEEECCEEEEEEEEEeCC-CCC
Confidence                67776543    3567667654 464

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=99.87  E-value=6.5e-22  Score=191.08  Aligned_cols=172  Identities=23%  Similarity=0.368  Sum_probs=128.2

Q ss_pred             ceeeeccCcccC----CCCCeEEEEceeecccCC-----------cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCC
Q psy3170           2 VNNHAAHCITSP----LGKPRYVRFGLITKLSYS-----------VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP   66 (525)
Q Consensus         2 ~~lTAAHC~~~~----~~~~~~v~~G~~~~~~~~-----------~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~   66 (525)
                      .|||||||+...    ....+.|++|.+++....           ...+.+.|+++++||+|+.......||||||||++
T Consensus        62 ~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~  141 (278)
T 2olg_A           62 YIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNR  141 (278)
T ss_dssp             EEEECGGGTSTHHHHHTCEEEEEEESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESS
T ss_pred             EEEEhHHhCCCcccccccceeEEEeCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECC
Confidence            489999999642    123578999998775432           23567889999999999875323479999999999


Q ss_pred             CccCCCceeeeecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccC
Q psy3170          67 PVEFSETLKPACLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGS  144 (525)
Q Consensus        67 ~v~~~~~v~picL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  144 (525)
                      |+.|+++|+|||||...  ...+..|+++|||.+..+   ..+..++.+.+++++...|...+... -......|+|++.
T Consensus       142 ~v~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~~~---~~~~~l~~~~~~i~~~~~C~~~~~~~-~~~~~~~~~Ca~~  217 (278)
T 2olg_A          142 QVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETG---QYSTIKQKLAVPVVHAEQCAKTFGAA-GVRVRSSQLCAGG  217 (278)
T ss_dssp             CCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSSC---CCCSBCEEEEEEBCCGGGGGGGGSST-TCCCCTTEEEECC
T ss_pred             CCcCCCCcCccCcCCCCCCcCCCCEEEEEcCCcCCCC---CccchhhcccccccCHHHHHHHhccc-cccCCCceEeeec
Confidence            99999999999999654  356788999999998653   25678899999999999998766431 1135667899875


Q ss_pred             CcccCCchhhhchhhhhcccCCccccc-----ccccceeEeeccccC
Q psy3170         145 RAKYGEFPHQCTQYSKIQDESPIALAP-----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       145 ~~~~g~~~~~C~~~~~~~~~~~l~~~~-----~~~g~v~~~~~~Cg~  186 (525)
                      ..    ....|++++    ++|+.+..     .+.|.+++. ..|+.
T Consensus       218 ~~----~~~~C~GDS----GGPL~~~~~~~~~~l~GIvS~g-~~C~~  255 (278)
T 2olg_A          218 EK----AKDSCGGDS----GGPLLAERANQQFFLEGLVSFG-ATCGT  255 (278)
T ss_dssp             TT----CTTCCCCCT----TCEEEEEEGGGEEEEEEEEEEC-CBCST
T ss_pred             CC----CCeeCCCcc----CcceEEEcCCCcEEEEEEEEEC-CCCCC
Confidence            32    246788877    77877641     256777775 56864

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=99.87  E-value=2.5e-22  Score=190.78  Aligned_cols=173  Identities=24%  Similarity=0.338  Sum_probs=128.8

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.|++|.+++...+...+.+.|+++++||+|+..  +..||||||||++|+.|+++|+|||||.
T Consensus        36 ~VLTAAHC~~~--~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp~  111 (250)
T 1aut_C           36 WVLTAAHCMDE--SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKS--TTDNDIALLHLAQPATLSQTIVPICLPD  111 (250)
T ss_dssp             EEEECGGGSSS--CSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEEChHHcCC--CCceEEEEcccccCCCCCccEEEEEEEEEECCCCCCC--CCCCcEEEEEECCcccCCCceeeeEcCC
Confidence            48999999965  3568899999887666666788999999999999875  6789999999999999999999999986


Q ss_pred             CC------CCCCCCEEEEeccccccCCccc---ccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          82 AH------NVKSPTAIASGFGKLNYFECTQ---YSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        82 ~~------~~~~~~~~v~GWG~~~~~~~~~---~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      ..      ...+..|+++|||.+.......   ....++.+.+.+++...|...+..    .....|+|++...   ...
T Consensus       112 ~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~----~~~~~~~Cag~~~---~~~  184 (250)
T 1aut_C          112 SGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN----MVSENMLCAGILG---DRQ  184 (250)
T ss_dssp             HHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCSS----CCCTTEEEECCTT---CCC
T ss_pred             CccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHHHhhHHhcc----CCCCCEEEeCCCC---CCC
Confidence            42      2467889999999886543211   134788899999999999776543    3456788887532   123


Q ss_pred             hhhchhhhhcccCCccccc----ccccceeEeeccccCCCCC
Q psy3170         153 HQCTQYSKIQDESPIALAP----ALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~~~~~  190 (525)
                      ..|.+++    ++|+.+..    .+.|.+++. ..|+....+
T Consensus       185 ~~C~GDS----GGPL~~~~~g~~~l~GI~S~g-~~C~~~~~p  221 (250)
T 1aut_C          185 DACEGDS----GGPMVASFHGTWFLVGLVSWG-EGCGLLHNY  221 (250)
T ss_dssp             BCCTTCT----TCEEEEEETTEEEEEEEEEEC-SSSSCTTCC
T ss_pred             CCCCCCC----chheEEEECCeEEEEEEEEEC-CCCCCCCCC
Confidence            5788776    67776532    256766665 457643333

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.87  E-value=1.5e-23  Score=189.45  Aligned_cols=168  Identities=18%  Similarity=0.230  Sum_probs=114.4

Q ss_pred             eeEeE-EEEEeC---CEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEEC
Q psy3170         279 KWFCG-GSLISP---NYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~-GtLIs~---~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~  354 (525)
                      ...|+ |.++.+   +||||||||+...  ....+..        .. ..  .+.. ..+..|      ..+|||||||+
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~--~~~~v~~--------~~-~~--~~g~-~~~~~~------~~~DiAll~l~   70 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGA--TTWWANS--------AR-TT--VLGT-TSGSSF------PNNDYGIVRYT   70 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTC--SEEESST--------TS-CS--EEEE-EEEEEC------SBSCEEEEEEC
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCC--CcEEecC--------CC-ce--EeEE-Eecccc------CCCCEEEEEec
Confidence            36799 998874   6999999998652  2221110        00 00  1111 122222      23799999999


Q ss_pred             C-CcccCCCccceecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCc
Q psy3170         355 P-PVEFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK  432 (525)
Q Consensus       355 ~-~~~~~~~v~picL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~  432 (525)
                      + ++.+++.++|++|+.. ....+..+.++||+..     .....|+...+.+ ....|. .+..+...++|+       
T Consensus        71 ~~~~~~~~~v~~~~l~~~~~~~~g~~v~~~Gw~~~-----~~~g~l~~~~~~v-~~~~~~-~~~~~~~~~~ca-------  136 (185)
T 2qa9_E           71 NTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG-----THSGSVTALNATV-NYGGGD-VVYGMIRTNVCA-------  136 (185)
T ss_dssp             CSSSCCCCEETTEECCEECCCCTTCEEEEEETTTE-----EEEEEEEEEEEEE-ECSTTC-EEEEEEEESCCC-------
T ss_pred             CCCccccCccceeeeCCcccCCCCCEEEEecCCCc-----eeEeEEEEEEEEE-EcCCCC-EEeceEEecccC-------
Confidence            9 9999999999999753 3457889999999632     2345677776664 222342 111122345553       


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                        |+|||||||++.     . +|+||+||+..|+..+.|++|++|+.|++||+..+
T Consensus       137 --c~GDSGGPlv~~-----~-~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          137 --EPGDSGGPLYSG-----T-RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             --CTTCTTCEEEET-----T-EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             --CCCCccceEEEC-----C-EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence              999999999872     2 79999999977665678999999999999998765

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=99.87  E-value=4.2e-22  Score=188.21  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=128.5

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.... ...+.|++|.+++.......+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||
T Consensus        38 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp  115 (241)
T 2any_A           38 WVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKVS--EGNHDIALIKLQAPLEYTEFQKPISLP  115 (241)
T ss_dssp             EEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEEECTTCCTT--SSSSCCEEEEESSCCCCBTTBCCCCCC
T ss_pred             EEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEEECCCCCCC--CCCCCeEEEEeCCcccCCCCcceeEcC
Confidence            4899999997642 3568899999887666666778899999999999865  668999999999999999999999999


Q ss_pred             CCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ...  ...+..|+++|||.+....  ..+..++.+.+.+++...|...+...   .....++|++...   .....|.++
T Consensus       116 ~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~---~~~~~C~GD  187 (241)
T 2any_A          116 SKGDTSTIYTNCWVTGWGFSKEKG--EIQNILQKVNIPLVTNEECQKRYQDY---KITQRMVCAGYKE---GGKDACKGD  187 (241)
T ss_dssp             CSSCCSTTCSEEEEEESSCSSTTC--CCCSBCEEEEEEEECHHHHHTTSCTT---CSCTTEEEECCTT---CCCBCCTTC
T ss_pred             CcccCCCCCCeEEEEecccCCCCC--CcCchhheeEeEEeCHHHhhhHhccC---CCCcCcEeecCCC---CCCccCCCC
Confidence            654  3557889999999986554  34678899999999999998765431   2456788876432   123568777


Q ss_pred             hhhcccCCccccc----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+..    .+.|.+++. ..|+.
T Consensus       188 s----GgPl~~~~~~~~~l~GI~S~g-~~c~~  214 (241)
T 2any_A          188 S----GGPLVCKHNGMWRLVGITSWG-EGCAR  214 (241)
T ss_dssp             T----TCEEEEEETTEEEEEEEEEEC-SSSSC
T ss_pred             C----CCcEEEEECCEEEEEEEEEec-CCCCC
Confidence            6    67776532    256666665 35753

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=99.87  E-value=3.3e-22  Score=187.59  Aligned_cols=168  Identities=15%  Similarity=0.135  Sum_probs=131.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+..    .+.|++|.+++.... ...+.+.|.++++||+|+..  .+.||||||||++|+.++++|+|||||
T Consensus        34 ~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picL~  107 (231)
T 2aiq_A           34 WVLTARHCDRG----NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDT--IWDKDIMLIRLNRPVRNSAHIAPLSLP  107 (231)
T ss_dssp             EEEECGGGCCS----SCEEEESCSCTTSCCTTCEEECEEEEECCSSCCSSS--TTTTCCEEEEESSCCCCBTTBCCCCCC
T ss_pred             EEEEcHHcCCC----CCEEEEecccccccCCCceEEEEEEEEEECCCCCCC--CCCCCEEEEEecCCCCCCCcEEeeECC
Confidence            48999999854    578999998775433 23467889999999999865  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+..... ..+..++.+.+.+.+...|...+..     ....++|++...   .....|++++ 
T Consensus       108 ~~~~~~~~~~~v~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~Ca~~~~---~~~~~C~GDS-  177 (231)
T 2aiq_A          108 SNPPSVGSVCRIMGWGTITSPNA-TLPDVPHCANINILDYAVCQAAYKG-----LAATTLCAGILE---GGKDTCKGDS-  177 (231)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSSC-CCCSSCEEEEEEEECHHHHHHHCTT-----CCSSEEEEECTT---CSCBCCTTCT-
T ss_pred             CCCCCCCCEEEEEeCCccCCCCC-ccCchhhhccceecchhhhhhhhcC-----CCcCcEEeccCC---CCCcccCCcC-
Confidence            87777788999999998865432 3567889999999999999776532     456788876421   1245788876 


Q ss_pred             hcccCCcccccccccceeEeeccccCCC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDILA  188 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~~~  188 (525)
                         ++|+.+...+.|.+++....|+...
T Consensus       178 ---GgPL~~~~~l~Gi~S~g~~~C~~~~  202 (231)
T 2aiq_A          178 ---GGPLICNGQFQGILSVGGNPCAQPR  202 (231)
T ss_dssp             ---TCEEEETTEEEEEEEEECSSTTCTT
T ss_pred             ---CCcEEECCEEEEEEEEeCCCCCCCC
Confidence               7888877677888888756786433

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=99.87  E-value=5.7e-22  Score=185.60  Aligned_cols=165  Identities=21%  Similarity=0.267  Sum_probs=130.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  +..||||||||++|+.++++|+|||||.
T Consensus        39 ~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  112 (227)
T 3fzz_A           39 FVLTAAHCKG----RSMTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPD--DRSNDIMLLKLVRNAKRTRAVRPLNLPR  112 (227)
T ss_dssp             EEEECTTCCC----EEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEECcccCC----CCcEEEEcccccCCCCCCceEEEEEEEEECcCCCCC--CCcCCEEEEEECCcCCCCCcccccCCCC
Confidence            4899999983    468899999988776777788999999999999865  6789999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+...+  ..+..++.+.+.+.+...|...+...   .....++|++...+   ....|++++
T Consensus       113 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~~---~~~~C~gDs  184 (227)
T 3fzz_A          113 RNAHVKPGDECYVAGWGKVTPDG--EFPKTLHEVKLTVQKDQVCESQFQSS---YNRANEICVGDSKI---KGASFEEDS  184 (227)
T ss_dssp             TTCCCCTTCEEEEEESSCSSTTS--CCCSBCEEEEEEBCCHHHHHHHHTTT---CCTTTEEEECCCSS---CBCCTTTTT
T ss_pred             cccCCCCCCEEEEEECCcccCCC--CCCCeeeEEEeeeecHHHhhhhhccc---cCCCceEEEeCCCC---CCcccccCC
Confidence            554  568889999999887654  45778999999999999997755332   12556788764321   235688776


Q ss_pred             hhcccCCcccccccccceeEeecccc
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                          ++|+.+...+.|.+++.. .|+
T Consensus       185 ----GgPl~~~~~l~Gi~S~g~-~c~  205 (227)
T 3fzz_A          185 ----GGPLVCKRAAAGIVSYGQ-TDG  205 (227)
T ss_dssp             ----TCEEEETTEEEEEEEECC-TTC
T ss_pred             ----ccceEEecCCcEEEEECC-CCC
Confidence                788887777777777754 464

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=99.87  E-value=7.5e-22  Score=187.61  Aligned_cols=169  Identities=20%  Similarity=0.232  Sum_probs=126.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+  ...+.|++|.+++.... ...+.+.|+++++||+|+..  +..||||||||++|+.|+++|+|||||
T Consensus        52 ~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp  127 (251)
T 1pyt_D           52 HVLTAAHCISN--TLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSF--LVRNDIALIKLAETVELGDTIQVACLP  127 (251)
T ss_dssp             EEEECGGGCCT--TCCEEEEESCSBTTCSCCSSCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCCSSCCCCBCC
T ss_pred             EEEECHHHhCC--CceEEEEEcccccccCCCCCcEEEEEEEEEECCCCCCC--CCCCCEEEEEECCCcccCCCeeeeEcC
Confidence            48999999974  46789999998875432 34567899999999999865  678999999999999999999999999


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ....  ..+..|+++|||.+..++  ..+..++...+.+++...|...+...  ......|+|++..    .....|.++
T Consensus       128 ~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~----~~~~~C~GD  199 (251)
T 1pyt_D          128 SEGSLLPQDYPCFVTGWGRLYTNG--PIAAELQQGLQPVVDYATCSQRDWWG--TTVKETMVCAGGD----GVISACNGD  199 (251)
T ss_dssp             CTTCCCCTTCEEEECBCCCSSCCS--CCCSBCBCCEEECBCHHHHTSTTTTT--TTCCTTEEEECCS----CSSCCCCSC
T ss_pred             CCcccCCCCCEEEEEecccCCCCC--CcccchheeEeEeeCHHHcchhhccC--CCcCCCeEEecCC----CCCccCCCC
Confidence            6543  457789999999987554  34567888889999998897654211  1345678888752    123578877


Q ss_pred             hhhcccCCccccc----ccccceeEee-ccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVR-TQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~-~~Cg~  186 (525)
                      +    ++|+.+..    .+.|.+++.. ..|+.
T Consensus       200 S----GgPL~~~~~~~~~l~GI~S~g~~~~C~~  228 (251)
T 1pyt_D          200 S----GGPLNCQADGQWDVRGIVSFGSGLSCNT  228 (251)
T ss_dssp             T----TCEEEEESSSSEEEEEEEEECCSSCTTB
T ss_pred             C----CCceEEEECCCEEEEEEEEECCCCCCCC
Confidence            6    67776532    3567777764 36754

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=99.87  E-value=7.8e-22  Score=186.46  Aligned_cols=169  Identities=21%  Similarity=0.218  Sum_probs=126.9

Q ss_pred             ceeeeccCcccC------CCCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCce
Q psy3170           2 VNNHAAHCITSP------LGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~~------~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v   74 (525)
                      .|||||||+.+.      ....+.|++|.+++.... ...+.+.|+++++||+|+..  ++.||||||||++|+.|+++|
T Consensus        36 ~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v  113 (241)
T 3ncl_A           36 WLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDF--TFDYDIALLELEKPAEYSSMV  113 (241)
T ss_dssp             EEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCCSSC
T ss_pred             EEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEEEEEEECCCCCCC--CCCCcEEEEEECCCCcccCcc
Confidence            489999999653      235689999998776543 35578999999999999865  678999999999999999999


Q ss_pred             eeeecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          75 KPACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        75 ~picL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +|||||....  ..+..|+++|||.+..+.  ..+..++...+.+++...|...+..    .....++|++...+   ..
T Consensus       114 ~piclp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~~---~~  184 (241)
T 3ncl_A          114 RPISLPDASHVFPAGKAIWVTGWGHTQYGG--TGALILQKGEIRVINQTTCENLLPQ----QITPRMMCVGFLSG---GV  184 (241)
T ss_dssp             CCCBCCCTTCCCCTTCEEEEEESSBSSTTS--CBCSBCEEEEEEECCHHHHHHHSTT----TCCTTEEEEECTTC---SS
T ss_pred             CceEcCCcccCCCCCCEEEEEEecccCCCC--CcCceeeEEeEEEECHHHhhhhccc----CCCCCeEEeCCCCC---CC
Confidence            9999986543  467889999999987654  3467889999999999999876543    35667888764321   23


Q ss_pred             hhhchhhhhcccCCccccc-----ccccceeEeeccccC
Q psy3170         153 HQCTQYSKIQDESPIALAP-----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~-----~~~g~v~~~~~~Cg~  186 (525)
                      ..|.+++    ++|+.+..     .+.|.+++. ..|+.
T Consensus       185 ~~C~GDs----GgPl~~~~~~g~~~l~Gi~S~g-~~c~~  218 (241)
T 3ncl_A          185 DSCQGDS----GGPLSSVEADGRIFQAGVVSWG-DGCAQ  218 (241)
T ss_dssp             BCCTTCT----TCEEEEECTTSCEEEEEEEEEC-SSSSC
T ss_pred             ccCCCcC----CCCEEEEcCCCcEEEEEEEEEC-CCCCC
Confidence            5688776    67775422     145666665 45753

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=99.87  E-value=1.4e-21  Score=185.91  Aligned_cols=175  Identities=21%  Similarity=0.274  Sum_probs=129.1

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC----ccCCCceee
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP----VEFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~----v~~~~~v~p   76 (525)
                      .|||||||+... ....+.|++|.+++.......+.+.|+++++||+|+..  .+.||||||||++|    +.++++|+|
T Consensus        41 ~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~~~~~~~~~~~v~p  118 (252)
T 1rtf_B           41 WILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDD--TYDNDIALLQLKSDSSRCAQESSVVRT  118 (252)
T ss_dssp             EEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEECCSSSCCSCCBTTBCC
T ss_pred             EEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEEEEEeCCCCCcC--CCCCCEEEEEECCccccccccCCceec
Confidence            489999999763 34678999999877655566788999999999999875  67899999999999    899999999


Q ss_pred             eecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCccc---CCc
Q psy3170          77 ACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKY---GEF  151 (525)
Q Consensus        77 icL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~---g~~  151 (525)
                      ||||....  ..+..|+++|||.+..... ..+..++.+.+.+++...|...+...  ......|+|++...+.   ...
T Consensus       119 icLp~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~~~~~~~~~~  195 (252)
T 1rtf_B          119 VCLPPADLQLPDWTECELSGYGKHEALSP-FYSERLKEAHVRLYPSSRCTSQHLLN--RTVTDNMLCAGDTRSGGPQANL  195 (252)
T ss_dssp             CBCCCTTCCCCTTCEEEEEESCCSSTTCS-SCCSBCEEEEEEECCGGGSSTTTTTT--CCCCTTEEEEECCC------CC
T ss_pred             eeCCCccccCCCCCEEEEEEcCCCCCCCc-cccchheEeeeEEecHHHhhhhhccC--CCCCCCEEEecCCCCCCccCCC
Confidence            99996543  4577899999998865432 34678899999999999998765321  1345678888653211   011


Q ss_pred             hhhhchhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         152 PHQCTQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       152 ~~~C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      ...|..++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       196 ~~~C~GDs----GgPL~~~~~~~~~l~Gi~S~g-~~C~~  229 (252)
T 1rtf_B          196 HDACQGDS----GGPLVCLNDGRMTLVGIISWG-LGCGQ  229 (252)
T ss_dssp             CBCCTTCT----TCEEEEEETTEEEEEEEEEEC-SSSSC
T ss_pred             CccccCCC----cCceEEEeCCcEEEEEEEEEc-CCCCC
Confidence            45788776    67776532    256666665 35753

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=99.87  E-value=4.3e-22  Score=189.69  Aligned_cols=173  Identities=21%  Similarity=0.188  Sum_probs=129.0

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.... ...+.|++|.+++...+...+.+.|.++++||+|+..  +..||||||||++|+.|+++|+|||||
T Consensus        35 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp  112 (254)
T 2bz6_H           35 WVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPG--TTNHDIALLRLHQPVVLTDHVVPLCLP  112 (254)
T ss_dssp             EEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEETTCCTT--SCSSCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEECCCCCCC--CCcCcEEEEEECCccccCCCccceECC
Confidence            4899999997643 2468999999988766666788999999999999875  678999999999999999999999998


Q ss_pred             CCC-----CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-ccccccceeeccCCcccCCchhh
Q psy3170          81 RAH-----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-CDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        81 ~~~-----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      ...     ...+..|+++|||.+...+  ..+..++...+.+.+...|...+.... -......|+|++...+   ....
T Consensus       113 ~~~~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~---~~~~  187 (254)
T 2bz6_H          113 ERTFSERTLAFVRFSLVSGWGQLLDRG--ATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDG---SKDS  187 (254)
T ss_dssp             CHHHHHHTGGGCCEEEEEESCBSSTTS--CBCSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSS---SCBC
T ss_pred             CCccccccccCCCcEEEEeCcccCCCC--CCChhheeeeeeeecHHHHhhhhhccccCCccCCCEEeecCCCC---CCcc
Confidence            643     2357789999999987544  346678888999999888876553211 1134567889875321   2357


Q ss_pred             hchhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         155 CTQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      |.+++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       188 C~GDS----GgPl~~~~~g~~~l~GI~S~g-~~C~~  218 (254)
T 2bz6_H          188 CKGDS----GGPHATHYRGTWYLTGIVSWG-QGCAT  218 (254)
T ss_dssp             CGGGT----TCEEEEEETTEEEEEEEEEEC-SSSSC
T ss_pred             ccccC----CCceEEeECCEEEEEEEEEEC-CCCCC
Confidence            88876    67776532    256666665 35754

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=99.87  E-value=7e-22  Score=189.11  Aligned_cols=175  Identities=23%  Similarity=0.305  Sum_probs=130.8

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+. ....+.|++|.+++.......+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||
T Consensus        35 ~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp  112 (261)
T 3gyl_B           35 WVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE--GSQGDIALLQLSRPITFSRYIRPISLP  112 (261)
T ss_dssp             EEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEECTTCCST--TCSCCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEECCCcCCC--CCCCcEEEEEECCCccCCCceeccCCC
Confidence            489999999643 33568899999988766667788999999999999875  678999999999999999999999998


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccc----cccccccceeeccCCcccCCchhh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKT----QCDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      ....  ..+..|+++|||.+........+..++.+.+.+++...|...+...    .-......|+|++...   .....
T Consensus       113 ~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~---~~~~~  189 (261)
T 3gyl_B          113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVE---GGKDA  189 (261)
T ss_dssp             CTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSS---SSCBC
T ss_pred             CcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhhhcccccccccccccCCeEeeCCCC---CCCcc
Confidence            6543  4678899999999876543334678999999999999997765421    1123566788886422   12356


Q ss_pred             hchhhhhcccCCcccccc----cccceeEeeccccC
Q psy3170         155 CTQYSKIQDESPIALAPA----LVGGVRYVRTQCDI  186 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~~----~~g~v~~~~~~Cg~  186 (525)
                      |.+++    ++|+.+...    +.|.+++. ..|+.
T Consensus       190 C~GDs----GgPl~~~~~~~~~lvGI~S~g-~~c~~  220 (261)
T 3gyl_B          190 CQGDS----GGPLSCPVEGLWYLTGIVSWG-DACGA  220 (261)
T ss_dssp             CTTTT----TCEEEEEETTEEEEEEEECCC-CCSSC
T ss_pred             CCCCC----CCeeEEEeCCEEEEEEEEecC-CCCCC
Confidence            88776    677765422    45656654 45754

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=99.87  E-value=5.4e-22  Score=187.50  Aligned_cols=167  Identities=25%  Similarity=0.298  Sum_probs=126.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|++|.+++.......+.+.|.++++||+|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        36 ~VLTAAhC~~~~--~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp~  111 (241)
T 2jkh_A           36 YILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLKTPITFRMNVAPACLPE  111 (241)
T ss_dssp             EEEECGGGGGSC--SSCEEEESCSBTTCCCSCCEEECEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEEcHHHcCCC--CcEEEEECCccCCCCCCCcEEEEeEEEEeCCCCCCC--CCCCcEEEEEECCcccCCCCEeeeEcCC
Confidence            489999999653  468999999887665566778999999999999865  6789999999999999999999999996


Q ss_pred             CC-----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhc
Q psy3170          82 AH-----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCT  156 (525)
Q Consensus        82 ~~-----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~  156 (525)
                      ..     ...+..|+++|||.+...+  ..+..++.+.+.+.+...|...+..    .....|+|++...+   ....|.
T Consensus       112 ~~~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~~---~~~~C~  182 (241)
T 2jkh_A          112 RDWAESTLMTQKTGIVSGFGRTHEKG--EQSTRLKMLEVPYVDRNSCKLSSSF----IITQNMFCAGYDTK---QEDACQ  182 (241)
T ss_dssp             HHHHHHHTTTSSEEEEEESCBSSTTS--CBCSBCEEEEEEEECHHHHHHHCSS----CCCTTEEEESCSSS---SCBCCT
T ss_pred             CCcccccccCCCeEEEEecCCCCCCC--CcCccccEeeeccccHHHhcccccC----cCCCCeEEeeCCCC---CCccCc
Confidence            43     2457889999999886544  3466788899999999889765432    34567888874321   235688


Q ss_pred             hhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         157 QYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       157 ~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       183 GDs----GgPl~~~~~~~~~l~GI~S~g-~~C~~  211 (241)
T 2jkh_A          183 GDS----GGPHVTRFKDTYFVTGIVSWG-EGCAR  211 (241)
T ss_dssp             TTT----TCEEEEEETTEEEEEEEEEEC-SSSSC
T ss_pred             CcC----CCeeEEEECCEEEEEEEEEEC-CCCCC
Confidence            776    67776532    246666665 35753

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=99.87  E-value=7.4e-22  Score=186.54  Aligned_cols=175  Identities=19%  Similarity=0.233  Sum_probs=128.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.|++|.+++.. ....+.+.|+++++||+|+.+...+.||||||||++|+.|+++|+|||||.
T Consensus        38 ~VLTAAHC~~~~~~~~~~v~~G~~~~~~-~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~  116 (241)
T 1m9u_A           38 SALSASHCVDGVLPNNIRVIAGLWQQSD-TSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPA  116 (241)
T ss_dssp             EEEECHHHHTTCCGGGEEEEESCSBTTC-CTTCEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCS
T ss_pred             EEEecHHhCCCCCcceEEEEEEeecCCC-CCCceEEEEEEEEeCCCcCCCCCcccccEEEEEecCccccCCCccccCcCC
Confidence            4899999997654567899999887754 234678999999999999432236789999999999999999999999997


Q ss_pred             C-C-CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 A-H-NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~-~-~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      . . ...+..|+++|||.+...+  ..+..++.+.+.+++...|...+....-......++|++...   .....|.+++
T Consensus       117 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~GDS  191 (241)
T 1m9u_A          117 NNNNDYAGTTCVISGWGRTDGTN--NLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPA---GNTGACNGDS  191 (241)
T ss_dssp             CSSCCCTTCEEEEEESSCSSSSS--CCCSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTT---SCCBCCTTCT
T ss_pred             CcCCCCCCCEEEEEeCcccCCCC--CcccceeEeeEEEEcHHHhhhhhcccCCCcccCCcEEECcCC---CCCeeecCcC
Confidence            5 2 3467889999999987544  356789999999999999977543211012556788887522   1235688776


Q ss_pred             hhcccCCcccc-c--ccccceeE--e-eccccC
Q psy3170         160 KIQDESPIALA-P--ALVGGVRY--V-RTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~-~--~~~g~v~~--~-~~~Cg~  186 (525)
                          ++|+.+. .  .+.|.+++  . ...|+.
T Consensus       192 ----GgPL~~~~~~~~l~Gi~S~~~~~g~~C~~  220 (241)
T 1m9u_A          192 ----GGPLNCPDGGTRVVGVTSWVVSSGLGACL  220 (241)
T ss_dssp             ----TCEEEEESSSEEEEEEEEECCBCTTSCBC
T ss_pred             ----CccEEEeCCCEEEEEEEEEeccCCCCccC
Confidence                6777654 1  35666666  3 245753

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=99.87  E-value=9.8e-22  Score=182.70  Aligned_cols=160  Identities=18%  Similarity=0.209  Sum_probs=122.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.|++|.+++.......+.+.|++++.| +|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        35 ~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h-~y~~~--~~~~DIALl~L~~~~~~~~~v~picL~~  111 (218)
T 2z7f_E           35 FVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFEN-GYDPV--NLLNDIVILQLNGSATINANVQVAQLPA  111 (218)
T ss_dssp             EEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEES-CCBTT--TTBSCCEEEEESSCCCCSSSCCCCCCCC
T ss_pred             EEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEcc-CCCCC--CCCCCEEEEEECCcCcCCCceeccCcCC
Confidence            48999999976555678999999988766666788999999999 99865  6789999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+....  ..+..++.+.+.+. ...|...            ++|++...   .....|.+++
T Consensus       112 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~-~~~C~~~------------~~Ca~~~~---~~~~~C~GDS  173 (218)
T 2z7f_E          112 QGRRLGNGVQCLAMGWGLLGRNR--GIASVLQELNVTVV-TSLCRRS------------NVCTLVRG---RQAGVCFGDS  173 (218)
T ss_dssp             TTCCCCTTCEEEEEESSBCSSSC--CBCSBCEEEEEEEE-CTTCCTT------------SEEEECTT---SCCBCCTTCT
T ss_pred             CCCCCCCCCEEEEEEeCCCCCCC--CccchheEeeeEEe-hhHcCcc------------eeeeccCC---CCCeeCCCcC
Confidence            543  467889999999987654  34677888888888 6677553            44444321   1234677766


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...+.|.+++....|+.
T Consensus       174 ----GgPl~~~~~l~Gi~S~~~g~C~~  196 (218)
T 2z7f_E          174 ----GSPLVCNGLIHGIASFVRGGCAS  196 (218)
T ss_dssp             ----TCEEEETTEEEEEEEEESSSTTC
T ss_pred             ----CCceEEccEEEEEEEeCCccCCC
Confidence                67777766677877773323864

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=99.87  E-value=4.3e-22  Score=187.47  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=127.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|++|.+++.......+.+.|.++++||+|+.....+.||||||||++|+.++++|+|||||.
T Consensus        35 ~VLTAAhC~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~  112 (235)
T 2wph_S           35 WIVTAAHCVETG--VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIAD  112 (235)
T ss_dssp             EEEECGGGCCTT--SCCEEEESCCBTTSCCSCCEEEEEEEEEECTTTTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEECHHHCcCC--CCEEEEEcccccCCCCCCcEEeeeEEEEeCCCCcccCCcCCCCEEEEEECCcCcCCCCccccCCCC
Confidence            489999999653  468999999988666666788999999999999863236789999999999999999999999986


Q ss_pred             CCC----CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhch
Q psy3170          82 AHN----VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        82 ~~~----~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      ...    ..+..|+++|||.+...+  ..+..++.+.+.+.+...|...+..    .....|+|++...   .....|..
T Consensus       113 ~~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C~G  183 (235)
T 2wph_S          113 KEYTNIFLKFGSGYVSGWGRVFHKG--RSALVLQYLRVPLVDRATCLRSTKF----TITNNMFCAGFHE---GGRDSCQG  183 (235)
T ss_dssp             HHHHHHHHHTCEEEEEESSBSSTTS--CBCSBCEEEEEEEECHHHHHHTCSS----CCCTTEEEESCTT---CSCBCCTT
T ss_pred             CcccccccCCccEEEEeCCCccCCC--CccchheEeeeeeeCHHHhcCcccC----CCCCCEEEeCCCC---CCCccCCC
Confidence            432    246789999999986554  3567888999999999999776532    3466788887421   12357887


Q ss_pred             hhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         158 YSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       158 ~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      ++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       184 Ds----GgPl~~~~~~~~~l~GI~S~g-~~C~~  211 (235)
T 2wph_S          184 DS----GGPHVTEVEGTSFLTGIISWG-EECAM  211 (235)
T ss_dssp             CT----TCEEEEEETTEEEEEEEEEEC-SSSSC
T ss_pred             CC----CCceEEeECCeEEEEEEEEEC-CCCCC
Confidence            76    67776532    246666665 35754

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=99.86  E-value=1.7e-21  Score=182.06  Aligned_cols=161  Identities=12%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCc-ceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.......+.|++|.+++....... +.+.|++++.| +|+..  ...||||||||++|+.++++|+|||||
T Consensus        35 ~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h-~y~~~--~~~~DIALl~L~~~~~~~~~v~pi~L~  111 (225)
T 1a7s_A           35 FVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSEN-GYDPQ--QNLNDLMLLQLDREANLTSSVTILPLP  111 (225)
T ss_dssp             EEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECS-SCBTT--TTBSCCEEEEESSCCCCBTTBCCCCCC
T ss_pred             EEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEecc-cccCC--CCcCCEEEEEcCCcccCCCceeEEEcC
Confidence            489999999776557799999998876554444 78899999999 99864  678999999999999999999999999


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ....  ..+..|+++|||.+...+  ..+..++...+.+.+...|..            .++|++...   .....|+++
T Consensus       112 ~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~------------~~~Ca~~~~---~~~~~C~GD  174 (225)
T 1a7s_A          112 LQNATVEAGTRCQVAGWGSQRSGG--RLSRFPRFVNVTVTPEDQCRP------------NNVCTGVLT---RRGGICNGD  174 (225)
T ss_dssp             CTTCCCCTTCEEEEEESCCSSTTC--CCCSSCEEEEEEECCGGGSCT------------TEEEEECSS---SSCBCCTTC
T ss_pred             CCcCCCCCCCEEEEEeCCcCCCCC--CcccccceeeeEECCHHHhcc------------CceEEeccC---CCCCcccCC
Confidence            7654  567889999999987554  356788999999999888865            345554321   123567777


Q ss_pred             hhhcccCCcccccccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+...+.|.+++....|+.
T Consensus       175 S----GgPl~~~g~l~Gi~S~g~~~C~~  198 (225)
T 1a7s_A          175 G----GTPLVCEGLAHGVASFSLGPCGR  198 (225)
T ss_dssp             T----TCEEEETTEEEEEEEEECSSTTS
T ss_pred             C----cchheeCCEEEEEEEEccCCcCC
Confidence            6    67777665667777776567863

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=99.86  E-value=2.1e-21  Score=181.52  Aligned_cols=163  Identities=20%  Similarity=0.171  Sum_probs=125.8

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  +..||||||||++|+.++++++|+|||.
T Consensus        39 ~VLTAAhC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~pi~l~~  112 (226)
T 4ag1_A           39 FVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTS--TLHHDIMLLKLKEKASLTLAVGTLPFPS  112 (226)
T ss_dssp             EEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCCSSSCCCCCC-
T ss_pred             EEEECcccCC----CCeEEEeCCcccCCCCCcceEEEEEEEEeCCCCCCC--CCcCcEEEEEECCCCccCCceeccccCC
Confidence            4899999983    468999999988766666788999999999999875  6789999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+....  ..+..++.+.+.+++...|.....     .....++|++...   .....|++++
T Consensus       113 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~-----~~~~~~~Ca~~~~---~~~~~C~GDs  182 (226)
T 4ag1_A          113 QFNFVPPGRMCRVAGWGRTGVLK--PGSDTLQEVKLRLMDPQACSHFRD-----FDHNLQLCVGNPR---KTKSAFKGDS  182 (226)
T ss_dssp             ----CCTTCEEEEEESSBSSTTS--CBCSBCEEEEEEEECGGGGTTSTT-----CCTTTEEEESCTT---SCCBCCTTCT
T ss_pred             cccCCCCCCEEEEEECCCCCCCC--CCCCEeEEEEEEEcChHHcccccC-----cCccceEeeccCC---CCCcCccCCC
Confidence            543  568889999999986554  356788999999999999973211     1245678876422   1245788776


Q ss_pred             hhcccCCcccccccccceeEeecccc
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                          ++|+.+...+.|.+++.. .|+
T Consensus       183 ----GgPl~~~~~l~Gi~S~g~-~c~  203 (226)
T 4ag1_A          183 ----GGPLLCAGVAQGIVSYGR-SDA  203 (226)
T ss_dssp             ----TCEEEETTEEEEEEEECB-TTC
T ss_pred             ----CCceEEcCEEEEEEEECC-CCC
Confidence                788887777778777754 364

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=99.86  E-value=1.2e-21  Score=190.12  Aligned_cols=172  Identities=22%  Similarity=0.234  Sum_probs=126.7

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCC-----cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCcee
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYS-----VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~-----~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      .|||||||+... ....+.|++|.+++....     ...+.+.|+++++||+|+..  ++.||||||||++|+.|+++|+
T Consensus        41 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V~~i~~Hp~y~~~--~~~nDIALl~L~~~v~~~~~v~  118 (290)
T 1fiw_A           41 WLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSAS--SEANDIALMKITPPVTCGHFIG  118 (290)
T ss_dssp             EEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCEEEEEEEEEECTTCBTT--TTBTCCEEEEEESCCCCBTTBC
T ss_pred             EEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCceEEEEEEEEECCCCCCC--CCCCCEEEEEECCccccCCccc
Confidence            489999999653 235688999988764322     24578899999999999875  6789999999999999999999


Q ss_pred             eeecCCCCC---CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          76 PACLNRAHN---VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        76 picL~~~~~---~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      |||||....   ..+..|+++|||.+..+.. ..+..|+.+.+.+++...|...+..  -..+...|+|++...   ...
T Consensus       119 PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~-~~~~~L~~~~v~i~~~~~C~~~~~~--~~~i~~~~iCag~~~---~~~  192 (290)
T 1fiw_A          119 PGCLPQFRAGPPRVPQTCWVAGWGFLQENAR-RTSPMLQEARVDLIDLGLCNSTRWY--NGRIRSTNVCAGYPE---GKI  192 (290)
T ss_dssp             CCBCCCTTCCSCCSSCEEEEEESCCSSTTCS-SCCSBCEEEEEEEECHHHHTSTTTT--TTCCCTTEEEEECTT---CSS
T ss_pred             cccCCCccccCcCCCCeEEEEEeccCCCCCC-CCCceeeEEEEEEecHHHhcccccc--CCcCCCCEEEEecCC---CCC
Confidence            999996432   3477899999999865442 3466799999999999999764211  113566788887432   124


Q ss_pred             hhhchhhhhcccCCccccc------ccccceeEeeccccC
Q psy3170         153 HQCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDI  186 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~  186 (525)
                      ..|++++    ++|+.+..      .+.|.+++. ..|+.
T Consensus       193 ~~C~GDS----GGPLv~~~~~~~~~~l~GIvS~g-~~C~~  227 (290)
T 1fiw_A          193 DTCQGDS----GGPLMCKDSAENSYVVVGITSWG-VGCAR  227 (290)
T ss_dssp             BCCTTCT----TCEEEEECSSSSCEEEEEEEEEC-SSSSB
T ss_pred             eeCCCCC----chheEEEECCCCCEEEEEEEEEC-CCCCC
Confidence            5788876    67776643      256777775 45764

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=99.86  E-value=7.7e-22  Score=184.22  Aligned_cols=166  Identities=18%  Similarity=0.269  Sum_probs=127.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC-
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN-   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~-   80 (525)
                      .|||||||+.......+.|++|.+++   ....+.+.|+++++||+|+..    .||||||||++|+.++++|+||||| 
T Consensus        35 ~VLTAAHC~~~~~~~~~~v~~G~~~~---~~~~~~~~v~~i~~hp~y~~~----~~DiALl~L~~~~~~~~~v~picL~~  107 (224)
T 1pq7_A           35 TVLTAAHCVSGYAQSGFQIRAGSLSR---TSGGITSSLSSVRVHPSYSGN----NNDLAILKLSTSIPSGGNIGYARLAA  107 (224)
T ss_dssp             EEEECHHHHTTSCGGGEEEEESCSBS---SSSSEEECEEEEEECTTCBTT----BTCCEEEEESSCCCCBTTBCCCCBCC
T ss_pred             EEEEcHHccCCCCCCceEEEeCccee---cCCCEEEEEEEEEECCCCCCC----CCCEEEEEeCCCCcCCCcccceecCC
Confidence            48999999976555678999998876   335678999999999999753    7899999999999999999999999 


Q ss_pred             -CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          81 -RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        81 -~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                       ......+..|+++|||.+...+. ..+..++.+.+.+++...|...+..   ......++|++...   .....|.+++
T Consensus       108 ~~~~~~~g~~~~v~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~Ca~~~~---~~~~~C~GDS  180 (224)
T 1pq7_A          108 SGSDPVAGSSATVAGWGATSEGGS-STPVNLLKVTVPIVSRATCRAQYGT---SAITNQMFCAGVSS---GGKDSCQGDS  180 (224)
T ss_dssp             TTCCCCTTCEEEEEESCCSSTTCS-CCCSBCEEEEEEEECHHHHHHHHCT---TTSCTTEEEECCTT---CCCBCCTTCT
T ss_pred             cccCCCCCCEEEEEecCCcCCCCC-cccceeeEeEEEEEcHHHhhHhhcC---CCCCCCeEEeecCC---CCCCCCcCCC
Confidence             44456688899999999875542 3566788999999999999776542   13456788887432   1245788776


Q ss_pred             hhcccCCccc-ccccccceeEeeccccC
Q psy3170         160 KIQDESPIAL-APALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~-~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+ ...+.|.+++. ..|+.
T Consensus       181 ----GgPL~~~~g~l~Gi~S~g-~~C~~  203 (224)
T 1pq7_A          181 ----GGPIVDSSNTLIGAVSWG-NGCAR  203 (224)
T ss_dssp             ----TCEEECTTCCEEEEEEEC-SSSSC
T ss_pred             ----CcceECcCCeEEEEEEeC-CCCCC
Confidence                677766 44567777775 46864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=99.86  E-value=1.5e-21  Score=183.76  Aligned_cols=170  Identities=17%  Similarity=0.220  Sum_probs=127.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|++|.+++.......+.+.|+++++||+|+.......||||||||++|+.++++|+|||||.
T Consensus        39 ~VLTAAHC~~~~--~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~  116 (236)
T 1elt_A           39 WVMTAAHCVDSA--RTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPP  116 (236)
T ss_dssp             EEEECHHHHSSC--CCEEEEESCSBTTSCCSCCEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCC
T ss_pred             EEEECHHhhCCc--CceEEEEccccCCCCCCCcEEEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCC
Confidence            489999999653  678999999988666666788999999999999875222278999999999999999999999996


Q ss_pred             CC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ..  ...+..|+++|||.+..++  ..+..++...+.+.+...|...+...  ......++|++..     ....|.+++
T Consensus       117 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~-----~~~~C~GDS  187 (236)
T 1elt_A          117 SNQILPNNNPCYITGWGKTSTGG--PLSDSLKQAWLPSVDHATCSSSGWWG--STVKTTMVCAGGG-----ANSGCNGDS  187 (236)
T ss_dssp             TTCCCCTTCCEEEEESCCSSTTC--CCCSBCEEEECCEECHHHHTSTTTTG--GGSCTTEEEECCS-----SCBCCTTCT
T ss_pred             ccccCCCCCEEEEEeCCCcCCCC--CcChhheEeEeeecCHHHhccccccC--CcCCcceEEecCC-----CCccCCCCC
Confidence            54  3467889999999986544  35677888999999999997753211  1355678888732     145688776


Q ss_pred             hhcccCCcccc--c--ccccceeEee-ccccC
Q psy3170         160 KIQDESPIALA--P--ALVGGVRYVR-TQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~--~--~~~g~v~~~~-~~Cg~  186 (525)
                          ++|+.+.  .  .+.|.+++.. ..|+.
T Consensus       188 ----GgPL~~~~~g~~~l~Gi~S~g~~~~C~~  215 (236)
T 1elt_A          188 ----GGPLNCQVNGSYYVHGVTSFVSSSGCNA  215 (236)
T ss_dssp             ----TCEEEEEETTEEEEEEEEEECCSSCTTC
T ss_pred             ----CCeeEEEECCEEEEEEEEEEeCCCCCCC
Confidence                6777652  2  3567677753 36754

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=99.86  E-value=6.3e-22  Score=187.52  Aligned_cols=170  Identities=19%  Similarity=0.228  Sum_probs=125.3

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+...  ....+.|++|.+++.   ...+.+.|+++++||+|+..  ...||||||||++|+.|+++|+||||
T Consensus        38 ~VLTAAHC~~~~~~~~~~~~v~~g~~~~~---~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picL  112 (245)
T 2f9n_A           38 WVLTAAHCVGPDVKDLATLRVQLREQHLY---YQDQLLPVSRIIVHPQFYII--QTGADIALLELEEPVNISSRVHTVML  112 (245)
T ss_dssp             EEEECGGGGCSSCCCGGGEEEECSCSBTT---TTCCCBCEEEEEECTTCCSS--CCTTCCEEEEESSCCCCCSSSCCCBC
T ss_pred             EEEECHHhCCCCCCCcceEEEEeCCcccc---cCceEEEEEEEEECCCccCC--CCCCcEEEEEeCCCCcCCCCccccCC
Confidence            489999999642  335688999987764   33567889999999999865  67899999999999999999999999


Q ss_pred             CCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-----ccccccceeeccCCcccCCch
Q psy3170          80 NRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-----CDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        80 ~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      |...  ...+..|+++|||.+..++....+..++.+.+.+.+...|...+....     .......|+|++..     ..
T Consensus       113 p~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~~-----~~  187 (245)
T 2f9n_A          113 PPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNS-----QR  187 (245)
T ss_dssp             CCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECCS-----SS
T ss_pred             CCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhhhhhcccccccccccccccccEeecCC-----CC
Confidence            9653  346788999999998765533335578899999999999977553210     01345678888631     23


Q ss_pred             hhhchhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         153 HQCTQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      ..|++++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       188 ~~C~GDS----GgPL~~~~~g~~~l~GI~S~g-~~C~~  220 (245)
T 2f9n_A          188 DSCQGDS----GGPLVCKVNGTWLQAGVVSWG-EGCAQ  220 (245)
T ss_dssp             BCCTTCT----TCEEEEEETTEEEEEEEEEEC-SSSSB
T ss_pred             CcCCCCC----CCceEEEECCEEEEEEEEEeC-CCCCC
Confidence            5688776    67776542    356766665 35754

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=99.86  E-value=2.7e-21  Score=183.55  Aligned_cols=173  Identities=18%  Similarity=0.195  Sum_probs=128.8

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC----ccCCCceee
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP----VEFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~----v~~~~~v~p   76 (525)
                      .|||||||+.... ...+.|++|.+++.......+.+.|+++++||+|+.. ....||||||||++|    +.|+++|+|
T Consensus        34 ~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~DiALl~L~~~~~~~~~~~~~v~p  112 (248)
T 2r0l_A           34 WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVF-NPSDHDLVLIRLKKKGDRCATRSQFVQP  112 (248)
T ss_dssp             EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECTTCCTT-STTTTCCEEEEECCSSSCSSCCBTTBCC
T ss_pred             EEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEeCCccCcC-CCCCCCEEEEEeCCcccccccCCCcEEE
Confidence            4899999997642 3578999999988766666788999999999999862 256899999999999    899999999


Q ss_pred             eecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhh
Q psy3170          77 ACLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        77 icL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      ||||...  ...+..|+++|||.+..... ..+..++.+.+.+++...|......  -......++|++...   .....
T Consensus       113 icLp~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~~~Ca~~~~---~~~~~  186 (248)
T 2r0l_A          113 ICLPEPGSTFPAGHKCQIAGWGHLDENVS-GYSSSLREALVPLVADHKCSSPEVY--GADISPNMLCAGYFD---CKSDA  186 (248)
T ss_dssp             CBCCCTTCCCCTTCEEEEEESCCSSSSCC-SCCSBCEEEEEEBCCHHHHTSTTTT--GGGCCTTEEEESCSS---SCCBC
T ss_pred             EECCCCCCCCCCCCEEEEEEccccCCCCC-CCCchheEEEEeeeCHHHhCCcccc--CCcCCCCEEeECCCC---CCCcC
Confidence            9999743  35678899999999865432 3467889999999999999764221  113456788887532   12356


Q ss_pred             hchhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         155 CTQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      |.+++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       187 C~GDS----GgPL~~~~~g~~~l~GI~S~g-~~C~~  217 (248)
T 2r0l_A          187 CQGDS----GGPLACEKNGVAYLYGIISWG-DGCGR  217 (248)
T ss_dssp             CTTCT----TCEEEEEETTEEEEEEEEEEC-STTTC
T ss_pred             CCCcc----CCeEEEEECCcEEEEEEEEeC-CCCCC
Confidence            88776    67776543    256666665 35753

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=99.86  E-value=2.9e-21  Score=180.35  Aligned_cols=163  Identities=21%  Similarity=0.179  Sum_probs=126.8

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|.+++.......+.+.|.++++||+|+..  +..||||||||++|+.++++++|+|||.
T Consensus        39 ~VLTAAhC~~----~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~pi~l~~  112 (224)
T 3rp2_A           39 FVLTAAHCKG----REITVILGAHDVRKRESTQQKIKVEKQIIHESYNSV--PNLHDIMLLKLEKKVELTPAVNVVPLPS  112 (224)
T ss_dssp             EEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCSS--SCCSCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEEchhcCC----CCcEEEEeccccCcCCCCcEEEEEEEEEECCCccCC--CCCccEEEEEcCCCcccCCcccceecCC
Confidence            4899999983    568999999988766677788999999999999875  6689999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+....  ..+..++...+.+++...|.... .    .....++|++...+   ....|.+++
T Consensus       113 ~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~-~----~~~~~~~Ca~~~~~---~~~~C~GDs  182 (224)
T 3rp2_A          113 PSDFIHPGAMCWAAGWGKTGVRD--PTSYTLREVELRIMDEKACVDYR-Y----YEYKFQVCVGSPTT---LRAAFMGDS  182 (224)
T ss_dssp             TTCCCCTTCEEEEEESSEEETTE--EECSBCEEEEEEEECGGGTTTTT-C----CCTTTEEEECCTTS---CCBCCTTTT
T ss_pred             cccCCCCCCEEEEEeCCCCCCCC--CCCceeeEeeeeecChHHhcccc-c----cCcCCEEEecCCCC---CCeeccCCC
Confidence            554  567889999999986544  34667899999999999997521 1    12455777764321   235687776


Q ss_pred             hhcccCCcccccccccceeEeecccc
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                          ++|+.+...+.|.+++.. .|+
T Consensus       183 ----GgPl~~~~~l~Gi~S~g~-~c~  203 (224)
T 3rp2_A          183 ----GGPLLCAGVAHGIVSYGH-PDA  203 (224)
T ss_dssp             ----TCEEEETTEEEEEEEECC-TTC
T ss_pred             ----CCeEEEcceeeEEEEECC-CCC
Confidence                788887777777777754 364

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=99.86  E-value=1.3e-21  Score=187.12  Aligned_cols=175  Identities=22%  Similarity=0.316  Sum_probs=127.2

Q ss_pred             ceeeeccCccc------CCCCCeEEEEceeecccCCcC-cceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCce
Q psy3170           2 VNNHAAHCITS------PLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~------~~~~~~~v~~G~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v   74 (525)
                      .|||||||+..      .....+.|++|.+++...... .+...|+++++||+|+.. ..+.||||||||++|+.|+++|
T Consensus        37 ~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~DIALl~L~~~v~~~~~v  115 (259)
T 3rm2_H           37 WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYI  115 (259)
T ss_dssp             EEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECTTCBTT-TTCBTCCEEEEESSCCCCBTTB
T ss_pred             EEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeEEEEEEECCCCCCC-CCCCCcEEEEEeCCceEcCCCc
Confidence            48999999853      133568999999887655443 345569999999999832 2568999999999999999999


Q ss_pred             eeeecCCCCC-----CCCCCEEEEeccccccCCcc----cccccceeeeeeecCccccccccccccccccccceeeccCC
Q psy3170          75 KPACLNRAHN-----VKSPTAIASGFGKLNYFECT----QYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSR  145 (525)
Q Consensus        75 ~picL~~~~~-----~~~~~~~v~GWG~~~~~~~~----~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  145 (525)
                      +|||||....     ..+..|+++|||.+......    ..+..++.+.+.+++...|...+..    .....|+|++..
T Consensus       116 ~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~Cag~~  191 (259)
T 3rm2_H          116 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI----RITDNMFCAGYK  191 (259)
T ss_dssp             CCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBCEEEEEEBCCHHHHHHTCSS----CCCTTEEEECCC
T ss_pred             ccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccceEEEEEEeCHHHhhhhhcc----cCCCceEeeecc
Confidence            9999986432     45788999999987643211    2267889999999999999776532    356678888754


Q ss_pred             cccCCchhhhchhhhhcccCCccccc------ccccceeEeeccccC
Q psy3170         146 AKYGEFPHQCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDI  186 (525)
Q Consensus       146 ~~~g~~~~~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~  186 (525)
                      .+.+.....|.+++    ++|+.+..      .+.|.+++. ..|+.
T Consensus       192 ~~~~~~~~~C~GDs----GgPL~~~~~~~~~~~l~GI~S~g-~~C~~  233 (259)
T 3rm2_H          192 PDEGKRGDACEGDS----GGPFVMKSPFNNRWYQMGIVSWG-EGCDR  233 (259)
T ss_dssp             GGGSCCCBCCTTCT----TCEEEEECTTTCCEEEEEEEEEC-SSSSC
T ss_pred             CCCCCCCcccCCCC----CCeeEEEECCCCCEEEEEEEEEC-CCCCC
Confidence            33333346788776    67776543      356766665 45754

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=99.86  E-value=3.4e-21  Score=186.39  Aligned_cols=173  Identities=18%  Similarity=0.195  Sum_probs=129.4

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC----ccCCCceee
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP----VEFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~----v~~~~~v~p   76 (525)
                      .|||||||+.... ...+.|++|.+++.......+.+.|+++++||+|+.. ....||||||||++|    +.|+++|+|
T Consensus        69 ~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~DIALl~L~~~~~~~v~~~~~v~p  147 (283)
T 1yc0_A           69 WVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVF-NPSDHDLVLIRLKKKGDRCATRSQFVQP  147 (283)
T ss_dssp             EEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECTTCCTT-STTTTCCEEEEECCBTTBSSCCBTTBCC
T ss_pred             EEEECHHHcCCCCCCceEEEEEeeeecccCCCceEEEeeEEEEecCccccC-CCCCCceEEEEeCCCccccccccCceee
Confidence            4899999997642 3568999999988766666788999999999999862 256899999999999    889999999


Q ss_pred             eecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhh
Q psy3170          77 ACLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        77 icL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      ||||...  ...+..|+++|||.+..... ..+..++.+.+.+++...|...+..  -......|+|++...   .....
T Consensus       148 icLp~~~~~~~~g~~~~v~GwG~~~~~~~-~~~~~L~~~~v~i~~~~~C~~~~~~--~~~~~~~~iCa~~~~---~~~~~  221 (283)
T 1yc0_A          148 ICLPEPGSTFPAGHKCQIAGWGHLDENVS-GYSSSLREALVPLVADHKCSSPEVY--GADISPNMLCAGYFD---CKSDA  221 (283)
T ss_dssp             CBCCCTTCCCCTTCEEEEEESSCSBTTBC-SCCSBCEEEEEEBCCHHHHTSTTTT--GGGCCTTEEEESCSS---SCCBC
T ss_pred             eECCCCcCCCCCCCEEEEEEeCccCCCCC-ccCchheEeEEEEECHHHhcCcccc--CCcCCCCEEeeCCCC---CCCcc
Confidence            9999743  35678899999999865432 3467899999999999999764221  113556788887532   12357


Q ss_pred             hchhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         155 CTQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      |.+++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       222 C~GDS----GgPL~~~~~g~~~l~GIvS~g-~~C~~  252 (283)
T 1yc0_A          222 CQGDS----GGPLACEKNGVAYLYGIISWG-DGCGR  252 (283)
T ss_dssp             CTTCT----TCEEEEEETTEEEEEEEEEEC-STTTC
T ss_pred             CCCCC----CCceEEEECCcEEEEEEEEEC-CCCCC
Confidence            88776    67776542    256777775 35754

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=99.86  E-value=1.4e-21  Score=184.57  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=125.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCc--ceEEEEEEEECCCCCCCCCCCc--CceEEEEeCCCccCCCceeee
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTD--NIHRVMQNILHPNYTTEGTSQY--HDIALLKIAPPVEFSETLKPA   77 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~--~~~~v~~i~~hp~y~~~~~~~~--nDIALl~L~~~v~~~~~v~pi   77 (525)
                      .|||||||+...  ..+.|++|.+++.......  +.+.|+++++||+|+..  ...  ||||||||++|+.|+++|+||
T Consensus        37 ~VLTAAhC~~~~--~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~~~DIALl~L~~~v~~~~~v~pi  112 (240)
T 1fon_A           37 WVVTAGHCISTS--RTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSN--CVACGNDIALVKLSRSAQLGDKVQLA  112 (240)
T ss_dssp             EEEECGGGCCTT--SCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTT--CGGGCCCCEEEECSSCCCCTTSCCCC
T ss_pred             EEEECHHHCCCC--CceEEEeeeeeccccCCCceeEeeeeeEEEECCCCcCC--CccCCCCEEEEEecCccccCCccccc
Confidence            489999999753  6789999998875443334  67889999999999875  455  999999999999999999999


Q ss_pred             ecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhh
Q psy3170          78 CLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQC  155 (525)
Q Consensus        78 cL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C  155 (525)
                      |||...  ...+..|+++|||.+..++  ..+..++.+.+.+++...|...+...  ......|+|++..     ....|
T Consensus       113 cLp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~-----~~~~C  183 (240)
T 1fon_A          113 NLPPAGDILPNEAPCYISGWGRLYTGG--PLPDKLQQALLPTVDYEHCSQWDWWG--ITVKKTMVCAGGD-----TRSGC  183 (240)
T ss_dssp             BCCCTTCCCCTTCCCEEEECTTCCCSS--SCCSBCEEEECCEECHHHHTSTTTTG--GGCCTTEEEECCS-----SSCST
T ss_pred             CCCCcccCCCCCCeEEEEEEeEcCCCC--CCChhheEEEEeeeCHHHhccceecC--CccccceEeecCC-----CCccc
Confidence            999654  3467889999999986544  35678889999999999997653211  1345678888742     14568


Q ss_pred             chhhhhcccCCccccc-----ccccceeEee-ccccC
Q psy3170         156 TQYSKIQDESPIALAP-----ALVGGVRYVR-TQCDI  186 (525)
Q Consensus       156 ~~~~~~~~~~~l~~~~-----~~~g~v~~~~-~~Cg~  186 (525)
                      ..++    ++|+.+..     .+.|.+++.. ..|+.
T Consensus       184 ~GDs----GgPL~~~~~~~~~~l~Gi~S~g~~~~C~~  216 (240)
T 1fon_A          184 NGDS----GGPLNCPAADGSWQVHGVTSFVSAFGCNT  216 (240)
T ss_dssp             TSCT----TCEEEEECSSSCEEEEEEEEECCTTCSSB
T ss_pred             CCCC----CCeEEeEcCCCCEEEEEEEEEcCCCCCCC
Confidence            8776    67776532     3556666654 36754

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=99.86  E-value=3.2e-21  Score=181.38  Aligned_cols=172  Identities=19%  Similarity=0.208  Sum_probs=131.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceE-EEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIH-RVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~-~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.    ..+.|++|.++........+.. .++.++.||+|+..  .+.||||||||++|+.++++|+|||||
T Consensus        35 ~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~DIALl~L~~~v~~~~~v~pi~l~  108 (234)
T 3s69_A           35 WVLTAAHCDN----TNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDE--VLDKDIMLIKLDSRVSNSEHIVPLSLP  108 (234)
T ss_dssp             EEEECGGGCC----SSCEEEESCCCSSSCCTTCEEECEEEEEECTTCCTTC--TTSSCCEEEEESSCCCCBTTBCCCCCC
T ss_pred             EEEEchhhCC----CCceEEecccccccccCCcceeeceEEEECCCccCCC--CCcccEEEEeeCCcCCCCCcceeeecC
Confidence            4899999984    4578999988776554444444 45566669999865  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+.... ...+..++...+.+.+...|...+...   .....++|++...   .....|.+++ 
T Consensus       109 ~~~~~~~~~~~v~GwG~~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~---~~~~~C~GDS-  180 (234)
T 3s69_A          109 SSPPSVGSVCHIMGWGSITPIK-VTYPDVPYCAYINLLDDAVCQAGYPEL---LTEYRTLCAGILE---GGKDTCGGDS-  180 (234)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSS-CCCCSSCEEEEEEEECHHHHHHHCTTC---CTTSCEEEEECTT---CSCBCCTTCT-
T ss_pred             CCCCCCCCEEEEEECCCCCCCC-cCcccccceeEEeecCHHHHhhhcccc---cCCcceEeccCCC---CCCccCCCCC-
Confidence            8877778999999999986543 245778899999999999998766431   3455678876432   1245788877 


Q ss_pred             hcccCCcccccccccceeEeeccccCCCCC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~~~~~  190 (525)
                         ++|+.+...+.|.+++....|+....+
T Consensus       181 ---GgPL~~~~~l~Gi~S~g~~~C~~~~~p  207 (234)
T 3s69_A          181 ---GGPLICNGQFQGIVSFGAHPCGQGLKP  207 (234)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSTTCTTCC
T ss_pred             ---ccceEEcCEEEEEEEEcccccCCCCCC
Confidence               788888777888888876668643333

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.85  E-value=1.8e-21  Score=165.29  Aligned_cols=93  Identities=25%  Similarity=0.358  Sum_probs=80.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..   ..+.|++|.+++.......+.+.|+++++||+|+..  +..||||||||++|+.|+++|+|||||.
T Consensus        36 ~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp~  110 (131)
T 1yph_C           36 WVVTAAHCGVT---TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSL--TINNDITLLKLSTAASFSQTVSAVCLPS  110 (131)
T ss_dssp             EEEECGGGCCC---TTSEEEESCSBTTCSSSCCEEEEEEEEEECTTCCTT--TCCSCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEECHHHCCC---CCeEEEEeEccCCCCCCceEEEEEEEEEeCCCCCCC--CCCCCEEEEEECCcccCCCcCcceECCC
Confidence            48999999865   567899999887665666788999999999999875  6789999999999999999999999997


Q ss_pred             CCC--CCCCCEEEEeccccc
Q psy3170          82 AHN--VKSPTAIASGFGKLN   99 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~   99 (525)
                      ...  ..+..|+++|||.++
T Consensus       111 ~~~~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C          111 ASDDFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             TTCCCCTTCEEEEEESCCSC
T ss_pred             cccCCCCCCEEEEEcCCccC
Confidence            543  467889999999874

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=99.85  E-value=2.2e-21  Score=182.62  Aligned_cols=171  Identities=18%  Similarity=0.267  Sum_probs=128.2

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeee
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC   78 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pic   78 (525)
                      .|||||||+...  ....+.|++|.+...... ...+.+.|+++++||+|+..  ...||||||||++|+.++++|+|||
T Consensus        35 ~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~hp~y~~~--~~~~DiALl~L~~~~~~~~~v~pic  112 (235)
T 4dgj_A           35 WLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRR--RKDNDIAMMHLEFKVNYTDYIQPIS  112 (235)
T ss_dssp             EEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCB
T ss_pred             EEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEEECCCCCCC--CCCCeEEEEEECCccccCCcccccC
Confidence            489999999653  245689999988765433 34567889999999999875  6789999999999999999999999


Q ss_pred             cCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhc
Q psy3170          79 LNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCT  156 (525)
Q Consensus        79 L~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~  156 (525)
                      ||....  ..+..|+++|||.+...+  ..+..++.+.+.+++...|...+...   .....|+|++...+   ....|.
T Consensus       113 Lp~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~~---~~~~C~  184 (235)
T 4dgj_A          113 LPEENQVFPPGRNCSIAGWGTVVYQG--TTADILQEADVPLLSNERCQQQMPEY---NITENMICAGYEEG---GIDSCQ  184 (235)
T ss_dssp             CCCTTCCCCTTCEEEEEESSBSSTTC--CBCSBCEEEEEEEECHHHHHHHCTTS---CCCTTEEEECCTTC---CCBCCT
T ss_pred             CCCcccCCCCCCEEEEEecccCCCCC--ccchhheEeEeeecCHHHhhhhccCc---cCCCCeEeecCCCC---CCccCC
Confidence            997543  467889999999876554  45678999999999999998765431   34667888864321   235688


Q ss_pred             hhhhhcccCCcccccc----cccceeEeeccccCC
Q psy3170         157 QYSKIQDESPIALAPA----LVGGVRYVRTQCDIL  187 (525)
Q Consensus       157 ~~~~~~~~~~l~~~~~----~~g~v~~~~~~Cg~~  187 (525)
                      +++    ++|+.+...    +.|.+++. ..|+..
T Consensus       185 GDs----GgPl~~~~~~~~~l~Gi~S~g-~~c~~~  214 (235)
T 4dgj_A          185 GDS----GGPLMCQENNRWFLAGVTSFG-YECALP  214 (235)
T ss_dssp             TCT----TCEEEEEETTEEEEEEEEEEC-SSSSCT
T ss_pred             CCC----CCeEEEEECCcEEEEEEEEEc-CCCCCC
Confidence            776    677766433    56766665 457543

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=99.85  E-value=2.5e-21  Score=183.08  Aligned_cols=173  Identities=20%  Similarity=0.215  Sum_probs=128.8

Q ss_pred             ceeeeccCccc--CCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITS--PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~--~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+..  .....+.|++|.+++...  ..+.+.|+++++||+|+.. ..+.||||||||++|+.|+++|+||||
T Consensus        33 ~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~--~~~~~~v~~i~~hp~y~~~-~~~~~DIALl~L~~~v~~~~~v~picL  109 (242)
T 3tvj_B           33 WVLTAAHAVYEQKHDASALDIRMGTLKRLSP--HYTQAWSEAVFIHEGYTHD-AGFDNDIALIKLNNKVVINSNITPICL  109 (242)
T ss_dssp             EEEECHHHHSTTTTCSSCCEEEESCSBTTCS--CCEEEEEEEEEECTTCCTT-SCSTTCCEEEEESSCCCCBTTBCCCBC
T ss_pred             EEEECHHHCCCCCCCcceEEEEeccccccCc--ccceeeEEEEEeCCCCCCC-CCCcCcEEEEEECCccccCCCEecCCc
Confidence            48999999966  344678999998776432  3467889999999999862 256899999999999999999999999


Q ss_pred             CCCC----CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc--ccccccceeeccCCcccCCchh
Q psy3170          80 NRAH----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ--CDILAMPMIIGGSRAKYGEFPH  153 (525)
Q Consensus        80 ~~~~----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~  153 (525)
                      |...    ...+..|+++|||.+..+   ..+..++.+.+.+++...|...+....  -......++|++...+   ...
T Consensus       110 p~~~~~~~~~~~~~~~~~GwG~~~~~---~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~---~~~  183 (242)
T 3tvj_B          110 PRKEAESFMRTDDIGTASGWGLTQRG---FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESG---GKD  183 (242)
T ss_dssp             CCTTGGGGSCTTCEEEEEESCCCTTS---SCCSBCEEEEEEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTC---CSB
T ss_pred             CCCcccccccCCCEEEEEEeCCCCCC---CcCccceEEeeeEEcHHHHHHhhccCCcccccccCCeEEECCCCC---CCc
Confidence            9754    356788999999988642   356788999999999999987654311  1235667888874321   245


Q ss_pred             hhchhhhhcccCCccccc------ccccceeEeeccccCC
Q psy3170         154 QCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDIL  187 (525)
Q Consensus       154 ~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~~  187 (525)
                      .|.+++    ++|+.+..      .+.|.+++....|+..
T Consensus       184 ~C~GDs----GgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~  219 (242)
T 3tvj_B          184 SCRGDS----GGALVFLDSETERWFVGGIVSWGSMNCGEA  219 (242)
T ss_dssp             CCTTCT----TCEEEEEETTTTEEEEEEEEEEEESSTTCT
T ss_pred             cccCCC----CCeEEEEeCCCCcEEEEEEEEeCCCCCCCC
Confidence            688776    67776532      2567777766778643

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=99.85  E-value=4.8e-21  Score=180.18  Aligned_cols=170  Identities=17%  Similarity=0.173  Sum_probs=131.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcce-EEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.    ..+.|++|.++........+. ..+.++++||+|+..  .+.||||||||++|+.++++|+|||||
T Consensus        37 ~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~DIALl~L~~~v~~~~~v~pi~L~  110 (234)
T 3s9c_A           37 WVLTAAHCDR----RNIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPN--GLDKDIMLIRLRRPVTYSTHIAPVSLP  110 (234)
T ss_dssp             EEEECGGGCC----TTEEEEESCSSSSSCCTTCEEECEEEEECCSSCSSTT--CGGGCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEEchhhcC----CCceEEEeecccccccCCcceEEeeeEEEeCCCCCCC--CCcCceEEEEECCccccCCcccccccC
Confidence            4899999984    468999998877655444444 445666779999865  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+...   ..+..++...+.+++...|...+..   ......++|++...+   ....|++++ 
T Consensus       111 ~~~~~~~~~~~v~GwG~~~~~---~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~Ca~~~~~---~~~~C~GDS-  180 (234)
T 3s9c_A          111 SRSRGVGSRCRIMGWGKISTT---TYPDVPHCTNIFIVKHKWCEPLYPW---VPADSRTLCAGILKG---GRDTCHGDS-  180 (234)
T ss_dssp             SSCCCTTCEEEEEESSCSBTT---BCCSSCEEEEEEEECGGGTTTTCTT---SCTTSSEEEEECTTS---SCBCCTTCT-
T ss_pred             CCCCCCCCeEEEEeeCCCCCC---CCCccccccceEecCHHHhhhcccC---CCCCcceEEeecCCC---CCccCCCCC-
Confidence            877777899999999988654   3567889999999999999887643   135567888864321   245788877 


Q ss_pred             hcccCCcccccccccceeEeeccccCCCCC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~~~~~  190 (525)
                         ++|+.+...+.|.+++....|+....+
T Consensus       181 ---GgPl~~~~~l~Gi~S~g~~~C~~~~~p  207 (234)
T 3s9c_A          181 ---GGPLICNGEMHGIVAGGSEPCGQHLKP  207 (234)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSTTCTTCC
T ss_pred             ---CCeEEEeCCcEEEEEEeCCCCCCCCCC
Confidence               788888777888888876668643333

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=99.85  E-value=6.5e-21  Score=179.76  Aligned_cols=174  Identities=17%  Similarity=0.165  Sum_probs=133.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcc-eEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.    ..+.|++|.++........+ ...+.+++.||+|+..  .+.||||||||++|+.++++|+|||||
T Consensus        37 ~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~DIALl~L~~~v~~~~~v~pi~l~  110 (238)
T 4e7n_A           37 WVLTAAHCDR----KNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYT--LWDKDIMLIRLDSPVKNSKHIAPFSLP  110 (238)
T ss_dssp             EEEECGGGCC----SSCEEEESCSCSSSCCTTCEEECEEEEECSSTTCCCC--SSSCCCEEEEESSCCCCBTTBCCCCCC
T ss_pred             EEEEhHHcCC----CCCeEEeceeeccccCCCceeEeeeeeEEcCCCCCCC--CCCCcEEEEEeCCCccCCCceeeeeCC
Confidence            4899999984    45789999887765444444 3456677779999865  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+.... ...+..++...+.+++...|...+... -......++|++...   .....|++++ 
T Consensus       111 ~~~~~~~~~~~v~GwG~~~~~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~Ca~~~~---~~~~~C~GDS-  184 (238)
T 4e7n_A          111 SSPPSVGSVCRIMGWGRISPTE-GTYPDVPHCVNINLLEYEMCRAPYPEF-ELPATSRTLCAGILE---GGKDTCKGDS-  184 (238)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSS-CCCCSSCEEEEEEEECGGGGTTTCGGG-CCCSCCSEEEEECTT---CSCBCCTTCT-
T ss_pred             CCCCCCCCEEEEEECCCCCCCC-CCCCccceEeeccccCHHHHhhhcccc-cCCCCCCeEEeCCCC---CCCccCCCCC-
Confidence            8877778999999999986543 245778999999999999998876431 123556788886432   1235788877 


Q ss_pred             hcccCCcccccccccceeEeeccccCCCCC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~~~~~  190 (525)
                         ++|+.+...+.|.+++....|+....+
T Consensus       185 ---GgPL~~~~~l~Gi~S~g~~~C~~~~~p  211 (238)
T 4e7n_A          185 ---GGPLICNGQFQGIASWGDDPCAQPHKP  211 (238)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSTTCTTCC
T ss_pred             ---CcceEECCEEEEEEEEeCCCCCCCCCC
Confidence               788888777888888876678644333

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=99.85  E-value=3.5e-21  Score=182.70  Aligned_cols=174  Identities=21%  Similarity=0.222  Sum_probs=129.8

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC----ccCCCceee
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP----VEFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~----v~~~~~v~p   76 (525)
                      .|||||||+.+. ....+.|++|.+++.......+.+.|+++++||+|+.......||||||||++|    +.+++.|+|
T Consensus        40 ~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~p  119 (247)
T 3mhw_U           40 WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT  119 (247)
T ss_dssp             EEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCC
T ss_pred             EEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccc
Confidence            489999999764 335689999999887766677889999999999998753336799999999999    789999999


Q ss_pred             eecCCC--CCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhh
Q psy3170          77 ACLNRA--HNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        77 icL~~~--~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      +|||..  ....+..|+++|||.+..... ..+..++...+.+.+...|...+...  ......|+|++...+   ....
T Consensus       120 i~lp~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~~~---~~~~  193 (247)
T 3mhw_U          120 ISLPSMYNDPQFGTSCEITGFGKENSTDY-LYPEQLKMTVVKLISHRECQQPHYYG--SEVTTKMLCAADPQW---KTDS  193 (247)
T ss_dssp             CBCCCTTCCCCTTCEEEEEESCCSSTTCS-SCCSBCEEEEEEEECHHHHTSTTTTG--GGCCTTEEEEECTTS---CCBC
T ss_pred             cccCCCcCCCCCCCEEEEEecCCcCCCCc-ccchhheeeEEEEEChHHhcCccccC--CcCCCCeEecCCCCC---CCcc
Confidence            999974  345578899999998865442 35778899999999999997653221  235667888765321   2356


Q ss_pred             hchhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         155 CTQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      |.+++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       194 C~GDS----GgPl~~~~~~~~~l~Gi~S~g-~~c~~  224 (247)
T 3mhw_U          194 CQGDS----GGPLVCSLQGRMTLTGIVSWG-RGCAL  224 (247)
T ss_dssp             CTTCT----TCEEEEEETTEEEEEEEEEEC-SSSSB
T ss_pred             CCCCC----CCeEEEEECCCEEEEEEEEEC-CCCCC
Confidence            88776    67776543    256766665 45754

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=99.85  E-value=5.6e-21  Score=179.38  Aligned_cols=167  Identities=22%  Similarity=0.298  Sum_probs=123.5

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+... ....+.|++|....    ...+.+.|+++++||+|+..  ...||||||||++|+.|+++|+|||||
T Consensus        35 ~VLTAAhC~~~~~~~~~~~v~~G~~~~----~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~~~~~~~v~picLp  108 (232)
T 2oq5_A           35 WLVSAAHCFTTYKNPARWTASFGVTIK----PSKMKRGLRRIIVHEKYKHP--SHDYDISLAELSSPVPYTNAVHRVCLP  108 (232)
T ss_dssp             EEEECGGGGSSCCCGGGEEEEESSBST----TCSEEEEEEEEEECTTCCTT--CCTTCCEEEEESSCCCCCSSSCCCBCC
T ss_pred             EEEECHHHcCCCCCCceEEEEEeeEEC----CCceEEeEEEEEeCCCCCCC--CCCCCEEEEEecCCCccCCceeEeECC
Confidence            489999999763 33568899997643    34567899999999999865  678999999999999999999999999


Q ss_pred             CCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ...  ...+..|+++|||.+...+  ..+..++.+.+.+++...|...+..  -......|+|++...+   ....|.++
T Consensus       109 ~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~--~~~~~~~~~Ca~~~~~---~~~~C~GD  181 (232)
T 2oq5_A          109 DASYEFQPGDVMFVTGFGALKNDG--YSQNHLRQAQVTLIDATTCNEPQAY--NDAITPRMLCAGSLEG---KTDACQGD  181 (232)
T ss_dssp             CTTCCCCTTCEEEEEESCCSSTTC--CCCSBCEEEEEEEECHHHHTSTTTT--TTCCCTTEEEEECTTC---SSBCCTTC
T ss_pred             CccccCCCCCEEEEEECCccCCCC--CCCceeeEeEEEEeCHHHcCCcccc--CCccCCCEEeecCCCC---CCccCCCC
Confidence            654  3457889999999987554  3466788899999999999764321  1234567888875321   23568877


Q ss_pred             hhhcccCCccccc-----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP-----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~-----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+..     .+.|.+++. ..|+.
T Consensus       182 s----GgPL~~~~~~~~~~l~GI~S~g-~~C~~  209 (232)
T 2oq5_A          182 S----GGPLVSSDARDIWYLAGIVSWG-DECAK  209 (232)
T ss_dssp             T----TCEEEEECTTSCEEEEEEEEEC-SSSSB
T ss_pred             C----CCcEEEECCCCCEEEEEEEEeC-CCCCC
Confidence            6    67776533     256766665 35753

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=99.85  E-value=1.1e-20  Score=176.07  Aligned_cols=160  Identities=19%  Similarity=0.263  Sum_probs=119.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+.....+.|++|.+++...+...+.+.|.+++.| +|+..  ...||||||||++|+.|+++|+|||||.
T Consensus        38 ~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h-~y~~~--~~~~DiALl~L~~~~~~~~~v~picL~~  114 (221)
T 1fuj_A           38 FVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLN-NYDAE--NKLNDILLIQLSSPANLSASVATVQLPQ  114 (221)
T ss_dssp             EEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEEC-CCBTT--TTBCCCEEEEESSCCCCCSSCCCCBCCC
T ss_pred             EEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEeC-CCCCC--CCcccEEEEEeCCccccCCcceeeECCC
Confidence            48999999977555678999999887666666788999999999 99865  6789999999999999999999999997


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|+++|||.+...+  ..+..++...+.+. ...|...            ++|++...   .....|.+++
T Consensus       115 ~~~~~~~~~~~~~~GwG~~~~~~--~~~~~l~~~~~~~~-~~~C~~~------------~~Ca~~~~---~~~~~C~GDS  176 (221)
T 1fuj_A          115 QDQPVPHGTQCLAMGWGRVGAHD--PPAQVLQELNVTVV-TFFCRPH------------NICTFVPR---RKAGICFGDS  176 (221)
T ss_dssp             TTCCCCTTCEEEEEESSBSCSSS--CBCSBCEEEEEEEE-CTTCCTT------------EEEEECSS---SSCBCCTTCT
T ss_pred             CcCCCCCCCEEEEEEeCCCCCCC--CHHHHhhcccceEE-eeecCCc------------eeeeccCC---CCCCCCCCCC
Confidence            654  567889999999987544  34667788888877 5666542            44544321   1234677766


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...+.|.+++...-|+.
T Consensus       177 ----GgPL~~~~~l~Gi~s~~~~gC~~  199 (221)
T 1fuj_A          177 ----GGPLICDGIIQGIDSFVIWGCAT  199 (221)
T ss_dssp             ----TCEEEETTEEEEEEEECSSSTTC
T ss_pred             ----CCeeEECCEEeEEEEEeccCCCC
Confidence                67777655566766663322753

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=99.85  E-value=3.1e-21  Score=181.58  Aligned_cols=169  Identities=14%  Similarity=0.171  Sum_probs=132.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCC-ceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSE-TLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~-~v~picL~   80 (525)
                      .|||||||+.......+.|++|.+++.   ...+.+.|.++++| +|+..  ...||||||+|++|+.+++ .++|||||
T Consensus        35 ~VLTAAHC~~~~~~~~~~v~~G~~~~~---~~~~~~~v~~i~~h-~y~~~--~~~~DiAll~L~~~v~~~~~~v~pi~Lp  108 (235)
T 3h7t_A           35 FVITAAQCVDGTKPSDISIHYGSSYRT---TKGTSVMAKKIYIV-RYHPL--TMQNNYAVIETEMPIKLDDKTTKKIELP  108 (235)
T ss_dssp             EEEECHHHHTTCCGGGEEEEESCSBSS---SSSEEEEEEEEEEC-SCBTT--TTBTCCEEEEESSCCCCCSSSCCCCBCC
T ss_pred             EEEECHHHCCCCCCCeeEEEcCccccc---cCCceeeeeeEEee-ecCCC--CCCCCeEEEEeccccccCCccccceecC
Confidence            489999999766567899999988764   34478999999999 99875  6789999999999999999 99999999


Q ss_pred             CCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-ccccccceeeccCCcccCCchhhhch
Q psy3170          81 RAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-CDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        81 ~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      ...  ...+..|+++|||.+..... ..+..++.+.+.+++...|...+.... -......++|++...   .....|.+
T Consensus       109 ~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~G  184 (235)
T 3h7t_A          109 SLLYDPEPDTSVLVSGWGSTNFKSL-EYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEY---DETYIGYG  184 (235)
T ss_dssp             CTTCCCCTTCEEEEEECCCSSTTCC-CCCSBCEEEEEEEECHHHHHHHHHTTTCGGGCSTTEEEECBTT---TTBBCCTT
T ss_pred             ccccCCCCCCeEEEEecCCCCCCCC-chhHHHhhCCCceeCHHHHHHHhhhcccCccccCCeEecCCCC---CCCccccC
Confidence            765  56788899999999875542 457789999999999999987654321 112567789987542   13457887


Q ss_pred             hhhhcccCCcccccccccceeEeecccc
Q psy3170         158 YSKIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       158 ~~~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                      ++    ++|+.+...+.|.+++.. .|+
T Consensus       185 Ds----GgPl~~~~~l~Gi~S~g~-~C~  207 (235)
T 3h7t_A          185 DA----GDPAVQNGTLVGVASYIS-SMP  207 (235)
T ss_dssp             CT----TCEEEETTEEEEEECCCT-TCC
T ss_pred             CC----CCceeeCCeEEEEEEecC-CCC
Confidence            76    788887777777777753 475

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.85  E-value=3.7e-21  Score=181.87  Aligned_cols=150  Identities=18%  Similarity=0.139  Sum_probs=101.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCC--CceEEEEEEEeeccc----ccccceEEEEEEEeCCCCCCCCCCcccceEEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSY----SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK  352 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~v~~g~~~~~~~----~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~  352 (525)
                      .++|+|+||+++||||||||+.....  ..+.++.|.. ....    ........+..+..|| |+     ..+|||||+
T Consensus        47 ~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~v~~G~~-~~~~~~~~~~~~~~~~~~~i~~hp-~~-----~~~DiALLk  119 (246)
T 1qtf_A           47 STLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQN-RDAEKNEFPTPYGKFEAEEIKESP-YG-----QGLDLAIIK  119 (246)
T ss_dssp             TEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCC-CCTTTTCCCCTTCCEEEEEEESCT-TC-----TTSCCEEEE
T ss_pred             CceEEEEEEECCEEEECHHhCCCCCCCceEEEEecCcc-ccccccccccCCceEEEEEEEeCC-CC-----CCCCEEEEE
Confidence            47899999999999999999965322  3455556654 1110    0011244588888999 64     247999999


Q ss_pred             ECCCc---ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeC
Q psy3170         353 IAPPV---EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM  428 (525)
Q Consensus       353 L~~~~---~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~  428 (525)
                      |+.++   .|++.++|+||+... ...+..++++||+.....    + .+....+.+.+     .        .      
T Consensus       120 l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~----~-~~~~~~~~~~~-----~--------~------  175 (246)
T 1qtf_A          120 LKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSA----Y-SLYQSQIEMFN-----D--------S------  175 (246)
T ss_dssp             ECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTST----T-CCEEEEEEESS-----S--------S------
T ss_pred             EeCCccccccccceeeeecCCccccCCCCEEEEEECCCCCCC----c-eeEeeeeeecC-----c--------E------
Confidence            99998   566679999998653 357889999999753221    1 22233344332     0        0      


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ  464 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~  464 (525)
                      ....+.|.|||||||+..     .+.|+||+||+..
T Consensus       176 ~~~~~~~~GdSGGPlv~~-----~g~lvGI~s~g~~  206 (246)
T 1qtf_A          176 QYFGYTEVGNSGSGIFNL-----KGELIGIHSGKGG  206 (246)
T ss_dssp             BEESCCCGGGTTCEEECT-----TCCEEEEEEEEET
T ss_pred             EEeCCCCCCCchhheECC-----CCEEEEEEecccc
Confidence            002368999999999852     3469999999853

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.84  E-value=4.9e-21  Score=176.62  Aligned_cols=170  Identities=14%  Similarity=0.052  Sum_probs=107.4

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCCCC-CceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC---
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSPLG-KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP---  355 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~---  355 (525)
                      ++|+|+||+++||||||||+..... ..+.|++|..     ........+.+++.   |+.     .+|||||+|+.   
T Consensus        23 ~~c~G~lI~~~~VLTaaHcv~~~~~~~~i~v~~~~~-----~~~g~~~~~~~v~~---~~~-----~~DiAll~l~~~~~   89 (210)
T 2as9_A           23 KDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGD-----KGNGGIYKIKSISD---YPG-----DEDISVMNIEEQAV   89 (210)
T ss_dssp             SSCEEEEEETTEEEECHHHHHHCCTTCEEEESCCGG-----GCCSCEEEEEEEEE---CSS-----SSSCEEEEECSEEE
T ss_pred             eeEEEEEEeCCEEEECHhHCCccCCCCEEEEEeCcc-----cCCCCEEEEEEEEe---CCC-----CCcEEEEEecCccc
Confidence            4699999999999999999864311 2344433321     11223334555554   322     37999999988   


Q ss_pred             -----CcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCC
Q psy3170         356 -----PVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAG  430 (525)
Q Consensus       356 -----~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~  430 (525)
                           |+.|++.++|++|+ .....+..++++||+......    ..+ ...+.+++..         ...++|..    
T Consensus        90 ~~~~~~~~~~~~v~~i~l~-~~~~~g~~v~v~G~p~~~~~~----~~l-~~~~g~v~~~---------~~~~i~~~----  150 (210)
T 2as9_A           90 ERGPKGFNFNENVQAFNFA-KDAKVDDKIKVIGYPLPAQNS----FKQ-FESTGTIKRI---------KDNILNFD----  150 (210)
T ss_dssp             EEETTEEEGGGSCCCCCBC-SCCCTTCEEEEEECSSTTTTT----SCC-EEEEEEEEEE---------ETTEEEEE----
T ss_pred             cccccccccccccceeecC-CCCCCCCEEEEEeCCCCCCCC----cce-EEeeeEEccc---------cCCeEEEc----
Confidence                 68888899999997 345678899999998643211    122 3344444321         13567764    


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEc-CCchhhhcccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRV-SYYVPWIVHTV  488 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v-~~~~~WI~~~i  488 (525)
                       ...|.|||||||++.     +..|+||+||+........ ..|+.+ ....+|++..-
T Consensus       151 -~~~~~GdSGGPlv~~-----~g~lvGI~s~g~~~~~~~~-~~~~~~~~~i~~f~~~~~  202 (210)
T 2as9_A          151 -AYIEPGNSGSPVLNS-----NNEVIGVVYGGIGKIGSEY-NGAVYFTPQIKDFIQKHI  202 (210)
T ss_dssp             -CCCCTTCTTCEEECT-----TSCEEEEECCSCCCTTCSS-EEEEECCHHHHHHHHTTC
T ss_pred             -CccCCCCccCcEECC-----CCeEEEEEecccccCCccc-cccEEEcHHHHHHHHHhh
Confidence             368999999999863     2359999999954221222 235554 34556665543

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=99.84  E-value=2.7e-21  Score=181.11  Aligned_cols=165  Identities=16%  Similarity=0.198  Sum_probs=129.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCC-ceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSE-TLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~-~v~picL~   80 (525)
                      .|||||||+.......+.|++|.+++... ...+.+.|++++.| +|+..  +..||||||||++|+.+++ .++|||||
T Consensus        37 ~VLTAAHC~~~~~~~~~~v~~g~~~~~~~-~~~~~~~v~~i~~h-~y~~~--~~~~DIALl~L~~~v~~~~~~v~pi~lp  112 (228)
T 3h7o_A           37 FVLTAAHCVFDQKPETIVIQYESTNLWED-PGKSDPYVSHVYLS-FYRQE--TMENDIAILELSRPLKLDGLKSKPAKLP  112 (228)
T ss_dssp             EEEECHHHHTTSCGGGCEEEESCSBTTTB-CCEEECCEEEEEES-SCBTT--TTBTCCEEEEESSCCCCCSSSSCCCBCC
T ss_pred             EEEEcHHhcccCCCCcEEEEecccccccC-CCceeeeEEEEEcc-ccCCC--CccCCEEEEEECCcccccccccccccCC
Confidence            48999999976656789999998877533 33467889999999 99865  6789999999999999999 99999999


Q ss_pred             CCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ...  ...+..|+++|||.+....  ..+..++.+.+.+++...|...+..   ......++|++...     ...|+++
T Consensus       113 ~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~~Ca~~~~-----~~~C~GD  182 (228)
T 3h7o_A          113 DIEFRPKTGSDVLVSGYGDGQTMD--PKDHDLKSAQLTVVDLDECRTKYGP---IFLSLQVFCAQKVG-----VSLESGD  182 (228)
T ss_dssp             CTTCCCCTTCEEEEEECCCSSCSC--GGGGBCEEEEEEEECHHHHHHHHTT---SCCCSSEEEEECTT-----CCCCGGG
T ss_pred             ccccCCCCCCeeEEEEEecCCCCC--CcccccccceeEEEcHHHHHHHhcC---ccCCceEEecCCCC-----CcCCCCC
Confidence            765  4668889999999987654  4567899999999999999876543   13556788886532     4568877


Q ss_pred             hhhcccCCcccccccccceeEeecccc
Q psy3170         159 SKIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       159 ~~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                      +    ++|+.+...+.|.+++. ..|+
T Consensus       183 s----GgPl~~~~~l~Gi~S~g-~~c~  204 (228)
T 3h7o_A          183 A----GDPTVQQDTLVGVAAYF-PKRP  204 (228)
T ss_dssp             T----TCEEEETTEEEEEECCC-TTCC
T ss_pred             C----CCcceecCeEEEEEeec-CcCC
Confidence            6    78887766677777664 3364

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=99.84  E-value=9.7e-21  Score=189.95  Aligned_cols=170  Identities=22%  Similarity=0.319  Sum_probs=125.6

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccCCcCcceEEEEEEEECCCC------CCCCCCCcCceEEEEeCCCccCCCc
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY------TTEGTSQYHDIALLKIAPPVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y------~~~~~~~~nDIALl~L~~~v~~~~~   73 (525)
                      .|||||||+...  ....+.|++|.+++..  ...+.+.|+++++||+|      +..  ...||||||||++|+.|+++
T Consensus       152 ~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~--~~~~~~~V~~i~~Hp~y~~~~~~~~~--~~~nDIALlkL~~pv~~~~~  227 (372)
T 1z8g_A          152 WVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSE--ENSNDIALVHLSSPLPLTEY  227 (372)
T ss_dssp             EEEECGGGCCGGGCCGGGEEEEESCSBTTC--TTSEEECEEEEEEETTCGGGTCTTCC--CCTTCCEEEEESSCCCCCSS
T ss_pred             EEEEChhhcCCCCCccceEEEEEeeEeccC--CCCcEEEEEEEEECCCccccccCCCC--CCCccEEEEEECCCCCCCCc
Confidence            489999999432  3356899999886643  33457899999999999      433  67899999999999999999


Q ss_pred             eeeeecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCc
Q psy3170          74 LKPACLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEF  151 (525)
Q Consensus        74 v~picL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~  151 (525)
                      |+|||||...  ...+..|+++|||.+...+  ..+..|+.+.+++++...|......  -..+...|+|++...   ..
T Consensus       228 v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~--~~~~~L~~~~v~ii~~~~C~~~~~~--~~~i~~~~iCag~~~---~~  300 (372)
T 1z8g_A          228 IQPVCLPAAGQALVDGKICTVTGWGNTQYYG--QQAGVLQEARVPIISNDVCNGADFY--GNQIKPKMFCAGYPE---GG  300 (372)
T ss_dssp             CCCCBCCCTTCCCCTTCEEEEEESSBSSTTS--CBCSBCEEEEEEEECHHHHTSTTTT--TTCCCTTEEEESCTT---CS
T ss_pred             eeccccCCcccCCCCCCEEEEEecCCCCCCC--CCCceeeEEEEEecChHHhCcchhc--CCcCCCCeEeeecCC---CC
Confidence            9999999653  3457889999999987654  3567899999999999999764211  113566789987532   12


Q ss_pred             hhhhchhhhhcccCCccccc--------ccccceeEeeccccCC
Q psy3170         152 PHQCTQYSKIQDESPIALAP--------ALVGGVRYVRTQCDIL  187 (525)
Q Consensus       152 ~~~C~~~~~~~~~~~l~~~~--------~~~g~v~~~~~~Cg~~  187 (525)
                      ...|++++    ++|+.+..        .+.|.+++. ..|+..
T Consensus       301 ~d~C~GDS----GGPLv~~~~~~~~~~~~lvGIvS~G-~~C~~~  339 (372)
T 1z8g_A          301 IDACQGDS----GGPFVCEDSISRTPRWRLCGIVSWG-TGCALA  339 (372)
T ss_dssp             CBCCTTCT----TCEEEEEECTTSSCEEEEEEEEEEB-SSSSCT
T ss_pred             CcCCCCCC----ccceEeccCcCCCCCEEEEEEEEeC-CCCCCC
Confidence            45788876    67776543        256777775 458643

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.84  E-value=5.9e-21  Score=194.24  Aligned_cols=172  Identities=19%  Similarity=0.215  Sum_probs=128.8

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+...  ....+.|++|.++.  .+...+.+.|+++++||+|+.. ..+.||||||||++|+.|+++|+||||
T Consensus       194 ~VLTAAHC~~~~~~~~~~~~V~~G~~~~--~~~~~~~~~v~~i~~Hp~y~~~-~~~~~DIALl~L~~~v~~~~~v~picL  270 (403)
T 1zjk_A          194 WVLTAAHAVYEQKHDASALDIRMGTLKR--LSPHYTQAWSEAVFIHEGYTHD-AGFDNDIALIKLNNKVVINSNITPICL  270 (403)
T ss_dssp             EEEECHHHHGGGTTCSTTEEEEESCSBT--TCSCCEEEEEEEEEECTTCCTT-SCCTTCCEEEEESSCCCCBTTBCCCBC
T ss_pred             EEEEcHHhCCCCCCCcceEEEEcccccc--CCCCceEEeEEEEEECCCCCCC-CCCcccEEEEEeCCcCcCCCceecccC
Confidence            489999999663  24678999998853  2345678999999999999863 146899999999999999999999999


Q ss_pred             CCCC----CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc--ccccccceeeccCCcccCCchh
Q psy3170          80 NRAH----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ--CDILAMPMIIGGSRAKYGEFPH  153 (525)
Q Consensus        80 ~~~~----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~  153 (525)
                      |...    ...+..|+|+|||.+..+   ..+..|+.+.+.+++...|...+....  -..+...|+|++...+   ...
T Consensus       271 p~~~~~~~~~~~~~~~v~GWG~~~~~---~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~---~~~  344 (403)
T 1zjk_A          271 PRKEAESFMRTDDIGTASGWGLTQRG---FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESG---GKD  344 (403)
T ss_dssp             CCGGGGGGSSTTCEEEEEESCTTSSS---CCCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSC---CTT
T ss_pred             CCcccccccCCCCeEEEEcCCcCCCC---ccCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCC---CCC
Confidence            9654    345788999999998654   356789999999999999987654310  1135678999875421   346


Q ss_pred             hhchhhhhcccCCccccc------ccccceeEeeccccC
Q psy3170         154 QCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDI  186 (525)
Q Consensus       154 ~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~  186 (525)
                      .|++++    ++|+.+..      .+.|.+++....|+.
T Consensus       345 ~C~GDS----GGPL~~~~~~~~~~~l~GIvS~g~~~C~~  379 (403)
T 1zjk_A          345 SCRGDS----GGALVFLDSETERWFVGGIVSWGSMNCGE  379 (403)
T ss_dssp             SCSCST----TCEEEEEETTTTEEEEEEEEEEECSCC--
T ss_pred             CCcCCC----CccEEEEECCCCcEEEEEEEEECCCCCCC
Confidence            788877    77776532      256777776567863

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=199.72  Aligned_cols=177  Identities=21%  Similarity=0.304  Sum_probs=129.8

Q ss_pred             ceeeeccCccc------CCCCCeEEEEceeecccCCc-CcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCce
Q psy3170           2 VNNHAAHCITS------PLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~------~~~~~~~v~~G~~~~~~~~~-~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v   74 (525)
                      .|||||||+..      .....+.|++|.+++..... ..+.+.|+++++||+|+.. .++.||||||||++|+.|+++|
T Consensus       202 ~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~-~~~~nDIALLkL~~pv~~s~~v  280 (424)
T 3nxp_A          202 WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR-ENLDRDIALMKLKKPVAFSDYI  280 (424)
T ss_dssp             EEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEECEEEEEECTTCBTT-TTSBTCCEEEEESSCCCCCSSC
T ss_pred             EEEEhHHhcCccccccccCcccEEEEeCcccccccCCCceeEEEEEEEEeCCCCCCC-CCCcCCeEEEEecCccccCCcc
Confidence            48999999852      23457899999998765443 3456789999999999832 2678999999999999999999


Q ss_pred             eeeecCCCCC-----CCCCCEEEEeccccccC----CcccccccceeeeeeecCccccccccccccccccccceeeccCC
Q psy3170          75 KPACLNRAHN-----VKSPTAIASGFGKLNYF----ECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSR  145 (525)
Q Consensus        75 ~picL~~~~~-----~~~~~~~v~GWG~~~~~----~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~  145 (525)
                      +|||||....     ..+..|+|+|||.+...    .....+..|+.+.+.+++...|...+..    .+...|+|++..
T Consensus       281 ~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~~~~~L~~~~v~ii~~~~C~~~~~~----~i~~~~iCAg~~  356 (424)
T 3nxp_A          281 HPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI----RITDNMFCAGYK  356 (424)
T ss_dssp             CCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----CCSBCEEEEEEBCCHHHHHHTCSS----CCCTTEEEESCC
T ss_pred             cccCCCCcccccccccCCCeEEEEecCCCCccCccccCCCCCccceEEEeeEEcHHHhhhhccC----cCCCCeEecccC
Confidence            9999996532     35788999999987532    0112367899999999999999876532    467789999864


Q ss_pred             cccCCchhhhchhhhhcccCCccccc------ccccceeEeeccccCCC
Q psy3170         146 AKYGEFPHQCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDILA  188 (525)
Q Consensus       146 ~~~g~~~~~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~~~  188 (525)
                      .+.+.....|++++    ++||.+..      .+.|.+++. ..|+...
T Consensus       357 ~~~~~~~d~C~GDS----GGPLv~~~~~~~~~~l~GIvS~G-~~C~~~~  400 (424)
T 3nxp_A          357 PDEGKRGDACEGDS----GGPFVMKSPFNNRWYQMGIVSWG-EGCDRDG  400 (424)
T ss_dssp             CBTTBCCCTTCSCT----TCEEEEECTTTCCEEEEEEECCS-SCTTTCC
T ss_pred             CCCCCCCccCCCcC----CCceEEEECCCCcEEEEEEEEeC-CCCCCCC
Confidence            33333457899887    78887642      246766665 4676433

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.83  E-value=3.9e-21  Score=153.59  Aligned_cols=92  Identities=33%  Similarity=0.643  Sum_probs=81.0

Q ss_pred             ccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCce
Q psy3170         394 ESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPA  472 (525)
Q Consensus       394 ~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~  472 (525)
                      .+..|+++.+++++.++|++.+.. +.+.||||+.  .+.+.|.|||||||++..++  +|+|+||+|||..|+..+.|+
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~~i~~~~iCa~~--~~~~~C~GDSGGPL~~~~~~--~~~l~GIvS~g~~c~~~~~p~   78 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNG--AWTLVGIVSWGSSTCSTSTPG   78 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGGGCCTTEEEEEC--SSCBCCTTCTTCEEEEEETT--EEEEEEEEEECCTTCCTTSEE
T ss_pred             cCccceEEEEEECCHHHhhHHhcCCCCCceEeecC--CCCCCCcCCCCCcEEEEeCC--eEEEEEEEEeCCCCCCCCCCe
Confidence            456799999999999999887653 7789999983  46789999999999987644  899999999999888778899


Q ss_pred             EEEEcCCchhhhccccc
Q psy3170         473 IYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       473 v~t~v~~~~~WI~~~i~  489 (525)
                      +||||++|++||++++.
T Consensus        79 vyt~V~~y~~WI~~~~~   95 (97)
T 1yph_E           79 VYARVTALVNWVQQTLA   95 (97)
T ss_dssp             EEEEHHHHHHHHHHHHH
T ss_pred             EEEEHHHhHHHHHHHHc
Confidence            99999999999999875

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=99.83  E-value=4.7e-21  Score=185.24  Aligned_cols=128  Identities=14%  Similarity=0.174  Sum_probs=100.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|++|.+++   +...+.+.|.++++||+|+..  ++.||||||||++|+.|+++|+|||||.
T Consensus        88 ~VLTAAHC~~~~--~~~~V~~G~~~~---~~~~~~~~v~~i~~Hp~y~~~--~~~nDIALl~L~~pv~~~~~v~picLp~  160 (283)
T 3f1s_B           88 FVLTTAKCSLLH--RNITVKTYFNRT---SQDPLMIKITHVHVHMRYDAD--AGENDLSLLELEWPIQCPGAGLPVCTPE  160 (283)
T ss_dssp             EEEECHHHHTSC--SSCEEEECTTC----CCCCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCTTTTCCCCBCCC
T ss_pred             EEEEcHHhcCcc--CceEEEEeeeeC---CCCcEEEEeEEEEECCCCCCC--CCCCCEEEEEeCCcccCCCCEEeEECCC
Confidence            489999999653  578999998765   346788999999999999875  6789999999999999999999999996


Q ss_pred             CC-----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccC
Q psy3170          82 AH-----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGS  144 (525)
Q Consensus        82 ~~-----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  144 (525)
                      ..     ...+..|+|+|||..  .+  ..+..|+.+.+++++...|...+..    .+...|+|++.
T Consensus       161 ~~~~~~~~~~~~~~~v~GwG~~--~~--~~~~~L~~~~v~~~~~~~C~~~~~~----~~~~~~~Ca~~  220 (283)
T 3f1s_B          161 KDFAEHLLIPRTRGLLSGWARN--GT--DLGNSLTTRPVTLVEGEECGQVLNV----TVTTRTYCERS  220 (283)
T ss_dssp             HHHHHHTTTTTSCEEEEECBCC-----------CEEEEEEEECHHHHHHHHTS----CCCTTEEEEEC
T ss_pred             CccccccccCCCEEEEEECCCC--CC--CCCceeeEEEEeEeCHHHHhhhhcC----CCCCCeEcccC
Confidence            53     356888999999982  22  4567899999999999999876543    35677888864

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=174.76  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=121.9

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccC--CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeee
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSY--SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPA   77 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~--~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pi   77 (525)
                      .|||||||+...  ....+.|++|.+++...  +...+.+.|.+++.||++        ||||||||++|+.|+++|+||
T Consensus        33 ~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~~--------~DiALl~L~~~v~~~~~v~pi  104 (234)
T 2asu_B           33 WILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG--------SQLVLLKLERSVTLNQRVALI  104 (234)
T ss_dssp             EEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEEEECSTT--------CCEEEEEESSCCCCSSSSCCC
T ss_pred             EEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEEecCCCC--------CCeEEEEeCCcCcCCCcEecc
Confidence            489999999653  34678999999877554  445678999999999963        699999999999999999999


Q ss_pred             ecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhh
Q psy3170          78 CLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQC  155 (525)
Q Consensus        78 cL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C  155 (525)
                      |||...  ...+..|+++|||.+....   .+..++...+.+++...|...+..    .....++|++...   .....|
T Consensus       105 cLp~~~~~~~~~~~~~v~GwG~~~~~~---~~~~L~~~~~~~~~~~~C~~~~~~----~~~~~~~Ca~~~~---~~~~~C  174 (234)
T 2asu_B          105 CLPPEWYVVPPGTKCEIAGWGETKGTG---NDTVLNVALLNVISNQECNIKHRG----RVRESEMCTEGLL---APVGAC  174 (234)
T ss_dssp             BCCCTTCCCCTTCEEEEEESSCCTTSS---CTTBCEEEEEEEECHHHHHHHTTT----CCCTTEEEECCCS---SCCBCC
T ss_pred             CCCCccccCCCCCEEEEEeCCccCCCC---CCccceEEEeeEEcHHHcccccCC----ccCcceEeecCCC---CCCeec
Confidence            999654  3467889999999987543   356889999999999999776532    3456788876532   123578


Q ss_pred             chhhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         156 TQYSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       156 ~~~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      .+++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       175 ~GDS----GgPL~~~~~~~~~l~Gi~S~g-~~C~~  204 (234)
T 2asu_B          175 EGDY----GGPLACFTHNSWVLEGIIIPN-RVCAR  204 (234)
T ss_dssp             TTCT----TCEEEEEETTEEEEEEEECCC-SSSSC
T ss_pred             cCCC----CCceEEEECCeEEEEEEEEcC-CCCCC
Confidence            8776    67776544    355655554 35754

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=99.82  E-value=5.4e-21  Score=180.74  Aligned_cols=171  Identities=20%  Similarity=0.220  Sum_probs=121.3

Q ss_pred             ceeeeccCcccC-----CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC-CCCCcCceEEEEeCCCccCCCcee
Q psy3170           2 VNNHAAHCITSP-----LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE-GTSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      .|||||||+...     ....+.|++|.+++.... ..+.+.|+++++||+|+.. ...+.||||||||++|+.|+++|+
T Consensus        33 ~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~  111 (242)
T 2qy0_B           33 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLL  111 (242)
T ss_dssp             EEEECHHHHSCSSCCC----CCEEEESCSBHHHHH-HHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBC
T ss_pred             EEEEcHHhccccccccCCCceEEEEEeeccccccc-cccceeEEEEEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcc
Confidence            489999998642     235688999987764221 2346789999999999853 125678999999999999999999


Q ss_pred             eeecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-ccccccceeeccCCcccCCch
Q psy3170          76 PACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-CDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        76 picL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      |||||....  ..+..|+++|||.+...    .+..++.+.+.+++...|...+.... -......|+|++...   ...
T Consensus       112 picLp~~~~~~~~~~~~~v~GwG~~~~~----~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~---~~~  184 (242)
T 2qy0_B          112 PICLPDNDTFYDLGLMGYVSGFGVMEEK----IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS---LKQ  184 (242)
T ss_dssp             CCBCCCSGGGGCTTCEEEEEECCCCSSS----CCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTT---CCC
T ss_pred             eeecCCCccccCCCCeEEEEeeccCCCc----CCccceEEEEEEeCHHHHHHHhccccccccCCCCEEeccCCC---CCC
Confidence            999996543  45778999999988643    45678899999999999976543211 113456788887531   124


Q ss_pred             hhhchhhhhcccCCcccc-c-----ccccceeEeecccc
Q psy3170         153 HQCTQYSKIQDESPIALA-P-----ALVGGVRYVRTQCD  185 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~-~-----~~~g~v~~~~~~Cg  185 (525)
                      ..|++++    ++|+.+. .     .+.|.+++. ..|+
T Consensus       185 ~~C~GDS----GgPl~~~~~~~~~~~l~Gi~S~g-~~C~  218 (242)
T 2qy0_B          185 DACQGDS----GGVFAVRDPNTDRWVATGIVSWG-IGCS  218 (242)
T ss_dssp             BCCTTCT----TCEEEEECTTTCCEEEEEEEEEC-SSSS
T ss_pred             ccccCCC----CCcEEEEECCCCeEEEEEEEEEC-CCcC
Confidence            5788776    6777653 1     256766665 3574

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=99.82  E-value=6.9e-21  Score=187.75  Aligned_cols=171  Identities=20%  Similarity=0.220  Sum_probs=122.9

Q ss_pred             ceeeeccCcccC-----CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC-CCCCcCceEEEEeCCCccCCCcee
Q psy3170           2 VNNHAAHCITSP-----LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE-GTSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      .|||||||+...     ....+.|++|.+++.... ..+.+.|+++++||+|+.. ..++.||||||||++|+.|+++|+
T Consensus       122 ~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~~~~-~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~  200 (329)
T 1md8_A          122 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLL  200 (329)
T ss_dssp             EEEECGGGTSCTTC-----CCCCEEESCSBHHHHH-HHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBC
T ss_pred             EEEecCCEEEeCCcccCCCceEEEEeccccccccc-cccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceE
Confidence            489999999642     235678999987753221 2346789999999999853 125679999999999999999999


Q ss_pred             eeecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-ccccccceeeccCCcccCCch
Q psy3170          76 PACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-CDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        76 picL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      |||||....  ..+..|+|+|||.+...    .+..|+.+.+++++...|...+.... -..+...|+|++...   ...
T Consensus       201 PicLp~~~~~~~~g~~~~v~GWG~t~~~----~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~---~~~  273 (329)
T 1md8_A          201 PICLPDNDTFYDLGLMGYVSGFGVMEEK----IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS---LKQ  273 (329)
T ss_dssp             CCBCCCSGGGGCTTCEEEEEECCBCSSS----BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTT---CSC
T ss_pred             ccccCCCccccCCCCEEEEEeCCCCCCC----CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCC---CCC
Confidence            999996543  45778999999988642    46688999999999999977543211 123566789987531   134


Q ss_pred             hhhchhhhhcccCCcccc-c-----ccccceeEeecccc
Q psy3170         153 HQCTQYSKIQDESPIALA-P-----ALVGGVRYVRTQCD  185 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~-~-----~~~g~v~~~~~~Cg  185 (525)
                      ..|++++    ++|+.+. .     .+.|.+++. ..|+
T Consensus       274 d~C~GDS----GGPL~~~~~~~~~~~l~GIvS~G-~~C~  307 (329)
T 1md8_A          274 DACQGDS----GGVFAVRDPNTDRWVATGIVSWG-IGCS  307 (329)
T ss_dssp             BCCTTTT----TCEEEEEETTTTEEEEEEEEEEC-SSSS
T ss_pred             cCCCCcc----ccceEEEECCCCcEEEEEEEEEC-CCcC
Confidence            6788877    6777653 1     256777775 3574

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=99.82  E-value=6.3e-21  Score=188.81  Aligned_cols=167  Identities=17%  Similarity=0.160  Sum_probs=120.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.........+..+...+.......+.+.|+++++||+|+      .||||||||++|+.|+++|+|||||.
T Consensus       137 ~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~HP~y~------~nDIALlkL~~~v~~~~~v~PicLp~  210 (347)
T 4f4o_C          137 WLLTTAKNLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIFHPDNS------TVDIGLIKLKQKVPVNERVMPICLPS  210 (347)
T ss_dssp             EEEECHHHHTTTSCTTCCHHHHGGGCEEEETTTEEECEEEEEECSCTT------TCCCEEEEESSCCCCSSSCCCCBCCS
T ss_pred             EEEeCcccccCCCCCcceEEeeeeeeeecCCCeEEEEEEEEEECcCCC------CCCEEEEEECCCccCCCceeeeecCc
Confidence            489999999654333444444443333334456789999999999985      37999999999999999999999996


Q ss_pred             CC-CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-------------ccccccceeeccCCcc
Q psy3170          82 AH-NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-------------CDILAMPMIIGGSRAK  147 (525)
Q Consensus        82 ~~-~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-------------~~~~~~~~~~~~~~~~  147 (525)
                      .. ...+..|+++|||.+....   .+..|+.+.+++++...|...|....             -......|+|+|... 
T Consensus       211 ~~~~~~g~~~~v~GWG~~~~~~---~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~-  286 (347)
T 4f4o_C          211 KDYVNVGLVGYVSGWGRNANLN---FTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSK-  286 (347)
T ss_dssp             SCCCCTTCEEEEEECSBCTTSS---BCSSCEEEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCT-
T ss_pred             cccCCCCcEEEEeccccCCCCC---CCccceEEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCC-
Confidence            54 3567889999999876543   56789999999999999977553211             113456789987532 


Q ss_pred             cCCchhhhchhhhhcccCCcccccc------cccceeEeecccc
Q psy3170         148 YGEFPHQCTQYSKIQDESPIALAPA------LVGGVRYVRTQCD  185 (525)
Q Consensus       148 ~g~~~~~C~~~~~~~~~~~l~~~~~------~~g~v~~~~~~Cg  185 (525)
                        ...+.|++++    ++|+.+...      +.|.+++. ..|+
T Consensus       287 --~~~d~C~GDS----GGPLv~~~~~~~~~~lvGIvS~G-~~C~  323 (347)
T 4f4o_C          287 --YQEDTCYGDA----GSAFAVHDKDDDTWYAAGILSFD-KSCR  323 (347)
T ss_dssp             --TCCCCCTTCT----TCEEEEEETTTTEEEEEEEEEEC-CCTT
T ss_pred             --CCCCCCCCCC----CcceEEEeCCCCEEEEEEEEEeC-CCCC
Confidence              1246798887    788765332      56777775 4585

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=99.82  E-value=1.5e-20  Score=186.12  Aligned_cols=168  Identities=20%  Similarity=0.267  Sum_probs=117.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEE---EEEEECCCCCCC-----CCCCcCceEEEEeCCCccCCCc
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRV---MQNILHPNYTTE-----GTSQYHDIALLKIAPPVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v---~~i~~hp~y~~~-----~~~~~nDIALl~L~~~v~~~~~   73 (525)
                      .|||||||+...  ....|++|.+++.  ....+.+.|   +++++||+|+..     ..++.||||||||++|+.|+++
T Consensus       114 ~VLTAAHC~~~~--~~~~v~~G~~~~~--~~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~  189 (333)
T 1elv_A          114 WVLTAAHVVEGN--REPTMYVGSTSVQ--TSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPT  189 (333)
T ss_dssp             EEEECHHHHTTC--SSCCEECSCSBCC---------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTT
T ss_pred             EEEehhheeCCC--CCCeEEEeeeecc--cCccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCc
Confidence            489999999663  2347899988762  223344555   999999999841     1256899999999999999999


Q ss_pred             eeeeecCCCC----CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-----ccccccceeeccC
Q psy3170          74 LKPACLNRAH----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-----CDILAMPMIIGGS  144 (525)
Q Consensus        74 v~picL~~~~----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~~~  144 (525)
                      |+|||||...    ...+..|+|+|||.+...   ..+..|+.+.+++.+...|...+....     -..+...|+|++.
T Consensus       190 v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~~---~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~  266 (333)
T 1elv_A          190 VSPICLPGTSSDYNLMDGDLGLISGWGRTEKR---DRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG  266 (333)
T ss_dssp             BCCCBCCCSSGGGCCCTTCEEEEEESCCCSSC---SSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEEC
T ss_pred             ccceecCCCcccccccCCcEEEEEECcCcCCC---CcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccC
Confidence            9999999654    245788999999998653   246788999999999999987653210     1135667899875


Q ss_pred             CcccCCchhhhchhhhhcccCCccccc-------ccccceeEeecccc
Q psy3170         145 RAKYGEFPHQCTQYSKIQDESPIALAP-------ALVGGVRYVRTQCD  185 (525)
Q Consensus       145 ~~~~g~~~~~C~~~~~~~~~~~l~~~~-------~~~g~v~~~~~~Cg  185 (525)
                      ..    ....|++++    ++|+.+..       .+.|.+++. ..|+
T Consensus       267 ~~----~~~~C~GDS----GGPL~~~~~~~~~~~~l~GIvS~g-~~C~  305 (333)
T 1elv_A          267 EK----GMDSCKGDS----GGAFAVQDPNDKTKFYAAGLVSWG-PQCG  305 (333)
T ss_dssp             ST----TCBCCTTCT----TCEEEEECSSCTTCEEEEEEEEEC-SSTT
T ss_pred             CC----CCCcCcCcC----CCceEEEECCCCcEEEEEEEEeeC-CCCC
Confidence            32    345788876    67776531       246666665 4574

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=99.82  E-value=9.3e-20  Score=171.94  Aligned_cols=164  Identities=15%  Similarity=0.148  Sum_probs=120.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccC--CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSY--SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~--~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+.......+.|++|.+++...  ....+.+.|.+++.||+        .||||||||++|+.|+++|+||||
T Consensus        34 ~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~p~--------~~DiALl~L~~~v~~~~~v~picL  105 (240)
T 1si5_H           34 WVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPE--------GSDLVLMKLARPAVLDDFVSTIDL  105 (240)
T ss_dssp             EEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSS--------TTCEEEEEESSCCCCSSSCCCCBC
T ss_pred             EEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEcCCC--------CCcEEEEEECCccccCCceeccCc
Confidence            48999999976555679999999887654  34567899999999986        379999999999999999999999


Q ss_pred             CCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhch
Q psy3170          80 NRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        80 ~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      |...  ...+..|+++|||.+....   .+..++...+.+++...|...+...  ......++|++...+   ....|.+
T Consensus       106 p~~~~~~~~~~~~~v~GwG~~~~~~---~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~Ca~~~~~---~~~~C~G  177 (240)
T 1si5_H          106 PNYGSTIPEKTSCSVYGWGYTGLIN---YDGLLRVAHLYIMGNEKCSQHHRGK--VTLNESEICAGAEKI---GSGPCEG  177 (240)
T ss_dssp             CCTTCCCCTTCEEEEEESSCCCCSS---CCCBCEEEEEEEECGGGTCC---------CCTTEEEEECSSS---CCBCCTT
T ss_pred             CCcCCCCCCCCEEEEEEeCCCCCCC---CCCeeEEEEEeecCHHHhhhhhcCC--ccCCCCEEeecCCCC---CCEeccC
Confidence            9753  3567889999999986543   4568899999999999998765321  124567888865321   2357887


Q ss_pred             hhhhcccCCccccc----ccccceeEeeccccC
Q psy3170         158 YSKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       158 ~~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      ++    ++|+.+..    .+.|.+++. ..|+.
T Consensus       178 DS----GgPL~~~~~~~~~l~Gi~S~g-~~C~~  205 (240)
T 1si5_H          178 DY----GGPLVCEQHKMRMVLGVIVPG-RGCAI  205 (240)
T ss_dssp             CT----TCEEEEECSSSEEEEEEECSC-SCSSC
T ss_pred             CC----CCcEEEEECCcEEEEEEEEEC-CCCCC
Confidence            76    67776544    345655554 35753

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=99.82  E-value=1.8e-20  Score=200.00  Aligned_cols=170  Identities=23%  Similarity=0.316  Sum_probs=119.1

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.... ...+.|++|.+++.......+.+.|+++++||+|+..  ...||||||||++|+.++++|+|||||
T Consensus       425 ~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~V~~ii~Hp~y~~~--~~~nDIALlkL~~pv~~~~~v~PicLp  502 (625)
T 2f83_A          425 WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMA--ESGYDIALLKLETTVNYTDSQRPICLP  502 (625)
T ss_dssp             EEEECGGGGSSCCCGGGEEEEESCSBGGGCCSSCCCEEEEEEEECTTCCBT--TTBCCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEEcHHhCCCCCCCceEEEEEEeccCCCCCCCceEEeEEEEEECCccCcC--CccccEEEEEECCcccCCCceeeeEcC
Confidence            4899999997542 3568899999887655555677899999999999865  678999999999999999999999999


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ....  ..+..|+|+|||.+...+  ..+..|+.+.+++++...|...+...   .+...|+|++...   .....|+++
T Consensus       503 ~~~~~~~~~~~~~v~GWG~~~~~~--~~s~~L~~~~v~i~~~~~C~~~~~~~---~i~~~~iCag~~~---~~~d~C~GD  574 (625)
T 2f83_A          503 SKGDRNVIYTDCWVTGWGYRKLRD--KIQNTLQKAKIPLVTNEECQKRYRGH---KITHKMICAGYRE---GGKDACKGD  574 (625)
T ss_dssp             CGGGTTCCCCCEEECBCC--------CCCSBCBCCEECCCCHHHHHTTCTTS---CCCTTBCCC-------------CCC
T ss_pred             CccCCccCCCEEEEEEecCCCCCC--cCCcccEEEEEEEcCHHHHHHHhccC---CCCCCeEEeecCC---CCCcCCCCC
Confidence            6543  457789999999886544  34678899999999999998766431   3456788876432   124678887


Q ss_pred             hhhcccCCccccc----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+..    .+.|.+++.. .|+.
T Consensus       575 S----GGPLv~~~~~~~~lvGIvS~G~-~C~~  601 (625)
T 2f83_A          575 S----GGPLSCKHNEVWHLVGITSWGE-GCAQ  601 (625)
T ss_dssp             T----TCEEEEEETTEEEEEEEEEECC-C---
T ss_pred             c----ccceEEEECCeEEEEEEEEeCC-CCCC
Confidence            7    77776532    2567777753 5753

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=99.81  E-value=3.3e-20  Score=173.86  Aligned_cols=159  Identities=23%  Similarity=0.323  Sum_probs=120.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+  ...+.|++|.+++..   ..+.+.|+++++||+|+..  ...||||||||+ |+.++++|+|||||.
T Consensus        39 ~VLTAAHC~~~--~~~~~v~~G~~~~~~---~~~~~~v~~i~~hp~y~~~--~~~~DiALl~L~-~~~~~~~v~picLp~  110 (230)
T 2hlc_A           39 WILTAAHCVHD--AVSVVVYLGSAVQYE---GEAVVNSERIISHSMFNPD--TYLNDVALIKIP-HVEYTDNIQPIRLPS  110 (230)
T ss_dssp             EEEECHHHHTT--EEEEEEEESCSBTTC---CSEEEECSEEEECTTCBTT--TTBTCCEEEECS-CCCCCSSCCCCBCCC
T ss_pred             EEEECHHHCCC--CcceEEEEeeeecCC---CCeEEEEEEEEECCCCCCC--CccccEEEEEec-CCCcCCcEeeeEcCC
Confidence            48999999965  356889999886643   2378899999999999875  678999999999 999999999999996


Q ss_pred             CC----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhch
Q psy3170          82 AH----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQ  157 (525)
Q Consensus        82 ~~----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~  157 (525)
                      ..    ...+..|+++|||.+....     ..++...+.+++...|...+...   .....++|++...    ....|++
T Consensus       111 ~~~~~~~~~~~~~~v~GwG~~~~~~-----~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~Ca~~~~----~~~~C~G  178 (230)
T 2hlc_A          111 GEELNNKFENIWATVSGWGQSNTDT-----VILQYTYNLVIDNDRCAQEYPPG---IIVESTICGDTSD----GKSPCFG  178 (230)
T ss_dssp             GGGGGCCCTTCEEEEEESSCCSSCC-----CBCEEEEEEEECHHHHHTTSCTT---SSCTTEEEECCTT----SCBCCTT
T ss_pred             ccccccccCCcEEEEEeeeecCCCC-----ceeEEEEEEEeCHHHhhhhhCCC---cccCCeEEecCCC----CCCcCCC
Confidence            54    3467789999999876432     56888889999999998765431   3456788876521    2356887


Q ss_pred             hhhhcccCCccccc--ccccceeEee-ccc
Q psy3170         158 YSKIQDESPIALAP--ALVGGVRYVR-TQC  184 (525)
Q Consensus       158 ~~~~~~~~~l~~~~--~~~g~v~~~~-~~C  184 (525)
                      ++    ++|+.+..  .+.|.+++.. ..|
T Consensus       179 DS----GgPl~~~~~~~l~Gi~S~g~~~~C  204 (230)
T 2hlc_A          179 DS----GGPFVLSDKNLLIGVVSFVSGAGC  204 (230)
T ss_dssp             CT----TCEEEEGGGTEEEEEEEECCTTCT
T ss_pred             CC----CCeeEECcCCEEEEEEEEeCCCCC
Confidence            76    67776654  4567777754 356

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=173.86  Aligned_cols=176  Identities=21%  Similarity=0.225  Sum_probs=128.9

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCc----cCCCceee
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV----EFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v----~~~~~v~p   76 (525)
                      .|||||||+.+.. ...+.|++|..++...+...+.+.|+++++||+|+......+||||||+|+.++    .++++|+|
T Consensus        63 ~VLTAAHCv~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~p  142 (276)
T 2vnt_A           63 WVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT  142 (276)
T ss_dssp             EEEECGGGTTTCCCGGGEEEEESCCBSSSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCC
T ss_pred             EEEECcccccCCCCCccEEEEeeeeeccCCCCceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccc
Confidence            4899999997643 356789999998887777888999999999999987644567999999998765    58899999


Q ss_pred             eecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhh
Q psy3170          77 ACLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        77 icL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      ||||...  ...+..|+++|||.+..... ..+..++.+.+.+.+...|...+...  ......++|++...   .....
T Consensus       143 icL~~~~~~~~~~~~~~~~g~G~~~~~~~-~~~~~l~~~~~~i~~~~~C~~~~~~~--~~~~~~~~~~~~~~---~~~~~  216 (276)
T 2vnt_A          143 ICLPSMYNDPQFGTSCEITGFGKENSTDY-LYPEQLKMTVVKLISHRECQQPHYYG--SEVTTKMLCAADPQ---WKTDS  216 (276)
T ss_dssp             CBCCCSSCCCCTTCEEEEEESCCSSTTCS-CCCSBCEEEEEEEECHHHHTSTTTTG--GGSCTTEEEEECTT---SCCCC
T ss_pred             cccccccccccccceEEEEEeeccccCCC-CcchhheeeeeeEecHHHhhhhhccC--cccCccceeeccCC---CCCCC
Confidence            9998654  35578899999998765543 45677888889999999998765432  12334455554321   12356


Q ss_pred             hchhhhhcccCCcccccc----cccceeEeeccccCCC
Q psy3170         155 CTQYSKIQDESPIALAPA----LVGGVRYVRTQCDILA  188 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~~----~~g~v~~~~~~Cg~~~  188 (525)
                      |.+++    ++|+.+...    +.|.+++. ..|+...
T Consensus       217 C~GDS----GGPLv~~~~~~~~lvGIvS~G-~~C~~~~  249 (276)
T 2vnt_A          217 CQGDS----GGPLVCSLQGRMTLTGIVSWG-RGCALKD  249 (276)
T ss_dssp             CTTCT----TCEEEEEETTEEEEEEEEEEC-SSSSBTT
T ss_pred             CCCCC----CCeEEEeeCCeEEEEEEEEEC-CCCCCCC
Confidence            88776    677766443    67777775 4576433

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=99.80  E-value=2.3e-19  Score=170.00  Aligned_cols=164  Identities=19%  Similarity=0.240  Sum_probs=120.2

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+... ....+.|++|.++........+.+.|.+++.||.+        ||||||||++|+.|+++|+|||||
T Consensus        53 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~~--------~DIALl~L~~~v~~~~~v~picLp  124 (247)
T 1ddj_A           53 WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR--------KDIALLKLSSPAVITDKVIPACLP  124 (247)
T ss_dssp             EEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEEEECTTS--------CSCEEEEESSCCCCCSSCCCCBCC
T ss_pred             EEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeEEcCCCC--------CcEEEEEeCCceeeCCCEEeeecC
Confidence            489999999753 23568999999877655556678899999999963        699999999999999999999999


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ....  ..+..|+++|||.+....   .+..++.+.+++++...|......  .......++|++...   .....|+++
T Consensus       125 ~~~~~~~~~~~~~v~GwG~~~~~~---~~~~L~~~~~~i~~~~~C~~~~~~--~~~~~~~~~Ca~~~~---~~~~~C~GD  196 (247)
T 1ddj_A          125 SPNYVVADRTECFITGWGETQGTF---GAGLLKEAQLPVIENKVCNRYEFL--NGRVQSTELCAGHLA---GGTDSCQGD  196 (247)
T ss_dssp             CTTCCCCTTCEEEEEECCCCSSST---TTTBCEEEEEEEECHHHHTSTTTT--TTCCCTTEEEESCSS---SCCCBCCSC
T ss_pred             CcccCCCCCCEEEEEEcccCCCCC---CCccceEEeeeecCHHHhcchhcc--CCCCcCCeEeecCCC---CCCccccCc
Confidence            6543  457789999999886432   356789999999999999764211  123456788887532   123568877


Q ss_pred             hhhcccCCccccc----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+..    .+.|.+++. ..|+.
T Consensus       197 S----GgPL~~~~~~~~~l~GI~S~g-~~C~~  223 (247)
T 1ddj_A          197 A----GGPLVCFEKDKYILQGVTSWG-LGCAR  223 (247)
T ss_dssp             T----TCEEEEECSSSEEEEEEECGG-GCCBB
T ss_pred             C----cCcEEEEECCcEEEEEEEEEC-CCCCC
Confidence            6    67776533    245656654 45753

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.80  E-value=5.4e-20  Score=180.96  Aligned_cols=128  Identities=14%  Similarity=0.173  Sum_probs=104.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.|++|.+++   ....+.+.|+++++||+|+..  ++.||||||||++|+.|+++|+|||||.
T Consensus       129 ~VLTAAHC~~~--~~~~~V~~G~~~~---~~~~~~~~v~~i~~Hp~y~~~--~~~~DIALl~L~~pv~~~~~v~picLp~  201 (317)
T 3h5c_B          129 FVLTTAKCSLL--HRNITVKTYFNRT---SQDPLMIKITHVHVHMRYDAD--AGENDLSLLELEWPIQCPGAGLPVCTPE  201 (317)
T ss_dssp             EEEECHHHHHS--CSSCEEEECTTSC---TTSCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCTTTSCCCCBCCC
T ss_pred             EEEEChHhcCc--CCceEEEEeeecC---CCCcEEEEeeEEEECCCCCCC--CCCCCeEEEEeCCcccCCCCccceeCCC
Confidence            48999999965  3578999997755   345678999999999999875  6789999999999999999999999997


Q ss_pred             CC-----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccC
Q psy3170          82 AH-----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGS  144 (525)
Q Consensus        82 ~~-----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  144 (525)
                      ..     ...+..++|+|||..  ..  ..+..|+.+.+.+++...|...+..    .....|+|++.
T Consensus       202 ~~~~~~~~~~~~~~~v~GwG~~--~~--~~~~~L~~~~v~~~~~~~C~~~~~~----~~~~~~~Ca~~  261 (317)
T 3h5c_B          202 KDFAEHLLIPRTRGLLSGWARN--GT--DLGNSLTTRPVTLVEGEECGQVLNV----TVTTRTYCERS  261 (317)
T ss_dssp             HHHHHHTTTTTSCEEEEBCCTT--CC--SSSCCCBCCEEEEECHHHHHHHHTC----CCCTTEEEEEC
T ss_pred             cccccccccCCCeEEEEecCCC--CC--CCCccceEEEEEEECHHHHhhhhcC----cCCCceeECCC
Confidence            53     356888999999982  22  4567899999999999999876533    35667888764

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=99.80  E-value=2.7e-19  Score=166.94  Aligned_cols=164  Identities=18%  Similarity=0.203  Sum_probs=119.7

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+... ....+.|++|.+++..  ...+.+.|.++++||+|+..  +..||||||||++|+.+    +++||+
T Consensus        31 ~VLTAAHC~~~~~~~~~~~v~~G~~~~~~--~~~~~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~v~~----~~i~l~  102 (224)
T 3beu_A           31 IVLTAAHCVSGSGNNTSITATGGVVDLQS--SSAVKVRSTKVLQAPGFTKE--TYGKDWALIKLAQPINQ----PTLKIA  102 (224)
T ss_dssp             EEEECGGGSCSSEEBCCCEEEESCSBTTC--TTCEEEEEEEEEECTTCCCG--GGSCCCEEEEESSCCCS----CCCEEC
T ss_pred             EEEEChhhcCCCCCcceEEEEeeEeecCC--CCceEEEEEEEEeCCCcCCC--cCCCCEEEEEeCCCCCC----Cccccc
Confidence            489999999763 2356889999887643  23467899999999999865  66899999999999964    588998


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..|+++|||.+..++  ..+..++...+.+.+...|...+..   ......++|++...   .....|.+++ 
T Consensus       103 ~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~Ca~~~~---~~~~~C~GDs-  173 (224)
T 3beu_A          103 TTTAYNQGTFTVAGWGANREGG--SQQRYLLKANVPFVSDAACRSSSSF---ILVANEMICAGYDT---KQEDTCQGDS-  173 (224)
T ss_dssp             CSSTTSSSEEEEEESSCSSTTC--CCCSBCEEEEEEEECHHHHHHHCSS---CCCGGGEEEECCSS---SSCBCCTTCT-
T ss_pred             cccccCCCEEEEEecCccCCCC--cccceeeEeeCcccCHHHhhhhcCC---ccCCCCeEEeccCC---CCCcCCCCcC-
Confidence            6655556689999999987654  3567788999999999999776542   12456788887532   1235688776 


Q ss_pred             hcccCCccccc-----ccccceeEeeccccC
Q psy3170         161 IQDESPIALAP-----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       161 ~~~~~~l~~~~-----~~~g~v~~~~~~Cg~  186 (525)
                         ++|+.+..     .+.|.+++. ..|+.
T Consensus       174 ---GgPl~~~~~~~~~~l~Gi~S~g-~~C~~  200 (224)
T 3beu_A          174 ---GGPMFRKDNADEWVQVGIVSWG-EGCAR  200 (224)
T ss_dssp             ---TCEEEEECTTSCEEEEEEEEEE-SSSSC
T ss_pred             ---CCeeEEecCCCCEEEEEEeccC-CCCCC
Confidence               67776533     346766665 35753

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.80  E-value=5.1e-20  Score=187.21  Aligned_cols=171  Identities=19%  Similarity=0.210  Sum_probs=116.9

Q ss_pred             ceeeeccCcccCC-----CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC-CCCcCceEEEEeCCCccCCCcee
Q psy3170           2 VNNHAAHCITSPL-----GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-TSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~~-----~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      .|||||||+....     ...+.|++|.+++.... ..+.+.|+++++||+|+... .++.||||||||++|+.|+++|+
T Consensus       190 ~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~  268 (399)
T 1gpz_A          190 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLL  268 (399)
T ss_dssp             EEEECGGGTSCTTC-----CCCEEEESCSBHHHHH-HTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBC
T ss_pred             EEEeChhcccccccccCCcceEEEEeccccccccc-cccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCcee
Confidence            4899999996532     24578999988764322 23457899999999997531 24679999999999999999999


Q ss_pred             eeecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-ccccccceeeccCCcccCCch
Q psy3170          76 PACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-CDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        76 picL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      |||||....  ..+..|+|+|||.+..    ..+..|+.+.+++++...|...+.... -..+...|+|++...   ...
T Consensus       269 picLp~~~~~~~~~~~~~v~GwG~~~~----~~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~---~~~  341 (399)
T 1gpz_A          269 PICLPDNDTFYDLGLMGYVSGFGVMEE----KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS---LKQ  341 (399)
T ss_dssp             CCBCCCSGGGGCTTCEEEEEECC---------CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGG---GGG
T ss_pred             eeecCCCccccCCCCEEEEEccCCCCC----ccCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCC---CCC
Confidence            999997543  4577899999998863    245678999999999999977553211 123566799987532   135


Q ss_pred             hhhchhhhhcccCCccccc------ccccceeEeecccc
Q psy3170         153 HQCTQYSKIQDESPIALAP------ALVGGVRYVRTQCD  185 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg  185 (525)
                      +.|++++    ++|+.+..      .+.|.+++. ..|+
T Consensus       342 d~C~GDS----GGPl~~~~~~~~~~~l~GivS~g-~~C~  375 (399)
T 1gpz_A          342 DACQGDS----GGVFAVRDPNTDRWVATGIVSWG-IGCS  375 (399)
T ss_dssp             GGGCSCS----SCEEEEEETTTTEEEEEEEECCC-TTTT
T ss_pred             ccCCCCC----chHeEEEECCCCeEEEEEEEEeC-CCcC
Confidence            7898887    67776532      245666665 3474

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.79  E-value=2e-19  Score=189.69  Aligned_cols=167  Identities=20%  Similarity=0.210  Sum_probs=96.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCC----ceee
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSE----TLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~----~v~p   76 (525)
                      .|||||||+.......+.|++|.+++.... ...+.+.|++|++||+|+..  ++.||||||||++|+.+++    +++|
T Consensus       356 ~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~~~~~~~V~~ii~Hp~Y~~~--~~~nDIALlkL~~~v~~~~~~~~~v~P  433 (565)
T 2xrc_A          356 WILTAAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAG--TYQNDIALIEMKKDGNKKDCELPRSIP  433 (565)
T ss_dssp             EEEECHHHHTTCSSCCEEEEC-------------CEEEEEEEEECTTCCTT--TCTTCCEEEEECCCSSSSCSCCTTCCC
T ss_pred             EEEEChhhcccCCCcceEEEEEEeeccCCCCCccEEEEEEEEEeCCCCCCC--cccccceeeeeccccccccccccceee
Confidence            489999999775557789999988775444 45678899999999999875  6789999999999999764    7899


Q ss_pred             eecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhh
Q psy3170          77 ACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQ  154 (525)
Q Consensus        77 icL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  154 (525)
                      ||||....  ..+..|+|+|||.+..+.   .+..++.+.+.++++  |...+...   .....|+|++...+   ....
T Consensus       434 icLp~~~~~~~~g~~~~v~GWG~t~~~~---~~~~L~~~~v~i~~~--C~~~~~~~---~~~~~~iCAg~~~g---~~d~  502 (565)
T 2xrc_A          434 ACVPWSPYLFQPNDTCIVSGWGREKDNE---RVFSLQWGEVKLISN--CSKFYGNR---FYEKEMECAGTYDG---SIDA  502 (565)
T ss_dssp             CBCCSCTTSSCTTCEEEEEC----------------CEEEEEECSC--THHHHTTS---CCTTTEEEEEEC---------
T ss_pred             eecCCcccccCCCCEEEEEeCccCCCCC---ccceeeEEeeeehHH--hHHhhccC---cCCCceEEeCCCCC---CCcc
Confidence            99996543  457889999999986533   456788888888874  66544321   12334888875321   2467


Q ss_pred             hchhhhhcccCCccccc-----ccccceeEeeccccC
Q psy3170         155 CTQYSKIQDESPIALAP-----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       155 C~~~~~~~~~~~l~~~~-----~~~g~v~~~~~~Cg~  186 (525)
                      |++++    ++||.+..     .+.|.+++. ..|+.
T Consensus       503 C~GDS----GGPLv~~~~~~~~~lvGIvS~G-~~C~~  534 (565)
T 2xrc_A          503 CKGDS----GGPLVCMDANNVTYVWGVVSWG-ENCGK  534 (565)
T ss_dssp             ----C----CCEEEEECTTCCEEEEEEECC-------
T ss_pred             CCCcc----ccceEEEeCCCcEEEEEEEeeC-CCCCC
Confidence            88887    77776532     145666665 45754

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.77  E-value=7e-19  Score=135.30  Aligned_cols=56  Identities=30%  Similarity=0.576  Sum_probs=43.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTT  339 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~  339 (525)
                      .++|+|+||+++||||||||+..    ...|++|.. +...... .....|+++++||+|+.
T Consensus        23 ~~~CgGslIs~~~VLTAAHC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           23 SFQCGGVLVNPKWVLTAAHCKND----NYEVWLGRH-NLFENENTAQFFGVTADFPHPGFNL   79 (80)
T ss_dssp             EEEEEEEEEETTEEEECGGGCCS----CCEEEESCS-BTTSCCTTCEEEEEEEEEECTTTTT
T ss_pred             ceEEEEEEEcCCEEEECHHHCCC----CcEEEEeee-EcCCCCCCcEEEEEEEEEECcCCCC
Confidence            58899999999999999999854    467999987 4333322 33444999999999975

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.74  E-value=4.7e-19  Score=159.29  Aligned_cols=156  Identities=18%  Similarity=0.174  Sum_probs=105.8

Q ss_pred             eEeE-EEEEe---CCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         280 WFCG-GSLIS---PNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       280 ~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      ..|+ |.+|+   ++||||||||+...    ..+++|...                  .+.|      ..+|||||||++
T Consensus        12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~----~~~~~G~~~------------------~~~~------~~~DiAlikl~~   63 (181)
T 2sga_A           12 SRCSLGFNVSVNGVAHALTAGHCTNIS----ASWSIGTRT------------------GTSF------PNNDYGIIRHSN   63 (181)
T ss_dssp             EEEECCEEEEETTEEEEEECHHHHTTC----SEETTEEEE------------------EEEC------SBSCEEEEEESC
T ss_pred             CcEeccEEEEECCceEEEECcccCCCC----Cceeeccee------------------CCcC------CCCCEEEEEccC
Confidence            5799 99998   68999999998542    234555441                  0112      237999999999


Q ss_pred             CcccCCCccce----ecCC--CCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCC
Q psy3170         356 PVEFSETLKPA----CLNR--AHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMA  429 (525)
Q Consensus       356 ~~~~~~~v~pi----cL~~--~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~  429 (525)
                      ++.+++.++++    +++.  .....+..+...||+...     ....++...+.+ +...+.. +    ..+++.    
T Consensus        64 ~~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~~~-----t~G~v~~~~~~v-~~~~~~~-~----~~~i~~----  128 (181)
T 2sga_A           64 PAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGL-----RSGSVTGLNATV-NYGSSGI-V----YGMIQT----  128 (181)
T ss_dssp             GGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTEE-----EEEEEEEEEEEE-ECGGGCE-E----EEEEEE----
T ss_pred             CCcccceEEecCCcceeecccccCCCCCEEEEeecCCCc-----cEEEEEEeEEEE-ECCCCCE-E----eeeEec----
Confidence            99888889888    7764  344667888888876321     223455555554 2223321 1    122322    


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcc
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVH  486 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~  486 (525)
                       ..-.|+|||||||++.     . +++||+||+.. |. ...|++|++|+.|++|+.=
T Consensus       129 -~~c~~~GDSGGPlv~~-----~-~~vGI~s~g~~~~~-~~~~~v~~~v~~~~~~l~v  178 (181)
T 2sga_A          129 -NVCAQPGDSGGSLFAG-----S-TALGLTSGGSGNCR-TGGTTFYQPVTEALSAYGA  178 (181)
T ss_dssp             -SCCCCTTCTTCEEEET-----T-EEEEEEEEEEEETT-TEEEEEEEEHHHHHHHHTE
T ss_pred             -ccccCCCCCCCEEEEC-----C-EEEEEEEeeCCCCc-CCCceEEEEHHHHHHhcCc
Confidence             1234689999999862     2 79999999964 54 4579999999999999864

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=99.72  E-value=1.5e-17  Score=179.95  Aligned_cols=164  Identities=20%  Similarity=0.246  Sum_probs=122.3

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+... ....+.|++|.+++.......+.+.|.++++||.+        ||||||||++|+.|+++|+|||||
T Consensus       597 wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~hp~~--------nDIALLkL~~pv~~s~~V~PIcLP  668 (791)
T 4dur_A          597 WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR--------KDIALLKLSSPAVITDKVIPACLP  668 (791)
T ss_dssp             EEEECGGGGSSCCCGGGCEEEESCCBSSSCCTTCEEEEEEEEEECTTC--------CSCEEEEESSCCCCCSSCCCCBCC
T ss_pred             EEEECHHHcCCcCCCceEEEEeccccccCCCCccEEEEEEEEECCCCC--------CceEEEEecCccccCCceeeeecc
Confidence            489999999653 23678999999987766677788999999999963        699999999999999999999999


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ....  ..+..|+|+|||.+...   ..+..|+.+.+.+++...|......  -..+...|+|++...   .....|+++
T Consensus       669 ~~~~~~~~g~~~~vsGWG~t~~~---~~s~~L~~~~v~ii~~~~C~~~~~~--~~~i~~~~iCAg~~~---gg~daC~GD  740 (791)
T 4dur_A          669 SPNYVVADRTECFITGWGETQGT---FGAGLLKEAQLPVIENKVCNRYEFL--NGRVQSTELCAGHLA---GGTDSCQGD  740 (791)
T ss_dssp             CTTCCCCTTCEEEEEECCCC------CCTTBCEEEEEEEECHHHHTSTTTT--TTCCCTTEEEESCSS---SCCCBCCSC
T ss_pred             CcccccCCCCEEEEEEeCCCCCC---CCCCeeEEEEEEEeCHHHhhccccc--CCCCCCCeEEeccCC---CCCCCCCCC
Confidence            6543  45778999999998643   3467899999999999999764221  124567788887532   124578877


Q ss_pred             hhhcccCCcccccc----cccceeEeeccccC
Q psy3170         159 SKIQDESPIALAPA----LVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~~----~~g~v~~~~~~Cg~  186 (525)
                      +    ++||++...    ++|.+++. ..|+.
T Consensus       741 S----GGPLv~~~~~~~~LvGIvS~G-~gC~~  767 (791)
T 4dur_A          741 S----GGPLVCFEKDKYILQGVTSWG-LGCAR  767 (791)
T ss_dssp             T----TCEEEEEETTEEEEEEECCTT-TCCBB
T ss_pred             c----ccceEEEeCCeEEEEEEEEeC-CCCCC
Confidence            6    677765432    45655554 35653

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.69  E-value=1.6e-17  Score=173.93  Aligned_cols=171  Identities=19%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC-------CCCcCceEEEEeCCCccCCCc
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIALLKIAPPVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~nDIALl~L~~~v~~~~~   73 (525)
                      .|||||||+... ....+.|++|.+        .+.+.|+++++||+|+...       .++.||||||||++|+.|+++
T Consensus       253 ~VLTAAHC~~~~~~~~~~~v~~G~~--------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~  324 (497)
T 1rrk_A          253 FVLTAAHCFTVDDKEHSIKVSVGGE--------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT  324 (497)
T ss_dssp             EEEECGGGCCTTCCGGGEEEEETTC--------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTT
T ss_pred             EEEECHHhCCCCCCceEEEEEeCCc--------cceeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCcCCCC
Confidence            489999999653 235688999953        3578999999999998631       146799999999999999999


Q ss_pred             eeeeecCCCC-------CCCCCCEEEEeccccccCCc-----ccccccceeeeeeecC---cccccccccc--c------
Q psy3170          74 LKPACLNRAH-------NVKSPTAIASGFGKLNYFEC-----TQYSKIQDESPIALAP---ALVGGVRYVK--T------  130 (525)
Q Consensus        74 v~picL~~~~-------~~~~~~~~v~GWG~~~~~~~-----~~~~~~~~~~~~~~~~---~~~c~~~~~~--~------  130 (525)
                      |+|||||...       ...+..|++.|||.+.....     ...+..++.+.+++.+   ...|...+..  .      
T Consensus       325 v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~  404 (497)
T 1rrk_A          325 IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD  404 (497)
T ss_dssp             BCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSC
T ss_pred             eeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhccccccccc
Confidence            9999999642       35678899999997643210     1234577888888877   4677653210  0      


Q ss_pred             cccccccceeeccCCcccCCchhhhchhhhhcccCCcccccc----cccceeEeec-ccc
Q psy3170         131 QCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPA----LVGGVRYVRT-QCD  185 (525)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~l~~~~~----~~g~v~~~~~-~Cg  185 (525)
                      .-......|+|++...+. .....|++++    ++|+.+...    +.|.++|... .|+
T Consensus       405 ~~~~~~~~~iCag~~~~~-~~~~~C~GDS----GGPL~~~~~~~~~l~GIvS~g~~~~C~  459 (497)
T 1rrk_A          405 ISEVVTPRFLCTGGVSPY-ADPNTCRGDS----GGPLIVHKRSRFIQVGVISWGVVDVCK  459 (497)
T ss_dssp             GGGTSCTTEEEEESSSSS-CCCCCCGGGT----TCEEEEEETTEEEEEEEEEEESCCCC-
T ss_pred             ccccCCCCeEEeCCCCCC-CCCcCCCCCC----CCeeEEEeCCEEEEEEEEEecCCCCCC
Confidence            012356789998754221 1246899887    788876542    6788888753 685

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.69  E-value=4e-18  Score=157.89  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=90.5

Q ss_pred             ceeeeccCcccCCCCCe----EEEEceeecccCCcCcceEEEEEEEECCCCC-CCCCCCcCceEEEEeCCCccCCCceee
Q psy3170           2 VNNHAAHCITSPLGKPR----YVRFGLITKLSYSVTDNIHRVMQNILHPNYT-TEGTSQYHDIALLKIAPPVEFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~----~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~-~~~~~~~nDIALl~L~~~v~~~~~v~p   76 (525)
                      .|||||||+.+.....+    .|++|.+++...   .+.+.|+++++||+|+ ..  ...||||||||++|  |+++++|
T Consensus        41 ~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~---~~~~~v~~i~~hp~y~~~~--~~~~DiAll~L~~~--~~~~v~p  113 (215)
T 1p3c_A           41 KILTNGHCVYNTASRSYSAKGSVYPGMNDSTAV---NGSANMTEFYVPSGYINTG--ASQYDFAVIKTDTN--IGNTVGY  113 (215)
T ss_dssp             EEEECHHHHEETTTTEECCCCEEEETCBTTBCT---TCCEEEEEEECCHHHHHHC--CGGGCCEEEEESSC--HHHHHCC
T ss_pred             EEEECccEeccCCCCccccceEEEEcccCCCCC---CCeEEEEEEEeCCccccCC--CcccCEEEEEECCC--Cccccee
Confidence            48999999976543444    899998876432   3478999999999994 22  56899999999996  6789999


Q ss_pred             eecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccc
Q psy3170          77 ACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRY  127 (525)
Q Consensus        77 icL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  127 (525)
                      +|||......+..|+++|||.+...   ..+..++...+.+.+...|...+
T Consensus       114 i~l~~~~~~~g~~~~~~Gwg~~~~~---~~~~~l~~~~~~~~~~~~c~~~~  161 (215)
T 1p3c_A          114 RSIRQVTNLTGTTIKISGYPGDKMR---STGKVSQWEMSGSVTREDTNLAY  161 (215)
T ss_dssp             CCBCCCSCCTTCEEEEEECCHHHHH---HHSSCCCEEEEEECCEECSSEEE
T ss_pred             eecCCCcccCCCeEEEecCCCCCcc---cccceechhccCccCcccchhee
Confidence            9999876677889999999986542   23456778888888888786643

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.68  E-value=1.1e-17  Score=175.72  Aligned_cols=172  Identities=19%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC-------CCCcCceEEEEeCCCccCCCc
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIALLKIAPPVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~nDIALl~L~~~v~~~~~   73 (525)
                      .|||||||+... ....+.|++|.++.    ...+.+.|+++++||+|+...       ..+.||||||||++|+.|+++
T Consensus       258 ~VLTAAHC~~~~~~~~~~~V~~G~~~~----~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~  333 (509)
T 2odp_A          258 WVLTAAHCFRDGNDHSLWRVNVGDPKS----QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTH  333 (509)
T ss_dssp             EEEECGGGC--------CEEEECCTTC----TTCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTT
T ss_pred             EEEEcHHHcCCCCCcceEEEEeCCccc----CCCceeeeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCC
Confidence            489999999653 23568999998754    235788999999999998631       146799999999999999999


Q ss_pred             eeeeecCCCC-------CCCCCCEEEEeccccccCCcccc--cccceeeeeeec---Cccccccccccc---------cc
Q psy3170          74 LKPACLNRAH-------NVKSPTAIASGFGKLNYFECTQY--SKIQDESPIALA---PALVGGVRYVKT---------QC  132 (525)
Q Consensus        74 v~picL~~~~-------~~~~~~~~v~GWG~~~~~~~~~~--~~~~~~~~~~~~---~~~~c~~~~~~~---------~~  132 (525)
                      |+|||||...       ...+..|++.|||.+........  ....+.+.+.+.   +...|...+...         .-
T Consensus       334 v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~  413 (509)
T 2odp_A          334 ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVR  413 (509)
T ss_dssp             BCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGG
T ss_pred             cccccCCCCcccchhhccCCCCccccccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhccccccccccccc
Confidence            9999999642       24578899999998754321000  011133444443   456776642110         01


Q ss_pred             cccccceeeccCCcccCCchhhhchhhhhcccCCcccccc----cccceeEeec-ccc
Q psy3170         133 DILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPA----LVGGVRYVRT-QCD  185 (525)
Q Consensus       133 ~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~l~~~~~----~~g~v~~~~~-~Cg  185 (525)
                      ..+...|+|++..    .....|++++    ++|+.+...    +.|.++|... .|+
T Consensus       414 ~~~~~~~iCag~~----~~~~~C~GDS----GGPL~~~~~~~~~l~GIvS~G~~~~C~  463 (509)
T 2odp_A          414 EVVTDQFLCSGTQ----EDESPCKGES----GGAVFLERRFRFFQVGLVSWGLYNPCL  463 (509)
T ss_dssp             GTSCTTEEEECCT----TCCCCCGGGT----TCEEEEEETTEEEEEEEEEEESCCTTC
T ss_pred             ccccCCEEEeCCC----CCCcccCCCc----cCceEEEECCeEEEEEEEEEcCCCCCC
Confidence            2356789998752    2346899887    788877543    6788888764 686

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.64  E-value=2.7e-15  Score=140.82  Aligned_cols=168  Identities=17%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      ...|+|+||+++||||||||+..  ...+.|+++..          ....+.+..||.         +|||||||+    
T Consensus        57 ~~~GsG~iI~~~~VlTaaH~v~~--~~~~~V~~~~~----------~~~~~~v~~~~~---------~DiAll~l~----  111 (237)
T 3k6y_A           57 VLEGTGFVISPDRVMTNAHVVAG--SNNVTVYAGDK----------PFEATVVSYDPS---------VDVAILAVP----  111 (237)
T ss_dssp             EEEEEEEEEETTEEEECGGGTTT--CSEEEEEETTE----------EEECEEEEEETT---------TTEEEEECT----
T ss_pred             ceeEEEEEEECCEEEECHHHcCC--CceEEEEECCc----------EEEEEEEEEcCC---------CCEEEEEeC----
Confidence            56899999999999999999965  34455555421          222333444542         699999998    


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcCC
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGD  438 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~gD  438 (525)
                       +..++|++|+......+..++++||+....      ..+....+.......|...+..  ..+.|......+...|.||
T Consensus       112 -~~~~~~~~l~~~~~~~G~~v~v~G~p~g~~------~~~~~g~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gd  182 (237)
T 3k6y_A          112 -HLPPPPLVFAAEPAKTGADVVVLGYPGGGN------FTATPARIREAIRLSGPDIYGD--PEPVTRDVYTIRADVEQGD  182 (237)
T ss_dssp             -TCCSCCCCBCSSCCCTTCEEEEEECGGGCS------CEEEEEEEEEEEEEEECCTTCC--SSCEEEEEEEEESCCCTTC
T ss_pred             -CCCCCceecCCCCCCCCCEEEEEECCCCCC------CccceeEEEeeEeecccccccC--CCcccccEEEecCccCCCc
Confidence             346889999855557789999999975322      1222222222222233332221  1112322222235689999


Q ss_pred             CCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       439 sGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      |||||+..     +..|+||+|++..-.  ..-.....+....+||++.
T Consensus       183 SGGPLv~~-----~G~vvGI~s~~~~~~--~~~~~aip~~~v~~~l~~~  224 (237)
T 3k6y_A          183 SGGPLIDL-----NGQVLGVVFGAAIDD--AETGFVLTAGEVAGQLAKI  224 (237)
T ss_dssp             TTCEEECT-----TSCEEEEEEEECSSS--TTEEEEEEHHHHHGGGGGT
T ss_pred             cHHHEECC-----CCEEEEEEEeeccCC--CcEEEEEEHHHHHHHHHHc
Confidence            99999853     235999999975321  1234556666666776665

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.62  E-value=2.6e-16  Score=172.94  Aligned_cols=172  Identities=19%  Similarity=0.244  Sum_probs=121.2

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC-------CCCcCceEEEEeCCCccCCCc
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIALLKIAPPVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~nDIALl~L~~~v~~~~~   73 (525)
                      .|||||||+... ....+.|++|...        +.+.|.++++||+|+...       ..+.||||||||++|+.|+++
T Consensus       495 ~VLTAAHC~~~~~~~~~~~V~~G~~~--------~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~  566 (741)
T 3hrz_D          495 FVLTAAHCFTVDDKEHSIKVSVGGEK--------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT  566 (741)
T ss_dssp             EEEECGGGCC-----CCEEEEETTCS--------CCEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSS
T ss_pred             EEEEchhhccccCCcceEEEEeCCCc--------eEEEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCC
Confidence            489999999653 3467899999543        578999999999998642       136899999999999999999


Q ss_pred             eeeeecCCCC-------CCCCCCEEEEeccccccCCcc-----cccccceeeeeeecC---cccccccccc--------c
Q psy3170          74 LKPACLNRAH-------NVKSPTAIASGFGKLNYFECT-----QYSKIQDESPIALAP---ALVGGVRYVK--------T  130 (525)
Q Consensus        74 v~picL~~~~-------~~~~~~~~v~GWG~~~~~~~~-----~~~~~~~~~~~~~~~---~~~c~~~~~~--------~  130 (525)
                      |+|||||...       ...+..|+++|||.+......     ..+..++...+.+.+   ...|...+..        .
T Consensus       567 v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~  646 (741)
T 3hrz_D          567 IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD  646 (741)
T ss_dssp             CCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSS
T ss_pred             ccccccCCcccccchhccCCCCccccccccccccccccceeccccccccccceeEeecCcccchhhhhhhhccccccccc
Confidence            9999999532       356788999999987654311     135567777787776   5567653211        1


Q ss_pred             cccccccceeeccCCcccCCchhhhchhhhhcccCCcccccc----cccceeEee-ccccC
Q psy3170         131 QCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPA----LVGGVRYVR-TQCDI  186 (525)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~l~~~~~----~~g~v~~~~-~~Cg~  186 (525)
                      .-..+...|+|++...+. .....|++++    ++|+.+...    ++|.++|.. ..|+.
T Consensus       647 ~~~~i~~~~lCag~~~~~-~~~~~C~GDS----GGPL~~~~~~~~~lvGIvS~G~~~~C~~  702 (741)
T 3hrz_D          647 ISEVVTPRFLCTGGVSPY-ADPNTCRGDS----GGPLIVHKRSRFIQVGVISWGVVDVCKN  702 (741)
T ss_dssp             GGGTSCTTEEEEESSSSS-CCCCCCGGGT----TCEEEEEETTEEEEEEEEEEESSCCCC-
T ss_pred             cccccCCCeEecCCcCCC-CCCCcCcCcc----cCceEEeeCCeEEEEEEEeecCCcccCC
Confidence            123467789998764321 1346799887    788876654    678888875 47863

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.59  E-value=5.2e-16  Score=143.48  Aligned_cols=93  Identities=9%  Similarity=0.074  Sum_probs=72.4

Q ss_pred             ceeeeccCcccCC----CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC--ccCCCcee
Q psy3170           2 VNNHAAHCITSPL----GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP--VEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~~----~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~--v~~~~~v~   75 (525)
                      .|||||||+....    ...+.|++|.++..   ...+.+.|+++++||+|+.. ....||||||||++|  +.+++.|+
T Consensus        35 ~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~---~~~~~~~v~~~~~hp~y~~~-~~~~~DiAll~L~~~~~~~~~~~v~  110 (218)
T 3cp7_A           35 TVATAGHCLHDGNGGQFARNFVFAPAYDYGE---SEHGVWAAEELVTSAEWANR-GDFEHDYAFAVLETKGGTTVQQQVG  110 (218)
T ss_dssp             EEEECGGGTBCCTTCBBCEEEEEEETCSSSC---CTTCCEEEEEEEECHHHHHH-CCGGGCCEEEEECCBTTBCHHHHHS
T ss_pred             EEEEChHhcCcCCCCeeecCEEEECcccCCC---CCccEEEEEEEEECcccccC-CCCcCCEEEEEEeCCCCcChhHhcC
Confidence            4899999996532    13577888976542   22346889999999999631 146799999999999  88999999


Q ss_pred             -eeecCCCCCCCCCCEEEEeccccc
Q psy3170          76 -PACLNRAHNVKSPTAIASGFGKLN   99 (525)
Q Consensus        76 -picL~~~~~~~~~~~~v~GWG~~~   99 (525)
                       +++|+... ..+..|+++|||.+.
T Consensus       111 ~~~~l~~~~-~~g~~~~v~GwG~~~  134 (218)
T 3cp7_A          111 TASPIAFNQ-PRGQYYSAYGYPAAA  134 (218)
T ss_dssp             CCBCBCCSC-CSSCEEEEEECCCST
T ss_pred             cccceeecC-CCCCEEEEEeCCCCC
Confidence             99998643 467889999999875

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.58  E-value=2.6e-15  Score=130.56  Aligned_cols=122  Identities=17%  Similarity=0.206  Sum_probs=94.8

Q ss_pred             CCcCceEEEEeCCCccCCCceeeeecCCCCCCCCCCEEEEeccccccCCcc-cccccceeeeeeecCccccccccccccc
Q psy3170          54 SQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECT-QYSKIQDESPIALAPALVGGVRYVKTQC  132 (525)
Q Consensus        54 ~~~nDIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~  132 (525)
                      ++.||||||||++|+.|+++|+|||||......+..|+++|||.+..+... ..+..|+.+.+.+++...|...+..   
T Consensus         5 ~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~---   81 (152)
T 2pka_B            5 DYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPD---   81 (152)
T ss_dssp             BCTTCCEEEEESSCCCCCSSCCCCCCCSSCCCTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCSS---
T ss_pred             CCCCCEEEEEECCCCcCCCCEEeEECCCCCCCCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhcC---
Confidence            568999999999999999999999999876667889999999998754410 3567899999999999999876543   


Q ss_pred             cccccceeeccCCcccCCchhhhchhhhhcccCCcccccccccceeEeeccccC
Q psy3170         133 DILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       133 ~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                       .....|+|++...   .....|++++    ++|+.+...+.|.+++....|+.
T Consensus        82 -~~~~~~iCa~~~~---~~~~~C~GDs----GgPL~~~g~l~Gi~S~g~~~C~~  127 (152)
T 2pka_B           82 -KVTESMLCAGYLP---GGKDTCMGDS----GGPLICNGMWQGITSWGHTPCGS  127 (152)
T ss_dssp             -BCCTTEEEEECTT---SSCBCCTTCT----TCEEEETTEEEEEECCCCSSTTC
T ss_pred             -CCCCCEEeeccCC---CCCcccCCcc----ccceEECCEEEEEEecCCCCCCC
Confidence             3566788887532   1245788876    78887766677877776566864

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.53  E-value=1.6e-14  Score=134.96  Aligned_cols=170  Identities=15%  Similarity=0.087  Sum_probs=105.8

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ...|+|+||+++ ||||+|||+..  ...+.|+++..         ....++-+.    ++     ..+|||||||+.+.
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~--~~~i~V~~~~g---------~~~~a~vv~----~d-----~~~DlAllkl~~~~  114 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGG--ADNITVTMLDG---------SKYDAEYIG----GD-----EELDIAVIKIKASD  114 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSS--CSSCEEECTTS---------CEEEBCCCE----EE-----TTTTEEEEEBCCSS
T ss_pred             CceEEEEEEeCCCEEEEChHHhCC--CCEEEEEECCC---------CEEEEEEEE----Ec-----CCCCEEEEEEcCCC
Confidence            578999999986 99999999975  34566665421         111111111    11     23799999999875


Q ss_pred             ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEEEeCCCCcC
Q psy3170         358 EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCATVMAGGKD  433 (525)
Q Consensus       358 ~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca~~~~~~~~  433 (525)
                         ..+.|++|+... ...+..+.+.||+....      ..+..   .+++...|.-....   ....++|+     +..
T Consensus       115 ---~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~------~~vt~---Givs~~~r~~~~~~~~~~~~~~i~t-----da~  177 (239)
T 1l1j_A          115 ---KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQ------HTVTV---GVVSATNRRIPKPDGSGYYVGLIQT-----DAA  177 (239)
T ss_dssp             ---SCCCCCEECCGGGCCTTCEEEEEECTTSSS------CEEEE---EEEEEEEEEEECTTSSCEEEEEEEE-----SSC
T ss_pred             ---CCCceEEecCccCCccccEEEEEECCCCCC------CcEEE---EEEeccccccccCCCccccCCEEEE-----CCC
Confidence               467899998653 46788999999975321      11111   11211112100000   12356776     346


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .|+|||||||+..     +..|+||.+++..-+.....+....+....+++++.+..
T Consensus       178 i~~G~SGGPLv~~-----~G~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~  229 (239)
T 1l1j_A          178 INPGNSGGPLLNI-----HGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQ  229 (239)
T ss_dssp             CCTTTTTSEEECS-----SSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC-
T ss_pred             CCCCCccHHhccC-----CCeEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHC
Confidence            8999999999842     346999999985411112346667777888888887643

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.53  E-value=5.4e-14  Score=130.95  Aligned_cols=166  Identities=16%  Similarity=0.118  Sum_probs=97.8

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ...++|+||+++ ||||||||+..  ...+.|+++.         ........+..+|.         +|||||+|+.+.
T Consensus        62 ~~~GSG~iI~~~G~VLTaaHvv~~--~~~i~V~~~~---------g~~~~a~v~~~d~~---------~DlAlL~l~~~~  121 (231)
T 3tjo_A           62 VASGSGFIVSEDGLIVTNAHVVTN--KHRVKVELKN---------GATYEAKIKDVDEK---------ADIALIKIDHQG  121 (231)
T ss_dssp             EEEEEEEECSTTCEEEEETTTCCS--SSEEEEECTT---------SCEEEEEEEEEETT---------TTEEEEECCCSS
T ss_pred             cceEEEEEEeCCCEEEEchhcccC--CceEEEEcCC---------CCEEEEEEEEecCC---------CCEEEEEecCCC
Confidence            368999999998 99999999965  3444444321         12223333444442         699999998763


Q ss_pred             ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                          .+.++.|+... ...+..++++||+....      ..+....+.......+..........+++.     +...|.
T Consensus       122 ----~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~~~~g~vs~~~~~~~~~~~~~~~~~~i~~-----da~i~~  186 (231)
T 3tjo_A          122 ----KLPVLLLGRSSELRPGEFVVAIGSPFSLQ------NTVTTGIVSTTQRGGKELGLRNSDMDYIQT-----DAIINY  186 (231)
T ss_dssp             ----CCCCCCBCCGGGCCTTCEEEEEEEEETTE------EEEEEEEEEECC-------------CCEEE-----SSCCCT
T ss_pred             ----CCCceecCCcCCCCCCCEEEEEECCCCCC------CceeeEEEeeccccccccccCCCcccEEEE-----cCCcCC
Confidence                45678886543 35788999999985321      112222222222211111111111234444     235889


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |||||||+..     +..|+||+|++..++    -.....+....+|+++..
T Consensus       187 G~SGGPLv~~-----~G~vVGI~s~~~~~g----~~~aip~~~i~~~l~~~~  229 (231)
T 3tjo_A          187 GNAGGPLVNL-----DGEVIGINTLKVTAG----ISFAIPSDKIKKFLTESH  229 (231)
T ss_dssp             TTTTSEEECT-----TSCEEEEEEEEEETT----EEEEEEHHHHHHHHHHHH
T ss_pred             CCchhHeecC-----CCeEEEEEeEEecCC----eEEEEEHHHHHHHHHHHh
Confidence            9999999842     245999999985432    344566666777776543

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.50  E-value=4e-14  Score=140.33  Aligned_cols=173  Identities=17%  Similarity=0.128  Sum_probs=109.0

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .-.++|+||+++ ||||+|||+..  ...+.|.++.         ........+..+|         .+|||||||+.|.
T Consensus        52 ~g~GSG~iI~~~G~IlT~aHvv~~--~~~i~V~~~~---------g~~~~a~~v~~d~---------~~DlAlLkl~~~~  111 (348)
T 3qo6_A           52 QGSGSGFVWDKQGHIVTNYHVIRG--ASDLRVTLAD---------QTTFDAKVVGFDQ---------DKDVAVLRIDAPK  111 (348)
T ss_dssp             EEEEEEEEEETTTEEEECHHHHTT--CSEEEEECTT---------SCEEEEEEEEEEG---------GGTEEEEECCCCG
T ss_pred             CceEEEEEEeCCCEEEECHHHhCC--CcEEEEEECC---------CCEEEEEEEEEcC---------cCCEEEEEEcCCC
Confidence            457999999998 99999999975  3344444321         1122233333333         3699999999873


Q ss_pred             ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                         ..+.|++|+... ...+..+++.||+....      ..+....+..+....|...........++.     +...|+
T Consensus       112 ---~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~------~~~~~g~vs~~~~~~~~~~~~~~~~~~i~~-----da~i~~  177 (348)
T 3qo6_A          112 ---NKLRPIPVGVSADLLVGQKVFAIGNPFGLD------HTLTTGVISGLRREISSAATGRPIQDVIQT-----DAAINP  177 (348)
T ss_dssp             ---GGCCCCCBCCSTTCCTTCEEEEEECGGGCT------TEEEEEEEEEEEEEECCSSSSSCEEEEEEE-----CSCCCT
T ss_pred             ---CCceeEEecCcccCCCCCEEEEEECCCCCC------CcEeEEEEEeeccccccccCCCcccCEEEE-----eCCcCC
Confidence               367889997654 35789999999985422      123333333333222222111111123332     346899


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |||||||+..     ...|+||+|++. .++.....+.+..+....+||++.+..
T Consensus       178 G~SGGPLvn~-----~G~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~  227 (348)
T 3qo6_A          178 GNSGGPLLDS-----SGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRF  227 (348)
T ss_dssp             TCTTCEEECT-----TSCEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHH
T ss_pred             CCcHHHhhCC-----CCeEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhC
Confidence            9999999853     235999999974 344344577888898899999887643

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.47  E-value=2.8e-13  Score=133.13  Aligned_cols=175  Identities=14%  Similarity=0.086  Sum_probs=98.8

Q ss_pred             eeEeEEEEEeC-CEEEecCCCCCCCC-------CCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         279 KWFCGGSLISP-NYVMTAAHCITSPL-------GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       279 ~~~C~GtLIs~-~~VLTAAhCv~~~~-------~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                      ...|+|+||++ .||||+|||+....       ...+.|+++..         .....+ ++ +  |+     ..+||||
T Consensus        30 ~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g---------~~~~a~-vv-~--~d-----~~~DlAl   91 (324)
T 1y8t_A           30 SEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDG---------RTAPFT-VV-G--AD-----PTSDIAV   91 (324)
T ss_dssp             -CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTC---------CEECEE-EE-E--CC-----TTTTEEE
T ss_pred             CceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCC---------CEEEEE-EE-E--eC-----CCCCEEE
Confidence            57899999998 69999999997532       12455555321         111122 22 1  22     2379999


Q ss_pred             EEECCCcccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCC
Q psy3170         351 LKIAPPVEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMA  429 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~  429 (525)
                      |+|+.+    ..+.|++|+... ...+..+.++||....... .....+......+......  .+......++|+.   
T Consensus        92 lkl~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~-~~~G~vs~~~~~~~~~~~~--g~~~~~~~~i~~d---  161 (324)
T 1y8t_A           92 VRVQGV----SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGT-VTTGIVSALNRPVSTTGEA--GNQNTVLDAIQTD---  161 (324)
T ss_dssp             EEECSC----CSCCCCEECCSTTCCTTCEEEEEECGGGCTTE-EEEEEEEEEEEEECC---------CCCEEEEEEC---
T ss_pred             EEECCC----CCCceEEecCcccCCCCCEEEEEEcCCCCCCc-EeeeEEeeccccccccccc--CcccccCCEEEEc---
Confidence            999987    357899998653 4678999999995321100 0011111110000000000  0001234578873   


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCC--------CCCCceEEEEcCCchhhhcccc
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG--------HANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~--------~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                        ...|+|||||||+..     ...|+||++++..-.        .......+..+....+++.+.+
T Consensus       162 --~~~~~G~SGGPlv~~-----~G~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~  221 (324)
T 1y8t_A          162 --AAINPGNSGGALVNM-----NAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELI  221 (324)
T ss_dssp             --SCCCTTCTTEEEECT-----TSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHH
T ss_pred             --CCCCCCCccCcEECC-----CCeEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHH
Confidence              468999999999853     246999999974321        0112355666666666665544

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.42  E-value=1.6e-12  Score=128.02  Aligned_cols=166  Identities=16%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ...++|+||+++ ||||||||+..  ...+.|.++.         ......+.+..||.         +|||||+|+.+.
T Consensus        45 ~~~GSG~iI~~~G~ILTaaHvv~~--~~~i~V~~~~---------g~~~~a~~~~~d~~---------~DlAlL~l~~~~  104 (332)
T 3num_A           45 VASGSGFIVSEDGLIVTNAHVVTN--KHRVKVELKN---------GATYEAKIKDVDEK---------ADIALIKIDHQG  104 (332)
T ss_dssp             EEEEEEEEEETTTEEEECTTTCCT--TSEEEEEETT---------SCEEEEEEEEEETT---------TTEEEEEECCSS
T ss_pred             eeeEEEEEEeCCCEEEEChHHcCC--CCEEEEEECC---------CCEEEEEEEEecCC---------CCeEEEEEcCCC
Confidence            568999999998 99999999975  3445554431         12333555555653         599999999763


Q ss_pred             ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                          .+.++.|+... ...+..++++||+....      ..+....+.......+...+.......++.     +...|.
T Consensus       105 ----~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~~~~g~vs~~~~~~~~~~~~~~~~~~i~~-----d~~i~~  169 (332)
T 3num_A          105 ----KLPVLLLGRSSELRPGEFVVAIGSPFSLQ------NTVTTGIVSTTQRGGKELGLRNSDMDYIQT-----DAIINY  169 (332)
T ss_dssp             ----CCCCCCBCCTTSCCTTCEEEEECC-----------CCEEEEEEEEC--------------CCEEE-----SSCCCT
T ss_pred             ----CCceeeecCcccCCCCCEEEEEECCCCCC------cceeeeEEEeecccccccCcCCCcCCEEEE-----ECCcCC
Confidence                45677886543 35688999999985322      122222333222222222111111234444     235788


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |||||||+..     ...|+||+|++...+    -+....+.....|+.+.+
T Consensus       170 G~SGGPlv~~-----~G~vvGI~s~~~~~g----~~~aip~~~i~~~l~~~~  212 (332)
T 3num_A          170 GNAGGPLVNL-----DGEVIGINTLKVTAG----ISFAIPSDKIKKFLTESH  212 (332)
T ss_dssp             TTTTSEEEET-----TSCEEEEEEEEEETT----EEEEEEHHHHHHHHHHHC
T ss_pred             CCcHHHhhCC-----CCcEEEEEeeEeccc----ceEEECHHHHHHHHHHHh
Confidence            9999999853     235999999985432    355566666666766544

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.42  E-value=1.4e-12  Score=122.06  Aligned_cols=173  Identities=14%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ...++|+||+++ ||||+|||+..  ...+.|.+..         ......+.+..||.         +|||||+|+.+.
T Consensus        52 ~~~GsG~ii~~~G~IlTaaHvv~~--~~~~~V~~~~---------g~~~~a~vv~~d~~---------~DlAll~l~~~~  111 (237)
T 3lgi_A           52 RTLGSGVIMDQRGYIITNKHVIND--ADQIIVALQD---------GRVFEALLVGSDSL---------TDLAVLKINATG  111 (237)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHTT--CSEEEEECTT---------SCEEEEEEEEEETT---------TTEEEEECCCSS
T ss_pred             ceEEEEEEEeCCCEEEEeeeecCC--CCEEEEEeCC---------CCEEEEEEEEEcCC---------CCEEEEEecCCC
Confidence            468999999998 99999999975  3334443321         12233444444543         599999998765


Q ss_pred             ccCCCccceecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                          .+.++.|+.. ....+..+++.||+...      ...+....+.......+..   ......++.     +...|.
T Consensus       112 ----~~~~~~l~~~~~~~~G~~v~~~G~p~~~------~~~~~~g~vs~~~~~~~~~---~~~~~~i~~-----d~~i~~  173 (237)
T 3lgi_A          112 ----GLPTIPINARRVPHIGDVVLAIGNPYNL------GQTITQGIISATGRIGLNP---TGRQNFLQT-----DASINH  173 (237)
T ss_dssp             ----CCCCCCCCTTCCCCTTBEEEEEECGGGS------CSEEEEEEEEEECCSSCCT---TSCSCCEEE-----CSCCCT
T ss_pred             ----CCceEeccCcccCCCCCEEEEEECCCCC------CCcEEEEEEEecccccccC---CCcCCEEEE-----cCccCC
Confidence                3567888754 34668899999997432      1223333333332222211   112344544     235799


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCC----CCCceEEEEcCCchhhhcccccccccC
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGH----ANTPAIYTRVSYYVPWIVHTVWPDQFP  494 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~----~~~p~v~t~v~~~~~WI~~~i~~~~~~  494 (525)
                      |||||||+..     ...|+||+|++..-..    .........+....+++++.+.....+
T Consensus       174 G~SGGPlv~~-----~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~~  230 (237)
T 3lgi_A          174 GNSGGALVNS-----LGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI  230 (237)
T ss_dssp             TCTTCEEECT-----TCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHSSCC
T ss_pred             CCchHHeeCC-----CCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcCCCC
Confidence            9999999853     3459999999743221    122355566677777777777554444

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.35  E-value=1.6e-12  Score=127.43  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=102.6

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ...|+|++|+++ ||||+|||+..  ...+.|+++.         ......+ ++ +  |+     ..+|||||+|+.+.
T Consensus        46 ~~~gsG~iI~~~G~IlT~aHvv~~--~~~i~V~~~~---------g~~~~a~-v~-~--~d-----~~~DlAllkl~~~~  105 (325)
T 1lcy_A           46 ISNGSGFVVAADGLIVTNAHVVAD--RRRVRVRLLS---------GDTYEAV-VT-A--VD-----PVADIATLRIQTKE  105 (325)
T ss_dssp             EEEEEEEEEETTTEEEECHHHHTT--CSEEEEECTT---------SCEEEEE-EE-E--EE-----TTTTEEEEECCCSS
T ss_pred             cccEEEEEEeCCCEEEECHHHcCC--CCEEEEEeCC---------CCEEEEE-EE-E--EC-----CCCCEEEEEEcCCC
Confidence            578999999998 99999999976  3445554431         1122222 21 1  21     23799999998763


Q ss_pred             ccCCCccceecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcc-cC--CCCCCcEEEEeCCCCcC
Q psy3170         358 EFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ-ET--TLISSQLCATVMAGGKD  433 (525)
Q Consensus       358 ~~~~~v~picL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~-~~--~~~~~~~Ca~~~~~~~~  433 (525)
                          .+.|++|+.. ....+..+.+.||+....         +.....+++...|... +.  .....++|+.     ..
T Consensus       106 ----~~~~~~l~~~~~~~~G~~v~~~G~p~~~~---------~~v~~G~vs~~~~~~~~~g~~~~~~~~i~~d-----~~  167 (325)
T 1lcy_A          106 ----PLPTLPLGRSADVRQGEFVVAMGSPFALQ---------NTITSGIVSSAQRPARDLGLPQTNVEYIQTD-----AA  167 (325)
T ss_dssp             ----CCCCCCBCCGGGCCTTCEEEECCCTTSSS---------SCCEEEEBCSCSCC---------CCCCEEES-----SC
T ss_pred             ----CCceEEecccccCCCCCEEEEEECCCCCC---------CcEEeEEEecccccccccCCCCCCCCEEEEc-----CC
Confidence                4678888764 346788999999985421         1223445555555321 11  1345688873     36


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      .|+|||||||+..     +..|+||.+++..-    .-.....+....+|+++..
T Consensus       168 ~~~G~SGGPl~~~-----~G~vVGI~s~~~~~----g~~~aip~~~i~~~l~~~~  213 (325)
T 1lcy_A          168 IDFGNAGGPLVNL-----DGEVIGVNTMKVTA----GISFAIPSDRLREFLHRGE  213 (325)
T ss_dssp             CSTTTTTSEEEET-----TSCEEEEEEEEEET----TEEEEEEHHHHHHHTCC--
T ss_pred             CCCCCccccEECC-----CCEEEEEEeEeecC----CeeEEEEHHHHHHHHHHhh
Confidence            8999999999853     23599999987431    2355566666667776643

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.32  E-value=6.6e-12  Score=122.86  Aligned_cols=167  Identities=14%  Similarity=0.144  Sum_probs=100.6

Q ss_pred             ceeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         278 VKWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       278 ~~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ....|+|+||+++ ||||+|||+...  ..+.|+++.         ......+ ++ +  |+     ..+|||||+++.+
T Consensus        40 ~~~~gsG~iI~~~G~IlT~aHvv~~~--~~i~V~~~~---------g~~~~a~-v~-~--~d-----~~~DlAllk~~~~   99 (318)
T 1te0_A           40 IRTLGSGVIMDQRGYIITNKHVINDA--DQIIVALQD---------GRVFEAL-LV-G--SD-----SLTDLAVLIIKAT   99 (318)
T ss_dssp             EEEEEEEEECSTTCEEEEEHHHHTTC--SEEEEECTT---------SCEEEEE-EE-E--EE-----TTTTEEEEECCCS
T ss_pred             cCccEEEEEEeCCCEEEECHHHcCCC--CEEEEEeCC---------CCEEEEE-EE-E--eC-----CCceEEEEEEeCC
Confidence            3688999999998 999999999752  334444321         1111222 22 1  21     2379999999876


Q ss_pred             cccCCCccceecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC-CCCCCcEEEEeCCCCcCC
Q psy3170         357 VEFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET-TLISSQLCATVMAGGKDT  434 (525)
Q Consensus       357 ~~~~~~v~picL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~-~~~~~~~Ca~~~~~~~~~  434 (525)
                          ..+.|++|+.. ....+..+++.||.....      ..+....+.-..   . ..+. .....++|..     ...
T Consensus       100 ----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~~~~g~vs~~~---~-~~~~~~~~~~~i~~d-----~~~  160 (318)
T 1te0_A          100 ----GGLPTIPINARRVPHIGDVVLAIGNPYNLG------QTITQGIISATG---R-IGLNPTGRQNFLQTD-----ASI  160 (318)
T ss_dssp             ----SCCCCCCCCTTCCCCTTCEEEEECCCSSSS------CCEEEEEEEECC---C-CCCCTTCSCCSEEES-----SCC
T ss_pred             ----CCCceEEeeCccCCCCCCEEEEEEcCCCCC------CcEEeeEEeccc---c-cccCCCCcCCEEEEC-----CCC
Confidence                35678888764 346788999999753211      112222222111   1 1111 1234678863     468


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCC----CCCCceEEEEcCCchhhhcccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCG----HANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~----~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |+|||||||+..     ...|+||++++..-.    .......+..+....+|+++.+
T Consensus       161 ~~G~SGGPl~~~-----~G~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~  213 (318)
T 1te0_A          161 NHGNSGGALVNS-----LGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLI  213 (318)
T ss_dssp             CTTTTTSEEECT-----TCCEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCcCceECC-----CCeEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHH
Confidence            999999999853     235999999885321    1123455667666667766654

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.29  E-value=1.5e-11  Score=115.02  Aligned_cols=169  Identities=17%  Similarity=0.126  Sum_probs=96.7

Q ss_pred             eeEeEEEEEeCC--EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPN--YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ...++|+||+++  ||||+|||+..  ...+.|.+..         ......+-+..+|.         +|||||||+.+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~--a~~i~V~~~d---------g~~~~a~vv~~d~~---------~DlAlLkv~~~  121 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLND---------GREFDAKLIGSDDQ---------SDIALLQIQNP  121 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC------CEEEECTT---------SCEEEEEEEEEETT---------TTEEEEEESSC
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCC--CCEEEEEECC---------CCEEEEEEEEecCC---------CCEEEEEeccC
Confidence            457999999998  99999999975  3444444421         12223333444442         69999999865


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      .    .+.++.|.... ...+..+++.||....      ...+....+....   +..........++|..     ...|
T Consensus       122 ~----~~~~~~l~~s~~~~~G~~v~aiG~P~g~------~~~vt~G~vs~~~---~~~~~~~~~~~~i~td-----a~i~  183 (245)
T 3sti_A          122 S----KLTQIAIADSDKLRVGDFAVAVGNPFGL------GQTATSGIVSALG---RSGLNLEGLENFIQTD-----ASIN  183 (245)
T ss_dssp             C----SCCCCCBCCGGGCCTTBEEEEEECGGGS------CCEEEEEEEEECS---SCSSCCTTCSSCEEES-----SCCC
T ss_pred             C----CCceeeecCcCCCCCCCEEEEEECCCCC------CCcEEeeEEeeec---ccccCCCCccCEEEEc-----CCcC
Confidence            3    45677776543 4678899999985321      1122222222222   2211111223456652     3579


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCCCC-CCCCceEEEEcCCchhhhcccccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQCG-HANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~-~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .|+|||||+..     +..|+||.++..... .....+....+....+++++.+..
T Consensus       184 ~G~SGGPLvn~-----~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~  234 (245)
T 3sti_A          184 RGNSGGALLNL-----NGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDF  234 (245)
T ss_dssp             TTTTTSEEECT-----TSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHH
T ss_pred             CCcchhHeecC-----CCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHc
Confidence            99999999742     346999999875422 112234556666677777776643

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.28  E-value=8.6e-12  Score=111.89  Aligned_cols=162  Identities=17%  Similarity=0.129  Sum_probs=95.0

Q ss_pred             eeEeE-EEEEeC---CEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEEC
Q psy3170         279 KWFCG-GSLISP---NYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~-GtLIs~---~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~  354 (525)
                      ...|+ |.++++   .|||||+||+...  .  .+.++        . ..+ .+..+. ...| +     .+|+|||||+
T Consensus        11 ~~~CT~Gfiv~~~g~~~ilT~~Hv~~~~--~--~v~~~--------~-~~~-~~g~~~-~~~~-~-----~~DiAlikl~   69 (187)
T 1hpg_A           11 GSRCSAAFNVTKGGARYFVTAGHCTNIS--A--NWSAS--------S-GGS-VVGVRE-GTSF-P-----TNDYGIVRYT   69 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC--S--EEESS--------T-TCC-EEEEEE-EEEC-S-----BSCEEEEEEC
T ss_pred             CCcCcceEEEEECCeeEEEECcccCCCC--C--eEEeC--------C-Cce-eEEEEe-CccC-C-----CCCEEEEEeC
Confidence            35788 788876   4999999998652  2  12211        0 001 111110 0112 1     2699999999


Q ss_pred             CCcccCCCccc-----eecCC-CCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeC
Q psy3170         355 PPVEFSETLKP-----ACLNR-AHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM  428 (525)
Q Consensus       355 ~~~~~~~~v~p-----icL~~-~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~  428 (525)
                      .++.+...+..     +.+.. .....++.+...||...     .....+......+.-.       ......++|+.  
T Consensus        70 ~~~~~~~~v~~~~g~~~~i~~~~~~~~G~~v~~~G~~~g-----~t~G~v~~~~~~v~~~-------~~~~~~~i~t~--  135 (187)
T 1hpg_A           70 DGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTK-----VTSGTVTAVNVTVNYG-------DGPVYNMVRTT--  135 (187)
T ss_dssp             SSCCCCSEEECSSSCEEECCEECCCCTTCEEEEEETTTE-----EEEEEEEEEEEEEEET-------TEEEEEEEEEC--
T ss_pred             CCCCcCceEEecCCceeeeccccCCCCCCEEEEEEcCCC-----EeEEEEEEeEEEEEeC-------CCeEeeeEEec--
Confidence            87655433321     33322 23456788888898632     1122333333322100       00124577763  


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIV  485 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~  485 (525)
                         ...|+|||||||++.      ..++||+|++.. |. ...|.+|++|..+++.+.
T Consensus       136 ---~~~~~GdSGgpl~~~------~~~vGi~s~~~~~~~-~~~~~~~~~i~~~~~~lg  183 (187)
T 1hpg_A          136 ---ACSAGGDSGGAHFAG------SVALGIHSGSSGCSG-TAGSAIHQPVTEALSAYG  183 (187)
T ss_dssp             ---CCCCTTCTTCEEEET------TEEEEEEEEESCCBT-TBCCCEEEEHHHHHHHHT
T ss_pred             ---cccCCCCCCCeEEEC------CEEEEEEEeeCCCCC-CCCceEEEEHHHHHHHcC
Confidence               357899999999862      269999999964 76 457999999998877654

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.28  E-value=2.2e-12  Score=122.05  Aligned_cols=153  Identities=9%  Similarity=-0.003  Sum_probs=84.7

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccCC-----------cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCc
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSYS-----------VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV   68 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~~-----------~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v   68 (525)
                      -|||||||+...  ....+.|++|..+.....           .......+..+++||.       ..||||||||++|+
T Consensus        51 ~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~~-------~~nDIALLrL~~~v  123 (268)
T 1arb_A           51 YFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATY-------ATSDFTLLELNNAA  123 (268)
T ss_dssp             EEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEEE-------TTTTEEEEEESSCC
T ss_pred             EEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEecCC-------CCCceEEEEecCCC
Confidence            489999998642  224578888754321111           1122334778889983       25899999999985


Q ss_pred             cCCCceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccccc-ccccceeeccCCcc
Q psy3170          69 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCD-ILAMPMIIGGSRAK  147 (525)
Q Consensus        69 ~~~~~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~-~~~~~~~~~~~~~~  147 (525)
                      +                .+..++++|||.+...........+....+..++...|....  ..+. .+...|+|.+...+
T Consensus       124 ~----------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~~~~~--~~~~~~~~~~~iCag~~~~  185 (268)
T 1arb_A          124 N----------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSF--VAWGGGAGTTHLNVQWQPS  185 (268)
T ss_dssp             C----------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCEE--ECTTSSSCSSEEEEECCTT
T ss_pred             C----------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeecccccc--ccccccccCCeEEEeeecC
Confidence            2                234579999999875432111111111122222222332110  0011 23456888754311


Q ss_pred             cCCchhhhchhhhhcccCCccc-ccccccceeEeeccccC
Q psy3170         148 YGEFPHQCTQYSKIQDESPIAL-APALVGGVRYVRTQCDI  186 (525)
Q Consensus       148 ~g~~~~~C~~~~~~~~~~~l~~-~~~~~g~v~~~~~~Cg~  186 (525)
                         ....|.+++    ++|+.. ...++|.+++....|+.
T Consensus       186 ---~gdtC~gds----GgPl~~~~~~~~Gi~s~g~~~C~~  218 (268)
T 1arb_A          186 ---GGVTEPGSS----GSPIYSPEKRVLGQLHGGPSSCSA  218 (268)
T ss_dssp             ---SCCCCTTCT----TCEEECTTSCEEEEEEECSCCTTC
T ss_pred             ---CCCCccCcc----cCCcEeeCCEEEEEEeecCcccCC
Confidence               114788776    678765 44567888887557864

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.24  E-value=2.3e-12  Score=115.42  Aligned_cols=158  Identities=17%  Similarity=0.213  Sum_probs=91.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      ...|+.-.+-..+||||+||+...  ..  +++      .   +   -.    +++.+|.      .+|||||||+.+..
T Consensus        14 ~~~CT~Gf~~~~~ilTa~Hc~~~~--~~--v~~------~---d---g~----v~~~~~~------~~DiAlikl~~~~~   67 (189)
T 2ea3_A           14 RSRCSIGFAVNGGFITAGHCGRTG--AT--TAN------P---T---GT----FAGSSFP------GNDYAFVRTGAGVN   67 (189)
T ss_dssp             EEEEECCEEETTEEEECGGGCCTT--CE--EET------T---T---EE----EEEEECS------BSCEEEEEECTTCE
T ss_pred             CCCCccCEEccCeEEEchhcCCCC--CE--EEe------C---C---cE----EEeeCCC------CCCEEEEEECCCCc
Confidence            467998777777999999998642  21  211      0   0   11    1222221      36999999999876


Q ss_pred             cCCCcc-----ceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhh--cccCCCCCCcEEEEeCCC
Q psy3170         359 FSETLK-----PACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCS--KQETTLISSQLCATVMAG  430 (525)
Q Consensus       359 ~~~~v~-----picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~--~~~~~~~~~~~Ca~~~~~  430 (525)
                      +.+.+.     +++|+... ...++.+.  .||.+..        +....+..++...+.  ..+..+...++|+.    
T Consensus        68 ~~~~v~~~~g~~v~l~~s~~~~vG~~v~--~~G~~tG--------~t~G~Vs~~~~~v~~~~~~~~~~~~~~~~~~----  133 (189)
T 2ea3_A           68 LLAQVNNYSGGRVQVAGHTAAPVGSAVC--RSGSTTG--------WHCGTITALNSSVTYPEGTVRGLIRTTVCAE----  133 (189)
T ss_dssp             EEEEEECSSSCEEECCBCCCCCTTCEEE--EEETTTE--------EEEEEEEEEEEEEEETTEEEEEEEEESCCCC----
T ss_pred             cccceEecCCceeecCCCcCCCCCCEEE--EEEeCCc--------cEEEEEEecceEEEeCCccCcceEEeeeecc----
Confidence            665554     66776533 24455433  5553311        222223222221110  00000112233321    


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                           +|||||||++  +    ..++||+|++.. |. ...+.+|++|..+++|..=.+
T Consensus       134 -----~GDSGgpl~~--~----~~~vGi~s~~~~~c~-~~~~~~~~pi~~~l~~~gv~l  180 (189)
T 2ea3_A          134 -----PGDSGGSLLA--G----NQAQGVTSGGSGNCR-TGGTTFFQPVNPILQAYGLRM  180 (189)
T ss_dssp             -----TTCTTCEEEE--T----TEEEEEEEEEEEETT-TEEEEEEEEHHHHHHHHTCCB
T ss_pred             -----CCCccCeEEE--C----CEEEEEEeecCCCCC-CCCcEEEEEHHHHHHHCCeEE
Confidence                 7999999986  2    269999999865 65 346999999999999985444

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.22  E-value=1.8e-11  Score=115.13  Aligned_cols=92  Identities=15%  Similarity=0.158  Sum_probs=66.0

Q ss_pred             ceeeeccCcccCCCCCeEEE--EceeecccCC--cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCcc---CCCce
Q psy3170           2 VNNHAAHCITSPLGKPRYVR--FGLITKLSYS--VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE---FSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~--~G~~~~~~~~--~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~---~~~~v   74 (525)
                      .|||||||+.......+.|+  .|.++.....  ...+.+.++.++.|| |+     ..||||||||++|+.   |++.+
T Consensus        66 ~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~DiAll~l~~~~~~~~~~~~v  139 (242)
T 1agj_A           66 TVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP-FG-----AGVDLALIRLKPDQNGVSLGDKI  139 (242)
T ss_dssp             EEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCT-TC-----TTSCCEEEEECCCTTSCCHHHHS
T ss_pred             EEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCC-CC-----CCCcEEEEEEcCCCccccccccc
Confidence            48999999976433223444  4876542211  122467888899999 84     358999999999964   66789


Q ss_pred             eeeecCCC-CCCCCCCEEEEeccccc
Q psy3170          75 KPACLNRA-HNVKSPTAIASGFGKLN   99 (525)
Q Consensus        75 ~picL~~~-~~~~~~~~~v~GWG~~~   99 (525)
                      +|+||+.. ....+..++++|||...
T Consensus       140 ~~i~L~~~~~~~~g~~~~v~Gwg~~~  165 (242)
T 1agj_A          140 SPAKIGTSNDLKDGDKLELIGYPFDH  165 (242)
T ss_dssp             CCCEECCSTTCCTTCEEEEEECCTTT
T ss_pred             cceecCccccCCCCCEEEEEeCCCCC
Confidence            99999854 34668889999999764

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.10  E-value=6.8e-11  Score=111.30  Aligned_cols=91  Identities=13%  Similarity=0.093  Sum_probs=67.6

Q ss_pred             ceeeeccCcccCCC--CCeEEEEceeeccc---CCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCc---cCCCc
Q psy3170           2 VNNHAAHCITSPLG--KPRYVRFGLITKLS---YSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV---EFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~~~--~~~~v~~G~~~~~~---~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v---~~~~~   73 (525)
                      .|||||||+.....  ..+.++.|.++...   .....+.+.++.++.|| |+     ..+|||||||++++   .+++.
T Consensus        59 ~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp-~~-----~~~DiALLkl~~~~~~~~~~~~  132 (246)
T 1qtf_A           59 TIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP-YG-----QGLDLAIIKLKPNEKGESAGDL  132 (246)
T ss_dssp             EEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCT-TC-----TTSCCEEEEECCCTTSCCHHHH
T ss_pred             EEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCC-CC-----CCCCEEEEEEeCCccccccccc
Confidence            48999999976433  45778888765422   01122478899999999 64     35799999999998   67778


Q ss_pred             eeeeecCCC-CCCCCCCEEEEecccc
Q psy3170          74 LKPACLNRA-HNVKSPTAIASGFGKL   98 (525)
Q Consensus        74 v~picL~~~-~~~~~~~~~v~GWG~~   98 (525)
                      ++|+||+.. ....+..|+++||+..
T Consensus       133 v~~i~L~~~~~~~~g~~v~v~G~p~g  158 (246)
T 1qtf_A          133 IQPANIPDHIDIAKGDKYSLLGYPYN  158 (246)
T ss_dssp             SCCCCCCSSCCCCTTCEEEEEECCTT
T ss_pred             eeeeecCCccccCCCCEEEEEECCCC
Confidence            999999854 3466889999999753

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.07  E-value=2.4e-10  Score=109.24  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=66.8

Q ss_pred             ceeeeccCcccCCC--CCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCc---cCCCceee
Q psy3170           2 VNNHAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV---EFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v---~~~~~v~p   76 (525)
                      .|||||||+.....  ..+.|++|.++..... .+ .+.+.+++.|+.        .+|||||||++++   .|++.++|
T Consensus        45 ~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~-~g-~~~~~~i~~~~~--------~~DIALLkL~~~~~~~~~~~~v~p  114 (274)
T 2o8l_A           45 TLLTNKHVVDATHGDPHALKAFPSAINQDNYP-NG-GFTAEQITKYSG--------EGDLAIVKFSPNEQNKHIGEVVKP  114 (274)
T ss_dssp             EEEECHHHHHTTTTCGGGEEEEETCCBTTBCT-TC-CEEEEEEEECSS--------SSCCEEEEECCCTTSCCTTTSSCC
T ss_pred             EEEEChhhCcccCCCcceEEEEecccCccccc-Cc-cEEEEEEEeCCC--------CCcEEEEEecCccccccccccccc
Confidence            48999999965422  3588999987653222 22 577888888863        3699999999997   47889999


Q ss_pred             eecCCC-CCCCCCCEEEEeccccc
Q psy3170          77 ACLNRA-HNVKSPTAIASGFGKLN   99 (525)
Q Consensus        77 icL~~~-~~~~~~~~~v~GWG~~~   99 (525)
                      +||+.. ....+..|+++|||...
T Consensus       115 i~L~~~~~~~~g~~v~v~Gwg~~~  138 (274)
T 2o8l_A          115 ATMSNNAETQTNQNITVTGYPGDK  138 (274)
T ss_dssp             CEECCCTTCCTTCEEEEEECCTTS
T ss_pred             ccccccccccCCCEEEEEECCCCC
Confidence            999854 34668899999999753

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.06  E-value=1.3e-10  Score=110.59  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             ceeeeccCcccCCC--CCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCc---cCCCceee
Q psy3170           2 VNNHAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV---EFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v---~~~~~v~p   76 (525)
                      .|||||||+.....  ..+.|++|.++..... . ..+.+.+++.|+.        .+|||||||++++   .|++.++|
T Consensus        45 ~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~-~-g~~~~~~i~~~~~--------~~DIALLkL~~~~~~~~~~~~v~p  114 (268)
T 1wcz_A           45 TLLTNKHVVDATHGDPHALKAFPSAINQDNYP-N-GGFTAEQITKYSG--------EGDLAIVKFSPNEQNKHIGEVVKP  114 (268)
T ss_dssp             EEEECHHHHGGGTTCGGGEEEEETCCBTTBCT-T-CCEEEEEEEECSS--------SSCCEEEEECCCTTSCCHHHHSCC
T ss_pred             EEEEChhhCCCccCCcceEEEEecccCccccc-C-CcEEEEEEecCCC--------CCcEEEEEecCcccccccccccce
Confidence            48999999975422  4589999987653222 1 2467888888752        4799999999997   47788999


Q ss_pred             eecCCC-CCCCCCCEEEEeccccc
Q psy3170          77 ACLNRA-HNVKSPTAIASGFGKLN   99 (525)
Q Consensus        77 icL~~~-~~~~~~~~~v~GWG~~~   99 (525)
                      +||+.. ....+..|+++|||...
T Consensus       115 i~L~~~~~~~~g~~v~v~Gwg~~~  138 (268)
T 1wcz_A          115 ATMSNNAETQVNQNITVTGYPGDK  138 (268)
T ss_dssp             CCBCCCSSCCTTCEEEEEECCTTS
T ss_pred             eecccccccCCCCEEEEEECCCCC
Confidence            999864 34568889999999653

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.03  E-value=9.9e-10  Score=108.18  Aligned_cols=167  Identities=17%  Similarity=0.144  Sum_probs=94.3

Q ss_pred             eeEeEEEEEeCC--EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPN--YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ...++|.+|+++  ||||+|||+..  ...+.|.+.         +......+-+..||.         +||||||++.+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~~--~~~i~V~~~---------dg~~~~a~vv~~d~~---------~DlAlLkv~~~  121 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLN---------DGREFDAKLIGSDDQ---------SDIALLQIQNP  121 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTT--EEEEEEECT---------TSCEEEEEEEEEETT---------TTEEEEEESSC
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCC--CCEEEEEeC---------CCcEEEEEEEEEcCC---------CCEEEEEEccc
Confidence            568999999997  99999999965  222333321         122333555555653         59999999765


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      .    .+.++.|.... ...+..+.+.||.....      .......+.-.   .+...........++.     +...|
T Consensus       122 ~----~~~~~~l~~s~~~~~G~~V~aiG~p~g~~------~~vt~G~Vs~~---~~~~~~~~~~~~~iq~-----da~i~  183 (345)
T 3stj_A          122 S----KLTQIAIADSDKLRVGDFAVAVGNPFGLG------QTATSGIVSAL---GRSGLNLEGLENFIQT-----DASIN  183 (345)
T ss_dssp             C----SCCCCCBCCGGGCCTTBEEEEEECGGGCS------CEEEEEEEEEE---EECCSSSSSSCCEEEE-----CSCCC
T ss_pred             C----CCceEeecCcccCCCCCEEEEEECCCCCC------CcEEeeEEeee---cccccCCCCccCEEEE-----ecccC
Confidence            3    45677776543 36788999999953211      11222222221   1111111111334443     34679


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      .|+|||||+..     +..|+||.++... .+....-+....+.....++++.+
T Consensus       184 ~GnSGGPLvn~-----~G~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (345)
T 3stj_A          184 RGNSGGALLNL-----NGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (345)
T ss_dssp             TTCTTCEEECT-----TSCEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHH
T ss_pred             CCcCccceeCC-----CCEEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHH
Confidence            99999999853     3459999987632 221112333444444445554433

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.90  E-value=2.7e-10  Score=101.56  Aligned_cols=40  Identities=30%  Similarity=0.509  Sum_probs=31.0

Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchh
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVP  482 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~  482 (525)
                      +|||||||++  +    ..++||+|++.. |. ...+.+|++|..+++
T Consensus       137 ~GDSGgpl~~--~----~~~vGi~s~g~~~c~-~~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          137 GGDSGGPWLT--G----SQAQGVTSGGTGDCR-SGGITFFQPINPLLS  177 (186)
T ss_dssp             TTCTTCEEEE--T----TEEEEEEEEEEEETT-TEEEEEEEEHHHHHH
T ss_pred             CCCccCeEEE--C----CEEEEEEeecCCCCC-CCCcEEEEEHHHHHH
Confidence            6999999986  2    268999999864 65 345899999887654

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=98.87  E-value=1e-09  Score=99.80  Aligned_cols=84  Identities=13%  Similarity=0.061  Sum_probs=58.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC----ccCCCceeee
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP----VEFSETLKPA   77 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~----v~~~~~v~pi   77 (525)
                      .|||||||+.........|+++....   ...++.+.+.+++.   |+.     .+|||||||+++    +.|++.++|+
T Consensus        33 ~VLTaaHcv~~~~~~~~~v~v~~~~~---~~~~~~~~~~~i~~---~~~-----~~DiAll~l~~~~~~~~~~~~~v~pi  101 (200)
T 2w7s_A           33 TIVTNKHIAKSNDIFKNRVSAHHSSK---GKGGGNYDVKDIVE---YPG-----KEDLAIVHVHETSTEGLNFNKNVSYT  101 (200)
T ss_dssp             EEEECHHHHHHHHHTTCCEEETCCSS---SCCCCEECEEEEEE---CSS-----SSSCEEEEECSBCTTSCBGGGSCCCC
T ss_pred             EEEEChhhcCCcccCCcEEEEEecCc---cCCCcEEEEEEEec---CCC-----cceEEEEEECCCCCCcccccccccce
Confidence            38999999865321123455654321   23345677777664   322     479999999996    8899999999


Q ss_pred             ecCCCCCCCCCCEEEEeccc
Q psy3170          78 CLNRAHNVKSPTAIASGFGK   97 (525)
Q Consensus        78 cL~~~~~~~~~~~~v~GWG~   97 (525)
                      ||+. ....+..++++||+.
T Consensus       102 ~l~~-~~~~g~~v~v~G~p~  120 (200)
T 2w7s_A          102 KFAD-GAKVKDRISVIGYPK  120 (200)
T ss_dssp             CBCC-CCCTTCEEEEEECTT
T ss_pred             eccc-cCCCCCEEEEEECCC
Confidence            9973 456688899999864

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.85  E-value=3.1e-08  Score=100.84  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             eeEeEEEEEeCC--EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPN--YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ...++|.+|+++  ||||+|||+..  ...+.|.+..         ......+-+..||.         +||||||++.+
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~--a~~i~V~~~d---------g~~~~a~vv~~d~~---------~DlAllkv~~~  121 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQ--AQKISIQLND---------GREFDAKLIGSDDQ---------SDIALLQIQNP  121 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCC--CCEEEEEeCC---------CCEEEEEEEEEcCC---------CCEEEEEecCC
Confidence            468999999997  99999999976  3445554431         12233444445543         59999999765


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      .    .+.++.|.... ...+..+.+.||....      ........+.-..   +......-....+..     +...|
T Consensus       122 ~----~l~~~~l~~s~~~~~G~~v~aiG~P~g~------~~~vt~G~vs~~~---r~~~~~~~~~~~iq~-----da~i~  183 (436)
T 4a8c_A          122 S----KLTQIAIADSDKLRVGDFAVAVGNPFGL------GQTATSGIVSALG---RSGLNLEGLENFIQT-----DASIN  183 (436)
T ss_pred             C----CCceEeccCcccCCCCCEEEEEEcCCCC------CccEEEEEEeeec---ccccCCCCccCEEEE-----cCccC
Confidence            3    45677886443 4678899999985321      1112222222222   111110111233433     23578


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCCCC-CCCCceEEEEcCCchhhhcccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQCG-HANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~-~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      .|+|||||+..     ...|+||.++..... ....-+....+....+++++.+
T Consensus       184 ~GnSGGPl~n~-----~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (436)
T 4a8c_A          184 RGNAGGALLNL-----NGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (436)
T ss_pred             CCCCcCcccCC-----CCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHH
Confidence            99999999742     456999998764321 1111233344444455555444

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=98.83  E-value=3.5e-09  Score=96.56  Aligned_cols=85  Identities=9%  Similarity=0.051  Sum_probs=59.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCC--------CccCCCc
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP--------PVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~--------~v~~~~~   73 (525)
                      .|||||||+..... ...+.+... .  ....++.+.+.+++.|+.        .+|||||||++        ++.|++.
T Consensus        33 ~VLTaaHcv~~~~~-~~~v~v~~~-~--~~~~~~~~~~~~i~~~~~--------~~DiAll~l~~~~~~~~~~~~~~~~~  100 (204)
T 2vid_A           33 TILTNKHVSKNYKV-GDRITAHPN-S--DKGNGGIYSIKKIINYPG--------KEDVSVIQVEERAIERGPKGFNFNDN  100 (204)
T ss_dssp             EEEECHHHHTTCCT-TCEEEESCC-S--SSCCSCEEEEEEEEECSS--------SSCCEEEEECSEEEEEETTEEEHHHH
T ss_pred             EEEEChhHCCCccC-CceEEEEec-c--ccCCCcEEEeeEEecCCC--------CCeEEEEEEcCccccccccccccccc
Confidence            48999999965321 123333211 1  122345678888887642        46999999995        5778888


Q ss_pred             eeeeecCCCCCCCCCCEEEEeccccc
Q psy3170          74 LKPACLNRAHNVKSPTAIASGFGKLN   99 (525)
Q Consensus        74 v~picL~~~~~~~~~~~~v~GWG~~~   99 (525)
                      ++|+||+. ....+..++++|||...
T Consensus       101 v~pi~l~~-~~~~g~~~~~~G~g~~~  125 (204)
T 2vid_A          101 VTPFKYAA-GAKAGERIKVIGYPHPY  125 (204)
T ss_dssp             CCCCCBCS-CCCTTCEEEEEECCCCC
T ss_pred             ccccccCC-cCCCCCEEEEEeCCCCC
Confidence            99999985 45678889999999753

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=98.79  E-value=3.8e-09  Score=96.72  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=60.0

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCC--------CccCCC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP--------PVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~--------~v~~~~   72 (525)
                      .|||||||+.... ...+.|++|..     ...++.+.+++++.   |+.     .+|||||||++        |+.|++
T Consensus        34 ~VLTaaHcv~~~~~~~~i~v~~~~~-----~~~g~~~~~~~v~~---~~~-----~~DiAll~l~~~~~~~~~~~~~~~~  100 (210)
T 2as9_A           34 TIITNKHVSKDYKVGDRITAHPNGD-----KGNGGIYKIKSISD---YPG-----DEDISVMNIEEQAVERGPKGFNFNE  100 (210)
T ss_dssp             EEEECHHHHHHCCTTCEEEESCCGG-----GCCSCEEEEEEEEE---CSS-----SSSCEEEEECSEEEEEETTEEEGGG
T ss_pred             EEEECHhHCCccCCCCEEEEEeCcc-----cCCCCEEEEEEEEe---CCC-----CCcEEEEEecCcccccccccccccc
Confidence            3899999986532 13466655542     12345677777765   332     47999999998        688889


Q ss_pred             ceeeeecCCCCCCCCCCEEEEecccc
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKL   98 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~   98 (525)
                      .++|++|+. ....+..++++|||..
T Consensus       101 ~v~~i~l~~-~~~~g~~v~v~G~p~~  125 (210)
T 2as9_A          101 NVQAFNFAK-DAKVDDKIKVIGYPLP  125 (210)
T ss_dssp             SCCCCCBCS-CCCTTCEEEEEECSST
T ss_pred             ccceeecCC-CCCCCCEEEEEeCCCC
Confidence            999999973 4567889999999863

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.67  E-value=7.1e-08  Score=98.41  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=92.4

Q ss_pred             ceeEeEEEEEeC--CEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         278 VKWFCGGSLISP--NYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       278 ~~~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      ..-.++|.+|++  .||||+|||+..  ...+.|.+.         +......+-+..||.         +|||||+++.
T Consensus        75 ~~~~GSGfiI~~~~G~IlTn~HVv~~--a~~i~V~~~---------dg~~~~a~vv~~d~~---------~DlAlLkv~~  134 (451)
T 3pv2_A           75 FESIGSGVIIDPNNGVIITNDHVIRN--ASLITVTLQ---------DGRRLKARLIGGDSE---------TDLAVLKIDA  134 (451)
T ss_dssp             EEEEEEEEEEETTTTEEEECHHHHTT--EEEEEEECT---------TSCEEECEEEEEETT---------TTEEEEECCC
T ss_pred             cceeEEEEEEECCCCEEEEChHHhCC--CCEEEEEEc---------CCCEEEEEEEecCcC---------CcEEEEEEcC
Confidence            457899999997  499999999975  233333331         122233444555553         5999999963


Q ss_pred             CcccCCCccceecCCCC-CCCCCcEEEEE--eeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCc
Q psy3170         356 PVEFSETLKPACLNRAH-NVKSPTAIASG--FGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK  432 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~-~~~~~~~~~~G--wg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~  432 (525)
                           ..+.++.|.... ...+..+.+.|  ||.....   ....+....+.........   ......+++.     +.
T Consensus       135 -----~~l~~~~l~~s~~~~~G~~V~aiG~P~G~~~~~---~~~~vt~Givs~~~r~~~~---~~~~~~~iqt-----da  198 (451)
T 3pv2_A          135 -----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFG---NSQSATFGIVSALKRSDLN---IEGVENFIQT-----DA  198 (451)
T ss_dssp             -----SSCCCCCBCCGGGCCTTCEEEEEECCCCC--------CCEEEEEEEEEEC-------------CCEEE-----SS
T ss_pred             -----cCCceeEecCcccCCCCCEEEEEECCCCccccc---cCCceeEEEEeeccccccC---CCCcceEEEE-----ec
Confidence                 345667776533 36788999999  5532111   1122333333333222110   0011334554     23


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCC-CCCCCCceEEEEcCCchhhhcccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      ..+.|+|||||+..     ...|+||.++... .+.....+....+....+++++.+
T Consensus       199 ~i~~GnSGGPl~n~-----~G~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  250 (451)
T 3pv2_A          199 AINPGNSGGALVNA-----KGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQII  250 (451)
T ss_dssp             CCCGGGTTSEEEET-----TCCEEEEEECCC------CCCEEEEEHHHHHHHHHHHH
T ss_pred             ccCCCCCcCcccCC-----CCeEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHH
Confidence            57899999999853     3459999987633 211122344455555555555544

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=98.64  E-value=3.2e-08  Score=75.20  Aligned_cols=45  Identities=22%  Similarity=0.265  Sum_probs=37.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT   50 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~   50 (525)
                      .|||||||+..    .+.|++|.+++.......+.+.|+++++||+|+.
T Consensus        35 ~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           35 WVLTAAHCKND----NYEVWLGRHNLFENENTAQFFGVTADFPHPGFNL   79 (80)
T ss_dssp             EEEECGGGCCS----CCEEEESCSBTTSCCTTCEEEEEEEEEECTTTTT
T ss_pred             EEEECHHHCCC----CcEEEEeeeEcCCCCCCcEEEEEEEEEECcCCCC
Confidence            48999999853    4679999998866666678899999999999974

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.63  E-value=2e-08  Score=89.80  Aligned_cols=40  Identities=30%  Similarity=0.523  Sum_probs=30.3

Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchh
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVP  482 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~  482 (525)
                      +|||||||++  +    ..++||+|++. .|. ...+.+|++|...++
T Consensus       140 ~GDSGgpl~~--~----~~~vGi~s~~~~~~~-~~~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFIS--G----TQAQGVTSGGSGNCR-TGGTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEE--T----TEEEEEEEEEEEETT-TEEEEEEEESHHHHH
T ss_pred             CCCccceEEE--C----CEEEEEEeccCCCCC-CCCceEEEEHHHHHH
Confidence            7999999985  2    26999999985 375 334789999876544

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=98.48  E-value=4.3e-08  Score=87.70  Aligned_cols=42  Identities=10%  Similarity=0.103  Sum_probs=36.1

Q ss_pred             cCceEEEEeCC-CccCCCceeeeecCC-CCCCCCCCEEEEeccc
Q psy3170          56 YHDIALLKIAP-PVEFSETLKPACLNR-AHNVKSPTAIASGFGK   97 (525)
Q Consensus        56 ~nDIALl~L~~-~v~~~~~v~picL~~-~~~~~~~~~~v~GWG~   97 (525)
                      .||||||||++ ++.+++.++|++|+. .....+..++++||+.
T Consensus        61 ~~DiAll~l~~~~~~~~~~v~~~~l~~~~~~~~g~~v~~~Gw~~  104 (185)
T 2qa9_E           61 NNDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTT  104 (185)
T ss_dssp             BSCEEEEEECCSSSCCCCEETTEECCEECCCCTTCEEEEEETTT
T ss_pred             CCCEEEEEecCCCccccCccceeeeCCcccCCCCCEEEEecCCC
Confidence            47999999999 999999999999974 3456788999999974

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.36  E-value=2.3e-06  Score=87.17  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=81.9

Q ss_pred             ceeEeEEEEEeCC--EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         278 VKWFCGGSLISPN--YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       278 ~~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      ....|+|.+|+++  ||||++||+..  ...+.|.+..         ......+-+..+|         ..|||||+++.
T Consensus        84 ~~~~GSG~ii~~~~g~IlTn~HVv~~--a~~i~V~~~d---------g~~~~a~vv~~d~---------~~DlAvlkv~~  143 (448)
T 1ky9_A           84 FMALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLSD---------GRKFDAKMVGKDP---------RSDIALIQIQN  143 (448)
T ss_dssp             EEEEEEEEEEETTTTEEEEEHHHHTT--EEEEEEEETT---------SCEEEEEEEEEET---------TTTEEEEEESS
T ss_pred             cccEEEEEEEECCCCEEEEChHHhCC--CCEEEEEECC---------CCEEEEEEEEEcC---------CCCEEEEEecC
Confidence            3578999999975  99999999965  2334444321         1122222222222         26999999986


Q ss_pred             CcccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCC
Q psy3170         356 PVEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT  434 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~  434 (525)
                      +-    .+.++.|.... ...+..+.+.||....      ........+....+..-.   ..-....++.     +...
T Consensus       144 ~~----~~~~~~l~~s~~~~~G~~V~aiG~P~g~------~~tvt~Givs~~~r~~~~---~~~~~~~iqt-----da~i  205 (448)
T 1ky9_A          144 PK----NLTAIKMADSDALRVGDYTVAIGNPFGL------GETVTSGIVSALGRSGLN---AENYENFIQT-----DAAI  205 (448)
T ss_dssp             CC----SCCCCCBCCGGGCCTTCEEEEEECTTSS------SCEEEEEEEEEESSCC--------CCCCEEE-----SCCC
T ss_pred             CC----CCceEEecccccCCCCCEEEEEECCCCC------CCeEEeEEEeeccccccC---CCCccCEEEE-----cCCC
Confidence            42    34566665543 3578889999974321      112222223322211000   0011234544     2357


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecC
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                      ++|+|||||+..     ...++||.+...
T Consensus       206 ~~GnSGGpl~n~-----~G~vvGI~~~~~  229 (448)
T 1ky9_A          206 NRGNAGGALVNL-----NGELIGINTAIL  229 (448)
T ss_dssp             TTSCCCSEEECT-----TSCEEEEEECSS
T ss_pred             CCCCCCCeeECC-----CCEEEEEEEEee
Confidence            899999999753     346999998763

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=98.29  E-value=1.2e-06  Score=81.52  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=51.9

Q ss_pred             eeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCCC
Q psy3170           3 NNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRA   82 (525)
Q Consensus         3 ~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~~   82 (525)
                      |||||||+..  ...+.|+++.          ..+.++.+..||+         +|||||||+     +..++|++|+..
T Consensus        70 VlTaaH~v~~--~~~~~V~~~~----------~~~~~~~v~~~~~---------~DiAll~l~-----~~~~~~~~l~~~  123 (237)
T 3k6y_A           70 VMTNAHVVAG--SNNVTVYAGD----------KPFEATVVSYDPS---------VDVAILAVP-----HLPPPPLVFAAE  123 (237)
T ss_dssp             EEECGGGTTT--CSEEEEEETT----------EEEECEEEEEETT---------TTEEEEECT-----TCCSCCCCBCSS
T ss_pred             EEECHHHcCC--CceEEEEECC----------cEEEEEEEEEcCC---------CCEEEEEeC-----CCCCCceecCCC
Confidence            7999999965  3567788774          1344555555552         599999998     346889999865


Q ss_pred             CCCCCCCEEEEecccc
Q psy3170          83 HNVKSPTAIASGFGKL   98 (525)
Q Consensus        83 ~~~~~~~~~v~GWG~~   98 (525)
                      ....+..+++.||+..
T Consensus       124 ~~~~G~~v~v~G~p~g  139 (237)
T 3k6y_A          124 PAKTGADVVVLGYPGG  139 (237)
T ss_dssp             CCCTTCEEEEEECGGG
T ss_pred             CCCCCCEEEEEECCCC
Confidence            5677899999999863

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=98.08  E-value=1.6e-06  Score=77.16  Aligned_cols=42  Identities=10%  Similarity=0.038  Sum_probs=34.7

Q ss_pred             cCceEEEEeCCCccCCCceeee----ecCC--CCCCCCCCEEEEeccc
Q psy3170          56 YHDIALLKIAPPVEFSETLKPA----CLNR--AHNVKSPTAIASGFGK   97 (525)
Q Consensus        56 ~nDIALl~L~~~v~~~~~v~pi----cL~~--~~~~~~~~~~v~GWG~   97 (525)
                      .||||||||++++.+++.|+++    +++.  .....+..+.+.||+.
T Consensus        53 ~~DiAlikl~~~~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~  100 (181)
T 2sga_A           53 NNDYGIIRHSNPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTT  100 (181)
T ss_dssp             BSCEEEEEESCGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTT
T ss_pred             CCCEEEEEccCCCcccceEEecCCcceeecccccCCCCCEEEEeecCC
Confidence            4799999999999998899998    7763  4456788899999874

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=98.07  E-value=1.7e-05  Score=68.64  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=47.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      ...++|.+| +.+|||++||+.+  .....|+++          ...... +++..    +     ..||||||++.+. 
T Consensus        20 ~~~GSGfii-~g~IlTn~HVV~~--~~~i~V~~d----------g~~~~a-~vv~d----~-----~~DlAlLkv~~~~-   75 (163)
T 2w5e_A           20 EGKGTGFFS-GNDIVTAAHVVGN--NTFVNVCYE----------GLMYEA-KVRYM----P-----EKDIAFITCPGDL-   75 (163)
T ss_dssp             TEEEEEEEE-TTEEEEEHHHHTT--CSEEEEEET----------TEEEEE-EEEEC----C-----SSSEEEEECCTTC-
T ss_pred             ceeEEEEEE-CCEEEecHHHhCC--CceEEEEEC----------CEEEEE-EEEEE----C-----CCCEEEEEecCCC-
Confidence            467999999 8999999999975  344444431          111122 23321    2     2699999998643 


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEee
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFG  385 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg  385 (525)
                        ..+.|+.|.....  .....+.|+.
T Consensus        76 --~~~~~l~l~~~~~--~~~v~~~G~p   98 (163)
T 2w5e_A           76 --HPTARLKLSKNPD--YSCVTVMAYV   98 (163)
T ss_dssp             --CCSCCCCBCSSCC--TTEEEEEEEE
T ss_pred             --CCcceEEcCCCCC--CCEEEEEEeC
Confidence              2334455543322  2456677764

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=97.94  E-value=1.4e-05  Score=73.94  Aligned_cols=72  Identities=21%  Similarity=0.133  Sum_probs=50.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.|+++         .++.+.++.+..+|.         +|||||||+.+.    .+.+++|+.
T Consensus        75 ~VLTaaHvv~~--~~~i~V~~~---------~g~~~~a~v~~~d~~---------~DlAlL~l~~~~----~~~~~~l~~  130 (231)
T 3tjo_A           75 LIVTNAHVVTN--KHRVKVELK---------NGATYEAKIKDVDEK---------ADIALIKIDHQG----KLPVLLLGR  130 (231)
T ss_dssp             EEEEETTTCCS--SSEEEEECT---------TSCEEEEEEEEEETT---------TTEEEEECCCSS----CCCCCCBCC
T ss_pred             EEEEchhcccC--CceEEEEcC---------CCCEEEEEEEEecCC---------CCEEEEEecCCC----CCCceecCC
Confidence            48999999965  245666654         123455555555542         599999999763    456788864


Q ss_pred             C-CCCCCCCEEEEeccc
Q psy3170          82 A-HNVKSPTAIASGFGK   97 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG~   97 (525)
                      . ....+..+++.||+.
T Consensus       131 ~~~~~~G~~v~~~G~p~  147 (231)
T 3tjo_A          131 SSELRPGEFVVAIGSPF  147 (231)
T ss_dssp             GGGCCTTCEEEEEEEEE
T ss_pred             cCCCCCCCEEEEEECCC
Confidence            3 346688999999985

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=97.94  E-value=5.2e-05  Score=82.20  Aligned_cols=171  Identities=18%  Similarity=0.212  Sum_probs=92.0

Q ss_pred             EEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcccCCC
Q psy3170         283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSET  362 (525)
Q Consensus       283 ~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~~~~~  362 (525)
                      .+|||+|+||+|+||=. .    .-.|.+|.        .....   +++.|++|..      .|+++.||.+.+.   -
T Consensus        59 ~aTLI~pqYiVSvaHn~-g----y~~v~fG~--------~~n~Y---~iV~rnn~~~------~Dy~~pRL~K~VT---E  113 (1048)
T 1wxr_A           59 VATLINPQYIASVKHNG-G----YTNVSFGD--------GENRY---NIVDRNNAPS------LDFHAPRLDKLVT---E  113 (1048)
T ss_dssp             CCEEEETTEEEBCTTCC-S----CCEECCTT--------SCCCE---EEEECCBCSS------SSCBCCEESSCCC---S
T ss_pred             eEEEEcCcEEEEeeecC-C----CceEEeCC--------CcceE---EEEeeCCCCC------CCeeeeecccccc---c
Confidence            47899999999999932 1    12333432        11122   3377888754      4999999999886   4


Q ss_pred             ccceecCCCC--------CCCCCcEEEEEeeeccCCCCcc--------cccceEEEEEeeChhhhhcccCCCCCCcEEEE
Q psy3170         363 LKPACLNRAH--------NVKSPTAIASGFGKLNYFDTKE--------SLRLMKVVLDIINNDTCSKQETTLISSQLCAT  426 (525)
Q Consensus       363 v~picL~~~~--------~~~~~~~~~~Gwg~~~~~~~~~--------~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~  426 (525)
                      +.||.+....        .......+-+|=|.........        -..+.-..+...+         ......++..
T Consensus       114 vaP~~~t~~g~~~~~y~d~ery~~f~RvGsG~q~~~~~ng~~~~l~~aY~yltGGt~~~~~---------~~~~~~li~~  184 (1048)
T 1wxr_A          114 VAPTAVTAQGAVAGAYLDKERYPVFYRLGSGTQYIKDSNGQLTKMGGAYSWLTGGTVGSLS---------SYQNGEMIST  184 (1048)
T ss_dssp             SCCCCBCSSCSCTTGGGCTTTCCCEEEEECSCEEEECTTCCEEEEECTTSSCEEEEECCCE---------EETTTTEEEE
T ss_pred             ccceeeccccCccccccccccCceEEEECCcEEEEEcCCCceeEccccceEEecccccCcc---------ccCCceEEec
Confidence            6777775443        2334455666766542111000        0011111110000         0011122200


Q ss_pred             eC----------CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         427 VM----------AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       427 ~~----------~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      ..          .-....-.||||+||+..+....+|+|+|+.+.+..-+..  -..|.-+..  +|+.+++...
T Consensus       185 ~~g~~f~~~~~~PL~~~~~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~~g~~--~~~~~~~~~--~f~~~~~~~d  255 (1048)
T 1wxr_A          185 SSGLVFDYKLNGAMPIYGEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGR--GNNWAVIPL--DFIGQKFNED  255 (1048)
T ss_dssp             CTTCTTCHHHHCSSBCBCCTTCTTCEEEEEETTTTEEEEEEEEEEESSTTCS--CEEEEECCH--HHHHHHHHTT
T ss_pred             cCCcccccccCCcccCCCCCCCCCCeeeEEEcCCCeEEEEEEecccccCCcc--cceEEEeCH--HHhhhhhhcc
Confidence            00          0012245799999999988666699999999855331211  144555443  7887766543

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=97.93  E-value=1e-05  Score=72.63  Aligned_cols=23  Identities=39%  Similarity=0.497  Sum_probs=18.2

Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecC
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                      +|||||||+..     ..+++||.|++.
T Consensus       140 ~GDSGGPl~~~-----~g~~vGI~s~~~  162 (198)
T 2h5c_A          140 RGDSGGSWITS-----AGQAQGVMSGGN  162 (198)
T ss_dssp             TTCTTCEEECT-----TCBEEEEEEEEC
T ss_pred             CCcceeEEEee-----CCEEEEEEEeec
Confidence            79999999831     236999999874

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=97.89  E-value=9.5e-06  Score=75.32  Aligned_cols=74  Identities=15%  Similarity=-0.080  Sum_probs=51.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|+++.         ++.+.++-+.    |+     ..+|||||||+.++   +.+++++|+.
T Consensus        68 ~ILTnaHvv~~~--~~i~V~~~~---------g~~~~a~vv~----~d-----~~~DlAllkl~~~~---~~~~~~~l~~  124 (239)
T 1l1j_A           68 YILTNYHVVGGA--DNITVTMLD---------GSKYDAEYIG----GD-----EELDIAVIKIKASD---KKFPYLEFGD  124 (239)
T ss_dssp             EEEEEHHHHSSC--SSCEEECTT---------SCEEEBCCCE----EE-----TTTTEEEEEBCCSS---SCCCCCEECC
T ss_pred             EEEEChHHhCCC--CEEEEEECC---------CCEEEEEEEE----Ec-----CCCCEEEEEEcCCC---CCCceEEecC
Confidence            489999999653  467777762         2334443221    22     24799999999876   4678999985


Q ss_pred             C-CCCCCCCEEEEecccc
Q psy3170          82 A-HNVKSPTAIASGFGKL   98 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG~~   98 (525)
                      . ....+..+++.||+..
T Consensus       125 s~~~~~G~~v~~iG~p~g  142 (239)
T 1l1j_A          125 SDKVKIGEWAIAIGNPLG  142 (239)
T ss_dssp             GGGCCTTCEEEEEECTTS
T ss_pred             ccCCccccEEEEEECCCC
Confidence            4 3467889999999853

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.87  E-value=1.7e-05  Score=78.21  Aligned_cols=74  Identities=16%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      -|||||||+...  ..+.|.++.         ++.+.++.+..+|         .+|||||||+.|.   +.++|++|+.
T Consensus        65 ~IlT~aHvv~~~--~~i~V~~~~---------g~~~~a~~v~~d~---------~~DlAlLkl~~~~---~~~~~i~l~~  121 (348)
T 3qo6_A           65 HIVTNYHVIRGA--SDLRVTLAD---------QTTFDAKVVGFDQ---------DKDVAVLRIDAPK---NKLRPIPVGV  121 (348)
T ss_dssp             EEEECHHHHTTC--SEEEEECTT---------SCEEEEEEEEEEG---------GGTEEEEECCCCG---GGCCCCCBCC
T ss_pred             EEEECHHHhCCC--cEEEEEECC---------CCEEEEEEEEEcC---------cCCEEEEEEcCCC---CCceeEEecC
Confidence            379999999652  456666541         2345555454443         3599999999872   4678999975


Q ss_pred             C-CCCCCCCEEEEecccc
Q psy3170          82 A-HNVKSPTAIASGFGKL   98 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG~~   98 (525)
                      . ....+..+++.||+..
T Consensus       122 s~~~~~G~~v~~iG~p~g  139 (348)
T 3qo6_A          122 SADLLVGQKVFAIGNPFG  139 (348)
T ss_dssp             STTCCTTCEEEEEECGGG
T ss_pred             cccCCCCCEEEEEECCCC
Confidence            3 3467889999999864

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.77  E-value=5.6e-05  Score=73.95  Aligned_cols=73  Identities=21%  Similarity=0.106  Sum_probs=50.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..  ...+.|.++.         ++.+.++.+..||.         +|||||||+.+.    .+.++.|+.
T Consensus        58 ~ILTaaHvv~~--~~~i~V~~~~---------g~~~~a~~~~~d~~---------~DlAlL~l~~~~----~~~~~~l~~  113 (332)
T 3num_A           58 LIVTNAHVVTN--KHRVKVELKN---------GATYEAKIKDVDEK---------ADIALIKIDHQG----KLPVLLLGR  113 (332)
T ss_dssp             EEEECTTTCCT--TSEEEEEETT---------SCEEEEEEEEEETT---------TTEEEEEECCSS----CCCCCCBCC
T ss_pred             EEEEChHHcCC--CCEEEEEECC---------CCEEEEEEEEecCC---------CCeEEEEEcCCC----CCceeeecC
Confidence            37999999965  3456676642         34566777777764         499999999873    456778864


Q ss_pred             -CCCCCCCCEEEEecccc
Q psy3170          82 -AHNVKSPTAIASGFGKL   98 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG~~   98 (525)
                       .....+..+++.||+..
T Consensus       114 ~~~~~~G~~v~~~G~p~g  131 (332)
T 3num_A          114 SSELRPGEFVVAIGSPFS  131 (332)
T ss_dssp             TTSCCTTCEEEEECC---
T ss_pred             cccCCCCCEEEEEECCCC
Confidence             34466889999999863

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.73  E-value=5.5e-05  Score=73.76  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             ceeeeccCcccCC-------CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCce
Q psy3170           2 VNNHAAHCITSPL-------GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~~~-------~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v   74 (525)
                      .|||||||+....       ...+.|+++.         ++.+.++ ++   .|+     ..+|||||||+.+    ..+
T Consensus        43 ~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~---------g~~~~a~-vv---~~d-----~~~DlAllkl~~~----~~~  100 (324)
T 1y8t_A           43 LILTNNHVIAAAAKPPLGSPPPKTTVTFSD---------GRTAPFT-VV---GAD-----PTSDIAVVRVQGV----SGL  100 (324)
T ss_dssp             EEEEEHHHHTTCC--------CEEEEEETT---------CCEECEE-EE---ECC-----TTTTEEEEEECSC----CSC
T ss_pred             EEEEChHHcCCcccccccCCceEEEEEeCC---------CCEEEEE-EE---EeC-----CCCCEEEEEECCC----CCC
Confidence            4899999996542       1357777762         1233443 22   132     2479999999987    457


Q ss_pred             eeeecCCC-CCCCCCCEEEEecc
Q psy3170          75 KPACLNRA-HNVKSPTAIASGFG   96 (525)
Q Consensus        75 ~picL~~~-~~~~~~~~~v~GWG   96 (525)
                      +|++|+.. ....+..+++.||+
T Consensus       101 ~~~~l~~~~~~~~G~~v~~~G~p  123 (324)
T 1y8t_A          101 TPISLGSSSDLRVGQPVLAIGSP  123 (324)
T ss_dssp             CCCEECCSTTCCTTCEEEEEECG
T ss_pred             ceEEecCcccCCCCCEEEEEEcC
Confidence            79999754 44678899999994

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.73  E-value=0.00042  Score=71.41  Aligned_cols=147  Identities=18%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .-.-+|.+|++.+|||.+|.+.+  ...+.|.+-        .++.....+-+...|         ..||||||++.+-.
T Consensus        73 ~s~GSGfiI~dG~IlTN~HVV~~--a~~i~V~~~--------~dg~~~~A~vv~~D~---------~~DLAvLkv~~~~~  133 (539)
T 4fln_A           73 TSTGSAFMIGDGKLLTNAHCVEH--DTQVKVKRR--------GDDRKYVAKVLVRGV---------DCDIALLSVESEDF  133 (539)
T ss_dssp             EEEEEEEEEETTEEEECGGGGTT--EEEEEEECT--------TCCCCEEEEEEEEET---------TTTEEEEEECCSSS
T ss_pred             ceEEEEEEEECCEEEEChHHcCC--CCeEEEEEc--------cCCEEEEEEEEEECC---------CCCEEEEEEeCCcC
Confidence            45689999999999999999865  233333220        011112222222222         25999999976432


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcCC
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGD  438 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~gD  438 (525)
                       ...+.|+.+... ...+..+.+.|+.....     ...+....+.-+..    ..+..-........   -+...-+|.
T Consensus       134 -~~~~~pl~~g~~-~~vGd~V~aiG~P~g~~-----~~tvT~GIVSa~~r----~~~~~~~~~~~~IQ---tDAaInpGn  199 (539)
T 4fln_A          134 -WKGAEPLRLGHL-PRLQDSVTVVGYPLGGD-----TISVTKGVVSRIEV----TSYAHGSSDLLGIQ---IDAAINPGN  199 (539)
T ss_dssp             -STTCCCCCBCCC-CCTTCEEEEEECCSSSC-----CCEEEEEEEEEEEE----EECTTSCCEEEEEE---ESSCCCTTT
T ss_pred             -CcCCceeecCCc-CcCCCeEEEEEcCCCCC-----CCcEEeEEECcccc----cccCCCCcceeEEE---EEeEecCCC
Confidence             223445555432 24577788888743211     11111222221110    01110001111111   123456799


Q ss_pred             CCCcceeecCCCceeEEEEEEeecC
Q psy3170         439 SGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       439 sGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                      |||||+-.     +..++||.+...
T Consensus       200 SGGPLvn~-----~GeVIGIntai~  219 (539)
T 4fln_A          200 SGGPAFND-----QGECIGVAFQVY  219 (539)
T ss_dssp             TTSEEECS-----SSCEEEEECCCC
T ss_pred             ccchhccC-----CCcEEEEEEEEe
Confidence            99999742     346999987653

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=97.68  E-value=5.7e-05  Score=70.07  Aligned_cols=73  Identities=16%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|.++         .++.+.++.+..||.         +|||||||+.+.    .+.+++|+.
T Consensus        65 ~IlTaaHvv~~~--~~~~V~~~---------~g~~~~a~vv~~d~~---------~DlAll~l~~~~----~~~~~~l~~  120 (237)
T 3lgi_A           65 YIITNKHVINDA--DQIIVALQ---------DGRVFEALLVGSDSL---------TDLAVLKINATG----GLPTIPINA  120 (237)
T ss_dssp             EEEEEHHHHTTC--SEEEEECT---------TSCEEEEEEEEEETT---------TTEEEEECCCSS----CCCCCCCCT
T ss_pred             EEEEeeeecCCC--CEEEEEeC---------CCCEEEEEEEEEcCC---------CCEEEEEecCCC----CCceEeccC
Confidence            489999999653  44556543         234456665655553         499999999875    356788874


Q ss_pred             -CCCCCCCCEEEEecccc
Q psy3170          82 -AHNVKSPTAIASGFGKL   98 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG~~   98 (525)
                       .....+..+++.||+..
T Consensus       121 ~~~~~~G~~v~~~G~p~~  138 (237)
T 3lgi_A          121 RRVPHIGDVVLAIGNPYN  138 (237)
T ss_dssp             TCCCCTTBEEEEEECGGG
T ss_pred             cccCCCCCEEEEEECCCC
Confidence             34466888999999853

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=97.62  E-value=0.00014  Score=64.27  Aligned_cols=161  Identities=15%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             eeEeEEEEE---eCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         279 KWFCGGSLI---SPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       279 ~~~C~GtLI---s~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      .++|.|+.+   ..+++|||+||+....   ..+..... .......  ...+.       |..  .....|+||+++..
T Consensus        26 ~h~G~g~~V~~~G~~~LlTA~Hv~~~~~---~~~~~~k~-g~~ip~~--~~~~~-------~~~--~d~~~D~all~vp~   90 (191)
T 1zyo_A           26 TTIGFGCRTKIDGEDCLLTAHHVWCNSM---RPTGLAKA-GKQVSVE--DWEIS-------MSS--SDKMLDFAIVRVPT   90 (191)
T ss_dssp             EEEEEEEEEEC--CEEEEECHHHHTSSS---CCCEEEET-TEEEECC--SCEEE-------EEE--CCTTTCEEEEECCH
T ss_pred             eEEEEEEEEEECCCcEEEEChhhCcCCc---ceeeecCC-CCEEEcc--cceee-------Ecc--CCCCCcEEEEEcCC
Confidence            799999999   5679999999985421   11111111 0000000  00111       111  11237999999986


Q ss_pred             CcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         356 PVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      ...-.-.++++-+-..  ..+..+.++|+.....        +... ..+     |..    ....++..-    ...+.
T Consensus        91 ~~~s~lg~~~a~~~~~--~~~~~vt~yg~~~~~~--------~~s~-~g~-----~~~----~~~~~~~~~----~~~T~  146 (191)
T 1zyo_A           91 HVWSKLGVKSTPLVCP--SSKDVITCYGGSSSDC--------LMSG-VGS-----SST----SEFTWKLTH----TCPTA  146 (191)
T ss_dssp             HHHHHHTCCCCCBCCC--CSCEEEEEEEESSTTS--------EEEE-EEE-----EEE----CSSTTEEEE----CCCCC
T ss_pred             ChhhhcCcceeEeecC--CCCccEEEEeecCCCC--------Eeec-ccc-----eee----ccCCcEEEE----EcCCC
Confidence            5431112333333211  1355667777643111        1110 000     000    001122111    22346


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      .|+||+|++..     + .++||..-+..-   +..-.-++++.+.+||.+.
T Consensus       147 ~G~SGsP~~ng-----~-~IVGvh~G~~~~---~~~N~a~n~~~~~~~~~~~  189 (191)
T 1zyo_A          147 AGWSGTPLYSS-----R-GVVGMHVGFEEI---GKLNRGVNMFYVANYLLRS  189 (191)
T ss_dssp             TTCTTCEEECS-----S-CEEEEEEEEEET---TTEEEEECHHHHHHHTCCC
T ss_pred             CCCCCCcEEcC-----C-eEEEEEeCcccC---CceeeeeehHHHhhhhhhc
Confidence            89999999862     2 478998865331   2234578888889997654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.31  E-value=0.00021  Score=69.54  Aligned_cols=73  Identities=19%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|+++.         ++.+.++-+.    |+     ..+|||||||+.+.    .+++++|+.
T Consensus        59 ~IlT~aHvv~~~--~~i~V~~~~---------g~~~~a~v~~----~d-----~~~DlAllkl~~~~----~~~~~~l~~  114 (325)
T 1lcy_A           59 LIVTNAHVVADR--RRVRVRLLS---------GDTYEAVVTA----VD-----PVADIATLRIQTKE----PLPTLPLGR  114 (325)
T ss_dssp             EEEECHHHHTTC--SEEEEECTT---------SCEEEEEEEE----EE-----TTTTEEEEECCCSS----CCCCCCBCC
T ss_pred             EEEECHHHcCCC--CEEEEEeCC---------CCEEEEEEEE----EC-----CCCCEEEEEEcCCC----CCceEEecc
Confidence            389999999653  456776652         2334443221    22     24699999999763    467888875


Q ss_pred             C-CCCCCCCEEEEecccc
Q psy3170          82 A-HNVKSPTAIASGFGKL   98 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG~~   98 (525)
                      . ....+..+++.||+..
T Consensus       115 ~~~~~~G~~v~~~G~p~~  132 (325)
T 1lcy_A          115 SADVRQGEFVVAMGSPFA  132 (325)
T ss_dssp             GGGCCTTCEEEECCCTTS
T ss_pred             cccCCCCCEEEEEECCCC
Confidence            3 4466888999999864

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=97.30  E-value=0.00042  Score=64.31  Aligned_cols=71  Identities=18%  Similarity=0.136  Sum_probs=46.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|.+.         .++.+.++.+..+|.         +|||||||+.+.    .+.++.|..
T Consensus        76 ~IlTnaHvv~~a--~~i~V~~~---------dg~~~~a~vv~~d~~---------~DlAlLkv~~~~----~~~~~~l~~  131 (245)
T 3sti_A           76 YVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDDQ---------SDIALLQIQNPS----KLTQIAIAD  131 (245)
T ss_dssp             EEEECGGGC------CEEEECT---------TSCEEEEEEEEEETT---------TTEEEEEESSCC----SCCCCCBCC
T ss_pred             EEEEcHHHhCCC--CEEEEEEC---------CCCEEEEEEEEecCC---------CCEEEEEeccCC----CCceeeecC
Confidence            489999999653  45666653         134456665555543         599999998653    356777764


Q ss_pred             -CCCCCCCCEEEEecc
Q psy3170          82 -AHNVKSPTAIASGFG   96 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG   96 (525)
                       .....+..+++.||.
T Consensus       132 s~~~~~G~~v~aiG~P  147 (245)
T 3sti_A          132 SDKLRVGDFAVAVGNP  147 (245)
T ss_dssp             GGGCCTTBEEEEEECG
T ss_pred             cCCCCCCCEEEEEECC
Confidence             334678889999975

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.21  E-value=0.00043  Score=67.16  Aligned_cols=71  Identities=15%  Similarity=0.076  Sum_probs=47.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.|.++.         ++.+.++-+.    |+     ..+||||||++.+    ..+.+++|+.
T Consensus        54 ~IlT~aHvv~~~--~~i~V~~~~---------g~~~~a~v~~----~d-----~~~DlAllk~~~~----~~~~~~~l~~  109 (318)
T 1te0_A           54 YIITNKHVINDA--DQIIVALQD---------GRVFEALLVG----SD-----SLTDLAVLIIKAT----GGLPTIPINA  109 (318)
T ss_dssp             EEEEEHHHHTTC--SEEEEECTT---------SCEEEEEEEE----EE-----TTTTEEEEECCCS----SCCCCCCCCT
T ss_pred             EEEECHHHcCCC--CEEEEEeCC---------CCEEEEEEEE----eC-----CCceEEEEEEeCC----CCCceEEeeC
Confidence            489999999653  346666542         2334443222    22     2469999999987    3567888875


Q ss_pred             C-CCCCCCCEEEEecc
Q psy3170          82 A-HNVKSPTAIASGFG   96 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG   96 (525)
                      . ....+..+++.||.
T Consensus       110 ~~~~~~G~~v~~~G~p  125 (318)
T 1te0_A          110 RRVPHIGDVVLAIGNP  125 (318)
T ss_dssp             TCCCCTTCEEEEECCC
T ss_pred             ccCCCCCCEEEEEEcC
Confidence            3 45678899999964

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=96.51  E-value=0.0022  Score=62.81  Aligned_cols=72  Identities=18%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+|||+...  ..+.|.+.         .++.+.++.+..||.         +||||||++.+-    .+.++.|..
T Consensus        76 ~IlTnaHVv~~~--~~i~V~~~---------dg~~~~a~vv~~d~~---------~DlAlLkv~~~~----~~~~~~l~~  131 (345)
T 3stj_A           76 YVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDDQ---------SDIALLQIQNPS----KLTQIAIAD  131 (345)
T ss_dssp             EEEECHHHHTTE--EEEEEECT---------TSCEEEEEEEEEETT---------TTEEEEEESSCC----SCCCCCBCC
T ss_pred             EEEEChHHhCCC--CEEEEEeC---------CCcEEEEEEEEEcCC---------CCEEEEEEcccC----CCceEeecC
Confidence            379999999652  34455443         235667777777764         499999997653    345777764


Q ss_pred             -CCCCCCCCEEEEeccc
Q psy3170          82 -AHNVKSPTAIASGFGK   97 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG~   97 (525)
                       .....+..+++.||..
T Consensus       132 s~~~~~G~~V~aiG~p~  148 (345)
T 3stj_A          132 SDKLRVGDFAVAVGNPF  148 (345)
T ss_dssp             GGGCCTTBEEEEEECGG
T ss_pred             cccCCCCCEEEEEECCC
Confidence             3346688899999953

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=96.15  E-value=0.011  Score=59.81  Aligned_cols=72  Identities=18%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+|||+...  ..+.|.+.         .++.+.++-+..||.         +||||||++.+-    .+.++.|..
T Consensus        76 ~IlTn~Hvv~~a--~~i~V~~~---------dg~~~~a~vv~~d~~---------~DlAllkv~~~~----~l~~~~l~~  131 (436)
T 4a8c_A           76 YVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDDQ---------SDIALLQIQNPS----KLTQIAIAD  131 (436)
T ss_pred             EEEECHHHhCCC--CEEEEEeC---------CCCEEEEEEEEEcCC---------CCEEEEEecCCC----CCceEeccC
Confidence            479999999763  45666653         234566776766664         499999997653    456788863


Q ss_pred             -CCCCCCCCEEEEeccc
Q psy3170          82 -AHNVKSPTAIASGFGK   97 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG~   97 (525)
                       .....+..+.+.||..
T Consensus       132 s~~~~~G~~v~aiG~P~  148 (436)
T 4a8c_A          132 SDKLRVGDFAVAVGNPF  148 (436)
T ss_pred             cccCCCCCEEEEEEcCC
Confidence             4456788899999953

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=95.84  E-value=0.012  Score=52.07  Aligned_cols=42  Identities=14%  Similarity=0.114  Sum_probs=29.3

Q ss_pred             cCceEEEEeCCCccCCCceee-----eecC-CCCCCCCCCEEEEeccc
Q psy3170          56 YHDIALLKIAPPVEFSETLKP-----ACLN-RAHNVKSPTAIASGFGK   97 (525)
Q Consensus        56 ~nDIALl~L~~~v~~~~~v~p-----icL~-~~~~~~~~~~~v~GWG~   97 (525)
                      .+|||||||+.++.+.+.+..     +.+. ......+..+...||..
T Consensus        60 ~~DiAlikl~~~~~~~~~v~~~~g~~~~i~~~~~~~~G~~v~~~G~~~  107 (187)
T 1hpg_A           60 TNDYGIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTT  107 (187)
T ss_dssp             BSCEEEEEECSSCCCCSEEECSSSCEEECCEECCCCTTCEEEEEETTT
T ss_pred             CCCEEEEEeCCCCCcCceEEecCCceeeeccccCCCCCCEEEEEEcCC
Confidence            369999999988766554432     4443 33456788888999974

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=95.65  E-value=0.0089  Score=60.67  Aligned_cols=72  Identities=21%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||+|||+...  ..+.|.+.         .++.+.++-+..||.         +||||||++.     ..+.++.|..
T Consensus        90 ~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vv~~d~~---------~DlAlLkv~~-----~~l~~~~l~~  144 (451)
T 3pv2_A           90 VIITNDHVIRNA--SLITVTLQ---------DGRRLKARLIGGDSE---------TDLAVLKIDA-----KNLKSLVIGD  144 (451)
T ss_dssp             EEEECHHHHTTE--EEEEEECT---------TSCEEECEEEEEETT---------TTEEEEECCC-----SSCCCCCBCC
T ss_pred             EEEEChHHhCCC--CEEEEEEc---------CCCEEEEEEEecCcC---------CcEEEEEEcC-----cCCceeEecC
Confidence            489999999653  34555543         234567777777764         3999999964     3456777764


Q ss_pred             -CCCCCCCCEEEEe--cccc
Q psy3170          82 -AHNVKSPTAIASG--FGKL   98 (525)
Q Consensus        82 -~~~~~~~~~~v~G--WG~~   98 (525)
                       .....+..+++.|  ||..
T Consensus       145 s~~~~~G~~V~aiG~P~G~~  164 (451)
T 3pv2_A          145 SDKLEVGDFVVAIGNPFGLN  164 (451)
T ss_dssp             GGGCCTTCEEEEEECCCCC-
T ss_pred             cccCCCCCEEEEEECCCCcc
Confidence             3346788999999  6753

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=95.55  E-value=0.012  Score=52.15  Aligned_cols=41  Identities=10%  Similarity=0.100  Sum_probs=28.3

Q ss_pred             cCceEEEEeCCCccCCCcee-----eeecCC-CCCCCCCCEEEEecccc
Q psy3170          56 YHDIALLKIAPPVEFSETLK-----PACLNR-AHNVKSPTAIASGFGKL   98 (525)
Q Consensus        56 ~nDIALl~L~~~v~~~~~v~-----picL~~-~~~~~~~~~~v~GWG~~   98 (525)
                      .+|||||||+.+..+++.|+     +++|+. .....+..  |..||.+
T Consensus        54 ~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s~~~~vG~~--v~~~G~~  100 (189)
T 2ea3_A           54 GNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHTAAPVGSA--VCRSGST  100 (189)
T ss_dssp             BSCEEEEEECTTCEEEEEEECSSSCEEECCBCCCCCTTCE--EEEEETT
T ss_pred             CCCEEEEEECCCCccccceEecCCceeecCCCcCCCCCCE--EEEEEeC
Confidence            36999999999887777776     677764 23344553  5567754

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=93.59  E-value=0.18  Score=43.17  Aligned_cols=68  Identities=12%  Similarity=0.029  Sum_probs=36.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+|||+...  ..+.|.++          ++.+..+ ++..    +     ..||||||++.+.   ..+.|+.|..
T Consensus        31 ~IlTn~HVV~~~--~~i~V~~d----------g~~~~a~-vv~d----~-----~~DlAlLkv~~~~---~~~~~l~l~~   85 (163)
T 2w5e_A           31 DIVTAAHVVGNN--TFVNVCYE----------GLMYEAK-VRYM----P-----EKDIAFITCPGDL---HPTARLKLSK   85 (163)
T ss_dssp             EEEEEHHHHTTC--SEEEEEET----------TEEEEEE-EEEC----C-----SSSEEEEECCTTC---CCSCCCCBCS
T ss_pred             EEEecHHHhCCC--ceEEEEEC----------CEEEEEE-EEEE----C-----CCCEEEEEecCCC---CCcceEEcCC
Confidence            479999999653  44566552          2233333 2222    2     2599999998743   1223444443


Q ss_pred             CCCCCCCCEEEEecc
Q psy3170          82 AHNVKSPTAIASGFG   96 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG   96 (525)
                      ..  ......+.|+.
T Consensus        86 ~~--~~~~v~~~G~p   98 (163)
T 2w5e_A           86 NP--DYSCVTVMAYV   98 (163)
T ss_dssp             SC--CTTEEEEEEEE
T ss_pred             CC--CCCEEEEEEeC
Confidence            21  12445566653

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=93.11  E-value=0.056  Score=47.51  Aligned_cols=36  Identities=6%  Similarity=0.135  Sum_probs=23.3

Q ss_pred             cCceEEEEeCCCccCCCcee-----eeecCC-CCCCCCCC-EE
Q psy3170          56 YHDIALLKIAPPVEFSETLK-----PACLNR-AHNVKSPT-AI   91 (525)
Q Consensus        56 ~nDIALl~L~~~v~~~~~v~-----picL~~-~~~~~~~~-~~   91 (525)
                      .+|+|||||+.+....+.|+     ++.+.. .....+.. |.
T Consensus        57 ~~D~Alikl~~~~~~~~~v~~~~g~~~~i~~~~~~~vG~~vc~   99 (186)
T 2pfe_A           57 GRDMGWVRITSADTVTPLVNRYNGGTVTVTGSQEAATGSSVCR   99 (186)
T ss_dssp             BSCEEEEEECTTSEEEEEEECSSSCEEECCBCCCCCTTCEEEE
T ss_pred             CCCEEEEEeCCCcccccceeccCCceEecCCCCCCCCCCeEEE
Confidence            36999999998876666665     455542 33355664 44

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=92.54  E-value=0.15  Score=51.55  Aligned_cols=71  Identities=17%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+|||+...  ..+.|.+.         .+..+..+-+..+|         ..||||||++.+-    .+.++.|..
T Consensus        99 ~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vv~~d~---------~~DlAvlkv~~~~----~~~~~~l~~  154 (448)
T 1ky9_A           99 YVVTNNHVVDNA--TVIKVQLS---------DGRKFDAKMVGKDP---------RSDIALIQIQNPK----NLTAIKMAD  154 (448)
T ss_dssp             EEEEEHHHHTTE--EEEEEEET---------TSCEEEEEEEEEET---------TTTEEEEEESSCC----SCCCCCBCC
T ss_pred             EEEEChHHhCCC--CEEEEEEC---------CCCEEEEEEEEEcC---------CCCEEEEEecCCC----CCceEEecc
Confidence            489999999653  34666654         12344554343333         3599999998642    345666654


Q ss_pred             C-CCCCCCCEEEEecc
Q psy3170          82 A-HNVKSPTAIASGFG   96 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG   96 (525)
                      . ....|....+.||.
T Consensus       155 s~~~~~G~~V~aiG~P  170 (448)
T 1ky9_A          155 SDALRVGDYTVAIGNP  170 (448)
T ss_dssp             GGGCCTTCEEEEEECT
T ss_pred             cccCCCCCEEEEEECC
Confidence            3 34668888999974

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=92.37  E-value=0.55  Score=50.47  Aligned_cols=52  Identities=19%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .-.||||+||+..+....+|+|+|+.+.+.....  .--.|+-+.  .+|+.+++.
T Consensus       213 g~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~~~g--~~n~~~i~~--~~f~~~~~~  264 (1011)
T 3syj_A          213 GSKGDSGSPMFIYDAEKQKWLINGILREGNPFEG--KENGFQLVR--KSYFDEIFE  264 (1011)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEECC----------EEEEECC--HHHHHHHHH
T ss_pred             CCCCCCCCcceeeEcCCCeEEEEEEeeccccccC--cccceEEec--hHHhhhhhh
Confidence            4579999999999887779999999987643321  112344222  467766664

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=91.23  E-value=0.21  Score=44.29  Aligned_cols=19  Identities=11%  Similarity=0.181  Sum_probs=13.7

Q ss_pred             CceEEEEeCCCccCCCcee
Q psy3170          57 HDIALLKIAPPVEFSETLK   75 (525)
Q Consensus        57 nDIALl~L~~~v~~~~~v~   75 (525)
                      +|+||||++.+....+.|.
T Consensus        62 ~D~Avi~i~~~~~~~~~v~   80 (198)
T 2h5c_A           62 NDRAWVSLTSAQTLLPRVA   80 (198)
T ss_dssp             SCEEEEEECTTSEEEEEEE
T ss_pred             CCEEEEEeCCCCccCceEe
Confidence            5999999998765444443

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=90.70  E-value=2.7  Score=37.76  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             EEeCCEEEecCCCCCCCCCCceEEEE--EEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcccCCCc
Q psy3170         286 LISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL  363 (525)
Q Consensus       286 LIs~~~VLTAAhCv~~~~~~~~~v~~--g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~~~~~v  363 (525)
                      |.-..||+|.+|-+... ...+.|+.  |.+ .....        .+.-+||-       ...||.||+|.++++  +.-
T Consensus        35 igyG~~iItn~HLf~rn-ng~L~I~s~hG~f-~v~nt--------~~lki~~i-------~g~DiiiIrmPkDfp--Pf~   95 (241)
T 3mmg_A           35 IGFGPYIIANQHLFRRN-NGELTIKTMHGEF-AVANS--------TQLQMKPV-------EGRDIIVIKMAKDFP--PFP   95 (241)
T ss_dssp             EEETTEEEECGGGGSST-TCEEEEEETTEEE-EEEEG--------GGSCEEEC-------TBSSCEEEECCTTSC--CCC
T ss_pred             EeECCEEEEChhhcccC-CCeEEEEECCceE-EccCC--------CceeeEEe-------CCccEEEEeCCCCCC--Ccc
Confidence            55688999999988653 23454443  333 11100        01123332       225999999977653  332


Q ss_pred             cceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcCCCCCcc
Q psy3170         364 KPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPL  443 (525)
Q Consensus       364 ~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPL  443 (525)
                      +-+++  ..+..+..+.++|--.....   ......+.. .+.+..          ...|=.    ....+=.|+-|.||
T Consensus        96 ~kl~F--R~P~~~E~V~lVg~~fq~k~---~~s~vSesS-~i~p~~----------~~~fWk----HwIsT~~G~CGlPl  155 (241)
T 3mmg_A           96 QKLKF--RQPTIKDRVCMVSTNFQQKS---VSSLVSESS-HIVHKE----------DTSFWQ----HWITTKDGQAGSPL  155 (241)
T ss_dssp             SCCCB--CCCCTTCCEEEEEEEECSSC---EEEEEEEEE-CCEECT----------TSSEEE----ECBCCCTTCTTCEE
T ss_pred             hhccc--CCCCCCCeEEEEEeecccCC---ccEEECCcc-eeEEcC----------CCCEEE----EEcCCCCCcCCCeE
Confidence            33332  23344556666665332211   111111110 000100          111111    12244568999999


Q ss_pred             eeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCC
Q psy3170         444 QTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSY  479 (525)
Q Consensus       444 ~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~  479 (525)
                      |...++    .++||.|.+..-   +.-..|+.+..
T Consensus       156 Vs~~Dg----~IVGiHsl~~~~---~~~N~F~~f~~  184 (241)
T 3mmg_A          156 VSIIDG----NILGIHSLTHTT---NGSNYFVEFPE  184 (241)
T ss_dssp             EETTTC----CEEEEEEEEETT---TCCEEEEECCT
T ss_pred             EEcCCC----cEEEEEecccCC---CCcEEEEcCCH
Confidence            985543    699999987532   23477887764

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=89.39  E-value=0.63  Score=40.79  Aligned_cols=36  Identities=8%  Similarity=0.092  Sum_probs=22.1

Q ss_pred             cCceEEEEeCCCccCCCceee------eecCC-CCCCCCCCEE
Q psy3170          56 YHDIALLKIAPPVEFSETLKP------ACLNR-AHNVKSPTAI   91 (525)
Q Consensus        56 ~nDIALl~L~~~v~~~~~v~p------icL~~-~~~~~~~~~~   91 (525)
                      .+|+|||||+.+....+.|++      +.|+. .....+....
T Consensus        59 ~~DiAlikl~~~~~~~~~v~~~g~~~~~~l~~~~~~~vG~~v~  101 (188)
T 2oua_A           59 GNDAAFVRGTSNFTLTNLVSRYNSGGYATVSGSSTAPIGSQVC  101 (188)
T ss_dssp             BSCEEEEEEEESCEEEEEEECGGGCSEEECCBCCCCCTTCEEE
T ss_pred             CCCEEEEEeCCCCccccceeecCCcceEeccCccCCCCCCeEE
Confidence            369999999987655555543      44543 3335566433

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=87.31  E-value=0.25  Score=38.01  Aligned_cols=63  Identities=17%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             ccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhhcccCCccccc----ccccceeEee
Q psy3170         106 YSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAP----ALVGGVRYVR  181 (525)
Q Consensus       106 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~l~~~~----~~~g~v~~~~  181 (525)
                      .+..|+.+.+++++...|...+..    .+...++|++..     ....|..++    ++|+.+..    .+.|.+++..
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~----~i~~~~iCa~~~-----~~~~C~GDS----GGPL~~~~~~~~~l~GIvS~g~   69 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGT----KIKDAMICAGAS-----GVSSCMGDS----GGPLVCKKNGAWTLVGIVSWGS   69 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGG----GCCTTEEEEECS-----SCBCCTTCT----TCEEEEEETTEEEEEEEEEECC
T ss_pred             cCccceEEEEEECCHHHhhHHhcC----CCCCceEeecCC-----CCCCCcCCC----CCcEEEEeCCeEEEEEEEEeCC
Confidence            456899999999999999776532    356678888721     235788776    67776654    4567777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	1e-40
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	1e-11
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	1e-38
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	4e-38
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	1e-11
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	8e-38
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	4e-11
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	1e-37
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-37
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	6e-12
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	0.002
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	2e-37
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	7e-12
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	3e-37
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	4e-37
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	4e-37
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	5e-37
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	1e-12
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	5e-04
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	7e-37
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	8e-37
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	2e-35
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	5e-35
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	5e-34
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	0.001
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	7e-34
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	2e-33
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	1e-10
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	4e-33
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	8e-12
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	5e-33
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	2e-11
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	7e-33
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	6e-08
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	5e-05
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	9e-33
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	6e-12
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	1e-32
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	2e-32
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	0.001
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	6e-32
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	7e-12
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	6e-32
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	2e-11
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	7e-32
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	2e-09
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	9e-32
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	6e-12
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	9e-32
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	4e-31
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	6e-12
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	2e-30
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	1e-08
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	3e-30
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	9e-13
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	3e-30
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	3e-12
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	4e-30
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	4e-30
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	4e-12
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	8e-30
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	8e-09
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	3e-29
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	1e-11
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	4e-29
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	5e-12
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	2e-28
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	2e-10
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	3e-28
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	6e-28
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	6e-28
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	4e-12
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	3e-27
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	5e-27
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	1e-11
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	6e-27
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	0.001
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	8e-27
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	6e-12
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	4e-26
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	5e-11
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	6e-26
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	2e-11
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	2e-25
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	4e-11
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	4e-25
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	3e-11
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	4e-24
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	3e-12
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	5e-24
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	8e-24
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	9e-09
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	1e-23
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	2e-11
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	1e-23
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	3e-11
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	3e-23
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	4e-23
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	6e-11
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	4e-20
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	6e-11
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	6e-13
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	2e-11
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	2e-04
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	7e-07
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	0.002

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  138 bits (348), Expect = 1e-38
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 13/212 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             FCGGSLI+  +V++AAHC  S +          + +      +      + I HPN+ 
Sbjct: 22  YHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE----GNEQFVNAAKIIKHPNFD 77

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
            E  +  +DI L+K++ PV+ +  +    L  +        + SG+G        E   L
Sbjct: 78  RE--TYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLL 135

Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
             +   ++    C    + +I  + +C   + GGKD CQGDSGGP+      +C   + G
Sbjct: 136 QCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQGDSGGPV------VCNGELQG 189

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW 489
           I S+G  C   + P +YT+V  YV WI  T+ 
Sbjct: 190 IVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  137 bits (344), Expect = 4e-38
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 14/211 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             FCGGSL++ N+V++AAHC  S +          +T      ++      + I HPNY+
Sbjct: 22  YHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVT----EGSEQFISSSRVIRHPNYS 77

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
           +   +  +DI L+K++ P   +  ++P  L  +          SG+G         + +L
Sbjct: 78  S--YNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADSN-KL 134

Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
             + + I++   C+     +I ++  CA  + GGKD+CQGDSGGP+      +C   + G
Sbjct: 135 QCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQG 188

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + S+G  C     P +Y +V  +  W+  T+
Sbjct: 189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
           I+GG   K    PHQ          ++     FCGGSL++ N+V++AAHC  S +   + 
Sbjct: 1   IVGGYECKAYSQPHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKSRVEVRLG 51

Query: 252 KAPLRT 257
           +  ++ 
Sbjct: 52  EHNIKV 57

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (343), Expect = 8e-38
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 12/212 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           +  CGG L+   +V+TAAHC      +   VR G  +  S    +   +V Q+I HP Y 
Sbjct: 23  RLICGGVLVGDRWVLTAAHCKK----QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYN 78

Query: 339 TEGT-SQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
                   HDI L+++       + +KP  L           I SG+G +          
Sbjct: 79  NSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNT 138

Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
           L    + I + + C +     I+  +     + G DTCQGDSGGPL      +C   + G
Sbjct: 139 LNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPL------VCDGMLQG 192

Query: 458 ITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
           ITS+G   CG    P +YT++  Y  WI  T+
Sbjct: 193 ITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 4e-11
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           I+ G        P QA +         +  +  CGG L+   +V+TAAHC 
Sbjct: 1   ILEGRECIPHSQPWQAAL--------FQGERLICGGVLVGDRWVLTAAHCK 43

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (344), Expect = 1e-37
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 10/220 (4%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGGSL+S ++V+TAAHC           R         S       V   + H  Y 
Sbjct: 23  AHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYL 82

Query: 339 TEGTSQY----HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN-YFDTK 393
                      +DIAL+ ++ P+  +E ++P CL  A        I +  G  N  +  +
Sbjct: 83  PFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ 142

Query: 394 ESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMP 448
           ++  L +  + II+ND C+  +     +     CA    GG D CQGDSGGP   +  + 
Sbjct: 143 QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSIS 202

Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
               + + GI S+G  C  A  P +YT+VS +  WI   +
Sbjct: 203 RTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  135 bits (341), Expect = 2e-37
 Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-LHPNY 337
           +  CG SL+S +++++AAHC+     +P   +  L   ++ ++T           +  N 
Sbjct: 23  QQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINP 82

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKES 395
                 + +DIA++ +   V +++ ++P CL   + V  P      +G+G L Y  +   
Sbjct: 83  HYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTAD 142

Query: 396 LRLMKVVLDIINNDTC--SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
             L +  + +++N+ C     E  +  + +CA   AGG D+CQGDSGGPL  +  +   +
Sbjct: 143 -VLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDSGGPL--MCQENNRW 199

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + G+TS+G QC   N P +Y RV  +  WI   +
Sbjct: 200 LLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFL 234

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 6e-12
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I+GGS ++ G +P    + F        D +  CG SL+S +++++AAHC+  
Sbjct: 1   IVGGSDSREGAWPWVVALYF--------DDQQVCGASLVSRDWLVSAAHCVYG 45

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-LHPNYTTEGTSQYHDIALLKI 64
           AAHC+     +P   +  L   ++ ++T           +  N       + +DIA++ +
Sbjct: 39  AAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHL 98

Query: 65  APPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKI 109
              V +++ ++P CL   + V  P  I S  G          + +
Sbjct: 99  EMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADV 143

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score =  135 bits (340), Expect = 2e-37
 Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 11/215 (5%)

Query: 276 KDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP 335
           ++ + FCGG+++S  Y++TAAHC+         V      +       +   V+      
Sbjct: 21  EENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF 80

Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKES 395
              T       DIA+L++  P+ F   + PA L  A        + SG+G          
Sbjct: 81  TKET----YDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYP 136

Query: 396 LRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
             L  +   +++   C       I+ +  C   + GGKD+CQGDSGGP+      +C   
Sbjct: 137 DELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV------VCNGQ 190

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW 489
           + G+ S+G  C   N P +YT+V  YV WI +T+ 
Sbjct: 191 LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 63.2 bits (152), Expect = 7e-12
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           I+GG   K GE P QA +         ++ + FCGG+++S  Y++TAAHC+
Sbjct: 1   IVGGYNCKDGEVPWQALLIN-------EENEGFCGGTILSEFYILTAAHCL 44

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  135 bits (340), Expect = 3e-37
 Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 13/218 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKP-----RYVRFGLITKLSYSVTDNIHRVMQNIL 333
           +  CGG L+  N+V+TAAHC              +           S +        ++L
Sbjct: 23  EHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLL 82

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTK 393
                  G     D+ LL+++ P + ++ +KP  L           +ASG+G +     +
Sbjct: 83  MLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQ 142

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           +   L  V + ++ N+ C+K     +    LCA  M GGKDTC+ DSGGPL      +C 
Sbjct: 143 KPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPL------ICD 196

Query: 453 YNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW 489
             + G TSYG   CG    PAIYT +  +  WI  T+ 
Sbjct: 197 GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  135 bits (339), Expect = 4e-37
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 6/209 (2%)

Query: 279 KWFCGGSLISPNYVMTAAHCIT-SPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
             FCG S+ + NY +TA HC+       P  ++             +   +  + +  + 
Sbjct: 27  FHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHE 86

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
             +     +DI+LLK++  + F++ + P  L    +  +   I +G+G  +         
Sbjct: 87  NFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSE-GGNTPDV 145

Query: 398 LMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L KV + +++++ C        ++ S +CA V  GGKD+CQGDSGGPL     D     +
Sbjct: 146 LQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPL--AASDTGSTYL 203

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
            GI S+G  C     P +YT VSY+V WI
Sbjct: 204 AGIVSWGYGCARPGYPGVYTEVSYHVDWI 232

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 4e-37
 Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 6/209 (2%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           +  CGGS+I   +++TAAHC    +  P+ +R          + ++        +  +  
Sbjct: 26  RHLCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQ 84

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY-FDTKESLR 397
            +     +DIALLK+   V ++++ +P CL    +           G        K    
Sbjct: 85  YKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144

Query: 398 LMKVVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L K  + ++ N+ C K+          +CA    GGKD C+GDSGGPL        ++++
Sbjct: 145 LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPL--SCKHNEVWHL 202

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +GITS+G  C     P +YT V  YV WI
Sbjct: 203 VGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 5e-37
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN 336
            V  FCGGS+++  +++TAAHC+ +       V  G         T+    V++ I H N
Sbjct: 21  KVDAFCGGSIVNEKWIVTAAHCVETG--VKITVVAGEHNIEETEHTEQKRNVIRIIPHHN 78

Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFG---KLNYFDTK 393
           Y        HDIALL++  P+  +  + P C+             SG+       +   +
Sbjct: 79  YNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGR 138

Query: 394 ESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            +L L  + + +++  TC +  + T+ ++  CA    GG+D+CQGDSGGP   +      
Sbjct: 139 SALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPH--VTEVEGT 196

Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
             + GI S+G +C       IYT+VS YV WI
Sbjct: 197 SFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-12
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
           ++GG  AK G+FP Q  +           V  FCGGS+++  +++TAAHC+ + +  T+V
Sbjct: 1   VVGGEDAKPGQFPWQVVL--------NGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV 52

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC+ +       V  G         T+    V++ I H NY        HDIALL++ 
Sbjct: 39  AAHCVETG--VKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELD 96

Query: 66  PPVEFSETLKPACLNRAHNVKSPTAIASGFG 96
            P+  +  + P C+             SG+ 
Sbjct: 97  EPLVLNSYVTPICIADKEYTNIFLKFGSGYV 127

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (336), Expect = 7e-37
 Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 15/219 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K+ CGG L+  N+V+TAAHC      +    +   +          + + + +       
Sbjct: 14  KYQCGGVLLDRNWVLTAAHCYNDKY-QVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSL 72

Query: 339 TEGTSQY------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
               +        +D+ LL+++ P + ++ +KP  L         T +ASG+G       
Sbjct: 73  LNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKF 132

Query: 393 KESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
           K    L  V L ++ N+ C K  E  +  + LCA  M GG  TC+ DSGGPL      +C
Sbjct: 133 KYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL------IC 186

Query: 452 MYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVW 489
              + GITS+G   CG    P++YT++  +  WI  T+ 
Sbjct: 187 DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 225

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  134 bits (336), Expect = 8e-37
 Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 13/217 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGK-----PRYVRFGLITKLSYSVTDNIHRVMQNIL 333
           ++ CGG LI P++V+TAAHC ++           +       +     +      +  I+
Sbjct: 21  EYLCGGVLIDPSWVITAAHCYSNNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIV 80

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTK 393
             +         +D+ LL ++ P + +  +K   L         T +ASG+G  N  +  
Sbjct: 81  TNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMV 140

Query: 394 ESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            S  L  V + +++N+ C +  +  +    LCA  M GGKDTC GDSGGPL      +C 
Sbjct: 141 VSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPL------ICD 194

Query: 453 YNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
             + GITS G   C    TPAIY ++  +  WI   +
Sbjct: 195 GVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVM 231

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 5e-35
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 12/215 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN-------IHRVMQN 331
              CG SLISPN++++AAHC     G            L                R+ + 
Sbjct: 24  GHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRI 83

Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYF 390
           I HP +     +  +DIALL++  P E+S  ++P CL  A     +  AI         +
Sbjct: 84  ISHPFFNDF--TFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY 141

Query: 391 DTKESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
               +L L K  + +IN  TC       +    +C   ++GG D+CQGDSGGPL ++  D
Sbjct: 142 GGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEAD 201

Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
             ++   G+ S+G  C   N P +YTR+  +  WI
Sbjct: 202 GRIF-QAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  126 bits (317), Expect = 5e-34
 Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 13/217 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSP----LGKPRYVRFGLITKLSYSVTDNIH-RVMQNIL 333
            + CGG L+ P +V+TAAHC++      LG+    +     +        +  +   ++L
Sbjct: 23  HFQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLL 82

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTK 393
              Y        HD+ LL++A P   ++ +K   L         T   SG+G ++ F  +
Sbjct: 83  KKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNR 142

Query: 394 ESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            S  L  V L + +N+ C++     +    LCAT        C GDSGG L      +C 
Sbjct: 143 GSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGAL------ICD 196

Query: 453 YNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
               GITS+G  +C   N   ++T+V  +  WI  T+
Sbjct: 197 GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 6   AAHCITSP----LGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTTEGTSQYHDIA 60
           AAHC++      LG+    +     +        +      ++L   Y        HD+ 
Sbjct: 39  AAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLM 98

Query: 61  LLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQ 110
           LL++A P   ++ +K   L         T   SG+G ++ F       +Q
Sbjct: 99  LLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQ 148

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 7e-34
 Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 16/212 (7%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGG LI P +V+TAAHC    L     V  G         +     V++ ++HP+Y 
Sbjct: 23  HLLCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLRQRESSQEQSSVVRAVIHPDYD 78

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
               S   DI LL++A P + SE ++P  L R  +  + +    G+GK    D      +
Sbjct: 79  A--ASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDF--PDTI 134

Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
               + +++ + C       +  + LCA     GKD+CQGDSGGPL      +C  ++ G
Sbjct: 135 QCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRG 188

Query: 458 ITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
           + S+G   CG    P +YT V  Y  WI  T+
Sbjct: 189 LVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 2e-33
 Identities = 74/214 (34%), Positives = 107/214 (50%), Gaps = 14/214 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCI-TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
             FCGG+LISP +V+TAAHC+  SP      V  G   +++         V +  L P  
Sbjct: 41  MHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR 100

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
                    DIALLK++ P   ++ + PACL   + V +        G      T  +  
Sbjct: 101 --------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGL 152

Query: 398 LMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           LM+  L +I N  C++ E     + S++LCA  +AGG D+CQGDSGGPL  +  +   Y 
Sbjct: 153 LMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPL--VCFEKDKYI 210

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + G+TS+G  C   N P +Y RVS +V WI   +
Sbjct: 211 LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           ++GG  A    +P Q  +         +    FCGG+LISP +V+TAAHC+
Sbjct: 18  VVGGCVAYPHSWPWQVSLRT-------RFGMHFCGGTLISPEWVLTAAHCL 61

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score =  123 bits (309), Expect = 4e-33
 Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             +CGGSL++ N V+TAAHC++        +R G +++ S  +T ++  V  +  +    
Sbjct: 23  GPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGN- 81

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPAC--LNRAHNVKSPTAIASGFGKLNYFDTKESL 396
                  +D+A+LK++  +     +  A    + +  V   +A  +G+G  +   +   +
Sbjct: 82  ------NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPV 135

Query: 397 RLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
            L+KV + I++  TC  Q  T  + +   CA V +GGKD+CQGDSGGP+           
Sbjct: 136 NLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVD-----SSNT 190

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           +IG  S+G  C   N   +Y  V     +I
Sbjct: 191 LIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 62.8 bits (151), Expect = 8e-12
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 8/52 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCIT 243
           I+GG+ A  G+FP    +         ++   +CGGSL++ N V+TAAHC++
Sbjct: 1   IVGGTSASAGDFPFIVSI--------SRNGGPWCGGSLLNANTVLTAAHCVS 44

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  123 bits (308), Expect = 5e-33
 Identities = 68/216 (31%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 274 TMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNIL 333
           T K ++  CGG LIS  +V+TAAHC     G+   V  G         T    +V + I+
Sbjct: 22  TEKGLRVICGGFLISRQFVLTAAHCK----GREITVILGAHDVRKRESTQQKIKVEKQII 77

Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTK 393
           H +Y +      HDI LLK+   VE +  +    L    +   P A+    G        
Sbjct: 78  HESYNS--VPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD 135

Query: 394 ESL-RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
            +   L +V L I++   C          Q+C       +    GDSGGPL      LC 
Sbjct: 136 PTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPL------LCA 189

Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
               GI SYG     A  PAI+TRVS YVPWI   +
Sbjct: 190 GVAHGIVSYGHPD--AKPPAIFTRVSTYVPWINAVI 223

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           IIGG  +     P+ A +  V E G    ++  CGG LIS  +V+TAAHC
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKG----LRVICGGFLISRQFVLTAAHC 46

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  123 bits (308), Expect = 7e-33
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 5/214 (2%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGGSLI+P++V+TA HCI++       +     + L  S            +HP + 
Sbjct: 17  HHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWN 76

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN-YFDTKESLR 397
           +   +  +DIAL+K++   +  + ++ A L  A ++    A     G    Y       +
Sbjct: 77  SNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDK 136

Query: 398 LMKVVLDIINNDTCSKQET-TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L + +L  ++ + CS+ +   +   +         +  C GDSGGPL     D   + + 
Sbjct: 137 LQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDTRSGCNGDSGGPLNCPAAD-GSWQVH 195

Query: 457 GITSY--GRQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+TS+     C     P ++TRVS ++ WI  T+
Sbjct: 196 GVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 229

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 203 FPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
           +  Q  + + ++G         CGGSLI+P++V+TA HCI++     +V
Sbjct: 2   WSWQVSLQYEKDGAF----HHTCGGSLIAPDWVVTAGHCISTSRTYQVV 46

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 18/104 (17%), Positives = 37/104 (35%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           A HCI++       +     + L  S            +HP + +   +  +DIAL+K++
Sbjct: 33  AGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLS 92

Query: 66  PPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKI 109
              +  + ++ A L  A ++    A     G    +        
Sbjct: 93  RSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDK 136

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score =  122 bits (307), Expect = 9e-33
 Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 14/214 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
            +FCGG+LI+P +V+TAAHC ++       V    +        +   + +    + N  
Sbjct: 23  GFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNEV 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
                   DI L+K+  P+  S+ + P  L  +           G+G +           
Sbjct: 83  -----LDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVP 137

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMA--GGKDTCQGDSGGPLQTIMPDLCMYNII 456
               ++++++  C      L++           GGKDTC GDSGGPL      +C     
Sbjct: 138 YCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPL------ICNGQFQ 191

Query: 457 GITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVW 489
           GI SYG   CG    P IYT V  Y  WI   + 
Sbjct: 192 GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 63.2 bits (152), Expect = 6e-12
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           +IGG+     E                    +FCGG+LI+P +V+TAAHC ++ 
Sbjct: 1   VIGGNECDINEHRFLVAF--------FNTTGFFCGGTLINPEWVVTAAHCDSTD 46

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 1e-32
 Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 14/219 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGG LI P +V+TAAHC                  LS +   +   +      P   
Sbjct: 25  HHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKN-EASKQTLEIKKFIPFSR 83

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLR 397
                Q +DI L+K+    + ++ +K   + ++           +G+G  +    + S  
Sbjct: 84  VTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDT 143

Query: 398 LMKVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           L +V + +++   C+ Q     +  +    +CA    G KD+C+GD+GGPL      +C 
Sbjct: 144 LREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPL------ICK 197

Query: 453 YNIIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTVWP 490
                I S G +CG A  P IYT ++  Y  WI   + P
Sbjct: 198 GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVP 236

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-32
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 43/252 (17%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              C G+++S  +V+TAAHC T    +          K    +   +     NI      
Sbjct: 31  HESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEA 90

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGF-------------G 385
                  +D+AL+K+   +++ +T++P CL           +                  
Sbjct: 91  GIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQD 150

Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE----------------TTLISSQLCATVMA 429
               F ++E  +L +  + I N D     E                  +    LC   ++
Sbjct: 151 IKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVS 210

Query: 430 G--GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHAN----------TPAIYTRV 477
                +TC+GDSGGPL  I+     +  +G+ S+G      N              +  +
Sbjct: 211 PYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINL 268

Query: 478 SYYVPWIVHTVW 489
              +PW+   + 
Sbjct: 269 FQVLPWLKEKLQ 280

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 16/91 (17%), Positives = 30/91 (32%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           AAHC T    +          K    +   +     NI             +D+AL+K+ 
Sbjct: 47  AAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLK 106

Query: 66  PPVEFSETLKPACLNRAHNVKSPTAIASGFG 96
             +++ +T++P CL           +     
Sbjct: 107 NKLKYGQTIRPICLPCTEGTTRALRLPPTTT 137

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  120 bits (301), Expect = 6e-32
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 13/211 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             FCGGSLI+  +V++AAHC  S       VR G          +      ++I+HP+Y 
Sbjct: 22  YHFCGGSLINSQWVVSAAHCYKSG----IQVRLGEDNINVVEGNEQFISASKSIVHPSYN 77

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
           +   +  +DI L+K+      +  +    L  +        + SG+G      T     L
Sbjct: 78  S--NTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVL 135

Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
             +   I+++ +C       + S+  CA  + G  D+CQGDSGGP+      +C   + G
Sbjct: 136 KCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQGDSGGPV------VCSGKLQG 189

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I S+G  C   N P +YT+V  YV WI  T+
Sbjct: 190 IVSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG        P+Q          ++     FCGGSLI+  +V++AAHC  S 
Sbjct: 1   IVGGYTCGANTVPYQV---------SLNSGYHFCGGSLINSQWVVSAAHCYKSG 45

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score =  120 bits (300), Expect = 9e-32
 Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 12/207 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
            +FCGGSLISP +++TAAHC+         V  G         T    +     +H NY 
Sbjct: 23  MYFCGGSLISPEWILTAAHCMDGA--GFVDVVLGAHNIREDEATQVTIQSTDFTVHENYN 80

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
           +      +DIA++++  PV  +  +    L             +G+G  +      S  L
Sbjct: 81  SF--VISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVL 138

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            +V + I++N  C       ++         GGK TC GDSGGPL             GI
Sbjct: 139 RQVDVPIMSNADCDAVYGI-VTDGNICIDSTGGKGTCNGDSGGPLN------YNGLTYGI 191

Query: 459 TSYGRQCG-HANTPAIYTRVSYYVPWI 484
           TS+G   G  A  P  +TRV+Y++ WI
Sbjct: 192 TSFGAAAGCEAGYPDAFTRVTYFLDWI 218

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 63.1 bits (152), Expect = 6e-12
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG  A    +PHQA +          D  +FCGGSLISP +++TAAHC+   
Sbjct: 1   IVGGVEAVPNSWPHQAALFI--------DDMYFCGGSLISPEWILTAAHCMDGA 46

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 9e-32
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
            FCGGSLI P +V+TAAHC+   +     +R   +      +      +  + +  +   
Sbjct: 27  HFCGGSLIHPQWVLTAAHCVGPDVKDLAALR---VQLREQHLYYQDQLLPVSRIIVHPQF 83

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP---TAIASGFGKLNYFDTKESL 396
                  DIALL++  PV+ S  +    L  A     P     +       N        
Sbjct: 84  YTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPF 143

Query: 397 RLMKVVLDIINNDTCSKQ---------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
            L +V + I+ N  C  +         +  ++   +        +D+CQGDSGGPL  + 
Sbjct: 144 PLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCA-GNTRRDSCQGDSGGPL--VC 200

Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                +   G+ S+G  C   N P IYTRV+YY+ WI H V
Sbjct: 201 KVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (292), Expect = 2e-30
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 10/218 (4%)

Query: 276 KDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP 335
              +  CGG+LI+PN+V+TAAHCI++ L     +    +     +       V    +H 
Sbjct: 37  NTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVEDEA-GSLYVGVDTIFVHE 95

Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN-YFDTKE 394
            + +      +DIAL+K+A  VE  +T++ ACL    ++          G    Y +   
Sbjct: 96  KWNS--FLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPI 153

Query: 395 SLRLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           +  L + +  +++  TCS+++   T +   +      G    C GDSGGPL         
Sbjct: 154 AAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDSGGPL--NCQADGQ 211

Query: 453 YNIIGITSYG--RQCGHANTPAIYTRVSYYVPWIVHTV 488
           +++ GI S+G    C     P ++TRVS Y+ WI   +
Sbjct: 212 WDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           ++GG  A    +P Q  + ++ +       +  CGG+LI+PN+V+TAAHC
Sbjct: 14  VVGGEDAIPHSWPWQISLQYLRDNT----WRHTCGGTLITPNHVLTAAHC 59

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  116 bits (290), Expect = 3e-30
 Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 8/217 (3%)

Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN 336
             +  CGG+L+  ++V+TAAHCI+S       +    ++  +        +V + ++H +
Sbjct: 25  QWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRHSLS--TNEPGSLAVKVSKLVVHQD 82

Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK-LNYFDTKES 395
           + +   S  +DIALLK+A PV  ++ ++  CL  A  +     +    G      +    
Sbjct: 83  WNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASP 142

Query: 396 LRLMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
             L +  L +++  TCSK     + + + +      G   +C GDSGGPL     +   +
Sbjct: 143 DILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPLNCQGAN-GQW 201

Query: 454 NIIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
            + GI S+G    C + + P+++TRVS Y+ WI   +
Sbjct: 202 QVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.0 bits (159), Expect = 9e-13
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG  A+   +P Q  + +   G      +  CGG+L+  ++V+TAAHCI+S 
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQ----WRHTCGGTLVDQSWVLTAAHCISSS 50

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (289), Expect = 3e-30
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 17/221 (7%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K  CG  LI P++V+TAAHC+         +    + +      D   + +    + + +
Sbjct: 24  KLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKS 83

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP------TAIASGFGKLNYFDT 392
           T      +DIALL +A P   S+T+ P CL  +   +          + +G+G  +  + 
Sbjct: 84  T----TDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREK 139

Query: 393 ----KESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
                 +  L  + + ++ ++ CS+     +  + LCA ++   +D C+GDSGGP+  + 
Sbjct: 140 EAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPM--VA 197

Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
                + ++G+ S+G  CG  +   +YT+VS Y+ WI   +
Sbjct: 198 SFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 3e-12
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           +I G   + G+ P Q  V  ++        K  CG  LI P++V+TAAHC+   
Sbjct: 1   LIDGKMTRRGDSPWQ--VVLLDSKK-----KLACGAVLIHPSWVLTAAHCMDES 47

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  116 bits (289), Expect = 4e-30
 Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 9/219 (4%)

Query: 276 KDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP 335
                 CGG+LI  N+VMTAAHC+         V  G       + T+    V + ++HP
Sbjct: 24  SSWAHTCGGTLIRQNWVMTAAHCVDRE--LTFRVVVGEHNLNQNNGTEQYVGVQKIVVHP 81

Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY-FDTKE 394
            + T+  +  +DIALL++A  V  +  ++   L RA  + +  +     G      + + 
Sbjct: 82  YWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQL 141

Query: 395 SLRLMKVVLDIINNDTC--SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           +  L +  L  ++   C  S    + + + +      G +  CQGDSGGPL  ++     
Sbjct: 142 AQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNG--Q 199

Query: 453 YNIIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTVW 489
           Y + G+TS+  +  C     P ++TRVS Y+ WI + + 
Sbjct: 200 YAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.0 bits (154), Expect = 4e-12
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           ++GG+ A+   +P Q  + +             CGG+LI  N+VMTAAHC+
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSS----WAHTCGGTLIRQNWVMTAAHCV 47

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 8e-30
 Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 11/221 (4%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K  CGGSLI  ++V+TA  C  S   K      G+              +  + L     
Sbjct: 22  KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYG-- 79

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
                +  D+ L+K+A P    + +    L    +        S +G            L
Sbjct: 80  ----PEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLL 135

Query: 399 MKVVLDIINNDTCSKQETTLI---SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
               L I+ N+ CS+     +    S++CA     G   C+GD GGPL  +     M  +
Sbjct: 136 RVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL--VCEQHKMRMV 193

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
           +G+   GR C   N P I+ RV+YY  WI   +   + P S
Sbjct: 194 LGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS 234

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 8e-09
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 9/53 (16%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           ++ G   +         +            K  CGGSLI  ++V+TA  C  S
Sbjct: 1   VVNGIPTR-TNIGWMVSL--------RYRNKHICGGSLIKESWVLTARQCFPS 44

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 3e-29
 Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 11/213 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGG L++  +V++AAHC+         V+  L          +          P+  
Sbjct: 23  AHLCGGVLVAEQWVLSAAHCLEDA--ADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD 80

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN-YFDTKESLR 397
           ++  +  HD+ LL+++        ++P    R     +P  +    G        +    
Sbjct: 81  SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDS 140

Query: 398 LMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
           L  V+L +++  TC+++       ++      +  +D+C+GDSGGPL      +C   + 
Sbjct: 141 LQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPL------VCGGVLE 194

Query: 457 GITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
           G+ + G R CG+   P IYTRV+ Y  WI   +
Sbjct: 195 GVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG  A+    P+ A V          +    CGG L++  +V++AAHC+   
Sbjct: 1   ILGGREAEAHARPYMASVQL--------NGAHLCGGVLVAEQWVLSAAHCLEDA 46

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-29
 Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 11/215 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           + FCGG+++S  Y++TAAHC+         V      + +             ++  +  
Sbjct: 24  EGFCGGTILSEFYILTAAHCLYQAKRFKVRVGD----RNTEQEEGGEAVHEVEVVIKHNR 79

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRA-----HNVKSPTAIASGFGKLNYFDTK 393
               +   DIA+L++  P+ F   + PACL          +   T I SGFG+ +    +
Sbjct: 80  FTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139

Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
            +   M  V  +  N         +  +  CA      +D CQGDSGGP  T   D   Y
Sbjct: 140 STRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TY 197

Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + GI S+G  C       IYT+V+ ++ WI  ++
Sbjct: 198 FVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 7/54 (12%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG   K GE P QA +         ++ + FCGG+++S  Y++TAAHC+   
Sbjct: 1   IVGGQECKDGECPWQALLIN-------EENEGFCGGTILSEFYILTAAHCLYQA 47

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 2e-28
 Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 17/213 (7%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGG LI  ++V+TAAHC  S +     V  G            I  V++ I HP Y 
Sbjct: 27  SKKCGGFLIREDFVLTAAHCSGSKI----QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYN 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT-KESLR 397
           ++  +  +DI LLK+    + S  +KP  L R +    P  +    G        K S  
Sbjct: 83  SK--TISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDT 140

Query: 398 LMKVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
           L +V L +  +  C            ++CA      + + +GDSGGPL      +C    
Sbjct: 141 LQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDSGGPL------VCKKVA 194

Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            GI SYG+  G  +TP  +T+VS ++ WI  T+
Sbjct: 195 AGIVSYGQNDG--STPRAFTKVSTFLSWIKKTM 225

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
           IIGG  AK    P+ A +  ++E          CGG LI  ++V+TAAHC  S +  T+
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSG----SKKCGGFLIREDFVLTAAHCSGSKIQVTL 55

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (276), Expect = 3e-28
 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 13/232 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CGG+LI+  +V++AAHC          +       LS    D   R +  ++ P+  
Sbjct: 23  AQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTY 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA-----IASGFGKLNYFDTK 393
             GT+  HDIALL++  PV  ++ + P CL      +   A     + SG+G+L      
Sbjct: 83  VPGTT-NHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGAT 141

Query: 394 ESLRLMKVVLDIINNDTCSKQE-----TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
               ++  V  ++  D   +         +     CA    G KD+C+GDSGGP      
Sbjct: 142 ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPH--ATH 199

Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSLTT 500
               + + GI S+G+ C       +YTRVS Y+ W+   +  +  P   L  
Sbjct: 200 YRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRPGVLLRA 251

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 6e-28
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 20/220 (9%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           K  C G+LI+ ++V+TAAHC  +   +       +  +        + +      +   T
Sbjct: 23  KTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPAT 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLR 397
            E      D+ LL++    + ++ +    L +   +VK  T          +     S  
Sbjct: 83  RE-----GDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDT 137

Query: 398 LMKVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           L +V + II+   C+ +        +  + +CA  + GG+D+C GDSG PL      LC 
Sbjct: 138 LREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL------LCE 191

Query: 453 YNIIGITSYG--RQCGHANTPAIYTRVS-YYVPWIVHTVW 489
               G+TS+G   +CG    P +Y  +S  ++ WI+ T+ 
Sbjct: 192 GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK 231

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score =  109 bits (272), Expect = 6e-28
 Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 8/217 (3%)

Query: 276 KDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP 335
                 CGGSLI   +VMTAAHC+ S       +  G     +    + I  V    +H 
Sbjct: 24  SSYYHTCGGSLIRQGWVMTAAHCVDSARTWRVVL--GEHNLNTNEGKEQIMTVNSVFIHS 81

Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK-LNYFDTKE 394
            + ++  +  +DIALL++      +  ++ A L  ++ +          G          
Sbjct: 82  GWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPL 141

Query: 395 SLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGG-KDTCQGDSGGPLQTIMPDLCMY 453
           S  L +  L  +++ TCS       + +       GG    C GDSGGPL         Y
Sbjct: 142 SDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGANSGCNGDSGGPL--NCQVNGSY 199

Query: 454 NIIGITSY--GRQCGHANTPAIYTRVSYYVPWIVHTV 488
            + G+TS+     C  +  P ++TRVS Y+ W+   +
Sbjct: 200 YVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 64.1 bits (154), Expect = 4e-12
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG  A+   +P Q  + +             CGGSLI   +VMTAAHC+ S 
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSS----YYHTCGGSLIRQGWVMTAAHCVDSA 50

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 3e-27
 Identities = 52/222 (23%), Positives = 83/222 (37%), Gaps = 14/222 (6%)

Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPR----YVRFGLITKLSYSVTDNIHRVMQNIL 333
           +    GG+L+   +++TAAH +     + +       F   T +   +    H + +  +
Sbjct: 20  IHGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSV 79

Query: 334 HPNYTTEGTSQY-HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
           HP+Y  + +  +  DIALL++   V     L P CL           +    G     + 
Sbjct: 80  HPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK 139

Query: 393 KESLRLMKVVLDIINNDTCSKQ------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTI 446
                L  V L + N   C               +  CA   +  +D CQGDSGG     
Sbjct: 140 IAH-DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVR 198

Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            P+   +   GI S+G  C        YT+V  YV WI   +
Sbjct: 199 DPNTDRWVATGIVSWGIGCS--RGYGFYTKVLNYVDWIKKEM 238

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score =  106 bits (265), Expect = 5e-27
 Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 12/210 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CG S++  N V+TAAHC+       R         LS S             + +  
Sbjct: 23  SHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNYDDF 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
                  +D+AL+ +  P++F++ ++P  L+                            L
Sbjct: 83  L----LRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNAL 138

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
            ++ L +     C + +  +I S +C T+   G+  C GDSGGPL      +     IGI
Sbjct: 139 QEIELIVHPQKQCERDQWRVIDSHIC-TLTKRGEGACHGDSGGPL------VANGAQIGI 191

Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            S+G  C     P +YTRVS +V WI   +
Sbjct: 192 VSFGSPCAL-GEPDVYTRVSSFVSWINANL 220

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           I+GG  A  G++P+Q  +               CG S++  N V+TAAHC+   
Sbjct: 1   IVGGKDAPVGKYPYQVSLRL--------SGSHRCGASILDNNNVLTAAHCVDGL 46

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score =  107 bits (267), Expect = 6e-27
 Identities = 34/225 (15%), Positives = 60/225 (26%), Gaps = 18/225 (8%)

Query: 266 VGFLEEGGTMKDVKWFCGGSLISP------NYVMTAAHCITSPLGKPRYVRFGLITKLSY 319
           VG   + GT       C GSL++        Y +TA HC          +      +   
Sbjct: 25  VGAYSKSGT-----LACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQ--- 76

Query: 320 SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTA 379
           + T        +  + + +   T       +       +F+        N A N+     
Sbjct: 77  NSTCRAPNTPASGANGDGSMSQT--QSGSTVKATYATSDFTLLELNNAANPAFNLFWAGW 134

Query: 380 IASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDS 439
                               K + +  +  +         ++ L       G  T  G S
Sbjct: 135 DRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSS 194

Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
           G P+ +    + +  + G  S     G  N    Y RV       
Sbjct: 195 GSPIYSPEKRV-LGQLHGGPSSCSATG-TNRSDQYGRVFTSWTGG 237

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 9/102 (8%), Positives = 21/102 (20%), Gaps = 5/102 (4%)

Query: 6   AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
           A HC          +      +   + T        +  + + +   T       +    
Sbjct: 55  AHHCGMGTASTAASIVVYWNYQ---NSTCRAPNTPASGANGDGSMSQT--QSGSTVKATY 109

Query: 66  PPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYS 107
              +F+        N A N+                     +
Sbjct: 110 ATSDFTLLELNNAANPAFNLFWAGWDRRDQNYPGAIAIHHPN 151

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score =  105 bits (263), Expect = 8e-27
 Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
           +   CGG+L + + V+TAAHC++   G    +          S +    R  + +  P Y
Sbjct: 18  LSMGCGGALYAQDIVLTAAHCVSGS-GNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGY 76

Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
                    D AL+K+A P+                  +           N     +   
Sbjct: 77  NG----TGKDWALIKLAQPINQPTLKIATTTAYNQGTFT-----VAGWGANREGGSQQRY 127

Query: 398 LMKVVLDIINNDTCS---KQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
           L+K  +  +++  C      E              GG DTCQGDSGGP+         + 
Sbjct: 128 LLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNA-DEWI 186

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
            +GI S+G  C     P +YT VS +   I    
Sbjct: 187 QVGIVSWGYGCARPGYPGVYTEVSTFASAIASAA 220

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 63.2 bits (152), Expect = 6e-12
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 12/54 (22%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
           ++GG+RA  GEFP    +               CGG+L + + V+TAAHC++  
Sbjct: 1   VVGGTRAAQGEFPFMVRL------------SMGCGGALYAQDIVLTAAHCVSGS 42

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 4e-26
 Identities = 65/212 (30%), Positives = 88/212 (41%), Gaps = 15/212 (7%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             FCGG LI  N+V+TAAHC      +   V  G         T     V++   HP Y 
Sbjct: 25  SKFCGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYN 80

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESL-R 397
           T  ++ +HDI LLK+      +  +         N   P  +    G       K     
Sbjct: 81  T--STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDT 138

Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
           L +V L +++   CS       + QLC       K   +GDSGGPL      LC     G
Sbjct: 139 LQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQG 192

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW 489
           I SYGR    A  PA++TR+S+Y PWI   + 
Sbjct: 193 IVSYGRSD--AKPPAVFTRISHYRPWINQILQ 222

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 5e-11
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 194 GGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           GG+  K    P+ A +  V   G       FCGG LI  N+V+TAAHC
Sbjct: 1   GGTECKPHSRPYMAYLEIVTSNGP----SKFCGGFLIRRNFVLTAAHC 44

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (258), Expect = 6e-26
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 11/220 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
                G+L+  N+V+TAAH +         +   + T    S            +H  YT
Sbjct: 21  GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYT 80

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR- 397
            +     +DIAL+K+   V  +  + P CL R            G         +  L  
Sbjct: 81  HD-AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLAR 139

Query: 398 -LMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
            LM V + I+++  C+           ++ ++ LCA + +GGKD+C+GDSGG L  +  +
Sbjct: 140 NLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE 199

Query: 450 LCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
              + + GI S+G   CG A    +YT+V  Y+PWI + +
Sbjct: 200 TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
           I GG +AK G+FP Q  +                 G+L+  N+V+TAAH +  
Sbjct: 1   IYGGQKAKPGDFPWQVLILG----------GTTAAGALLYDNWVLTAAHAVYE 43

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 15/214 (7%)

Query: 276 KDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP 335
              +  CGG L+  ++V+TAAHC     G    V  G         T       + I HP
Sbjct: 23  PAGQSRCGGFLVREDFVLTAAHCW----GSNINVTLGAHNIQRRENTQQHITARRAIRHP 78

Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKES 395
            Y     +  +DI LL+++  V  +  + P  L RA     P  + +  G       + +
Sbjct: 79  QYN--QRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGT 136

Query: 396 LRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
             L +V L +  +  C +   +     Q+C       K   +GDSGGPL      LC   
Sbjct: 137 DTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPL------LCNNV 190

Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
             GI SYG+  G    P ++TRVS ++PWI  T+
Sbjct: 191 AHGIVSYGKSSG--VPPEVFTRVSSFLPWIRTTM 222

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           IIGG  ++    P+ A +      G     +  CGG L+  ++V+TAAHC
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAG-----QSRCGGFLVREDFVLTAAHC 45

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (251), Expect = 4e-25
 Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
             CGG L+  ++V+TAAHC+         V  G    +    T  +  V + I HP+Y  
Sbjct: 27  HICGGFLVREDFVLTAAHCLG----SSINVTLGAHNIMERERTQQVIPVRRPIPHPDYND 82

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESL-RL 398
           E  +  +DI LLK+    + ++ + P  L R+     P  + S  G         S  +L
Sbjct: 83  E--TLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKL 140

Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
            +V L++ + + C  + +  +  +Q+CA   +  K++  GDSGGPL      +C     G
Sbjct: 141 QEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPL------VCNGVAQG 194

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           I SYGR  G   TP +YTR+S ++ WI  T+
Sbjct: 195 IVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 3e-11
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           IIGG  AK    P+ A + F   G +       CGG L+  ++V+TAAHC
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKS-----HICGGFLVREDFVLTAAHC 45

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 4e-24
 Identities = 61/212 (28%), Positives = 86/212 (40%), Gaps = 17/212 (8%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
             CGG LI  ++V+TAAHC     G    V  G         T     V + I HP Y  
Sbjct: 27  KRCGGFLIQDDFVLTAAHCW----GSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNP 82

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY-FDTKESLRL 398
           +  S  +DI LL++    + +  ++P  L        P    S  G        K S  L
Sbjct: 83  KNFS--NDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTL 140

Query: 399 MKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
            +V + +  +  C    +     + +LC       K + +GDSGGPL      +C     
Sbjct: 141 QEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL------VCNKVAQ 194

Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           GI SYGR  G    P   T+VS +V WI  T+
Sbjct: 195 GIVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           IIGG  AK    P+ A +   ++          CGG LI  ++V+TAAHC
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSL-----KRCGGFLIQDDFVLTAAHC 45

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 98.8 bits (244), Expect = 5e-24
 Identities = 54/213 (25%), Positives = 82/213 (38%), Gaps = 8/213 (3%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
              CG SL+S    ++A+HC+   L     V  GL  +   S T   +     + H NY 
Sbjct: 26  SHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTM-HENYG 84

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKE-SLR 397
               S  +DIA+L +A  +     ++ A L   +N           G      T      
Sbjct: 85  AGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDI 144

Query: 398 LMKVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
           L K  + +I    C+          +  + +C    AG    C GDSGGPL        +
Sbjct: 145 LQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGGTRV 204

Query: 453 YNII-GITSYGRQCGHANTPAIYTRVSYYVPWI 484
             +   + S G      + P++YTRVS Y+ WI
Sbjct: 205 VGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 8e-24
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 21/225 (9%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT- 339
           + GG+LI+  +V+TAAH +        YV    +   S      +       +HP +   
Sbjct: 35  WAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQT-SRLAKSKMLTPEHVFIHPGWKLL 93

Query: 340 ----EGTSQYHDIALLKIAPPVEFSETLKPACLNRA----HNVKSPTAIASGFGKLNYFD 391
                 T+  +DIAL+++  PV+   T+ P CL       + +     + SG+G+    D
Sbjct: 94  AVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD 153

Query: 392 TKESLRLMKVVL-------DIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQ 444
               L+  ++ +       ++      +  E  + +  +       G D+C+GDSGG   
Sbjct: 154 RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFA 213

Query: 445 TIMPDL-CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
              P+    +   G+ S+G QCG   T  +YTRV  YV WI+ T+
Sbjct: 214 VQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTM 255

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 9e-09
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           IIGGS A    FP Q                 + GG+LI+  +V+TAAH 
Sbjct: 14  IIGGSDADIKNFPWQVFFD-----------NPWAGGALINEYWVLTAAHV 52

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (240), Expect = 1e-23
 Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 17/211 (8%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           + FCGG+LI   +VMTAA C  S       V  G                + ++    Y 
Sbjct: 23  RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYD 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
            +     +D+ LL++      + ++    L   +            G  +        R 
Sbjct: 83  PQ--QNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRF 140

Query: 399 -MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
              V + +   D C         + +C  V+      C GD G PL      +C     G
Sbjct: 141 PRFVNVTVTPEDQC-------RPNNVCTGVLTRRGGICNGDGGTPL------VCEGLAHG 187

Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
           + S+         P  +TRV+ +  WI   +
Sbjct: 188 VASFSLGPC-GRGPDFFTRVALFRDWIDGVL 217

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           I+GG +A+  +FP  A +            + FCGG+LI   +VMTAA C 
Sbjct: 1   IVGGRKARPRQFPFLASI--------QNQGRHFCGGALIHARFVMTAASCF 43

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (240), Expect = 1e-23
 Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 17/211 (8%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             FCG +LI+PN+VM+AAHC+ +   +   V    +   + S  +   +V          
Sbjct: 23  GHFCGATLIAPNFVMSAAHCVANVNVRAVRVV---LGAHNLSRREPTRQVFAVQRIFENG 79

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
            +  +  +DI +L++      +  ++ A L                G       +    +
Sbjct: 80  YDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASV 139

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
           ++ +   +    C +         +C  V       C GDSG PL      +C   I GI
Sbjct: 140 LQELNVTVVTSLCRRS-------NVCTLVRGRQAGVCFGDSGSPL------VCNGLIHGI 186

Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
            S+ R  C     P  +  V+ +V WI   +
Sbjct: 187 ASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 3e-11
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCIT 243
           I+GG RA+   +P    +              FCG +LI+PN+VM+AAHC+ 
Sbjct: 1   IVGGRRARPHAWPFMVSLQL--------RGGHFCGATLIAPNFVMSAAHCVA 44

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 95.6 bits (236), Expect = 3e-23
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 24/205 (11%)

Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
            C G+LI+PN ++T  HC+ +   +    +  +   ++ S   N    M     P+    
Sbjct: 31  SCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYIN 90

Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
             +  +D A++K    +  +   +           +         K     +   +   +
Sbjct: 91  TGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDK---MRSTGKVSQWE 147

Query: 401 VVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITS 460
           +   +   DT     T                DT  G+SG  +           I+G+ +
Sbjct: 148 MSGSVTREDTNLAYYT---------------IDTFSGNSGSAMLD-----QNQQIVGVHN 187

Query: 461 YGRQCGHANT-PAIYTRVSYYVPWI 484
            G   G  N  P        ++ + 
Sbjct: 188 AGYSNGTINGGPKATAAFVEFINYA 212

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 4e-23
 Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 17/211 (8%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
             FCGG+LI P++V+TAAHC+      P+ +   ++   +    +   +           
Sbjct: 26  SHFCGGTLIHPSFVLTAAHCLRD---IPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNN 82

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
            +  ++ +DI L++++ P   S ++    L +              G           ++
Sbjct: 83  YDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQV 142

Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
           ++ +   +    C           +C  V       C GDSGGPL      +C   I GI
Sbjct: 143 LQELNVTVVTFFCR-------PHNICTFVPRRKAGICFGDSGGPL------ICDGIIQGI 189

Query: 459 TSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
            S+    C     P  +TRV+ YV WI  T+
Sbjct: 190 DSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 6e-11
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
           I+GG  A+    P+ A +      G+      FCGG+LI P++V+TAAHC+
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGS-----HFCGGTLIHPSFVLTAAHCL 46

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 87.2 bits (214), Expect = 4e-20
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 14/208 (6%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           + +CGGSLI   +++TAAHC+   +    Y+             +    V    +  +  
Sbjct: 27  RVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGS-------AVQYEGEAVVNSERIISHSM 79

Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
               +  +D+AL+KI          +P  L     + +                 +++ L
Sbjct: 80  FNPDTYLNDVALIKIPHVEYTDNI-QPIRLPSGEELNNKFENIWATVSGWGQSNTDTVIL 138

Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
                 +I+ND C+++    I          + GK  C GDSGGP            +IG
Sbjct: 139 QYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGDSGGP----FVLSDKNLLIG 194

Query: 458 ITSYGRQCG-HANTPAIYTRVSYYVPWI 484
           + S+    G  +  P  ++RV+ Y+ WI
Sbjct: 195 VVSFVSGAGCESGKPVGFSRVTSYMDWI 222

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 60.2 bits (144), Expect = 6e-11
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
           II G  A  G FP+QA +    +       + +CGGSLI   +++TAAHC
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQR----RVWCGGSLIDNKWILTAAHC 46

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 65.4 bits (158), Expect = 6e-13
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 38/194 (19%)

Query: 288 SPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHD 347
              Y +TA HC                   S S   ++  V +    P           D
Sbjct: 24  GARYFVTAGHCTNIS------------ANWSASSGGSVVGVREGTSFPTN---------D 62

Query: 348 IALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIIN 407
             +++       + T+     +      +                 ++++       + +
Sbjct: 63  YGIVRYTDGSSPAGTVDLYNGSTQDISSAAN-----------AVVGQAIKKSGSTTKVTS 111

Query: 408 NDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGH 467
               +   T          ++     +  GDSGG              +GI S    C  
Sbjct: 112 GTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAH------FAGSVALGIHSGSSGCSG 165

Query: 468 ANTPAIYTRVSYYV 481
               AI+  V+  +
Sbjct: 166 TAGSAIHQPVTEAL 179

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 32/205 (15%)

Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
           +   G ++  + ++T  H + +  G P  ++         +  +      Q   +     
Sbjct: 34  FIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYS---- 89

Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
                  D+A++K +P  +     +        N                    ++ + +
Sbjct: 90  ----GEGDLAIVKFSPNEQNKHIGEVVKPATMSN----------------NAETQTNQNI 129

Query: 400 KVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
            V     +    +  E+    + L    M     T  G+SG P+           +IGI 
Sbjct: 130 TVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFN-----EKNEVIGIH 184

Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
             G    +    A++        ++
Sbjct: 185 WGG--VPNEFNGAVFI-NENVRNFL 206

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 4/43 (9%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 202 EFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
              +   V +++         +   G ++  + ++T  H + +
Sbjct: 16  NGHYAP-VTYIQ--VEAPTGTFIASGVVVGKDTLLTNKHVVDA 55

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
           +    G LI  N V+T  H      G P  V F        +   N              
Sbjct: 54  QTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNG--NTETPYGEYEVKEIL 111

Query: 339 TEGTSQYHDIALLKIAPP---VEFSETLKPACLNRAHN 373
            E      D+AL+++ P    V   + + PA +  +++
Sbjct: 112 QEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSND 149

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
             G LI  N ++T  H        P  + F           +                  
Sbjct: 50  ATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNE-FPTPYGKFEAEEIKESP 108

Query: 342 TSQYHDIALLKIAPP---VEFSETLKPACLNRAHNVK-SPTAIASGF 384
             Q  D+A++K+ P        + ++PA +    ++         G+
Sbjct: 109 YGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGY 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.88
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.85
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.71
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.7
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	99.69
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.68
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.67
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	99.67
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	99.67
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.67
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	99.66
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.66
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.65
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	99.65
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.64
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	99.64
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.63
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.63
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.63
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.62
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.62
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.62
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.61
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.61
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	99.61
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	99.6
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	99.6
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.6
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	99.6
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.6
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.59
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.59
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.58
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.58
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.58
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.57
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.57
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	99.56
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.55
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.54
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	99.54
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.54
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.53
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.52
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.51
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	99.5
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.46
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.45
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.39
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.15
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.05
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.8
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	98.72
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.55
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	98.36
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.33
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.2
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.19
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	98.17
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	97.95
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	97.79
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	97.77
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.64
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	97.26
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	97.12
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.04
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	95.37
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	95.16
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	94.06
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	92.88
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	92.5
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	89.78
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	82.27
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	80.17

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-43  Score=328.45  Aligned_cols=229  Identities=27%  Similarity=0.451  Sum_probs=188.7

Q ss_pred             eeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeee
Q psy3170         191 MIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLE  270 (525)
Q Consensus       191 ~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (525)
                      ||+||.+|+.+||||+|+|.+.                                                          
T Consensus         2 ri~gG~~a~~~e~Pw~v~i~~~----------------------------------------------------------   23 (240)
T d1mzaa_           2 EIIGGKEVSPHSRPFMASIQYG----------------------------------------------------------   23 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEET----------------------------------------------------------
T ss_pred             EEECCEECCCCCCCcEEEEEEC----------------------------------------------------------
Confidence            7999999999999999998752                                                          


Q ss_pred             cCCccccceeEeEEEEEeCCEEEecCCCCCCCCC-CceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceE
Q psy3170         271 EGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLG-KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIA  349 (525)
Q Consensus       271 ~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIA  349 (525)
                             ..++|+||||+++||||||||+.+... ....+..+...............+..++.||.|..  ....+|||
T Consensus        24 -------~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~--~~~~~diA   94 (240)
T d1mzaa_          24 -------GHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTS--DPQSNDIM   94 (240)
T ss_dssp             -------TEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEECCCSSC--SSSSSCCE
T ss_pred             -------CeEEEEEEEEeCCEEEECeEcccccCCcceeEEEEeecccCcCCccceeEeeeeeeeeccccc--cccCcceE
Confidence                   257899999999999999999987533 34555565542222222233445899999999988  67779999


Q ss_pred             EEEECCCcccCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-----CCCCcE
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-----LISSQL  423 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-----~~~~~~  423 (525)
                      ||+|++++.|++.++||||+.... .....+.+.|||.........+..|+...+.+++.++|+.....     ....++
T Consensus        95 ll~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~  174 (240)
T d1mzaa_          95 LVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMV  174 (240)
T ss_dssp             EEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTTTTTTTTCCCTTEE
T ss_pred             EEeecceeeeeeccccccccccccccceeeEEEEEeccccCCcCcCCcccEEEEEEEecHHHhhhhhhccCCcccccceE
Confidence            999999999999999999987665 45667889999987765556677899999999999999875432     457789


Q ss_pred             EEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcC-Cchhhhcccccccc
Q psy3170         424 CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTVWPDQ  492 (525)
Q Consensus       424 Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~-~~~~WI~~~i~~~~  492 (525)
                      |++...+..+.|.|||||||++      +++|+||+|+|..|+....|.+||||+ +|++||+++|++..
T Consensus       175 c~~~~~~~~~~C~gDsGgPl~~------~~~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~~~i~~~~  238 (240)
T d1mzaa_         175 CAGDAKGQKDSCKGDAGGPLIC------KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPPH  238 (240)
T ss_dssp             EEECTTSCCCCCTTCTTCEEEE------TTEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTCCSC
T ss_pred             EeccCCCCccCccCCCCCeEEE------CCEEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHHHHccCCC
Confidence            9988777788999999999987      678999999999998888999999998 68999999998743

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-42  Score=323.29  Aligned_cols=200  Identities=30%  Similarity=0.572  Sum_probs=167.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+....  .  ...................+..+++||.|+.  ....+|||||+|++++.
T Consensus        22 ~~~C~GtLIs~~~VLTaAhCv~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~hp~y~~--~~~~~diAll~L~~~v~   95 (223)
T d1j16a_          22 YHFCGGSLINDQWVVSAAHCYKSRI--Q--VRLGEHNINVLEGNEQFVNAAKIIKHPNFDR--ETYNNDIMLIKLSSPVK   95 (223)
T ss_dssp             SEEEEEEEEETTEEEECGGGCCSSC--E--EEESCSBTTSCCSCCEEEEEEEEEECTTCBT--TTTBTCCEEEEESSCCC
T ss_pred             CEEEEEEEEcCCEEEeCHHHCCCcC--C--ceeeeeeeccccccceeeeeeeEEecCCCCc--cccceeEEEEEecCccc
Confidence            5789999999999999999997631  1  1111110111122223444889999999988  67789999999999999


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCcC
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~g  437 (525)
                      |+++++|||||......+..+.++|||.....+...+..|+...+.+++.++|+..+.. +.++++|++...++.+.|.|
T Consensus        96 ~~~~~~picL~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~~c~g  175 (223)
T d1j16a_          96 LNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQG  175 (223)
T ss_dssp             CBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSBCEEEEEEEECHHHHHSSSSCCCCTTEEEESCTTCSCBCCTT
T ss_pred             cceeEEEEecCCcCCCCCCEEEEEeeeeeeCCCccCcceeeEEEEEEEEhhHhhccccceeCCCceEEecCCCCCcccCC
Confidence            99999999999888888899999999988777656677899999999999999987765 67889999887778889999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |+||||++      +++|+||+|++..|+..+.|.+||||++|.+||+++|++
T Consensus       176 d~g~pl~~------~~~L~Gi~s~~~~~~~~~~p~vft~v~~~~~WI~~~i~~  222 (223)
T d1j16a_         176 DSGGPVVC------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAA  222 (223)
T ss_dssp             CTTCEEEE------TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ccCCcEEE------eeEEEEEEEEccCCCCCCCCEEEEEhHHhHHHHHHHHhc
Confidence            99999987      578999999999999888999999999999999999964

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=3.2e-42  Score=323.87  Aligned_cols=231  Identities=32%  Similarity=0.548  Sum_probs=189.9

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..++|||+|.|.....+.                                                       
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~-------------------------------------------------------   25 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFIGF-------------------------------------------------------   25 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTE-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCC-------------------------------------------------------
Confidence            6899999999999999997654321                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCC-CceEEEEEEEe-ecccccccc-eEEEEEEEeCCCCCCCCCCcccce
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLG-KPRYVRFGLIT-KLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDI  348 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~-~~~~v~~g~~~-~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DI  348 (525)
                            ..++|+|+||+++||||||||+.+... ....++++... ......... ...|.++++||.|+.  ....+||
T Consensus        26 ------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~h~~y~~--~~~~~di   97 (237)
T d2f91a1          26 ------SFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDY--NLLDNDI   97 (237)
T ss_dssp             ------EEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCT--TTCTTCC
T ss_pred             ------CcEEEEEEEEeCCEEEECcccccccCCccccceeEEeeecccccccCcceeeeEEEEEEccccCC--Cccccce
Confidence                  357899999999999999999976522 22334444331 112222223 334999999999998  6778999


Q ss_pred             EEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCAT  426 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~  426 (525)
                      |||+|++++.+++.++|||++......+..+..+|||.....+ ..+..|++..+.+++.+.|...+..  +...++|+.
T Consensus        98 All~l~~~v~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~c~~  176 (237)
T d2f91a1          98 SLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGG-NTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAG  176 (237)
T ss_dssp             EEEEESSCCCCBTTBCCCBCCCTTCCCCSEEEEEESCCSSTTC-CCCSBCEEEEEEEECHHHHHHHHCTTTSCTTEEEEC
T ss_pred             eeeccccccccCCceeeeeccccCcccccceeeccccccCCCC-cCCchheEEEEEEeCHHHHhhhccCCcccCceeEee
Confidence            9999999999999999999999888888899999999887655 5567799999999999999987654  667789998


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      ......+.|.||+||||++..++  +|+|+||+|+|..|+..+.|.+||+|++|++||++++
T Consensus       177 ~~~~~~~~~~gdsG~Pl~~~~~~--~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         177 VPEGGKDSCQGDSGGPLAASDTG--STYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             CTTCCCBCCTTCTTCEEEECTTS--SCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             cCCCccccccCCCCCeEEEecCC--eEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            87777889999999999987544  8999999999999998888999999999999999865

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-42  Score=324.74  Aligned_cols=228  Identities=28%  Similarity=0.578  Sum_probs=187.5

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|.+..                                                          
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----------------------------------------------------------   22 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDD----------------------------------------------------------   22 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEECC----------------------------------------------------------
Confidence            6899999999999999997532                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCC--ceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccce
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGK--PRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDI  348 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~--~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DI  348 (525)
                             .++|+||||+++||||||||+......  ...+..+............ ...+.++++||.|+.  ....+||
T Consensus        23 -------~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~hp~~~~--~~~~~di   93 (235)
T d1ekbb_          23 -------QQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNK--RRKNNDI   93 (235)
T ss_dssp             -------EEEEEEEECSSSEEEECHHHHTTCCSSGGGEEEEESCCBTTCCCCTTCEEEEEEEEEECTTCBT--TTTBSCC
T ss_pred             -------CEEEEEEEEcCCEEEEChhhccCCCCCccceeeeecccccccccCcceeEeeeeeeeecccccc--cCccchh
Confidence                   578999999999999999999765333  3345555442222222223 344999999999998  6778999


Q ss_pred             EEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLC  424 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~C  424 (525)
                      |||+|++|+.|+++++|||||....  ..+..+.++||+...... .....|+...+.+.+.+.|......  ..+.++|
T Consensus        94 Ali~L~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~c  172 (235)
T d1ekbb_          94 AMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQG-STADVLQEADVPLLSNEKCQQQMPEYNITENMVC  172 (235)
T ss_dssp             EEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEBCCHHHHHHHCTTSCCCTTEEE
T ss_pred             hhhhhcCceecCCceeeEECCCccccCCcceEEEEecccccccCC-cccccceeeEEEEecHHHhcccccccccCcccEE
Confidence            9999999999999999999987654  456788999999887655 4566789999999999999876654  5677899


Q ss_pred             EEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         425 ATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       425 a~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      +....+..+.|.||+||||++..++  +|+|+||+|+|..|+..+.|++||+|.+|++||+++|+
T Consensus       173 ~~~~~~~~~~c~gdsG~pl~~~~~~--~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         173 AGYEAGGVDSCQGDSGGPLMCQENN--RWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             ECCTTCCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             EEcCCCCcccccCCCCCccEEccCC--EEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhhC
Confidence            9887777789999999999987765  99999999999999888899999999999999999874

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-42  Score=323.78  Aligned_cols=231  Identities=31%  Similarity=0.608  Sum_probs=190.2

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..+||||+|.|+.....                                                        
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~--------------------------------------------------------   24 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSPT--------------------------------------------------------   24 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSS--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEECCCC--------------------------------------------------------
Confidence            689999999999999999765422                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCC-CceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLG-KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+..... ..+.+..+...............|..++.||.|+.  ....+||||
T Consensus        25 ------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~~~~--~~~~~diAl   96 (237)
T d1xx9a_          25 ------QRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKM--AESGYDIAL   96 (237)
T ss_dssp             ------EEEEEEEEEEETTEEEECGGGGTTCSCGGGEEEEESCSBGGGCCTTCCCEEEEEEEECTTCSC--TTTSCCCEE
T ss_pred             ------ccEEEEEEEEeCCEEEeCeEeeecccCccceeeecccccccccccceEEEEeeEEEEeccccc--ccccceeEE
Confidence                  367899999999999999999976532 33444444442223333344555999999999998  678899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~  426 (525)
                      |+|++|+.+.+.++|||++....  .....+.+.||+...... .....++...+.+++.++|...+..  +.+.++|++
T Consensus        97 l~L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~c~~  175 (237)
T d1xx9a_          97 LKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRD-KIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG  175 (237)
T ss_dssp             EEESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCCSSTTC-CCCSBCEEEECCEECHHHHHHHTTTSCCCTTEEEEC
T ss_pred             EEeccccccccccceEEecccccccccccccEEEEeecccccc-cCCCccEEEEEEEeCHHHHhhhhcCCCCCCceEEEe
Confidence            99999999999999999987665  345678899999766554 5667789999999999999887654  567899998


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ......+.|.||+||||++..++  +|+|+||+|++.+|+..+.|++|+||++|++||+++++
T Consensus       176 ~~~~~~~~c~gdsG~pl~~~~~~--~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         176 YREGGKDACKGDSGGPLSCKHNE--VWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             CTTCCCBCCTTCTTCEEEEEETT--EEEEEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHC
T ss_pred             cCCCCcccccCCccceeEEecCC--EEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHC
Confidence            77777889999999999987655  99999999999999888899999999999999999885

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=2.1e-42  Score=323.09  Aligned_cols=226  Identities=31%  Similarity=0.533  Sum_probs=188.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|.+..                                                          
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~----------------------------------------------------------   22 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEE----------------------------------------------------------   22 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEcC----------------------------------------------------------
Confidence            6899999999999999997532                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+||||+++||||||||+.........+..+.  ............+..++.||.|..  ....+||||+
T Consensus        23 ------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~diAl~   92 (228)
T d1fxya_          23 ------NEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRN--TEQEEGGEAVHEVEVVIKHNRFTK--ETYDFDIAVL   92 (228)
T ss_dssp             ------SCEEEEEEECSSSEEEECGGGTTSCSSCEEEEECSC--TTTCCCCEEEEEEEEEEECTTCBT--TTTBTCCEEE
T ss_pred             ------CCeEEEEEEeeCCEEEECceeeeccccccccccccc--ccccCCcceeeeeeccceeeeeec--cccccceeeh
Confidence                  257899999999999999999987533333332221  112222223333778889999987  6778999999


Q ss_pred             EECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCC
Q psy3170         352 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAG  430 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~  430 (525)
                      +|++++.++++++|||||.........+.++|||.+.......+..|++..+.+++.++|++.+.. +.+.++|++....
T Consensus        93 ~l~~~~~~~~~~~picL~~~~~~~~~~~~~~gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~  172 (228)
T d1fxya_          93 RLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEG  172 (228)
T ss_dssp             EESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTTTCCTTEEEESCTTC
T ss_pred             hcccccccccccccccccccccccccEEEEEecccccCCCCCCCchhEEEEEEEeCHHHHhhhcCCcccceeeEeecCCC
Confidence            999999999999999999988888899999999988776656677899999999999999988765 6678899987777


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      ..+.|.||+||||++      +++|+||+|++..|+..+.|.+||||++|++||+++|+.+
T Consensus       173 ~~~~~~gd~G~Pl~~------~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~i~~~  227 (228)
T d1fxya_         173 GKDSCQGDSGGPVVC------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN  227 (228)
T ss_dssp             SCBCCTTCTTCEEEE------TTEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CcccccCccCccEEE------eCEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHhc
Confidence            889999999999998      6789999999999987788999999999999999999754

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-42  Score=319.35  Aligned_cols=197  Identities=31%  Similarity=0.584  Sum_probs=166.1

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+..    ...+++|...............+.++++||+|+.  ....+|||||+|+.++.
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~----~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~y~~--~~~~~diAll~l~~~~~   96 (221)
T d1lo6a_          23 HLLCGGVLIHPLWVLTAAHCKKP----NLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDA--ASHDQDIMLLRLARPAK   96 (221)
T ss_dssp             EEEEEEEEEETTEEEECGGGCCT----TCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEEEEESSCCC
T ss_pred             cEEEEEEEEeCCEEEECeecccc----ccceeeceeeecccCccceeeeccccccCCCccc--ccccceeEEeecccccc
Confidence            68899999999999999999864    4678888773222222333444889999999988  77889999999999999


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCcC
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~g  437 (525)
                      +++.++|+|||......+..+.++|||.....  ..+..|+...+.+++.++|++.+.. ..+.++|+.....+...|.|
T Consensus        97 ~~~~v~pi~l~~~~~~~~~~~~~~Gwg~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~g  174 (221)
T d1lo6a_          97 LSELIQPLPLERDCSANTTSCHILGWGKTADG--DFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQG  174 (221)
T ss_dssp             CBTTBCCCCBCCCTTCCCCEEEEEESSCCTTS--SCCSBCEEEEEEEECHHHHHHHSTTTCCTTEEEEECTTTCCBCCTT
T ss_pred             eeeeEEeccccccCCcccceEEEEecccccCC--CCCccceEEEEEEecHHHHHHHcCCCccCCceeeeccccCCCCccC
Confidence            99999999999888788899999999987654  3567899999999999999998765 45667777666677889999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      |+||||++      +++|+||+|||. +|+..+.|++||||++|++||+++|+
T Consensus       175 d~G~Pl~~------~~~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         175 DSGGPLVC------GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             TTTCEEEE------TTEEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCCcEEE------CCEEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            99999987      468999999985 68878889999999999999999874

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-42  Score=321.38  Aligned_cols=198  Identities=27%  Similarity=0.496  Sum_probs=161.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.+.   ...+.++.. ......... ...+..+.+||.|..  ....+|||||+|++|+
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~i~~hp~y~~--~~~~~diAll~l~~~~   96 (232)
T d1orfa_          23 KTICAGALIAKDWVLTAAHCNLNK---RSQVILGAH-SITREEPTKQIMLVKKEFPYPCYDP--ATREGDLKLLQLTEKA   96 (232)
T ss_dssp             SCEEEEEEEETTEEEECTTCCCCT---TCEEEESCS-BSSSCCTTCEEECEEEEEECTTCCT--TTCTTCCEEEEESSCC
T ss_pred             CEEEEEEEecCCEEEEChhhcCCC---Ccceeeeee-eccccccccccceEEEEEecccccc--cccCcceeEeeeccce
Confidence            578999999999999999999763   233344433 222222233 334889999999998  7788999999999999


Q ss_pred             ccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-----CCCCcEEEEeCCC
Q psy3170         358 EFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-----LISSQLCATVMAG  430 (525)
Q Consensus       358 ~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-----~~~~~~Ca~~~~~  430 (525)
                      .+++.++|+|+|....  ..+..+.++|||.+.... ..+..|+...+.+++.++|+..+..     +.+.++|++....
T Consensus        97 ~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~  175 (232)
T d1orfa_          97 KINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSA-SWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRG  175 (232)
T ss_dssp             CCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECSSC
T ss_pred             eeeeeEeeeeecccccccccCceeeeccccccCCcc-cCChhheEEEeecCCHHHHhhhhhcccCccccCceEEeccCCC
Confidence            9999999999987654  456788999999887655 5667899999999999999875432     5678999988777


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcC-Cchhhhccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVS-YYVPWIVHTVW  489 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~-~~~~WI~~~i~  489 (525)
                      ..+.|.||+||||++      +++|+||+|||.  .|+..+.|++||||+ .|++||+++|+
T Consensus       176 ~~~~c~gdsG~Pl~~------~~~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~  231 (232)
T d1orfa_         176 GRDSCNGDSGSPLLC------EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK  231 (232)
T ss_dssp             CCBCCTTCTTCEEEE------TTEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHC
T ss_pred             CcccccccCCCeEEE------cCEEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhC
Confidence            789999999999988      578999999984  587778899999997 79999999885

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-42  Score=322.78  Aligned_cols=230  Identities=32%  Similarity=0.598  Sum_probs=187.8

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|.|....                                                          
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----------------------------------------------------------   22 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALG----------------------------------------------------------   22 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEECC----------------------------------------------------------
Confidence            6899999999999999987532                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCC------CceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCc
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLG------KPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQ  344 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~------~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~  344 (525)
                            ..++|+||||+++||||||||+.+...      ....+..+............+ ..|.++++||+|+.  ...
T Consensus        23 ------~~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~   94 (241)
T d1eaxa_          23 ------QGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFND--FTF   94 (241)
T ss_dssp             ------TEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTCEEEEEEEEEECTTCCT--TTC
T ss_pred             ------CCEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCcEEEEEEEEEECCcccc--ccc
Confidence                  257899999999999999999976421      223444444322222222333 44999999999998  677


Q ss_pred             ccceEEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCC
Q psy3170         345 YHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISS  421 (525)
Q Consensus       345 ~~DIAll~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~  421 (525)
                      .+|||||+|+.|+.|.+.++|+|||....  ..+..+...||+...... .....|+...+.+++.+.|+..+.. +..+
T Consensus        95 ~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~  173 (241)
T d1eaxa_          95 DYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGG-TGALILQKGEIRVINQTTCENLLPQQITPR  173 (241)
T ss_dssp             TTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEECCHHHHHHHSTTTCCTT
T ss_pred             CCcccccccCCceecCcccceeeccccccccccceeEEEeccCCccccc-cccccceEEEEEEeCHHHHHHHhCccccCc
Confidence            89999999999999999999999987654  455677888888776554 5667799999999999999998876 6788


Q ss_pred             cEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         422 QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       422 ~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ++|++...++.+.|.||+||||++...++ +|+|+||+|++.+|+..+.|.+|+||++|.+||++++.
T Consensus       174 ~~c~~~~~~~~~~c~gd~G~pl~~~~~~g-~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~g  240 (241)
T d1eaxa_         174 MMCVGFLSGGVDSCQGDSGGPLSSVEADG-RIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             EEEEECTTCSSBCCTTCTTCEEEEECTTS-CEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             cceeccCCCCcccccCcccceeEEEcCCC-eEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            99998877788999999999999876543 89999999999999888899999999999999999763

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.2e-42  Score=320.25  Aligned_cols=222  Identities=32%  Similarity=0.471  Sum_probs=186.0

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|.+.....                                                       
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~~~-------------------------------------------------------   25 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDEYS-------------------------------------------------------   25 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECTTC-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEEeCCC-------------------------------------------------------
Confidence            6899999999999999997654321                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+..    ...|++|.. ......... ...|.++++||.|+.  ....+||||
T Consensus        26 ------~~~~C~GtLI~~~~VLTaAhC~~~----~~~v~~G~~-~~~~~~~~~~~~~v~~i~~~~~~~~--~~~~~dial   92 (227)
T d1fi8a_          26 ------GSKKCGGFLIREDFVLTAAHCSGS----KIQVTLGAH-NIKEQEKMQQIIPVVKIIPHPAYNS--KTISNDIML   92 (227)
T ss_dssp             -------CCEEEEEEEETTEEEECGGGCCS----EEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCBT--TTTBSCCEE
T ss_pred             ------CceEEEEEEEeCCEEEEecccccc----cceeeeeec-ccccCCCCceEEEEEEEEecccccC--ccccchhhh
Confidence                  357899999999999999999853    467888877 333333333 444999999999998  788899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~  426 (525)
                      |+|++|+.|+++++|||++....  ..+..+...|||...... ..+..++...+.+++.+.|...+..  .....+|+.
T Consensus        93 l~l~~~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~l~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  171 (227)
T d1fi8a_          93 LKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMG-KYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAG  171 (227)
T ss_dssp             EEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTC-CBCSBCEEEEEEBCCHHHHHHHTTTTCCTTTEEEES
T ss_pred             hhccCceeeeeeEEEEEecccCcccCCCCEEEEEeeccccCCC-CCCceeeEEEEEEEEchhhhhhhhcccccceeeeee
Confidence            99999999999999999987654  566789999999877665 5677899999999999999987655  456677887


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ......+.|.||+||||++      +++|+||+|+|..|+  +.|.+||||++|++||+++|++
T Consensus       172 ~~~~~~~~c~gdsGgPl~~------~~~l~Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  227 (227)
T d1fi8a_         172 DPKIKRASFRGDSGGPLVC------KKVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMKK  227 (227)
T ss_dssp             CTTSCCBCCTTCTTSEEEE------TTEEEEEEEEEETTC--CSCEEEEEGGGGHHHHHHHHCC
T ss_pred             eccccCCCcCCCcCCEEEE------CCEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHHcC
Confidence            7667788999999999988      679999999998885  5799999999999999999863

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1.1e-41  Score=317.00  Aligned_cols=198  Identities=28%  Similarity=0.568  Sum_probs=164.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.+.  ....+  ... ......... ...+.+++.||.|..  ....+|||||+|++|+
T Consensus        22 ~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~diALl~l~~~v   94 (222)
T d1hj8a_          22 YHFCGGSLVNENWVVSAAHCYKSR--VEVRL--GEH-NIKVTEGSEQFISSSRVIRHPNYSS--YNIDNDIMLIKLSKPA   94 (222)
T ss_dssp             SEEEEEEEEETTEEEECGGGCCSS--CEEEE--SCS-BTTSCCSCCEEEEEEEEEECTTCBT--TTTBSCCEEEEESSCC
T ss_pred             CEEEEEEEeeCCEEEeCceecccc--cCcce--eec-cccccCCccccccceEEEecccccc--cccCCcEEEEecccce
Confidence            478999999999999999999763  22222  111 111222222 333778889999987  6778999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .+++.++|||||......+..+.+.|||...... .....|+...+.+++.++|+..+.. +.+.++|++...++.+.|.
T Consensus        95 ~~~~~~~picl~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~~~~~~~c~  173 (222)
T d1hj8a_          95 TLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSST-ADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ  173 (222)
T ss_dssp             CCSSSCCCCBCCSSCCCTTCEEEEEESSCCCCSS-CCTTBCEEEEEEBCCHHHHHHHSTTCCCTTEEEESCTTSSCBCCT
T ss_pred             eeeceeEEEECCCcCCCCCceEEEEecccccccc-ccccccEEEEEEEeCHHHHhhhcccccccceEEEccCCCCccccc
Confidence            9999999999998888888999999999876654 5667889999999999999988765 7788999988777788999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ||+||||++      +++|+||+|++..|+..+.|.+||||++|++||+++|+.
T Consensus       174 gdsGgPl~~------~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~~  221 (222)
T d1hj8a_         174 GDSGGPVVC------NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             TCTTCEEEE------TTEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCcccEEEE------CCEEEEEEEEecCCCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence            999999987      578999999999998888999999999999999999864

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-41  Score=319.63  Aligned_cols=228  Identities=29%  Similarity=0.582  Sum_probs=187.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..+||||+|+|....                                                          
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~----------------------------------------------------------   22 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSK----------------------------------------------------------   22 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEECC----------------------------------------------------------
Confidence            6899999999999999996432                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+|+||+++||||||||+.+  .....|++|...............|.++++||.|..  ....+|||||
T Consensus        23 ------~~~~C~GtLIs~~~VLTaAhCv~~--~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~~~~DiAli   92 (240)
T d1autc_          23 ------KKLACGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSK--STTDNDIALL   92 (240)
T ss_dssp             ------SCEEEEEEEEETTEEEECGGGSSS--CSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBT--TTTBTCCEEE
T ss_pred             ------CCEEEEEEEEeCCEEEECceeccC--cccceeeccccccccccccceeeeeeccccceeeec--cccccceeEE
Confidence                  368899999999999999999976  456788999873322233333344999999999988  6788999999


Q ss_pred             EECCCcccCCCccceecCCCC------CCCCCcEEEEEeeeccCCCC----cccccceEEEEEeeChhhhhcccCC-CCC
Q psy3170         352 KIAPPVEFSETLKPACLNRAH------NVKSPTAIASGFGKLNYFDT----KESLRLMKVVLDIINNDTCSKQETT-LIS  420 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~------~~~~~~~~~~Gwg~~~~~~~----~~~~~l~~~~v~~~~~~~C~~~~~~-~~~  420 (525)
                      ||++|+.|+++++|+|||...      ...+..+.++|||.......    .....++...+++++.+.|...+.. ...
T Consensus        93 ~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
T d1autc_          93 HLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSE  172 (240)
T ss_dssp             EESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCSSCCCT
T ss_pred             EeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccceeeecceeeEEeehhhhhhccccccc
Confidence            999999999999999998654      24667899999997654332    2344577888899999999887765 345


Q ss_pred             CcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         421 SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       421 ~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ..+|+.....+.+.|.||+||||++..++  +|+|+||+|+|..|+..+.|.+||||++|++||+++|+
T Consensus       173 ~~~~~~~~~~~~~~~~gd~G~pl~~~~~~--~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI~~~i~  239 (240)
T d1autc_         173 NMLCAGILGDRQDACEGDSGGPMVASFHG--TWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (240)
T ss_dssp             TEEEECCTTCCCBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             ceeeeccccccCCCcCCccCceeEEcCCC--CEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            56666666667889999999999987765  99999999999999878899999999999999999986

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=1.1e-41  Score=317.49  Aligned_cols=222  Identities=33%  Similarity=0.492  Sum_probs=187.5

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|.+....                                                        
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~--------------------------------------------------------   24 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTEK--------------------------------------------------------   24 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTT--------------------------------------------------------
T ss_pred             CCCCEECcCCCCCCEEEEEEEeCC--------------------------------------------------------
Confidence            689999999999999999876432                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                           +..++|+||||+++||||||||+.    ....|++|...............|.++++||+|+.  ....+|||||
T Consensus        25 -----~~~~~C~GtLIs~~~VLTaA~C~~----~~~~v~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~diall   93 (224)
T d3rp2a_          25 -----GLRVICGGFLISRQFVLTAAHCKG----REITVILGAHDVRKRESTQQKIKVEKQIIHESYNS--VPNLHDIMLL   93 (224)
T ss_dssp             -----SCEEEEEEEESSSSEEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCS--SSCCSCCEEE
T ss_pred             -----CCeEEEEEEEEcCCeeEecccccc----cccEEEeccccccCccccceeeeEEEEEecccccc--cccccceeee
Confidence                 146899999999999999999984    45788888773333333334445999999999998  7788999999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCC
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMA  429 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~  429 (525)
                      +|++|+.|+++++|+||+....  ..+..+.+.||+...... .....|++..+++++.+.|.+.+......++|+....
T Consensus        94 ~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~  172 (224)
T d3rp2a_          94 KLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD-PTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPT  172 (224)
T ss_dssp             EESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTE-EECSBCEEEEEEEECGGGTTTTTCCCTTTEEEECCTT
T ss_pred             eecceeEeccccceEEecccccccCCCcEEEEeeeeeeecCC-CccceeeEEEEEccCHHHhhhcccccccceeeeccCc
Confidence            9999999999999999987654  456788899999877655 5566799999999999999988877778899998777


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .....|.+|+||||++      +++|+||+|||..|.  +.|.+||||++|.+||+++|+
T Consensus       173 ~~~~~c~~d~G~Pl~~------~~~l~Gi~S~g~~~~--~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         173 TLRAAFMGDSGGPLLC------AGVAHGIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             SCCBCCTTTTTCEEEE------TTEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHC
T ss_pred             ccccCcCCCcCCeEEE------cCEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            7788999999999998      679999999998775  469999999999999999873

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=320.10  Aligned_cols=230  Identities=33%  Similarity=0.578  Sum_probs=185.0

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|.|.+....                                                        
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~--------------------------------------------------------   24 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHGPY--------------------------------------------------------   24 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECSSS--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEECCCc--------------------------------------------------------
Confidence            689999999999999999764322                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+||||+++||||||||+.........++++.. ........+...|.++++||.|+.  ....||||||
T Consensus        25 ------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~hp~~~~--~~~~~diAli   95 (243)
T d2fpza1          25 ------WMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLR-EQHLYYQDQLLPVSRIIVHPQFYT--AQIGADIALL   95 (243)
T ss_dssp             ------CEEEEEEEEEETTEEEECHHHHCSBCCCGGGEEEECC-CSBTTTTCCCEEEEEEEECTTCSC--TTTSCCCEEE
T ss_pred             ------ccEEEEEEEEeCCEEEECceeccCCCCcceeEEEEee-ecccccccEEEeeeeeeccccccc--cccccchhhh
Confidence                  3678999999999999999999876555555555544 233333344556999999999988  6777999999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCC-cccccceEEEEEeeChhhhhcccCC----------C
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDT-KESLRLMKVVLDIINNDTCSKQETT----------L  418 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~-~~~~~l~~~~v~~~~~~~C~~~~~~----------~  418 (525)
                      +|++|+.++++++|+|||....  ..+....+.+||....... ..+..|+...+++++...|.+.+..          .
T Consensus        96 ~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~  175 (243)
T d2fpza1          96 ELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIV  175 (243)
T ss_dssp             EESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHHTTBCSCTTSCSS
T ss_pred             cccCccccceeEEEeecCchhhccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHHHhhhhhhcccccCCcccee
Confidence            9999999999999999987654  4567888999997765542 3456789999999999999866421          2


Q ss_pred             CCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         419 ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       419 ~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ...++|.+  ..+...|.||+||||++..++  +|+|+||+|++..|+..+.|.+||||++|++||+++|++
T Consensus       176 ~~~~~~~~--~~~~~~~~gdsGgpl~~~~~~--~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~~WI~~~i~~  243 (243)
T d2fpza1         176 RDDMLCAG--NTRRDSCQGDSGGPLVCKVNG--TWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPK  243 (243)
T ss_dssp             CTTEEEEC--CSSSBCCTTCTTCEEEEEETT--EEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHTTTSCC
T ss_pred             eeeeEecC--CCCCCCccCCCCCeEEEeeCC--EEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhCC
Confidence            23344543  456789999999999987765  899999999999998788899999999999999999863

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-41  Score=322.64  Aligned_cols=233  Identities=28%  Similarity=0.509  Sum_probs=183.6

Q ss_pred             CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceee
Q psy3170         189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF  268 (525)
Q Consensus       189 ~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (525)
                      .+||+||.+|..++|||+|+|.+...+                                                     
T Consensus        11 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~-----------------------------------------------------   37 (251)
T d1pytd_          11 SARVVGGEDAIPHSWPWQISLQYLRDN-----------------------------------------------------   37 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETT-----------------------------------------------------
T ss_pred             CCeEECCEECCCCCCCcEEEEEEEeCC-----------------------------------------------------
Confidence            578999999999999999999765422                                                     


Q ss_pred             eecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccce
Q psy3170         269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI  348 (525)
Q Consensus       269 ~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DI  348 (525)
                              ...++|+|+||+++||||||||+..... ......................|.++++||.|..  ....+||
T Consensus        38 --------~~~~~C~G~LIs~~~VLTaAhC~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~h~~y~~--~~~~~di  106 (251)
T d1pytd_          38 --------TWRHTCGGTLITPNHVLTAAHCISNTLT-YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNS--FLVRNDI  106 (251)
T ss_dssp             --------EEEEEEEEEEEETTEEEECGGGCCTTCC-EEEEESCSBTTCSCCSSCEEEEEEEEEECTTCBT--TTTBSCC
T ss_pred             --------CceeEEeEEEEcCCeEEEeeeccccccc-ceeeeeeeeeecccCCCceEEeEEEEEEeeeecc--cccCCce
Confidence                    1468899999999999999999976422 1111111110111122223444999999999998  6788999


Q ss_pred             EEEEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcE
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQL  423 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~  423 (525)
                      |||+|.+|+.|++.++||||+....  ..+..+.+.||+.+...+ .....++...+..++..+|.+.+..   ....++
T Consensus       107 ali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~  185 (251)
T d1pytd_         107 ALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNG-PIAAELQQGLQPVVDYATCSQRDWWGTTVKETMV  185 (251)
T ss_dssp             EEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCS-CCCSBCBCCEEECBCHHHHTSTTTTTTTCCTTEE
T ss_pred             eeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCccccCCC-cccceeceeeccccCHHHHhhhhcccccccCceE
Confidence            9999999999999999999988765  456778899999877655 4556677777889999999876543   556678


Q ss_pred             EEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         424 CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       424 Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      |+.. .+..+.|.||+||||++..++  +|+|+||+||+.  .|+..+.|.+|+||++|++||+++|+
T Consensus       186 c~~~-~~~~~~c~gd~G~Pl~~~~~~--~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         186 CAGG-DGVISACNGDSGGPLNCQADG--QWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             EECC-SCSSCCCCSCTTCEEEEESSS--SEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             Eecc-CCCCccccCCCCCceEEeeCC--EEEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHHhcc
Confidence            8865 456789999999999987665  899999999985  57777889999999999999999985

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-41  Score=317.48  Aligned_cols=202  Identities=34%  Similarity=0.611  Sum_probs=168.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEE-EEEEEeCCCCCCC---------CCCcccce
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTTE---------GTSQYHDI  348 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~-v~~i~~hp~y~~~---------~~~~~~DI  348 (525)
                      .++|+||||+++||||||||+..    ...+++|.. .........+.. +.+++.||.|+..         .....+||
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~----~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di   97 (237)
T d1ao5a_          23 EHICGGVLLDRNWVLTAAHCYVD----QYEVWLGKN-KLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDL   97 (237)
T ss_dssp             EEEEEEEEEETTEEEECTTCCCS----SCEEEESCC-BSSSCCSSCEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCC
T ss_pred             cEEEEEEEeeCCEEEECHHHcCC----CceEEEEec-cccccccccEEEEEEEEeecccccccccccccccCccccccce
Confidence            68999999999999999999964    356778776 333333334444 8999999998642         12345899


Q ss_pred             EEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEe
Q psy3170         349 ALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATV  427 (525)
Q Consensus       349 All~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~  427 (525)
                      |||||++|+.+++.++|+|||.........+.++|||.........+..+....+..++...|...... +.+.++|+..
T Consensus        98 All~L~~~i~~~~~~~~i~lp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  177 (237)
T d1ao5a_          98 MLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLCAGE  177 (237)
T ss_dssp             EEEEESSCCCCCSSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCSSCCCTTEEEEEC
T ss_pred             eeeccCcccccccccceeccCCCCCcccceEEEeeeeeeccccccCCccceeeEEEEEehHHhhhhhcCCCCCCeEEEcc
Confidence            999999999999999999999988888889999999987766656677888999999999999988765 6678999987


Q ss_pred             CCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         428 MAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       428 ~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      ...+.+.|.||+||||++      +++|+||+|||. .|+..+.|.+||||++|.+||+++|+++
T Consensus       178 ~~~~~~~c~gdsG~pl~~------~~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~~n  236 (237)
T d1ao5a_         178 MGGGKDTCRDDSGGPLIC------DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             TTCSCBCCTTCTTCEEEE------TTEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHHC
T ss_pred             CCCCCcccCCCCCCeeEE------ccEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHHhc
Confidence            767788999999999987      679999999985 5877788999999999999999999654

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=5.5e-42  Score=319.87  Aligned_cols=200  Identities=30%  Similarity=0.518  Sum_probs=168.5

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+..  .....+++|.. ......... ...|.++++||.|+.  ....+|||||+|++|+
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~--~~~~~~~~g~~-~~~~~~~~~~~~~v~~i~~~~~y~~--~~~~~diAll~l~~~~   97 (226)
T d1azza_          23 MYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAH-NIREDEATQVTIQSTDFTVHENYNS--FVISNDIAVIRLPVPV   97 (226)
T ss_dssp             TEEEEEEEEETTEEEECHHHHTT--CSCEEEEESCS-BSSSCCTTCEEEEECCEEECTTCBT--TTTBSCCEEEECSSCC
T ss_pred             cEEEEEEEeeCCEEEEChhhccC--CcceEEEeccc-eeccCCcceEEEEeeeeeecccccc--ccccchhhhhhcCCcc
Confidence            58899999999999999999976  35567777776 333333333 444999999999998  7788999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcC
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~g  437 (525)
                      .+++.++|+||+.........+.++|||............|++..+.+++.++|...+......++|... ..+.+.|.|
T Consensus        98 ~~~~~~~pi~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~-~~~~~~c~g  176 (226)
T d1azza_          98 TLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDS-TGGKGTCNG  176 (226)
T ss_dssp             CCCSSSCCCBCCSSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSCCCTTEEEECC-TTTCBCCTT
T ss_pred             ceeeccccccccccccccccceeeecccccCCCcCccccEeEEEEEEEEeHHHhhhhhCcccccceeccc-cCCCccccC
Confidence            9999999999999888888999999999887766566678999999999999999988776666666654 456789999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeecCCCC-CCCCceEEEEcCCchhhhcccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYGRQCG-HANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g~~c~-~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |+||||++      +++|+||+|++..|+ ..+.|++||||++|.+||+++|.-
T Consensus       177 dsG~Pl~~------~~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         177 DSGGPLNY------NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CTTCEEEE------TTEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             CcCCCEEE------cCEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence            99999987      679999999997664 467899999999999999999853

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-41  Score=314.61  Aligned_cols=199  Identities=30%  Similarity=0.562  Sum_probs=169.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      .++|+||||+++||||||||+.+    ...+++|.. ....... .....+..+.+||.|+.  ....+|||||+|++++
T Consensus        22 ~~~C~GtLIs~~~VLTaAhC~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~diAll~l~~~~   94 (223)
T d1hj9a_          22 YHFCGGSLINSQWVVSAAHCYKS----GIQVRLGED-NINVVEGNEQFISASKSIVHPSYNS--NTLNNDIMLIKLKSAA   94 (223)
T ss_dssp             SEEEEEEEEETTEEEECGGGCCS----SCEEEESCS-STTSCCSCCEEEEEEEEEECTTCCT--TTCTTCCEEEEESSCC
T ss_pred             CEEEEEEEeeCCEEEeCeeECCC----cCcceeccc-ccccccceeeeeceeeEEecccccc--ccccchhhhhhcccce
Confidence            47899999999999999999965    244566655 2222222 33344899999999998  6788999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .+++.++|+||+.........+.+.||+.+.......+..|+...+.+++.++|++.+.. +.+.++|+....+..+.|.
T Consensus        95 ~~~~~~~p~cl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~~~  174 (223)
T d1hj9a_          95 SLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQ  174 (223)
T ss_dssp             CCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEECCCHHHHHHHSTTTCCTTEEECCCCCCCCCCCT
T ss_pred             eeeeeeeccccccccccccceEEEEeeccccCCCCCCCccceEEEEeecCHHHHHHHhCCcccccceEEeecCCCccccc
Confidence            999999999999988888889999999987766556677899999999999999988765 6778899887777788999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ||+||||++      +++|+||+||+..|+..+.|++||||++|++||+++|++
T Consensus       175 gd~g~pl~~------~~~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T d1hj9a_         175 GDSGGPVVC------SGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TCTTCEEEE------TTEEEEEEEECSCCCCCCCCCEEEEGGGGHHHHHHHHTT
T ss_pred             CCCCceeEE------eCEEEEEEEEcCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence            999999987      578999999999998888999999999999999999975

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=317.10  Aligned_cols=227  Identities=33%  Similarity=0.580  Sum_probs=184.4

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..++|||+|+|....                                                          
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~----------------------------------------------------------   22 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEE----------------------------------------------------------   22 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTT----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEecC----------------------------------------------------------
Confidence            6899999999999999996432                                                          


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+||||+++||||||||+.+.  ....+..................+.++++||.|+.  ....+|||||
T Consensus        23 ------~~~~C~GtlIs~~~VLTaAhCv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~--~~~~~diAll   92 (233)
T d2p3ub1          23 ------NEGFCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTK--ETYDFDIAVL   92 (233)
T ss_dssp             ------SCEEEEEEECSSSEEEECGGGGGSC--SSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCCT--TTCTTCCEEE
T ss_pred             ------CCeEEEEEEEeCCEEEECceecccc--cccccccccccccccCCCceeecceeEEEeecccc--cccccceeee
Confidence                  2578999999999999999999763  33444333321222222333444999999999998  7788999999


Q ss_pred             EECCCcccCCCccceecCCCCC-----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEE
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN-----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCA  425 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~-----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca  425 (525)
                      +|++|+.++++++|+|||....     .....+.+.||+.....+ .....++...+.+++.+.|...+.. +...++|+
T Consensus        93 ~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~  171 (233)
T d2p3ub1          93 RLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKG-RQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCA  171 (233)
T ss_dssp             EESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTS-CBCSBCEEEEEEBCCHHHHHHHCSSCCCTTEEEE
T ss_pred             ecccceeecccccccccCCcccccccccccceEEEecCCccccCC-CccccccccccccccchhhhcccCceEeecceee
Confidence            9999999999999999987532     445667788888766544 5566788889999999999988765 45778888


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .........|.||+||||++..++  +|+|+||+||+..|+..+.|.+||+|++|.+||+++|+
T Consensus       172 ~~~~~~~~~~~gdsGgpl~~~~~~--~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         172 GYDTKQEDACQGDSGGPHVTRFKD--TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             SCSSSSCBCCTTTTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             ecccccCCCcCCCcccccEEecCC--eEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            776777889999999999997766  89999999999999888899999999999999999884

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-41  Score=313.72  Aligned_cols=219  Identities=28%  Similarity=0.472  Sum_probs=183.6

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|.|.+...+                                                        
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~~--------------------------------------------------------   24 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSPA--------------------------------------------------------   24 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSST--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCC--------------------------------------------------------
Confidence            789999999999999999765432                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+|+||+++||||||||+.    ....+.+|.. ....... .....|.+++.||.|..  ....+||||
T Consensus        25 ------~~~~C~GtlI~~~~VLTaAhC~~----~~~~v~~g~~-~~~~~~~~~~~~~v~~i~~~~~~~~--~~~~~diaL   91 (224)
T d1t32a1          25 ------GQSRCGGFLVREDFVLTAAHCWG----SNINVTLGAH-NIQRRENTQQHITARRAIRHPQYNQ--RTIQNDIML   91 (224)
T ss_dssp             ------TSCEEEEEEEETTEEEECGGGCC----SCEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCBT--TTTBTCCEE
T ss_pred             ------CCEEEEEEEEcCCEEEEeEEccc----ccccceeeee-eeeccccceeeecceeEEEeecccc--cccccceeE
Confidence                  35799999999999999999985    3477888876 3333332 33344999999999988  678899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEe
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATV  427 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~  427 (525)
                      ++|+.|+.++++++|+|||....  .....+...|||.....  .....+++..+.+++.++|.+.+.. ..+.++|+..
T Consensus        92 ~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~  169 (224)
T d1t32a1          92 LQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMR--RGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGD  169 (224)
T ss_dssp             EEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSSS--CCCSBCEEEEEEBCCHHHHHHHSTTCCTTTEEEECC
T ss_pred             EeeccccccCcccCccccccccccCCCCCEEEEecccccccC--CCcceeeeeeeeecCHHHHHhhcCcccccccceeec
Confidence            99999999999999999988765  44577888899876543  4567899999999999999988776 5678899987


Q ss_pred             CCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         428 MAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       428 ~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ...+.+.|.||+||||++      +++|+||+|+|..|+  ..|++||||+.|++||+++|+
T Consensus       170 ~~~~~~~c~gdsGgPl~~------~~~l~Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~  223 (224)
T d1t32a1         170 RRERKAAFKGDSGGPLLC------NNVAHGIVSYGKSSG--VPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             TTSSCBCCTTCTTCEEEE------TTEEEEEEEECCTTC--CSCEEEEEGGGSHHHHHHHHC
T ss_pred             ccccccccccCcCCeEEE------cCEEEEEEEEcCCCC--CCCcEEEEHHHhHHHHHHHHc
Confidence            777889999999999987      568999999998886  359999999999999999986

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-41  Score=319.72  Aligned_cols=213  Identities=30%  Similarity=0.534  Sum_probs=167.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCC----CCCCcccceEEEEEC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT----EGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~----~~~~~~~DIAll~L~  354 (525)
                      .++|+||||+++||||||||+.+.......+..+...............+.++..||.+..    +.....||||||+|+
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~  102 (255)
T d1z8ga1          23 AHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLS  102 (255)
T ss_dssp             EEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEES
T ss_pred             cEEEEEEEEeCCEEEECceecCCCCCccceeeEeeeeecccCCccEEEEEEEEEEEeeeccccccccCCccccEEEEecC
Confidence            5789999999999999999997754333444443331222222223334999999998431    115667999999999


Q ss_pred             CCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEEEeCC
Q psy3170         355 PPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCATVMA  429 (525)
Q Consensus       355 ~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca~~~~  429 (525)
                      +|+.++++++|+||+....  ..+..+.+.||+.....+ .....++...+++++.+.|+..+..   +.+.++|+....
T Consensus       103 ~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~  181 (255)
T d1z8ga1         103 SPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYG-QQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPE  181 (255)
T ss_dssp             SCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTS-CBCSBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTT
T ss_pred             CccccCcccccceecccCcccCCCcEEEeeccccccCCC-cccceeEEEEEEEeCHHHhhhhhccCccccCcceEEecCC
Confidence            9999999999999987654  456788899998776555 5667899999999999999876533   567788888777


Q ss_pred             CCcCCCcCCCCCcceeecC--CCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         430 GGKDTCQGDSGGPLQTIMP--DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~--~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      ++.+.|.||+||||++...  ...+|+|+||+||+.+|+....|.+||||++|++||+++|+...
T Consensus       182 ~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vft~V~~y~~WI~~~i~~~~  246 (255)
T d1z8ga1         182 GGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHS  246 (255)
T ss_dssp             CSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHHHHHHTT
T ss_pred             CCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHHHHHcC
Confidence            7788999999999998753  24589999999999999988899999999999999999997643

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-42  Score=321.93  Aligned_cols=205  Identities=30%  Similarity=0.515  Sum_probs=163.0

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCC--CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ++|+||||+++||||||||+.+.  ....+.+..|.. + ..........+.++++||.|+.. ....||||||||++|+
T Consensus        22 ~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~v~~i~~hp~y~~~-~~~~~DiAll~L~~~~   98 (242)
T d1q3xa1          22 TTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL-K-RLSPHYTQAWSEAVFIHEGYTHD-AGFDNDIALIKLNNKV   98 (242)
T ss_dssp             SSEEEEEETTTEEEECHHHHHHHHTTTCCCEEEESCS-B-TTCSCSEEEEEEEEEECTTCCTT-SCCTTCCEEEEESSCC
T ss_pred             CEEEEEEEcCCEEEEChhhccCCCCCcceEEEEeeee-e-eccccccccceeeeEEeeccccc-cccCccccccccCCCc
Confidence            56999999999999999998654  334555666644 1 12222344559999999999863 3357899999999999


Q ss_pred             ccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-------CCCCcEEEE
Q psy3170         358 EFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-------LISSQLCAT  426 (525)
Q Consensus       358 ~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-------~~~~~~Ca~  426 (525)
                      .|++++.|+|++....    ..+......||+.....  ..+..|+...+.+++.+.|.+.+..       +...++|++
T Consensus        99 ~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~  176 (242)
T d1q3xa1          99 VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG--FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAG  176 (242)
T ss_dssp             CCBTTBCCCBCCCGGGGGGSSTTCEEEEEESSCCTTS--SCCSBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEEC
T ss_pred             cccccEEEEeccccccccccccceeeeeeeccccccC--ccccceeeeeccccCHHHHHhhhhcccccCceeccceeeee
Confidence            9999999999987643    24456667777765443  3567899999999999999877643       445678888


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ...+..+.|.||+||||++...+.++|+|+||+|||. .|+..+.|++||||++|++||+++|+
T Consensus       177 ~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~  240 (242)
T d1q3xa1         177 LESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS  240 (242)
T ss_dssp             CSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             ccCCCccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHH
Confidence            7777788999999999999877666999999999985 68878899999999999999999985

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-41  Score=314.84  Aligned_cols=200  Identities=31%  Similarity=0.558  Sum_probs=160.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCC-CCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE-GTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~~DIAll~L~~~~  357 (525)
                      +++|+||||+++||||||||+...    ..+..................+..+..||.|... .....+|||||+|++|+
T Consensus        23 ~~~C~GtLIs~~~VLTaAhC~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~   98 (225)
T d1npma_          23 RLICGGVLVGDRWVLTAAHCKKQK----YSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSA   98 (225)
T ss_dssp             EEEEEEEEEETTEEEECGGGCCSS----CEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSCC
T ss_pred             cEEEEEEEEcCCEEEEchHhCccc----cccccccccccccCCCcceeeeeeeEEEEeeeccCcccchhhhhhhhccccc
Confidence            688999999999999999999753    2333333211122222223337777887766431 14667999999999999


Q ss_pred             ccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~~C~  436 (525)
                      .+++.++|+|||.........+.++|||.........+..|++..+.+++.+.|++.+.. +.++++|+... ++.+.|.
T Consensus        99 ~~~~~~~~i~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~C~~~~-~~~~~c~  177 (225)
T d1npma_          99 NLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSS-NGADTCQ  177 (225)
T ss_dssp             CCSSSSCCCEECSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHSTTTCCTTEEEEECT-TCCBCCT
T ss_pred             cccccccccccccccccCCceEEEeccceecCCCCCCCCccEEEEEEEecHHHHhhhccCCcCCCEEEecCC-CCCcccc
Confidence            999999999999988888889999999988766656678899999999999999988765 67889999864 4678999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ||+||||++      +++|+||+|+|. .|+..+.|++||||++|.+||+++|+
T Consensus       178 gd~G~pl~~------~~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         178 GDSGGPLVC------DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             TCTTCEEEE------TTEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCceEEE------ccEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            999999988      689999999995 48777889999999999999999873

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=3.5e-41  Score=313.32  Aligned_cols=199  Identities=28%  Similarity=0.515  Sum_probs=164.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.........+....  ............|.++++||.|..  ....+|||||+|++++.
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~h~~y~~--~~~~~diAll~L~~~~~   98 (222)
T d1eq9a_          23 SHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVG--TNYLSESGDVYDVEDAVVNKNYDD--FLLRNDVALVHLTNPIK   98 (222)
T ss_dssp             EEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEES--CSBTTSCCEEEEEEEEEECTTCBT--TTTBCCCEEEEESSCCC
T ss_pred             CEEEEEEEEeCCEEEECceeccccccccceeeecc--eeccccCcceeeeeeEEEeecccc--cccccceehhhccCCcc
Confidence            68899999999999999999987533333222221  222333344556999999999998  77889999999999999


Q ss_pred             cCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCcC
Q psy3170         359 FSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQG  437 (525)
Q Consensus       359 ~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~g  437 (525)
                      ++++++|+||+.... .....+.++||+.+...+ ..+..++...+..++...|...+....+.++|+.. .+..+.|.+
T Consensus        99 ~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~c~~~-~~~~~~c~~  176 (222)
T d1eq9a_          99 FNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGG-NTPNALQEIELIVHPQKQCERDQWRVIDSHICTLT-KRGEGACHG  176 (222)
T ss_dssp             CBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTC-CCCSBCEEEEEEEECHHHHHHHSSSCCTTEEEECC-CTTCBCCTT
T ss_pred             cccccccccccccccccccceeEEeeeeeecCCC-CCCccceEEEEEEechHHhccccccccCcceEecc-CCCCCcccc
Confidence            999999999987654 456788999999876655 56778999999999999999988778889999976 456789999


Q ss_pred             CCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         438 DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       438 DsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      |+||||++      +++|+||+|++..|+ .+.|.+||||++|++||+++|++
T Consensus       177 d~G~pl~~------~~~L~GI~s~~~~c~-~~~p~vyt~v~~y~~WI~~~i~~  222 (222)
T d1eq9a_         177 DSGGPLVA------NGAQIGIVSFGSPCA-LGEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             CTTCEEEE------TTEEEEEEEECSTTT-SSSCEEEEEGGGGHHHHHHTSCC
T ss_pred             CCcCCEEE------cCEEEEEEEECCCCC-CCCCcEEEEHHHHHHHHHHHhcC
Confidence            99999987      678999999999997 56799999999999999999863

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7e-41  Score=311.86  Aligned_cols=221  Identities=32%  Similarity=0.524  Sum_probs=180.1

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|.+...+                                                        
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~--------------------------------------------------------   24 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTSG--------------------------------------------------------   24 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSS--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCC--------------------------------------------------------
Confidence            689999999999999999876432                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+|+||+++||||||||+..    ....++|...............|+++++||+|+.  ....||||||
T Consensus        25 ------~~~~C~GtLIs~~~VLTaAhC~~~----~~~~~~~~~~~~~~~~~~~~~~V~~i~~hp~~~~--~~~~~DiAll   92 (224)
T d1eufa_          25 ------KSHICGGFLVREDFVLTAAHCLGS----SINVTLGAHNIMERERTQQVIPVRRPIPHPDYND--ETLANDIMLL   92 (224)
T ss_dssp             ------SEEEEEEEEEETTEEEECGGGCCE----EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEEE
T ss_pred             ------CcEEEEEEEEcCCEEEeeceeccc----ccceeeeeeeecccCCCcEEEEEEEEEECCcccc--ccccccceee
Confidence                  368999999999999999999854    3456666552222222233444999999999998  6778999999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCC-CCCcEEEEeC
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTL-ISSQLCATVM  428 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~-~~~~~Ca~~~  428 (525)
                      +|++|+.|++.+.|+|++....  ..+..+.+.|||...... .....++...+.+++.++|...+... ...+.|+...
T Consensus        93 ~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~  171 (224)
T d1eufa_          93 KLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNM-PSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDP  171 (224)
T ss_dssp             EESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTC-CBCSBCEEEEEEBCCTHHHHTTCTTCCTTTEEEESCT
T ss_pred             eccceeEEeeeEeeeeeecccccccCCceEEEecccceeccc-cccccceeeeeccCCHHHHHHHhccccccceeeeecc
Confidence            9999999999999999987654  456788899999877655 56667889999999999999887653 3445555555


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ..+...|.+|+||||++      +++|+||+|+|.+|+  ..|.+||||++|++||+++|+
T Consensus       172 ~~~~~~c~~dsGgpl~~------~~~l~Gi~s~g~~~~--~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         172 SKRKNSFSGDSGGPLVC------NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             TSCCBCCTTCTTCEEEE------TTEEEEEEEECCTTC--CSCEEEEEGGGTHHHHHHHTC
T ss_pred             ccccccccCCCCCeEEE------cCEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            56778999999999987      578999999998885  579999999999999999884

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-42  Score=321.37  Aligned_cols=205  Identities=27%  Similarity=0.411  Sum_probs=166.2

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCCC-----CCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCC-CCcccceEEEEE
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSPL-----GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-TSQYHDIALLKI  353 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-~~~~~DIAll~L  353 (525)
                      +.|+|+||+++||||||||+....     ...+.|++|.. ............|.++++||+|+... ....+|||||+|
T Consensus        22 ~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~-~~~~~~~~~~~~v~~i~vhp~y~~~~~~~~~~DiAll~L  100 (240)
T d2qy0b1          22 GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHT-NVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL  100 (240)
T ss_dssp             SEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCS-BHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEE
T ss_pred             ceEEEEEEcCCEEEEChHhCCCcccccccccceeeeeeec-cccccCCcceEEEEEEEeccccccccccccCCCceEEec
Confidence            569999999999999999997642     23467888876 33333333445599999999998732 245689999999


Q ss_pred             CCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC------CCCCcEEE
Q psy3170         354 APPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT------LISSQLCA  425 (525)
Q Consensus       354 ~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~------~~~~~~Ca  425 (525)
                      ++|+.++++++|||++....  ..+..+.+.|||....   ..+..++...+.+++.+.|...+..      +.+.++|+
T Consensus       101 ~~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~~~---~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~  177 (240)
T d2qy0b1         101 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE---KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCA  177 (240)
T ss_dssp             SSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSS---SCCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEE
T ss_pred             CCccccccccceEEecccccccccCceeeecccccccc---cccccceEEEEEEcCHHHHHHHhhccccCCceecceEEe
Confidence            99999999999999987654  4567889999998764   3456778889999999999875421      56789999


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .......+.|.||||+||++..++..+|+|+||+|+|.+|+  ..|++||+|++|.+||+++|++
T Consensus       178 ~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~--~~p~vft~v~~~~~WI~~~i~~  240 (240)
T d2qy0b1         178 GHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCS--RGYGFYTKVLNYVDWIKKEMEE  240 (240)
T ss_dssp             SCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSS--SSCEEEEEGGGGHHHHHHHTTC
T ss_pred             ccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHhcC
Confidence            87777788999999999999887766899999999999997  3489999999999999999863

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=317.80  Aligned_cols=204  Identities=28%  Similarity=0.490  Sum_probs=160.1

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc--c-eEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD--N-IHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~--~-~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      +++|+||||+++||||||||+.+.....+.|++|.. +.......  . ...+..+..||.        .+|||||||++
T Consensus        22 ~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~DIAll~L~~   92 (234)
T d1si5h_          22 KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIH-DVHGRGDEKCKQVLNVSQLVYGPE--------GSDLVLMKLAR   92 (234)
T ss_dssp             SEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCS-BSSCSTTTTTCEEEEEEEEEECSS--------TTCEEEEEESS
T ss_pred             cEEEEEEEEeCCEEEECcCccCCCCCccceEEEEee-cccccccceeEEEEeeccccCCCc--------ccceEEEeecc
Confidence            578999999999999999999877677888999876 22222111  1 112444444543        37999999999


Q ss_pred             CcccCCCccceecCCCCCCC--CCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEEEeCCC
Q psy3170         356 PVEFSETLKPACLNRAHNVK--SPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCATVMAG  430 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~~~--~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca~~~~~  430 (525)
                      |+.++++++|||||......  ...+.+.||+.....  .....|+...+.+++.+.|...+..   +.+.++|+....+
T Consensus        93 ~v~~~~~v~picl~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  170 (234)
T d1si5h_          93 PAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLI--NYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKI  170 (234)
T ss_dssp             CCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCS--SCCCBCEEEEEEEECGGGTCC-------CCTTEEEEECSSS
T ss_pred             CccccccccccccccccccCCcceeEEEecccccccc--cccceeEEEEeeccchhHhhhhhccccccCCccEEEccCCc
Confidence            99999999999999876644  445556666544332  4567789999999999999876643   5688999987777


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccCC
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPN  495 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~~  495 (525)
                      +.+.|.||+||||++..++  +|+|+||+|++..|+..+.|.+||||++|++||+++|+....|.
T Consensus       171 ~~~~c~gdsG~pl~~~~~~--~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~~~~~~~  233 (234)
T d1si5h_         171 GSGPCEGDYGGPLVCEQHK--MRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQ  233 (234)
T ss_dssp             CCBCCTTCTTCEEEEECSS--SEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSCCCCC
T ss_pred             CCCCCcCccccceEEecCC--eEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhhcCCCCC
Confidence            7899999999999987654  89999999999999878899999999999999999998876664

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=6.3e-41  Score=312.16  Aligned_cols=197  Identities=30%  Similarity=0.538  Sum_probs=161.4

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.........+..+..   ..........+..++.||.|..    ..+|||||+|++|+.
T Consensus        23 ~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~h~~~~~----~~~DiAll~L~~~v~   95 (224)
T d1gdna_          23 GPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSL---SRTSGGITSSLSSVRVHPSYSG----NNNDLAILKLSTSIP   95 (224)
T ss_dssp             EEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCS---BSSSSSEEEEEEEEEECTTCBT----TBSCCEEEEESSCCC
T ss_pred             CEEEEEEEEeCCEEEECcccceeccccccceeeccc---cccCCcceEEEEEEEeeecccc----ccceeEEEeeccccc
Confidence            688999999999999999999876555555555433   2233334444888899998855    458999999999999


Q ss_pred             cCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCCcCC
Q psy3170         359 FSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKDT  434 (525)
Q Consensus       359 ~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~~~~  434 (525)
                      +++.++|+|++....  ..+..+.+.|||.+.......+..|+...+++++.++|+..+..  +.+.++|+....++.+.
T Consensus        96 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~v~~i~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~  175 (224)
T d1gdna_          96 SGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDS  175 (224)
T ss_dssp             CBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTSCTTEEEECCTTCCCBC
T ss_pred             cccccceeeccccccccccceeeeeeccCccccCCCcCCCEeeeeEEEEeCHHHHhcccccCccccceeeeecCCCCccc
Confidence            999999999987654  45788999999988766555677899999999999999887654  45667777776777889


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      |.|||||||++     ++|+|+||+|||..|+.++.|.+||||++|++||++.
T Consensus       176 c~~dsG~pl~~-----~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         176 CQGDSGGPIVD-----SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             CTTCTTCEEEC-----TTCCEEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred             cccccCCceEe-----cCCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence            99999999985     1678999999999999888999999999999999753

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=310.14  Aligned_cols=220  Identities=30%  Similarity=0.478  Sum_probs=183.0

Q ss_pred             cCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeecCC
Q psy3170         194 GGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEEGG  273 (525)
Q Consensus       194 ~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (525)
                      ||.+|.++||||+|+|.+....                                                          
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~~----------------------------------------------------------   22 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTSN----------------------------------------------------------   22 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECTT----------------------------------------------------------
T ss_pred             CCcCCcCCCCCCEEEEEEEeCC----------------------------------------------------------
Confidence            7999999999999999875432                                                          


Q ss_pred             ccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEEEE
Q psy3170         274 TMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIALLK  352 (525)
Q Consensus       274 ~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAll~  352 (525)
                         ...++|+|+||+++||||||||+..    ...|++|.. +....... ....+.+++.||.|+.  ....+|||||+
T Consensus        23 ---~~~~~C~G~LIs~~~VLTaAhCv~~----~~~v~~g~~-~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~diall~   92 (224)
T d1nn6a_          23 ---GPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLGAH-NITEEEDTWQKLEVIKQFRHPKYNT--STLHHDIMLLK   92 (224)
T ss_dssp             ---SCEEEEEEEEEETTEEEECGGGCCS----EEEEEESCS-BTTSCCTTCEEEEEEEEEECTTCCT--TTCTTCCEEEE
T ss_pred             ---CCceEEEEEEEeCCEEEehhhcccc----cceEEeccc-ccccccccccceeEEEEEEeecccc--cccccchhhhc
Confidence               1368899999999999999999953    478889887 44433333 3444999999999998  67789999999


Q ss_pred             ECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCC
Q psy3170         353 IAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAG  430 (525)
Q Consensus       353 L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~  430 (525)
                      |.+|+.++..++|+|++....  ..+..+...||+.....+ ..+..++...+.+++.++|++.+.......+|+.....
T Consensus        93 l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~  171 (224)
T d1nn6a_          93 LKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLK-PGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRK  171 (224)
T ss_dssp             ESSCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCCCSSSC-CCCSBCEEEEEEBCCGGGGTTSTTCCTTTEEEECCTTT
T ss_pred             ccCCcccccccccccccccccccCCCceeeeccccccccCC-CccccceEEEEEecCHHHHhhhcccccceeeeccCccc
Confidence            999999999999999987654  456788889998776555 56678999999999999999887777778888877666


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ..+.|.||+||||++      +|+|+||+|++..|.  +.|.+||||++|.+||+++|++
T Consensus       172 ~~~~c~gDsG~PL~~------~~~l~GI~s~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  223 (224)
T d1nn6a_         172 TKSAFKGDSGGPLLC------AGVAQGIVSYGRSDA--KPPAVFTRISHYRPWINQILQA  223 (224)
T ss_dssp             C--CCCCCTTCEEEE------TTEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHHT
T ss_pred             cccccCCCccceEEE------CCEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHHhc
Confidence            778999999999988      579999999998775  4699999999999999999965

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.2e-40  Score=310.71  Aligned_cols=233  Identities=29%  Similarity=0.541  Sum_probs=185.0

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..+||||+|.|.+...+                                                        
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~--------------------------------------------------------   24 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDSSG--------------------------------------------------------   24 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCC--------------------------------------------------------
Confidence            689999999999999999875422                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                           ...++|+|+||+++||||||||+...  ....+.++...............|.++.+||.|+.......+|||||
T Consensus        25 -----~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~iall   97 (241)
T d1brup_          25 -----QWRHTCGGTLVDQSWVLTAAHCISSS--RTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALL   97 (241)
T ss_dssp             -----EEEEEEEEEEEETTEEEECGGGCCTT--SCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCGGGCCCCEEE
T ss_pred             -----cceEEeEEEEEeCCEEEECeEeeecc--cccceeeeccceeccCCCccccceeeeEEEeeeeeccccCCceEEEE
Confidence                 13678999999999999999999763  44556665542222222333444999999999988545566789999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEEE
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCAT  426 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca~  426 (525)
                      +|..++.++..++|+|++....  ..+..+.+.|||...... ..+..++...+..++..+|++....   ....++|+.
T Consensus        98 ~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~  176 (241)
T d1brup_          98 KLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG-ASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAG  176 (241)
T ss_dssp             EESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTS-CCCSBCEEEEEEEECHHHHTSTTTTGGGCCTTEEEEC
T ss_pred             ecccccccccceeeeeeccccccCCCceeEEEEeeeccCCCC-cCCCcceEEEEEEeCHHHhCccccccccccccceeec
Confidence            9999999999999999987654  457788999999876554 4567889999999999999876533   444555554


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCC--CCCCCCceEEEEcCCchhhhcccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~--c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                       ..+..+.|.||+||||++...++ +|+|+||+|+|..  |+..+.|++||||++|++||+++|++
T Consensus       177 -~~~~~~~C~gdsGgPl~~~~~~~-~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~  240 (241)
T d1brup_         177 -GDGIISSCNGDSGGPLNCQGANG-QWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIAN  240 (241)
T ss_dssp             -CSSSSBCCTTCTTCEEEEECTTS-CEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             -CCCCccccCCCcccceEEEcCCC-CEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence             45677899999999999875443 8999999999854  66678899999999999999999865

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-41  Score=313.36  Aligned_cols=206  Identities=31%  Similarity=0.564  Sum_probs=165.9

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+....  ...+..................+.++.+||.|+.......+|||||||++|+.
T Consensus        23 ~~~C~GtLI~~~~VLTaAhCv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~  100 (235)
T d1rfna_          23 DAFCGGSIVNEKWIVTAAHCVETGV--KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLV  100 (235)
T ss_dssp             TTCEEEEEEETTEEEECGGGCCTTC--CCEEEESCSBSSSCCSCCEEEEEEEEEECTTCBTTTBSSTTCCEEEEESSCCC
T ss_pred             CEEEEEEEeeCCEEEEChhhcCCCC--ceEEEEeecccccCCCCcceeeeeEEeeccCCCCCcCccCceEEEEEeCCCcc
Confidence            4679999999999999999997743  33333333311122222234448899999999875456679999999999999


Q ss_pred             cCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeCCCCcC
Q psy3170         359 FSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVMAGGKD  433 (525)
Q Consensus       359 ~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~~~~~~  433 (525)
                      ++..++|+|||....    ..+..+.+.||+...... .....|++..+.+++...|...+.. ..+..+|+....+..+
T Consensus       101 ~~~~~~p~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~  179 (235)
T d1rfna_         101 LNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKG-RSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRD  179 (235)
T ss_dssp             CBTTBCCCBCCCHHHHHHHHTTSEEEEEESCBSSTTS-CBCSBCEEEEEEBCCHHHHHHHCSSCCCTTEEEESCSSCSCB
T ss_pred             CCCccceeeeccccccccccccceEEEeccccccccc-cccCcceEEEEecccccccccccCceecCCeeEeecCCCCcc
Confidence            999999999987543    356678899999776654 5667799999999999999887765 4566777777777789


Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .|.||+||||++..++  +|+|+||+|++..|+..+.|.+||+|++|++||+++|+
T Consensus       180 ~~~gdsGgpl~~~~~~--~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         180 SCQGDSGGPHVTEVEG--TSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             CCTTCTTCEEEEESSS--CEEEEEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             ccCCCCCceeEEecCC--eEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            9999999999997665  89999999999999888899999999999999999985

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=308.37  Aligned_cols=200  Identities=27%  Similarity=0.545  Sum_probs=161.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.+.......+..+...............|.++++||.|+.  ....+|||||+|++|+.
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~i~~~~~y~~--~~~~~diAll~l~~~~~  100 (228)
T d1bioa_          23 AHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQP--DTIDHDLLLLQLSEKAT  100 (228)
T ss_dssp             EEEEEEEEEETTEEEECGGGGGGCSSSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCT--TCCTTCCEEEEESSCCC
T ss_pred             cEEEEEEEEeCCEEEECceeeeccccceeeeeccccccccCCcceeeccceeeeeeecccC--CCcccceehhhccccce
Confidence            5789999999999999999998865666666655542222222233444999999999998  77889999999999999


Q ss_pred             cCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeCCCCcCC
Q psy3170         359 FSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVMAGGKDT  434 (525)
Q Consensus       359 ~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~~~~~~~  434 (525)
                      +++.+.|+|+|....  ..+..+.+.|||.+...+ ..+..++...+.+++.+.|......  ......|+.. ..+.+.
T Consensus       101 ~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  178 (228)
T d1bioa_         101 LGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAG-RRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE-SNRRDS  178 (228)
T ss_dssp             CBTTBCCCCBCCSCCCCCTTCEEEEEESSCCSTTC-CCCSBCEEEEEEEECHHHHHSTTTTTTCCCTTEEEEC-CSSCBC
T ss_pred             eeeEEeeecccccccccccCceEEEecceeecCCC-CCCCcceEEEEEEeCHHHHhhhhcccccccccceeec-ccCCCc
Confidence            999999999987654  456778899999877655 5567799999999999999876654  3344556544 457789


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |.||+||||++      +++|+||+|++ ..|+..+.|.+||||++|++||+++|
T Consensus       179 ~~gdsG~Pl~~------~~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i  227 (228)
T d1bioa_         179 CKGDSGGPLVC------GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL  227 (228)
T ss_dssp             CTTTTTCEEEE------TTEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHH
T ss_pred             ccCCcCccEEE------cCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence            99999999987      67999999998 56877788999999999999999987

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=306.89  Aligned_cols=218  Identities=27%  Similarity=0.474  Sum_probs=177.8

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|++....                                                        
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~--------------------------------------------------------   24 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGNP--------------------------------------------------------   24 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEecCC--------------------------------------------------------
Confidence            689999999999999999764322                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+||||+++||||||||+.......+.|++|.. ............+.+++.||.|+.  ....+|||||
T Consensus        25 ------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~diAll   95 (221)
T d1fuja_          25 ------GSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAH-NVRTQEPTQQHFSVAQVFLNNYDA--ENKLNDILLI   95 (221)
T ss_dssp             ------TCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCS-BTTSCCTTCEEEEEEEEEECCCBT--TTTBCCCEEE
T ss_pred             ------CCEEEEEEEEeCCEEEEeeEEEeecCCccceeeeecc-ccccccccceeeeeeeEEEeeecC--CCCccEEEEE
Confidence                  2578999999999999999999887777788888876 444444455666999999999988  7788999999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCC
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMA  429 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~  429 (525)
                      +|++|+.++++++|+|||....  ..+..+.+.||+.....+ .....++...+.+.+...|        ....|.....
T Consensus        96 ~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~  166 (221)
T d1fuja_          96 QLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHD-PPAQVLQELNVTVVTFFCR--------PHNICTFVPR  166 (221)
T ss_dssp             EESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSS-CBCSBCEEEEEEEECTTCC--------TTEEEEECSS
T ss_pred             EccccccccceEEEEEecccccccCCCceEEEeccccccccc-ccCccceeeeeeeeeeccc--------cccceecccc
Confidence            9999999999999999988764  456788899999876555 4556788888877764433        2333444445


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccc
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      .+.+.|.||+||||++      +++|+||+||+. +|+..+.|.+||||++|++||+++|+
T Consensus       167 ~~~~~c~gd~G~pl~~------~~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         167 RKAGICFGDSGGPLIC------DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             SSCBCCTTCTTCEEEE------TTEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCCceeCCccCCCEEE------eCEEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            6789999999999987      579999999984 78878889999999999999999874

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=317.25  Aligned_cols=221  Identities=30%  Similarity=0.437  Sum_probs=181.0

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.+|..+||||+|+|.+....                                                        
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~~--------------------------------------------------------   24 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQK--------------------------------------------------------   24 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEETT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCC--------------------------------------------------------
Confidence            689999999999999999765422                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc-ceEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD-NIHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                            ..++|+||||+++||||||||+..    ...+++|.. ........ ....|.+++.||.|+.  ....+||||
T Consensus        25 ------~~~~C~GtLIs~~~VLTaAhC~~~----~~~v~~g~~-~~~~~~~~~~~~~v~~i~~~~~~~~--~~~~~DiAl   91 (227)
T d1fq3a_          25 ------SLKRCGGFLIQDDFVLTAAHCWGS----SINVTLGAH-NIKEQEPTQQFIPVKRPIPHPAYNP--KNFSNDIML   91 (227)
T ss_dssp             ------EEECCEEEEEETTEEEECGGGCCS----EEEEEESCS-BTTTTCTTCEEEEEEEECCCTTCCT--TTTTTCCEE
T ss_pred             ------CcEEEEEEEEeCCEEEeCEeeccc----cccceeccc-cccccccccEEEEEEEEEecccCCC--CCCCcchhh
Confidence                  357899999999999999999853    467778776 33333333 3444999999999998  677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCC--CCCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTL--ISSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~--~~~~~Ca~  426 (525)
                      |+|++|+.|+++++|+||+....  ..+..+.++|||.+...+ .....+++..+.+++.+.|++.+...  ....+|+.
T Consensus        92 l~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~  170 (227)
T d1fq3a_          92 LQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVG  170 (227)
T ss_dssp             EEESSCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCCSTTTS-CCCSBCCBCEEECCCHHHHTTTCTTTCCTTTEECCS
T ss_pred             hhcccccccceeEEEEeecccccccCCCCEEEEEeeccccCcc-cccccceEEEEEEEcHHHhhhhhcccccccceeeee
Confidence            99999999999999999987654  456788899999876555 56778999999999999999887652  23345555


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ......+.|.||+||||++      +++|+||+|+|..|+  ..|.+||||++|++||+++|+.
T Consensus       171 ~~~~~~~~~~gdsG~pl~~------~~~l~GI~s~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         171 DPEIKKTSFKGDSGGPLVC------NKVAQGIVSYGRNNG--MPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             CTTSSCBCCTTCTTCBCBS------SSSCCCEECCCCTTS--CSCCCEECHHHHHHHHHHHTTC
T ss_pred             ccccccccccCCCCceEEE------eCEEEEEEEEcCCCC--CCCcEEEEHHHHHHHHHHHHHh
Confidence            5556788999999999987      578999999998886  3589999999999999999864

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=3.5e-40  Score=309.21  Aligned_cols=201  Identities=29%  Similarity=0.521  Sum_probs=160.7

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceE--EEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIH--RVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~--~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+|+||+++||||||||+...    ..+.+... ...........  .....+.||.|+.  ....+|||||||++|
T Consensus        23 ~~~C~G~LIs~~~VLTaAhCv~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DiaLl~L~~~   95 (234)
T d1op0a_          23 GFFCGGTLINPEWVVTAAHCDSTD----FQMQLGVH-SKKVLNEDEQTRNPKEKFICPNKNNN--EVLDKDIMLIKLDKP   95 (234)
T ss_dssp             EEEEEEEEEETTEEEECGGGCCSS----CEEEESCS-CSSSCCTTCEEECEEEEEECTTCCTT--CTTSSCCEEEEESSC
T ss_pred             cEEEEEEEEcCCEEEECceeCCCC----Ccccccee-eccccCCcceeeeeeeeccccccccc--cccchhhhhhhcCCc
Confidence            588999999999999999999653    22333332 11222222222  2567778888888  678899999999999


Q ss_pred             cccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CC-CCcEEEEeCCCCcCC
Q psy3170         357 VEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LI-SSQLCATVMAGGKDT  434 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~-~~~~Ca~~~~~~~~~  434 (525)
                      +.|+++++|+|||......+..+.++||+............++...+.+++...|...+.. .. ..++|.....+..+.
T Consensus        96 v~~~~~i~picl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~  175 (234)
T d1op0a_          96 ISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDT  175 (234)
T ss_dssp             CCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCCTTSCEEEEECTTCCCBC
T ss_pred             eeccceeecccccccCcccceEEEEeeeccccccccccccccccccceEechHHhcccccCcceeeeeeeeccccccccc
Confidence            9999999999999888888899999999987766656677899999999999999887755 33 445555555567889


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhcccccccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVWPDQ  492 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~  492 (525)
                      |.||+||||++      +++|+||+|++ ..|+....|.+||||++|++||+++|+.+.
T Consensus       176 ~~g~~G~Pl~~------~~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~~~  228 (234)
T d1op0a_         176 CGGDSGGPLIC------NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNT  228 (234)
T ss_dssp             CTTCTTCEEEE------TTEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHTCT
T ss_pred             ccCCCCceEEE------cCEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhhcC
Confidence            99999999987      57899999998 568878889999999999999999997544

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=4.8e-40  Score=308.43  Aligned_cols=202  Identities=33%  Similarity=0.548  Sum_probs=161.6

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCC---------CCCcccceE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQYHDIA  349 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~~DIA  349 (525)
                      +++|+||||+++||||||||+.+.    ..+.+................+..+..|+.|...         .....+|||
T Consensus        21 ~~~C~GtLIs~~~VLTaAhCv~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dia   96 (235)
T d1tona_          21 EYLCGGVLIDPSWVITAAHCYSNN----YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLM   96 (235)
T ss_dssp             SSEEEEEEEETTEEEECGGGCCSC----CEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCE
T ss_pred             CeEEEEEEecCCEEEECceecCCC----CceEEeeeeeecCCCceeEeeeeeeeeeeeceeeeeeeccccccccccccee
Confidence            478999999999999999999652    3344443311111111222236677777766431         134568999


Q ss_pred             EEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEEEeC
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCATVM  428 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca~~~  428 (525)
                      ||+|.+|+.|++.+.|+||+.........+.++|||.+..........|+...+.+++.++|+..+.. ..+.++|+...
T Consensus        97 ll~L~~~v~~~~~i~~i~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~c~~~~  176 (235)
T d1tona_          97 LLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEM  176 (235)
T ss_dssp             EEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGSTTGGGGEEEEECT
T ss_pred             EEEecCccccCCcccccccccccccccceeEEEEccccccccccccccceeeeeeeeCHHHHHHHhCCCCCCCceEeCcC
Confidence            99999999999999999999888888889999999988776656667899999999999999988865 55778999887


Q ss_pred             CCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       429 ~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .++.+.|.||+||||++      +++|+||+|++. .|+..+.|.+||||++|++||+++|++
T Consensus       177 ~~~~~~c~gdsG~Pl~~------~~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~~i~~  233 (235)
T d1tona_         177 EGGKDTCAGDSGGPLIC------DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE  233 (235)
T ss_dssp             TCSCBCCTTCTTCEEEE------TTEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCccccCCCcCCeEEE------cCEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHHH
Confidence            77888999999999988      689999999985 687678899999999999999999964

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-40  Score=304.50  Aligned_cols=195  Identities=22%  Similarity=0.353  Sum_probs=156.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+||||+++||||||||+.........+.++...............+..++.||.|+.  ....+|||||||++|+.
T Consensus        23 ~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DIAll~L~~~i~  100 (225)
T d1a7sa_          23 RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDP--QQNLNDLMLLQLDREAN  100 (225)
T ss_dssp             EEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSSCBT--TTTBSCCEEEEESSCCC
T ss_pred             cEEEEEEEEcCCEEEECeeeeeeccccceeeEEeeeecccccccccceeeeeeeeeeeccc--cccccccchhhcCCccc
Confidence            6789999999999999999998876777788887662222222333444788899999998  67889999999999999


Q ss_pred             cCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         359 FSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       359 ~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                      +.+.++|+||+....  ..+..+.++|||...... .....++...+.+++.+.|..       ...|++......+.|.
T Consensus       101 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~-------~~~~~~~~~~~~~~c~  172 (225)
T d1a7sa_         101 LTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGG-RLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGICN  172 (225)
T ss_dssp             CBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTC-CCCSSCEEEEEEECCGGGSCT-------TEEEEECSSSSCBCCT
T ss_pred             ccccceeEEeeccccccCCCceeEecccccccccc-ccccceeEEEEEEeehhhccc-------ccceeeeccccccccc
Confidence            999999999976544  456789999999876554 566788999999999999954       3456666667788999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ||+||||++      +++|+||.||+..|. ...|.+||||++|.+||+++|++
T Consensus       173 gdsG~Pl~~------~~~l~Gi~S~~~~~c-~~~p~v~t~v~~y~~WI~~~i~~  219 (225)
T d1a7sa_         173 GDGGTPLVC------EGLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             TCTTCEEEE------TTEEEEEEEEECSST-TSSCEEEEEGGGGHHHHHHHHHS
T ss_pred             CCCCCCEEE------eCEEEEEEEECCCCC-CCCCCEEEEHHHHHHHHHHHHCC
Confidence            999999988      688999999997654 34699999999999999999974

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.5e-39  Score=305.80  Aligned_cols=231  Identities=29%  Similarity=0.523  Sum_probs=182.9

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||++|.++||||+|+|.+....                                                        
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~--------------------------------------------------------   24 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRSGS--------------------------------------------------------   24 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCEEEEEEEecCC--------------------------------------------------------
Confidence            689999999999999999876422                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccce-EEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                           ...++|+|+||+++||||||||+.+.  ....+.+|.. .......... ......++|+.|..+.....+||||
T Consensus        25 -----~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAl   96 (240)
T d1gvkb_          25 -----SWAHTCGGTLIRQNWVMTAAHCVDRE--LTFRVVVGEH-NLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIAL   96 (240)
T ss_dssp             -----EEEEEEEEEEEETTEEEECGGGGCSC--CCEEEEESCS-BTTSCCSCCEEEEEEEEEECTTCCTTCGGGCCCCEE
T ss_pred             -----ccceEEEEEEEeCCEEEECccccccc--CCceEEeeee-eccccccccccccccceeEEEeecccccccCcceee
Confidence                 13678999999999999999999863  4556777766 3333222222 2344555555554443677899999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCA  425 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca  425 (525)
                      |+|.+++.+.+.++|+||+....  .........||+...... .....++...+.+++...|......   ..+.++|+
T Consensus        97 l~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  175 (240)
T d1gvkb_          97 LRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNG-QLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCA  175 (240)
T ss_dssp             EEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTC-CBCSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEE
T ss_pred             ecccCcccccccccceeeccCccccccccceeEeccccccccc-cccceeeEEEEEEEcHHHhcceeccCCccCCceEEe
Confidence            99999999999999999987654  345677788998876554 5667889999999999999877654   56778998


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      .. .+..+.|.||+||||++..++  +|+|+||+||+.  +|+..+.|++||||++|++||+++|++
T Consensus       176 ~~-~~~~~~c~gDsG~pl~~~~~~--~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~  239 (240)
T d1gvkb_         176 GG-DGVRSGCQGDSGGPLHCLVNG--QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIAS  239 (240)
T ss_dssp             CC-SSSCBCCTTCTTCEEEEEETT--EEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             cC-CCCCccccCccccceEEEECC--EEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHhc
Confidence            76 456789999999999998766  999999999985  466667899999999999999999875

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-40  Score=313.33  Aligned_cols=227  Identities=30%  Similarity=0.544  Sum_probs=174.6

Q ss_pred             CCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceee
Q psy3170         189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGF  268 (525)
Q Consensus       189 ~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (525)
                      .+||+||.++..++|||+|.|.                                                          
T Consensus        11 ~~ri~gG~~~~~~~~Pw~v~l~----------------------------------------------------------   32 (259)
T d1elva1          11 KQRIIGGSDADIKNFPWQVFFD----------------------------------------------------------   32 (259)
T ss_dssp             ---CBTCEECCGGGSTTEEEEE----------------------------------------------------------
T ss_pred             CCceECCEECCCCCcceEEEeC----------------------------------------------------------
Confidence            4689999999999999999983                                                          


Q ss_pred             eecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccc-ccceEEEEEEEeCCCCCCC-----CC
Q psy3170         269 LEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV-TDNIHRVMQNILHPNYTTE-----GT  342 (525)
Q Consensus       269 ~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~-~~~~~~v~~i~~hp~y~~~-----~~  342 (525)
                                .++|+|+||+++||||||||+.+.  ....+++|......... ......|.++++||.|...     ..
T Consensus        33 ----------~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~~  100 (259)
T d1elva1          33 ----------NPWAGGALINEYWVLTAAHVVEGN--REPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRT  100 (259)
T ss_dssp             ----------TTEEEEEEEETTEEEECHHHHTTC--SSCCEECSCSBCC-------CEECEEEEEECTTSCCCSSCTTCC
T ss_pred             ----------CceEEEEEEeCCEEEecccccccc--cceeEEeeeeeeecccccccccccceeEeecceeecccccccCC
Confidence                      357999999999999999999774  44556666552111112 2233449999999999641     14


Q ss_pred             CcccceEEEEECCCcccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-
Q psy3170         343 SQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-  417 (525)
Q Consensus       343 ~~~~DIAll~L~~~~~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-  417 (525)
                      ...||||||||++|+.+++.++|+|++....    ..+..+.+.||+.+....  ....++...+.+++...|...+.. 
T Consensus       101 ~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  178 (259)
T d1elva1         101 NFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD--RAVRLKAARLPVAPLRKCKEVKVEK  178 (259)
T ss_dssp             CCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCS--SCSBCEEEEEEEECHHHHHTC----
T ss_pred             CcccceeeeecccceehhcccCceeeccCccccccccceEEEEeccccccccc--cccccccceeeEechhhceeeeecc
Confidence            5678999999999999999999999986543    456788999999876544  455688888999999999765422 


Q ss_pred             ---------CCCCcEEEEeCCCCcCCCcCCCCCcceeecCC-CceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccc
Q psy3170         418 ---------LISSQLCATVMAGGKDTCQGDSGGPLQTIMPD-LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       418 ---------~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~-~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                               +...++|+.. ..+.+.|.||+||||++...+ ..+|+|+||+|++..|+   .|.+||||++|.+||+++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~-~~~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c~---~p~vft~V~~~~~WI~~~  254 (259)
T d1elva1         179 PTADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKT  254 (259)
T ss_dssp             ------CCCCCTTEEEEEC-STTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTT---SEEEEEEGGGGHHHHHHH
T ss_pred             cccccccceeecceeeccC-CCCCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCCCC---CceEEeEHHHHHHHHHHH
Confidence                     3455666665 456789999999999987543 45899999999999886   589999999999999999


Q ss_pred             cccc
Q psy3170         488 VWPD  491 (525)
Q Consensus       488 i~~~  491 (525)
                      |+++
T Consensus       255 i~~~  258 (259)
T d1elva1         255 MQEN  258 (259)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9654

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-40  Score=303.80  Aligned_cols=193  Identities=26%  Similarity=0.446  Sum_probs=158.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+|+||+++||||||||+.........+.++.. ............+..++.||.|+.  ....+|||||+|++|+.
T Consensus        23 ~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~diall~l~~~~~   99 (218)
T d2z7fe1          23 GHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAH-NLSRREPTRQVFAVQRIFENGYDP--VNLLNDIVILQLNGSAT   99 (218)
T ss_dssp             EEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCS-BTTSCCTTCEEEEEEEEEESCCBT--TTTBSCCEEEEESSCCC
T ss_pred             CeEEEEEEEeCCEEEECeEecccccccceeeeeeec-cccccccceeeeeeeeEeeecccc--ccccceEEEeeccccce
Confidence            578999999999999999999886666777777765 333344445555888899999988  77889999999999999


Q ss_pred             cCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         359 FSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       359 ~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                      +++.++|+|||..+.  .....+.++||+...... ..+..|+...+++.+ +.|.       ..+.|+.......+.|.
T Consensus       100 ~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~l~~~~~~~~~-~~c~-------~~~~~~~~~~~~~~~C~  170 (218)
T d2z7fe1         100 INANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNR-GIASVLQELNVTVVT-SLCR-------RSNVCTLVRGRQAGVCF  170 (218)
T ss_dssp             CSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSC-CBCSBCEEEEEEEEC-TTCC-------TTSEEEECTTSCCBCCT
T ss_pred             eeeeeeeeeeccCccccCCCcEEEEeccceeeccc-ccccceeEEEecccc-cccc-------eeeeeeeecCcccCccc
Confidence            999999999987655  345678899999877655 556778888888876 4553       34678776666678999


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeec-CCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g-~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      ||+||||++      +++|+||+||+ .+|+....|.+||||++|++||+++|+
T Consensus       171 gdsG~Pl~~------~~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         171 GDSGSPLVC------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             TCTTCEEEE------TTEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             cccCCCEEE------CCEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence            999999998      67999999998 568877889999999999999999874

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=309.06  Aligned_cols=213  Identities=31%  Similarity=0.539  Sum_probs=160.9

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCC-CCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPL-GKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      .++|+||||+++||||||||+.... ...+.+.++.. ......... ...+..++.|+.|..  ....+|||||||++|
T Consensus        23 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DiAll~L~~~   99 (254)
T d2bz6h1          23 AQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEH-DLSEHDGDEQSRRVAQVIIPSTYVP--GTTNHDIALLRLHQP   99 (254)
T ss_dssp             EEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCC-BTTCCCSCCEEEEEEEEEEETTCCT--TSCSSCCEEEEESSC
T ss_pred             CEEEEEEEeCCCEEEECcccccCCCCcccceeeccce-eeccccccceeeeeeeeeecccccc--cccccceeEEEecCc
Confidence            5789999999999999999998753 33455555555 333333233 333888899999988  677899999999999


Q ss_pred             cccCCCccceecCCCCC-----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC-C-----CCCCcEEE
Q psy3170         357 VEFSETLKPACLNRAHN-----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET-T-----LISSQLCA  425 (525)
Q Consensus       357 ~~~~~~v~picL~~~~~-----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~-~-----~~~~~~Ca  425 (525)
                      +.+++.++|+|||....     .....+.+.|||...... ......+.....+.....|..... .     ....++|+
T Consensus       100 v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (254)
T d2bz6h1         100 VVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRG-ATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCA  178 (254)
T ss_dssp             CCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTS-CBCSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEE
T ss_pred             ccccceEeeeecCccccccccccCCceEEEeccCccCCCC-cccccceeeeecccchhhhhhhhhcccccccccccceee
Confidence            99999999999986432     356678899999886655 344444444455555444432221 1     33455666


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccccccCCCc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS  497 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~~~~~~~~  497 (525)
                      ....+....|.||+||||++..++  +|+|+||+||+..|+..+.|.+||||++|++||+++|+.+..|...
T Consensus       179 ~~~~~~~~~~~gdsGgPl~~~~~~--~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~~~~~~~~~  248 (254)
T d2bz6h1         179 GYSDGSKDSCKGDSGGPHATHYRG--TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRPGVL  248 (254)
T ss_dssp             SCSSSSCBCCGGGTTCEEEEEETT--EEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTSCCCSSSE
T ss_pred             eccCCCcccccCccccceEEccCC--eEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhhCCCCCCC
Confidence            655667789999999999987765  9999999999999998889999999999999999999887666543

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-40  Score=310.60  Aligned_cols=233  Identities=33%  Similarity=0.556  Sum_probs=178.0

Q ss_pred             cccCC------CCCeeecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccch
Q psy3170         183 QCDIL------AMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR  256 (525)
Q Consensus       183 ~Cg~~------~~~~i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~  256 (525)
                      .||++      ..+||+||.++..++|||+|+|....                                           
T Consensus         3 ~cg~~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~-------------------------------------------   39 (247)
T d1rjxb_           3 DCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRF-------------------------------------------   39 (247)
T ss_dssp             STTCCSSCCCCCCTTSTTCEECCTTSSTTEEEEEETT-------------------------------------------
T ss_pred             CCCCCCcCCCCCCCeEECCEECCCCCCCcEEEEEECC-------------------------------------------
Confidence            57763      34689999999999999999996532                                           


Q ss_pred             hheeeeecceeeeecCCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCC
Q psy3170         257 TLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN  336 (525)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~  336 (525)
                                           ..++|+||||+++||||||||+.........+.++.........     ...+.+.|+.
T Consensus        40 ---------------------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~   93 (247)
T d1rjxb_          40 ---------------------GMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLE-----PHVQEIEVSR   93 (247)
T ss_dssp             ---------------------CCEEEEEEEEETTEEEEEGGGGTTCSCGGGEEEEESCCBSSSCC-----TTCEEEEEEE
T ss_pred             ---------------------CCEEEEEEEEeCCEEEeeeEEEEeccCCccceeecccccccccc-----ceeeEEeecc
Confidence                                 25789999999999999999998754444444444331111111     1223334444


Q ss_pred             CCCCCCCcccceEEEEECCCcccCCCccceecCCCCCC--CCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcc
Q psy3170         337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQ  414 (525)
Q Consensus       337 y~~~~~~~~~DIAll~L~~~~~~~~~v~picL~~~~~~--~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~  414 (525)
                      |..  ....+||||++|++++.+++.+.|+||+.....  ....+...||+.....  .....++...+.+++.+.|...
T Consensus        94 ~~~--~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  169 (247)
T d1rjxb_          94 LFL--EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT--FGAGLLMEAQLPVIENKVCNRY  169 (247)
T ss_dssp             EEE--CSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC------CCCSBCEEEEEEEECHHHHTST
T ss_pred             ccC--CCccchhhhhhhhcccccccccccccccccccccCCCceeeecccccccCC--CCCCcceEEEEEEEchHHhhhh
Confidence            444  445689999999999999999999999876553  3445667777754432  4567788899999999999776


Q ss_pred             cCC---CCCCcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         415 ETT---LISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       415 ~~~---~~~~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ...   ....++|++...+..+.|.||+||||++..++  +|+|+||+|++..|+..+.|.+||+|++|++||+++|+.
T Consensus       170 ~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~--~~~l~Gi~S~~~~c~~~~~p~v~t~v~~~~~WI~~~i~~  246 (247)
T d1rjxb_         170 EFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             TTTTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEECSS--SEEEEEEECTTSCCBBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             hccCcccccceeEEeccCCCcccccCCccceEEEeeCC--EEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence            543   56789999887778889999999999987765  899999999999998788899999999999999999864

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=2.3e-39  Score=304.77  Aligned_cols=229  Identities=29%  Similarity=0.471  Sum_probs=185.9

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..+||||+|+|......                                                        
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~~~--------------------------------------------------------   24 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQSGS--------------------------------------------------------   24 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSS--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEeCCC--------------------------------------------------------
Confidence            689999999999999999765421                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+||||+++||||||||+.......+.+..|.. ............|..+++||.|+.....+.+|||||
T Consensus        25 ------~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~-~~~~~~~~~~~~v~~~~~h~~~~~~~~~~~~diall   97 (241)
T d1m9ua_          25 ------WSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLW-QQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAIL   97 (241)
T ss_dssp             ------EEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCS-BTTCCTTCEEEEEEEEEECTTTTCSSSTTTTCCEEE
T ss_pred             ------ccEEEEEEEEeCCEEEEChhhcccccCceeeEEEEee-ecccccccccccceeeeeeeeeccccccccccceee
Confidence                  3689999999999999999999776666677777765 333333344455999999999998656677999999


Q ss_pred             EECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-----CCCCcEE
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-----LISSQLC  424 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-----~~~~~~C  424 (525)
                      +|++++.+++.++|+|++....  ..+..+.+.||+...... ..+..++...+.+++.++|++.+..     .....+|
T Consensus        98 ~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~  176 (241)
T d1m9ua_          98 HLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTN-NLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC  176 (241)
T ss_dssp             EESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSS-CCCSBCEEEEEEBCCHHHHHHHHTTSTTCCCCTTEEE
T ss_pred             eccceeeeeeceeeeeeeccccccccceEEEEeecccccCCC-CCCCcceEEEEEeechhHhhhhhhcccccccccceeE
Confidence            9999999999999999986543  567788899999877655 5577899999999999999876543     3455677


Q ss_pred             EEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec----CCCCCCCCceEEEEcCCchhhhccc
Q psy3170         425 ATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG----RQCGHANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       425 a~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g----~~c~~~~~p~v~t~v~~~~~WI~~~  487 (525)
                      +.......+.|.||+||||++...   +++|+||+|+.    ..|+..+.|++||||++|++||+++
T Consensus       177 ~~~~~~~~~~~~g~sGgpl~~~~~---~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~n  240 (241)
T d1m9ua_         177 VQDPAGNTGACNGDSGGPLNCPDG---GTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN  240 (241)
T ss_dssp             ECCTTSCCBCCTTCTTCEEEEESS---SEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHH
T ss_pred             eecccCCcCcccCCCCcceEEecC---CEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHc
Confidence            776667788999999999987643   57899999875    3466677899999999999999865

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=4e-39  Score=302.20  Aligned_cols=229  Identities=27%  Similarity=0.495  Sum_probs=181.0

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..+||||+|+|.+....                                                        
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~~--------------------------------------------------------   24 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSGS--------------------------------------------------------   24 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETT--------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEccCC--------------------------------------------------------
Confidence            689999999999999999876532                                                        


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccc-eEEEEEEEeCCCCCCCCCCcccceEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDN-IHRVMQNILHPNYTTEGTSQYHDIAL  350 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIAl  350 (525)
                           ...++|+|+||+++||||||||+..  .....+.++.. ......... ...+..+.+||.|........+||||
T Consensus        25 -----~~~~~C~GtLIs~~~VLTaAhCv~~--~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dial   96 (236)
T d1elta_          25 -----SYYHTCGGSLIRQGWVMTAAHCVDS--ARTWRVVLGEH-NLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIAL   96 (236)
T ss_dssp             -----EEEEEEEEEEEETTEEEECHHHHSS--CCCEEEEESCS-BTTSCCSCCEEECEEEEEECTTCCTTCGGGCCCCEE
T ss_pred             -----cceeEEEEEEEeCCEEEECeeeccc--cccceeeccce-eeecccCCceeeeeeEEEEeeeecccccccCceEEE
Confidence                 1367899999999999999999976  35566777765 333323333 33388888999998754455689999


Q ss_pred             EEECCCcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEE
Q psy3170         351 LKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCAT  426 (525)
Q Consensus       351 l~L~~~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~  426 (525)
                      |+|++|+.++..++|||||....  .....+.+.|||...... .....+++..+.+++..+|......  .....+|..
T Consensus        97 l~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (236)
T d1elta_          97 LRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGG-PLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCA  175 (236)
T ss_dssp             EEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTC-CCCSBCEEEECCEECHHHHTSTTTTGGGSCTTEEEE
T ss_pred             eeccCcceeecccceeecCchhcccCCCceEEEecccccccCc-ccCccceeeeeEEEcHHHhhhhcccccccceeeeec
Confidence            99999999999999999997655  345688999999876544 5667788999999999999876543  223334433


Q ss_pred             eCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeec--CCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         427 VMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYG--RQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       427 ~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g--~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      . ....+.|.||+||||++..++  +|+|+||+||+  ..|+..+.|.+||||++|++||+++|
T Consensus       176 ~-~~~~~~c~gdsGgpl~~~~~~--~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         176 G-GGANSGCNGDSGGPLNCQVNG--SYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             C-CSSCBCCTTCTTCEEEEEETT--EEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             C-CccccccccccccceEEEECC--eEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            2 345678999999999998765  89999999996  46877788999999999999999875

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=3.1e-39  Score=303.22  Aligned_cols=224  Identities=30%  Similarity=0.487  Sum_probs=179.3

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||.++..+||||+|+|.+.                                                           
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~-----------------------------------------------------------   21 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQ-----------------------------------------------------------   21 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEET-----------------------------------------------------------
T ss_pred             CCCCEECCCCCCCcEEEEEEC-----------------------------------------------------------
Confidence            689999999999999999753                                                           


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccc-cceEEEEEEEeCCCCCCC---------C
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT-DNIHRVMQNILHPNYTTE---------G  341 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~-~~~~~v~~i~~hp~y~~~---------~  341 (525)
                            ..++|+||||+++||||||||+.+.    ........ ....... .....+.....|+.|+..         .
T Consensus        22 ------~~~~C~GtLIs~~~VLTaAhCv~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (237)
T d1gvza_          22 ------GHFQCGGVLVHPQWVLTAAHCMSDD----YQIWLGRH-NLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPY   90 (237)
T ss_dssp             ------TEEEEEEEEEETTEEEECGGGCCSS----CEEEESCS-BTTSCCTTCEEECEEEEEECTTSCGGGGGCSSCCTT
T ss_pred             ------CeEEEEEEEEeCCEEEeChhhccCC----CceeEeee-eeccccCcceeeeeeeEEeeeeeeeeeeecccccCc
Confidence                  2689999999999999999999763    12222222 1112222 223337888888877531         1


Q ss_pred             CCcccceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCC
Q psy3170         342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LIS  420 (525)
Q Consensus       342 ~~~~~DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~  420 (525)
                      ....+|||||||++|+.+++.++|+|||......+..+.+.|||.........+..|++..+.+++.+.|...+.. ..+
T Consensus        91 ~~~~~Diali~L~~pv~~~~~v~p~~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  170 (237)
T d1gvza_          91 DDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTE  170 (237)
T ss_dssp             SCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCGGGCCT
T ss_pred             cccccceEEEEECCceecccccccccccccccccceeEEEEeeeeeccccccccceeeEEEEEeecHHHHHhhccccccc
Confidence            2346899999999999999999999999888888889999999987766656677899999999999999988765 456


Q ss_pred             CcEEEEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhccccccc
Q psy3170         421 SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWPD  491 (525)
Q Consensus       421 ~~~Ca~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~~  491 (525)
                      .++|+....++...|.||+||||++      +++|+||+|||. .|+..+.|.+||||++|++||+++|+++
T Consensus       171 ~~~~~~~~~~~~~~~~gdsG~pl~~------~~~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~~i~~~  236 (237)
T d1gvza_         171 FVLCATHRDDSGSICLGDSGGALIC------DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEKN  236 (237)
T ss_dssp             TEEEEECSSTTCEECGGGTTCEEEE------TTEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHHH
T ss_pred             ccccceecccccccccCCCCCcEEE------cCEEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHHHHHhc
Confidence            6777777667788999999999988      579999999985 5766778999999999999999999653

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=1e-38  Score=298.37  Aligned_cols=220  Identities=28%  Similarity=0.514  Sum_probs=172.3

Q ss_pred             eecCccCCCCCCCceeeeeeeecCCcceeeeeeecceeeccceeeeccccccCCcccccccccchhheeeeecceeeeec
Q psy3170         192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPLRTLLFISMAEVGFLEE  271 (525)
Q Consensus       192 i~~g~~~~~~~~Pw~v~i~~~~~~~~~~~~~~~cggtli~~~~~~t~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (525)
                      |+||++|..+||||+|+|.+....+                                                       
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~~~-------------------------------------------------------   25 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQDQ-------------------------------------------------------   25 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTS-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEEEEEecCC-------------------------------------------------------
Confidence            6899999999999999998754322                                                       


Q ss_pred             CCccccceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         272 GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       272 ~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                            ..++|+||||+++||||||||+..  .....+++|..   ..........|+++++||.|+.  ....+|||||
T Consensus        26 ------~~~~C~GtLIs~~~VLTaAhC~~~--~~~~~v~~~~~---~~~~~~~~~~v~~i~~hp~y~~--~~~~~DiALl   92 (230)
T d2hlca_          26 ------RRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLGSA---VQYEGEAVVNSERIISHSMFNP--DTYLNDVALI   92 (230)
T ss_dssp             ------CEEEEEEEEEETTEEEECHHHHTT--EEEEEEEESCS---BTTCCSEEEECSEEEECTTCBT--TTTBTCCEEE
T ss_pred             ------CeeEEEEEEEeCCEEEEeeecccc--cccceeecccc---eecccccceeeEeEEeeecccc--cccccceeEE
Confidence                  468899999999999999999965  34455666644   2222334444999999999998  6778999999


Q ss_pred             EECCCcccCCCccceecCCCCC----CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEE
Q psy3170         352 KIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCA  425 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca  425 (525)
                      +|+++ .+.++++|+||+....    ..+..+.+.|||...    .....++...+..++.+.|...+..  ..+.++|+
T Consensus        93 ~L~~~-~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  167 (230)
T d2hlca_          93 KIPHV-EYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSN----TDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICG  167 (230)
T ss_dssp             ECSCC-CCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCS----SCCCBCEEEEEEEECHHHHHTTSCTTSSCTTEEEE
T ss_pred             Eeecc-cccccceeEEeeccccccccccceeEEEEeecccc----ccchhhheeeeccccchhhhhccccccccccceEe
Confidence            99876 5788999999987543    345677788888543    3455688889999999999877654  34556666


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecCCC-CCCCCceEEEEcCCchhhhccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQC-GHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c-~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      . ...+.+.|.||+|||+++.    ++|+|+||+|++.+| +..+.|.+||+|++|.+||+++|.
T Consensus       168 ~-~~~~~~~~~gdsGgp~~~~----~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~  227 (230)
T d2hlca_         168 D-TSDGKSPCFGDSGGPFVLS----DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             C-CTTSCBCCTTCTTCEEEEG----GGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHC
T ss_pred             c-cccCccccccccCCCeEEC----CCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            4 4566789999999999873    278999999998653 346789999999999999999885

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-39  Score=299.55  Aligned_cols=207  Identities=27%  Similarity=0.497  Sum_probs=164.1

Q ss_pred             ceeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeeccccccc--ceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD--NIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       278 ~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~--~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      ..++|+||||+++||||||||+.+  .....+.+|...........  ....|.++++||.|+.......+|||||+|++
T Consensus        16 ~~~~C~GtLIs~~~VLTaAhCv~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~diAll~l~~   93 (232)
T d1fona_          16 FHHTCGGSLIAPDWVVTAGHCIST--SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSR   93 (232)
T ss_dssp             EEEEECCEEEETTEEEECGGGCCT--TSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCGGGCCCCEEEECSS
T ss_pred             eEEEEEEEEecCCEEEEChhhccC--CCceEEEEEeccccccccccccccceeEEEEEccCccccccccccceeeeeccc
Confidence            468999999999999999999986  35566777766222211111  12238889999999874344559999999999


Q ss_pred             CcccCCCccceecCCCCC--CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC---CCCCcEEEEeCCC
Q psy3170         356 PVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT---LISSQLCATVMAG  430 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~--~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~---~~~~~~Ca~~~~~  430 (525)
                      |+.+++.++|+|++....  ..+..+.+.||+...... ..+..++...+.+++.+.|.+....   +...++|+..  .
T Consensus        94 ~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~--~  170 (232)
T d1fona_          94 SAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGG-PLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGG--D  170 (232)
T ss_dssp             CCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSS-SCCSBCEEEECCEECHHHHTSTTTTGGGCCTTEEEECC--S
T ss_pred             ceEEeecceeeecCcccccCCCCceeEeeccccccCCC-CCCCcceEEEEEEEcHHHhhhhhccCceeeeceeeecc--c
Confidence            999999999999987654  345678888998876544 5677899999999999999876543   5566777763  4


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +...|.||+||||++...++ +|+|+||+|++.  +|+..+.|++||||++|++||+++|++
T Consensus       171 ~~~~~~gdsGgpl~~~~~~~-~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~  231 (232)
T d1fona_         171 TRSGCNGDSGGPLNCPAADG-SWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIAS  231 (232)
T ss_dssp             SSCSTTSCTTCEEEEECSSS-CEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred             cccccccCCCCceEEEccCC-CEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHc
Confidence            56789999999999876543 899999999974  587778899999999999999999965

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=310.55  Aligned_cols=206  Identities=25%  Similarity=0.427  Sum_probs=142.7

Q ss_pred             ceeEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCC-------CCcccceE
Q psy3170         278 VKWFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIA  349 (525)
Q Consensus       278 ~~~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DIA  349 (525)
                      ..++|+||||+++||||||||+... ....+.|++|..        .....|+++++||+|+...       ..+.||||
T Consensus        30 ~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~g~~--------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~DIA  101 (287)
T d1rrka1          30 GHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE--------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVA  101 (287)
T ss_dssp             CCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTC--------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCE
T ss_pred             CcEEEEEEEecCCEEEEChhheecCCCcceEEEEeCCe--------eceeeeEEEEecCCccccccccccCCCcccccEE
Confidence            3689999999999999999999654 233456666643        1234599999999997421       34558999


Q ss_pred             EEEECCCcccCCCccceecCCCCCC-------CCCcEEEEEeeeccC------CCCcccccceEEEEEeeChhhhh---c
Q psy3170         350 LLKIAPPVEFSETLKPACLNRAHNV-------KSPTAIASGFGKLNY------FDTKESLRLMKVVLDIINNDTCS---K  413 (525)
Q Consensus       350 ll~L~~~~~~~~~v~picL~~~~~~-------~~~~~~~~Gwg~~~~------~~~~~~~~l~~~~v~~~~~~~C~---~  413 (525)
                      ||||++|+.|+++|+|||||.....       ....+...+|+....      ........++...+.+.+...|.   .
T Consensus       102 Ll~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  181 (287)
T d1rrka1         102 LIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER  181 (287)
T ss_dssp             EEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHH
T ss_pred             EEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCccccccccCCceeEEEEEEEeccchhhhhhh
Confidence            9999999999999999999875321       111111112211111      01123445666667666654432   1


Q ss_pred             cc-------------CCCCCCcEEEEeCCC--CcCCCcCCCCCcceeecCCCceeEEEEEEeecC--CCC--------CC
Q psy3170         414 QE-------------TTLISSQLCATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR--QCG--------HA  468 (525)
Q Consensus       414 ~~-------------~~~~~~~~Ca~~~~~--~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~--~c~--------~~  468 (525)
                      ..             ..+.+.||||+...+  +.++|.|||||||++..++  +|+|+||+|||.  .|.        ..
T Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~~--~~~lvGI~S~G~~~~~~~~~~~~~~~~  259 (287)
T d1rrka1         182 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRS--RFIQVGVISWGVVDVCKNQKRQKQVPA  259 (287)
T ss_dssp             GGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETT--EEEEEEEEEEESCCCC--------CCT
T ss_pred             hhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEecCC--eEEEEEEEEecCCcCcCCCCCCCcCCC
Confidence            11             115678999986433  4678999999999987665  899999999974  232        12


Q ss_pred             CCceEEEEcCCchhhhccccccccc
Q psy3170         469 NTPAIYTRVSYYVPWIVHTVWPDQF  493 (525)
Q Consensus       469 ~~p~v~t~v~~~~~WI~~~i~~~~~  493 (525)
                      ..|.+||||+.|++||+++|+.+.+
T Consensus       260 ~~~~vyt~V~~y~~WI~~~i~~~~~  284 (287)
T d1rrka1         260 HARDFHINLFQVLPWLKEKLQDEDL  284 (287)
T ss_dssp             TCEEEEEEGGGGHHHHHHHTTTSSC
T ss_pred             CCCcEEEEHHHHHHHHHHHhcCCCC
Confidence            4689999999999999999987654

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=2.5e-38  Score=294.28  Aligned_cols=197  Identities=26%  Similarity=0.431  Sum_probs=151.4

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCC-CCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      +.|+||||+++||||||||+.+. ....+.|++|.. +.   .......++.+.+||.|+.  ....||||||||++++.
T Consensus        20 ~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~v~~g~~-~~---~~~~~~~i~~~~i~~~~~~--~~~~~DIAllkL~~~~~   93 (223)
T d1os8a_          20 MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV-DL---QSSSAVKVRSTKVLQAPGY--NGTGKDWALIKLAQPIN   93 (223)
T ss_dssp             TTEEEEEEETTEEEECGGGSSCSEECCCCEEEESCS-BT---TCTTCEEEEEEEEEECTTC--SSSSCCCEEEEESSCCC
T ss_pred             ccEeEEEEeCCEEEEChhhccCCCCcceeeeccccc-cc---cccccccceeeeeeecccc--cccceeeeeeeeeeeee
Confidence            45999999999999999999765 345567777765 22   2233444666677777776  55679999999999887


Q ss_pred             cCCCccceecC-CCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC--CCCCcEEEEeC-CCCcCC
Q psy3170         359 FSETLKPACLN-RAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT--LISSQLCATVM-AGGKDT  434 (525)
Q Consensus       359 ~~~~v~picL~-~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~--~~~~~~Ca~~~-~~~~~~  434 (525)
                      +     |+|++ ......+..+.+.||+...... ..+..++...+..++.++|+..+..  ....++|+... .+..+.
T Consensus        94 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
T d1os8a_          94 Q-----PTLKIATTTAYNQGTFTVAGWGANREGG-SQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDT  167 (223)
T ss_dssp             S-----CCCEECCSSTTSSSEEEEEESSCSSTTC-CCCSBCEEEEEEEECHHHHHHHHGGGSCTTTEEEESCTTTCCCBC
T ss_pred             c-----ccccccccccccccceEEeecccccccc-ccccccccceeeEeCHHHhhhhhcCCCccCcceeeeccccCCcCc
Confidence            5     34443 3333567788999998776544 5667788999999999999877644  34555555443 345688


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhccccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      |.+|+|+||++..++ .+|+|+||+||+..|+..+.|++|+||++|.+||+++|+
T Consensus       168 c~~~~G~pl~~~~~~-~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~k  221 (223)
T d1os8a_         168 CQGDSGGPMFRKDNA-DEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAAR  221 (223)
T ss_dssp             CTTCTTCEEEEECTT-SCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHHH
T ss_pred             cccccccceEEecCC-CeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            999999999887554 499999999999999878899999999999999999985

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.5e-38  Score=291.99  Aligned_cols=199  Identities=32%  Similarity=0.556  Sum_probs=146.2

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEE-EEE-----------EEeCCCCCCCCCCccc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQ-----------NILHPNYTTEGTSQYH  346 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~-v~~-----------i~~hp~y~~~~~~~~~  346 (525)
                      +++|+||||+++||||||||+.+    ...+++|.. ............ +..           +..||.|+.  ....+
T Consensus        14 ~~~C~GtLIs~~~VLTaAhCv~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   86 (228)
T d1sgfa_          14 KYQCGGVLLDRNWVLTAAHCYND----KYQVWLGKN-NFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPE--DDYSN   86 (228)
T ss_dssp             SCCEEEEECSSSEEEECGGGCCS----CCEEEECC-----C-CTTCEEEEEEEEEECTTSCGGGC----CCTT--CBCTT
T ss_pred             cEEEEEEEEcCCEEEeCHHHccC----CceEEEeee-eeccccccceeeeeeeeccccceeeeeecccCCCCc--ccccc
Confidence            57899999999999999999965    345666655 222222222222 322           457888877  67789


Q ss_pred             ceEEEEECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCC-CCCCcEEE
Q psy3170         347 DIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETT-LISSQLCA  425 (525)
Q Consensus       347 DIAll~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~-~~~~~~Ca  425 (525)
                      |||||+|++|+.|+++++|||||.........+...||+.+.......+..|+...+.+++.+.|++.+.. ..+.++|+
T Consensus        87 Diall~L~~~v~~~~~v~pi~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~  166 (228)
T d1sgfa_          87 DLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCA  166 (228)
T ss_dssp             CCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEC-------C---------CEEEEEECTHHHHTTCSSBCCTTEEEE
T ss_pred             ceeEEeeccccccCCceeeEecCccccccCcceEEEeeeeccCCccCCCCccEEEEEEEeCHHHhhhhccCCcccceEEe
Confidence            99999999999999999999999988888888999999987766556677899999999999999987765 45678898


Q ss_pred             EeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         426 TVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       426 ~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      +...++...|.+|+||||++      +++|+||+|+|. .|+....|++||||++|++||+++|+.
T Consensus       167 ~~~~~~~~~~~~d~G~pl~~------~~~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~~  226 (228)
T d1sgfa_         167 GEMDGGSYTCEHDSGGPLIC------DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN  226 (228)
T ss_dssp             EECSSSEEECCCCTTCEEEE------TTEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHS
T ss_pred             ccCCCCccccCCCcCCcEEE------eCEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhH
Confidence            88777788999999999998      679999999984 687788899999999999999999964

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.88  E-value=3.6e-25  Score=203.36  Aligned_cols=181  Identities=17%  Similarity=0.275  Sum_probs=120.4

Q ss_pred             eEeEEEEEeCCEEEecCCCCCCCCCC----ceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECC
Q psy3170         280 WFCGGSLISPNYVMTAAHCITSPLGK----PRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAP  355 (525)
Q Consensus       280 ~~C~GtLIs~~~VLTAAhCv~~~~~~----~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~  355 (525)
                      ..|+|+||+++||||||||+.+....    ...+..+..   ..........+.+++.||.|... ....+|+|||+|+.
T Consensus        30 ~~CsG~LI~~~~VLTaaHCv~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DiAll~l~~  105 (215)
T d1p3ca_          30 SSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMN---DSTAVNGSANMTEFYVPSGYINT-GASQYDFAVIKTDT  105 (215)
T ss_dssp             CEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCB---TTBCTTCCEEEEEEECCHHHHHH-CCGGGCCEEEEESS
T ss_pred             eEEEEEEEeCCEEEECcceeccCCCCceeeeEEEecccc---CCCCCceeEEEeEEEEecccccC-CCccceEEEEEecc
Confidence            56999999999999999999765322    234444433   12222334558899999988642 34568999999999


Q ss_pred             CcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         356 PVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       356 ~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      ++.+  ...+++++......+..+.+.||+...... .....+..........           ....+.    ...+.|
T Consensus       106 ~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~  167 (215)
T d1p3ca_         106 NIGN--TVGYRSIRQVTNLTGTTIKISGYPGDKMRS-TGKVSQWEMSGSVTRE-----------DTNLAY----YTIDTF  167 (215)
T ss_dssp             CHHH--HHCCCCBCCCSCCTTCEEEEEECCHHHHHH-HSSCCCEEEEEECCEE-----------CSSEEE----ECCCCC
T ss_pred             CCCc--cccccccccccccCCceeEEEcCCCCcCCC-cccceeeEeeeccccc-----------ccccce----eecccC
Confidence            8764  345667777777788999999998654322 1111122211111110           111111    134789


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCCCCC-CCCceEEEEcCCchhhhccc
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQCGH-ANTPAIYTRVSYYVPWIVHT  487 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~-~~~p~v~t~v~~~~~WI~~~  487 (525)
                      .|||||||+.   .  +++|+||+|+|..|+. ...|.+|++|.+|++||++.
T Consensus       168 ~G~SGgPl~~---~--~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~~  215 (215)
T d1p3ca_         168 SGNSGSAMLD---Q--NQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKAQ  215 (215)
T ss_dssp             TTCTTCEEEC---T--TSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHTC
T ss_pred             CCCccCeEEC---C--CCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHcC
Confidence            9999999974   1  5789999999876653 33478899999999999873

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.85  E-value=3.2e-23  Score=196.33  Aligned_cols=195  Identities=15%  Similarity=0.092  Sum_probs=106.5

Q ss_pred             ceeEeEEEEEe------CCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEE
Q psy3170         278 VKWFCGGSLIS------PNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALL  351 (525)
Q Consensus       278 ~~~~C~GtLIs------~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll  351 (525)
                      ..++|+||||+      ++||||||||+.........++++.. ....  ......+.+..+|+.|+.  ....+|++++
T Consensus        32 g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~~~~~~v~v~~~-~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~  106 (263)
T d1arba_          32 GTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWN-YQNS--TCRAPNTPASGANGDGSM--SQTQSGSTVK  106 (263)
T ss_dssp             TEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEES-CCCS--SCCCTTSGGGGSCCCCCC--CCEEECEEEE
T ss_pred             CcEEEEEEEECCCCCCccceEEEchhhCCCCCCcceEEEEEEE-eecc--cceeeeeeeeecccCccc--eeeecchhee
Confidence            47999999998      67999999999764333445555544 1111  111112334456777765  3444444444


Q ss_pred             EECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCc------ccccceEEEEEeeChhhhhcccC-CCCCCcEE
Q psy3170         352 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTK------ESLRLMKVVLDIINNDTCSKQET-TLISSQLC  424 (525)
Q Consensus       352 ~L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~------~~~~l~~~~v~~~~~~~C~~~~~-~~~~~~~C  424 (525)
                      ++..+..+.    .+.|+.. ..........+|+........      ....+..  +.......|...+. .....++|
T Consensus       107 ~~~~~~Dia----ll~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c  179 (263)
T d1arba_         107 ATYATSDFT----LLELNNA-ANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKR--ISNSTSPTSFVAWGGGAGTTHLN  179 (263)
T ss_dssp             EEETTTTEE----EEEESSC-CCGGGCCEEBCEECCSCCCSCEEEEECGGGCSCE--EEEECSCCEEECTTSSSCSSEEE
T ss_pred             ecCCCccee----eeecccc-cccccceeeeccCccccCCccccceeccccceee--eecccccchhhccCCCCCccEEE
Confidence            444333211    1111110 011112233344433221100      0011111  11112112222222 25678899


Q ss_pred             EEeCCCCcCCCcCCCCCcceeecCCCceeEEEEEEeecC-CCC--CCCCceEEEEcCCchhhhccccc
Q psy3170         425 ATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR-QCG--HANTPAIYTRVSYYVPWIVHTVW  489 (525)
Q Consensus       425 a~~~~~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~-~c~--~~~~p~v~t~v~~~~~WI~~~i~  489 (525)
                      +....++.+.|.|||||||++.     .+.++||+|++. .|.  ..+.|++|+||++|.+||...+.
T Consensus       180 ~~~~~~~~~~c~GDSGGPL~~~-----~g~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~~~~  242 (263)
T d1arba_         180 VQWQPSGGVTEPGSSGSPIYSP-----EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGAAAS  242 (263)
T ss_dssp             EECCTTSCCCCTTCTTCEEECT-----TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSSGGG
T ss_pred             EEecCCCccccCCCCcceEEec-----CCCEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCcchh
Confidence            9987777889999999999863     245888888883 332  14689999999999888876664

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.3e-18  Score=155.05  Aligned_cols=175  Identities=19%  Similarity=0.222  Sum_probs=126.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...   ...+.++..+........+...+..++.||+|+..  +..||||||+|++|+.++++++|+|||.
T Consensus        35 ~VLTaAhCv~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~hp~y~~~--~~~~diAll~l~~~~~~~~~~~~i~l~~  109 (232)
T d1orfa_          35 WVLTAAHCNLNK---RSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPA--TREGDLKLLQLTEKAKINKYVTILHLPK  109 (232)
T ss_dssp             EEEECTTCCCCT---TCEEEESCSBSSSCCTTCEEECEEEEEECTTCCTT--TCTTCCEEEEESSCCCCSSSSCCCCCCS
T ss_pred             EEEEChhhcCCC---CcceeeeeeeccccccccccceEEEEEeccccccc--ccCcceeEeeeccceeeeeeEeeeeecc
Confidence            489999999763   24455555555555566778889999999999875  6789999999999999999999999985


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+.++|||.+...+  ..+..++...+.+.+...|...+...........++|.+...+   ....|..++
T Consensus       110 ~~~~~~~~~~~~~~g~g~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~---~~~~c~gds  184 (232)
T d1orfa_         110 KGDDVKPGTMCQVAGWGRTHNSA--SWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRG---GRDSCNGDS  184 (232)
T ss_dssp             SCCCCCTTCEEEEEESSCSSSSS--CCCSBCEEEEEEEECHHHHTSTTTTTTTTCCCTTEEEEECSSC---CCBCCTTCT
T ss_pred             cccccccCceeeeccccccCCcc--cCChhheEEEeecCCHHHHhhhhhcccCccccCceEEeccCCC---CcccccccC
Confidence            443  457789999999887654  3456788889999999999876554444455666777754321   134565554


Q ss_pred             hhcccCCcccccccccceeEe-eccccCCCCC
Q psy3170         160 KIQDESPIALAPALVGGVRYV-RTQCDILAMP  190 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~-~~~Cg~~~~~  190 (525)
                          ++|+.+...+.|..++. ...|+....+
T Consensus       185 ----G~Pl~~~~~l~GI~S~g~~~~c~~~~~p  212 (232)
T d1orfa_         185 ----GSPLLCEGVFRGVTSFGLENKCGDPRGP  212 (232)
T ss_dssp             ----TCEEEETTEEEEEEEECCTTCTTCTTSC
T ss_pred             ----CCeEEEcCEEEEEEEEECCCCCCCCCCC
Confidence                57777766777777764 3457644433

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=153.61  Aligned_cols=165  Identities=22%  Similarity=0.315  Sum_probs=123.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+    ...|++|.......+...+...+.++++||+|+..  +..||||||+|++++.++++++|+|||.
T Consensus        35 ~VLTaAhCv~~----~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~y~~~--~~~~diAll~l~~~~~~~~~v~pi~l~~  108 (221)
T d1lo6a_          35 WVLTAAHCKKP----NLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAA--SHDQDIMLLRLARPAKLSELIQPLPLER  108 (221)
T ss_dssp             EEEECGGGCCT----TCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCCBCC
T ss_pred             EEEECeecccc----ccceeeceeeecccCccceeeeccccccCCCcccc--cccceeEEeecccccceeeeEEeccccc
Confidence            48999999854    46899998888777777788999999999999875  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|.++|||.+....   .+..++...+.+++...|...+...    ....+.++...   ......|..++  
T Consensus       109 ~~~~~~~~~~~~Gwg~~~~~~---~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~~~---~~~~~~c~gd~--  176 (221)
T d1lo6a_         109 DCSANTTSCHILGWGKTADGD---FPDTIQCAYIHLVSREECEHAYPGQ----ITQNMLCAGDE---KYGKDSCQGDS--  176 (221)
T ss_dssp             CTTCCCCEEEEEESSCCTTSS---CCSBCEEEEEEEECHHHHHHHSTTT----CCTTEEEEECT---TTCCBCCTTTT--
T ss_pred             cCCcccceEEEEecccccCCC---CCccceEEEEEEecHHHHHHHcCCC----ccCCceeeecc---ccCCCCccCCC--
Confidence            777788899999999876543   4557788888888988887765431    11222222111   11234466554  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...+.|..++....|+.
T Consensus       177 --G~Pl~~~~~l~Gi~S~g~~~c~~  199 (221)
T d1lo6a_         177 --GGPLVCGDHLRGLVSWGNIPCGS  199 (221)
T ss_dssp             --TCEEEETTEEEEEEEECCSSCCC
T ss_pred             --CCcEEECCEEEEEEEEccCCCCC
Confidence              56776666677777776666753

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.6e-17  Score=150.15  Aligned_cols=166  Identities=21%  Similarity=0.264  Sum_probs=116.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+..    ....................+.++++||+|+..  ...+|||||+|++++.++++++|||||.
T Consensus        34 ~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~hp~y~~~--~~~~diAll~L~~~v~~~~~~~picL~~  107 (223)
T d1j16a_          34 WVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRE--TYNNDIMLIKLSSPVKLNARVATVALPS  107 (223)
T ss_dssp             EEEECGGGCCSSC----EEEESCSBTTSCCSCCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCBCCS
T ss_pred             EEEeCHHHCCCcC----CceeeeeeeccccccceeeeeeeEEecCCCCcc--ccceeEEEEEecCccccceeEEEEecCC
Confidence            4899999997642    111222222333445667889999999999875  5679999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..++++|||.+...+. ..+..++...+.+.+...|...+..    .....++|++...+   ....|..++  
T Consensus       108 ~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~C~~~~~~---~~~~c~gd~--  177 (223)
T d1j16a_         108 SCAPAGTQCLISGWGNTLSSGV-NEPDLLQCLDAPLLPQADCEASSSF----IITDNMVCVGFLEG---GKDACQGDS--  177 (223)
T ss_dssp             SCCCTTCEEEEEESSCCCSSSC-CCCSBCEEEEEEEECHHHHHSSSSC----CCCTTEEEESCTTC---SCBCCTTCT--
T ss_pred             cCCCCCCEEEEEeeeeeeCCCc-cCcceeeEEEEEEEEhhHhhccccc----eeCCCceEEecCCC---CCcccCCcc--
Confidence            8778889999999998765543 4556788888888898888765543    23445667654321   223465554  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...++|.+++. ..|+.
T Consensus       178 --g~pl~~~~~L~Gi~s~~-~~~~~  199 (223)
T d1j16a_         178 --GGPVVCNGELQGIVSWG-YGCAL  199 (223)
T ss_dssp             --TCEEEETTEEEEEEEEC-SSSSC
T ss_pred             --CCcEEEeeEEEEEEEEc-cCCCC
Confidence              45666666666765554 34543

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.70  E-value=3.8e-17  Score=150.25  Aligned_cols=162  Identities=16%  Similarity=0.138  Sum_probs=121.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ....+++|...........+...|.++++||+|+..  ...||||||+|++|+.++++++|+||+.
T Consensus        35 ~VLTaAhCv~~~--~~~~~~~g~~~~~~~~~~~~~~~v~~i~~~~~y~~~--~~~~diAll~l~~~~~~~~~~~pi~l~~  110 (226)
T d1azza_          35 WILTAAHCMDGA--GFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSF--VISNDIAVIRLPVPVTLTAAIATVGLPS  110 (226)
T ss_dssp             EEEECHHHHTTC--SCEEEEESCSBSSSCCTTCEEEEECCEEECTTCBTT--TTBSCCEEEECSSCCCCCSSSCCCBCCS
T ss_pred             EEEEChhhccCC--cceEEEeccceeccCCcceEEEEeeeeeeccccccc--cccchhhhhhcCCccceeeccccccccc
Confidence            589999999763  557788998887776777788999999999999875  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      ........+.++|||.+..... .....++...+.+++...|...+..     ....+.+.....    ....|..++  
T Consensus       111 ~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~~~~----~~~~c~gds--  178 (226)
T d1azza_         111 TDVGVGTVVTPTGWGLPSDSAL-GISDVLRQVDVPIMSNADCDAVYGI-----VTDGNICIDSTG----GKGTCNGDS--  178 (226)
T ss_dssp             SCCCTTCEEEEEESSCSSTTCS-SSCSBCEECCEEEECHHHHHHHHSC-----CCTTEEEECCTT----TCBCCTTCT--
T ss_pred             cccccccceeeecccccCCCcC-ccccEeEEEEEEEEeHHHhhhhhCc-----ccccceeccccC----CCccccCCc--
Confidence            8888888899999998765443 3456778888999998888775532     112222222111    123466554  


Q ss_pred             cccCCcccccccccceeEee
Q psy3170         162 QDESPIALAPALVGGVRYVR  181 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~  181 (525)
                        ++|+.....+.|.+++..
T Consensus       179 --G~Pl~~~~~l~Gi~S~g~  196 (226)
T d1azza_         179 --GGPLNYNGLTYGITSFGA  196 (226)
T ss_dssp             --TCEEEETTEEEEEEEEEE
T ss_pred             --CCCEEEcCEEEEEEEEeC
Confidence              567766666777666654

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.7e-17  Score=148.07  Aligned_cols=170  Identities=15%  Similarity=0.206  Sum_probs=120.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+.....+.+..+..+........+..+|.+++.||.|+..  ..+||||||+|++|+.++++++|+|||.
T Consensus        35 ~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~i~~~~~y~~~--~~~~diAll~l~~~~~~~~~v~p~~l~~  112 (228)
T d1bioa_          35 WVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD--TIDHDLLLLQLSEKATLGPAVRPLPWQR  112 (228)
T ss_dssp             EEEECGGGGGGCSSSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTT--CCTTCCEEEEESSCCCCBTTBCCCCBCC
T ss_pred             EEEECceeeeccccceeeeeccccccccCCcceeeccceeeeeeecccCC--CcccceehhhccccceeeeEEeeecccc
Confidence            58999999988766777888887776666667788999999999999875  6789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+.+.|||.+...+  ..+..++...+.+.+...|...+....   ......|+...    .....|..++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~gds  183 (228)
T d1bioa_         113 VDRDVAPGTLCDVAGWGIVNHAG--RRPDSLQHVLLPVLDRATCNRRTHHDG---AITERLMCAES----NRRDSCKGDS  183 (228)
T ss_dssp             SCCCCCTTCEEEEEESSCCSTTC--CCCSBCEEEEEEEECHHHHHSTTTTTT---CCCTTEEEECC----SSCBCCTTTT
T ss_pred             cccccccCceEEEecceeecCCC--CCCCcceEEEEEEeCHHHHhhhhcccc---cccccceeecc----cCCCcccCCc
Confidence            443  456778999999886654  345667778888887777655433211   11111111111    1123455444


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...++|.+++....|+.
T Consensus       184 ----G~Pl~~~~~LvGi~S~g~~~c~~  206 (228)
T d1bioa_         184 ----GGPLVCGGVLEGVVTSGSRVCGN  206 (228)
T ss_dssp             ----TCEEEETTEEEEEECCSCCCSSC
T ss_pred             ----CccEEEcCEEEEEEEECCCCCCC
Confidence                56666666677777776666754

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=99.69  E-value=1.4e-16  Score=147.49  Aligned_cols=170  Identities=20%  Similarity=0.262  Sum_probs=118.7

Q ss_pred             ceeeeccCcccCC---CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeee
Q psy3170           2 VNNHAAHCITSPL---GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC   78 (525)
Q Consensus         2 ~~lTAAHC~~~~~---~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pic   78 (525)
                      .|||||||+....   ...+.+..+...........+...|.++++||+|+..  ...||||||+|++++.+++.++|||
T Consensus        39 ~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~h~~y~~~--~~~~diAll~l~~~v~~~~~~~~i~  116 (237)
T d2f91a1          39 YAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYN--LLDNDISLLKLSGSLTFNDNVAPIA  116 (237)
T ss_dssp             EEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCB
T ss_pred             EEEECcccccccCCccccceeEEeeecccccccCcceeeeEEEEEEccccCCC--ccccceeeeccccccccCCceeeee
Confidence            5899999996642   3456666666655555666778999999999999975  6789999999999999999999999


Q ss_pred             cCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          79 LNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        79 L~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ++......+..+.++|||.+...+  ..+..++...+...+...|...+...   .....++|......   ....|..+
T Consensus       117 ~~~~~~~~~~~~~~~g~g~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~c~~~~~~---~~~~~~gd  188 (237)
T d2f91a1         117 LPEQGHTATGDVIVTGWGTTSEGG--NTPDVLQKVTVPLVSDEDCRADYGAD---EILDSMICAGVPEG---GKDSCQGD  188 (237)
T ss_dssp             CCCTTCCCCSEEEEEESCCSSTTC--CCCSBCEEEEEEEECHHHHHHHHCTT---TSCTTEEEECCTTC---CCBCCTTC
T ss_pred             ccccCcccccceeeccccccCCCC--cCCchheEEEEEEeCHHHHhhhccCC---cccCceeEeecCCC---ccccccCC
Confidence            998877778889999999986654  34567788888888888887654321   23344555443211   11234433


Q ss_pred             hhhcccCCcccccc----cccceeEeeccccC
Q psy3170         159 SKIQDESPIALAPA----LVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~~----~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+.+...    ++|..++. ..|+.
T Consensus       189 s----G~Pl~~~~~~~~~L~Gi~S~g-~~c~~  215 (237)
T d2f91a1         189 S----GGPLAASDTGSTYLAGIVSWG-YGCAR  215 (237)
T ss_dssp             T----TCEEEECTTSSCEEEEEEEEE-SSSSC
T ss_pred             C----CCeEEEecCCeEEEEEEEEeC-CCCCC
Confidence            3    445544332    45655554 45654

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=146.73  Aligned_cols=174  Identities=14%  Similarity=0.172  Sum_probs=125.5

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+.. ...+.|..+...........+.+.+..++.||+|+..  ...+|||||+|++++.++++++||||+
T Consensus        37 ~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~~--~~~~diAll~l~~~~~~~~~~~picL~  114 (240)
T d1mzaa_          37 WVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSD--PQSNDIMLVKLQTAAKLNKHVKMLHIR  114 (240)
T ss_dssp             EEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEECCCSSCS--SSSSCCEEEEESSCCCCBTTBCCCCBC
T ss_pred             EEEECeEcccccCCcceeEEEEeecccCcCCccceeEeeeeeeeecccccc--ccCcceEEEeecceeeeeecccccccc
Confidence            5899999997753 3457788887776666666778899999999999875  667999999999999999999999998


Q ss_pred             CCCC-CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          81 RAHN-VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        81 ~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      .... .....+.+.|||.+..... ..+..++...+.+.+...|........-......++|++...+   ....|..++
T Consensus       115 ~~~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~c~~~~~~---~~~~C~gDs  190 (240)
T d1mzaa_         115 SKTSLRSGTKCKVTGWGATDPDSL-RPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKG---QKDSCKGDA  190 (240)
T ss_dssp             SSCCCCTTCEEEEEECCCSSTTCS-SCCSBCEEEEEEECCHHHHTSTTTTTTTTCCCTTEEEEECTTS---CCCCCTTCT
T ss_pred             ccccccceeeEEEEEeccccCCcC-cCCcccEEEEEEEecHHHhhhhhhccCCcccccceEEeccCCC---CccCccCCC
Confidence            6554 4456788999998764332 4566788889999999888765433222233455666654321   234577765


Q ss_pred             hhcccCCcccccccccceeEeeccccC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.+...+.|.+++. ..|+.
T Consensus       191 ----GgPl~~~~~l~Gi~S~g-~~c~~  212 (240)
T d1mzaa_         191 ----GGPLICKGVFHAIVSGG-HECGV  212 (240)
T ss_dssp             ----TCEEEETTEEEEEECSS-CCSSC
T ss_pred             ----CCeEEECCEEEEEEEeC-CCCCC
Confidence                67887766666655543 45654

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.4e-16  Score=146.40  Aligned_cols=162  Identities=23%  Similarity=0.244  Sum_probs=119.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..    ...|++|..++.......+...|.+++.||+|+..  ...||||||+|++|+.++++|+||||+.
T Consensus        39 ~VLTaAhC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~~~diall~l~~~i~~~~~v~picl~~  112 (227)
T d1fi8a_          39 FVLTAAHCSGS----KIQVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSK--TISNDIMLLKLKSKAKRSSAVKPLNLPR  112 (227)
T ss_dssp             EEEECGGGCCS----EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCCSSCCCCCCCC
T ss_pred             EEEEecccccc----cceeeeeecccccCCCCceEEEEEEEEecccccCc--cccchhhhhhccCceeeeeeEEEEEecc
Confidence            58999999853    46799999888777777788999999999999876  6789999999999999999999999986


Q ss_pred             CC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ..  ...+..+.+.|||......  ..+..++...+.+++...|...+...   ......+|++...   .....|..++
T Consensus       113 ~~~~~~~~~~~~~~g~g~~~~~~--~~~~~l~~~~~~~~~~~~c~~~~~~~---~~~~~~~~~~~~~---~~~~~c~gds  184 (227)
T d1fi8a_         113 RNVKVKPGDVCYVAGWGKLGPMG--KYSDTLQEVELTVQEDQKCESYLKNY---FDKANEICAGDPK---IKRASFRGDS  184 (227)
T ss_dssp             TTCCCCTTCEEEEEESCBSSTTC--CBCSBCEEEEEEBCCHHHHHHHTTTT---CCTTTEEEESCTT---SCCBCCTTCT
T ss_pred             cCcccCCCCEEEEEeeccccCCC--CCCceeeEEEEEEEEchhhhhhhhcc---cccceeeeeeecc---ccCCCcCCCc
Confidence            54  3557789999999876554  34567888888888888887654332   1222333443221   1233566554


Q ss_pred             hhcccCCcccccccccceeEee
Q psy3170         160 KIQDESPIALAPALVGGVRYVR  181 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~  181 (525)
                          ++|+.+...+.|.+++..
T Consensus       185 ----GgPl~~~~~l~Gi~S~g~  202 (227)
T d1fi8a_         185 ----GGPLVCKKVAAGIVSYGQ  202 (227)
T ss_dssp             ----TSEEEETTEEEEEEEEEE
T ss_pred             ----CCEEEECCEEEEEEEEcC
Confidence                577777666777776654

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8e-17  Score=148.15  Aligned_cols=119  Identities=19%  Similarity=0.228  Sum_probs=98.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ....|++|...........+.+.|.+++.||.|+..  ...||||||+|++|+.++++|+|+||+.
T Consensus        38 ~VLTaAhC~~----~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~~~DiAll~L~~~i~~~~~v~~~~l~~  111 (227)
T d1fq3a_          38 FVLTAAHCWG----SSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPK--NFSNDIMLLQLERKAKRTRAVQPLRLPS  111 (227)
T ss_dssp             EEEECGGGCC----SEEEEEESCSBTTTTCTTCEEEEEEEECCCTTCCTT--TTTTCCEEEEESSCCCCCSSCCCCCCCC
T ss_pred             EEEeCEeecc----ccccceeccccccccccccEEEEEEEEEecccCCCC--CCCcchhhhhcccccccceeEEEEeecc
Confidence            4899999985    347789998887766777788999999999999876  6789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccc
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYV  128 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  128 (525)
                      ...  ..+..+.++|||.+...+  .....++...+.+.+...|...+.
T Consensus       112 ~~~~~~~~~~~~~~G~~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~  158 (227)
T d1fq3a_         112 NKAQVKPGQTCSVAGWGQTAPLG--KHSHTLQEVKMTVQEDRKCESDLR  158 (227)
T ss_dssp             SSCCCCTTCEEECCCSCCSTTTS--CCCSBCCBCEEECCCHHHHTTTCT
T ss_pred             cccccCCCCEEEEEeeccccCcc--cccccceEEEEEEEcHHHhhhhhc
Confidence            443  456779999999886554  345678888999999999977654

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.5e-16  Score=147.32  Aligned_cols=170  Identities=21%  Similarity=0.291  Sum_probs=123.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC---------CCCCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~nDIALl~L~~~v~~~~   72 (525)
                      .|||||||+..    ...|++|...+.......+.+.+.+++.||+|+..         ...+.||||||||++|+.+++
T Consensus        35 ~VLTaAhCv~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~  110 (237)
T d1ao5a_          35 WVLTAAHCYVD----QYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITD  110 (237)
T ss_dssp             EEEECTTCCCS----SCEEEESCCBSSSCCSSCEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCS
T ss_pred             EEEECHHHcCC----CceEEEEeccccccccccEEEEEEEEeecccccccccccccccCccccccceeeeccCccccccc
Confidence            58999999964    35788998887766677788899999999999753         123468999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      .++|+|||......+..|.++|||....... ..+..+....+...+...|...+..    .+...+.|++...   ...
T Consensus       111 ~~~~i~lp~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~~---~~~  182 (237)
T d1ao5a_         111 VVKPIALPTKEPKPGSKCLASGWGSITPTRW-QKPDDLQCVFITLLPNENCAKVYLQ----KVTDVMLCAGEMG---GGK  182 (237)
T ss_dssp             SSCCCCCCCSCCCTTCEEEEEESCCSSCC-C-CCCSBCEEEEEEEECHHHHHHHCSS----CCCTTEEEEECTT---CSC
T ss_pred             ccceeccCCCCCcccceEEEeeeeeeccccc-cCCccceeeEEEEEehHHhhhhhcC----CCCCCeEEEccCC---CCC
Confidence            9999999988877888999999997655443 3456677777777777777664433    2334455544321   123


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeeccccCC
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDIL  187 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~~  187 (525)
                      ..|.+++    ++|+.+...+.|.+++....|+..
T Consensus       183 ~~c~gds----G~pl~~~~~l~Gi~S~g~~~c~~~  213 (237)
T d1ao5a_         183 DTCRDDS----GGPLICDGILQGTTSYGPVPCGKP  213 (237)
T ss_dssp             BCCTTCT----TCEEEETTEEEEEEEECCSSTTCT
T ss_pred             cccCCCC----CCeeEEccEEEEEEEEecCCCCCC
Confidence            4577665    567776666778777776677543

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.6e-17  Score=151.34  Aligned_cols=175  Identities=19%  Similarity=0.212  Sum_probs=117.4

Q ss_pred             ceeeeccCcccC--CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSP--LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~--~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+.+.  ....+.|..|..+.  .+...+.+.+.++++||+|+.. ....||||||||++|+.++++|+|+|+
T Consensus        33 ~VLTaAhCv~~~~~~~~~~~v~~~~~~~--~~~~~~~~~v~~i~~hp~y~~~-~~~~~DiAll~L~~~~~~~~~v~pic~  109 (242)
T d1q3xa1          33 WVLTAAHAVYEQKHDASALDIRMGTLKR--LSPHYTQAWSEAVFIHEGYTHD-AGFDNDIALIKLNNKVVINSNITPICL  109 (242)
T ss_dssp             EEEECHHHHHHHHTTTCCCEEEESCSBT--TCSCSEEEEEEEEEECTTCCTT-SCCTTCCEEEEESSCCCCBTTBCCCBC
T ss_pred             EEEEChhhccCCCCCcceEEEEeeeeee--ccccccccceeeeEEeeccccc-cccCccccccccCCCccccccEEEEec
Confidence            489999998653  34567777876543  3455677889999999999865 245799999999999999999999999


Q ss_pred             CCCCC----CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccc--cccccceeeccCCcccCCchh
Q psy3170          80 NRAHN----VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQC--DILAMPMIIGGSRAKYGEFPH  153 (525)
Q Consensus        80 ~~~~~----~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~  153 (525)
                      +....    ..+..+...|||....+.   .+..++...+...+...|...+.....  ......++|.+...+   ...
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  183 (242)
T d1q3xa1         110 PRKEAESFMRTDDIGTASGWGLTQRGF---LARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESG---GKD  183 (242)
T ss_dssp             CCGGGGGGSSTTCEEEEEESSCCTTSS---CCSBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSC---CSB
T ss_pred             cccccccccccceeeeeeeccccccCc---cccceeeeeccccCHHHHHhhhhcccccCceeccceeeeeccCC---Ccc
Confidence            85432    345667889998865443   356788888999999899776543211  123334445443221   124


Q ss_pred             hhchhhhhcccCCccccc------ccccceeEeeccccCCCC
Q psy3170         154 QCTQYSKIQDESPIALAP------ALVGGVRYVRTQCDILAM  189 (525)
Q Consensus       154 ~C~~~~~~~~~~~l~~~~------~~~g~v~~~~~~Cg~~~~  189 (525)
                      .|..++    ++|+.+..      .+.|.+++....|+....
T Consensus       184 ~c~gds----Ggpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~  221 (242)
T d1q3xa1         184 SCRGDS----GGALVFLDSETERWFVGGIVSWGSMNCGEAGQ  221 (242)
T ss_dssp             CCTTCT----TCEEEEEETTTTEEEEEEEEEECCSSTTCTTC
T ss_pred             cccccc----ccceEEeeCCCCeEEEEEEEEeCCCCCCCCCC
Confidence            466554    45554322      256666666666754333

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=147.29  Aligned_cols=121  Identities=25%  Similarity=0.349  Sum_probs=94.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+.  ..+.|++|..+........+...|.++++||+|+..  ...||||||||++|+.++++|+|+|||.
T Consensus        36 ~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~~~DiAli~L~~~v~~~~~v~picL~~  111 (240)
T d1autc_          36 WVLTAAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKS--TTDNDIALLHLAQPATLSQTIVPICLPD  111 (240)
T ss_dssp             EEEECGGGSSSC--SCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEECceeccCc--ccceeeccccccccccccceeeeeeccccceeeecc--ccccceeEEEeCCcccCCcccccceecc
Confidence            489999999763  567899999888777777889999999999999875  6789999999999999999999999985


Q ss_pred             CC------CCCCCCEEEEeccccccCCcc---cccccceeeeeeecCccccccc
Q psy3170          82 AH------NVKSPTAIASGFGKLNYFECT---QYSKIQDESPIALAPALVGGVR  126 (525)
Q Consensus        82 ~~------~~~~~~~~v~GWG~~~~~~~~---~~~~~~~~~~~~~~~~~~c~~~  126 (525)
                      ..      ...+..+.++|||.+......   .....+....+.+.+...|...
T Consensus       112 ~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (240)
T d1autc_         112 SGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV  165 (240)
T ss_dssp             HHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHH
T ss_pred             CcccccccccCCCeEEEEeeccccCCCcccccccceeeecceeeEEeehhhhhh
Confidence            42      355778999999987654321   2234556666667666666543

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=143.60  Aligned_cols=117  Identities=17%  Similarity=0.315  Sum_probs=91.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.|++|...... ....+...+.+++.||.|+..  +..||||||+|++|+.++++++|+|||.
T Consensus        38 ~VLTaAhCv~~~~~~~~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~diAll~L~~~~~~~~~v~picl~~  114 (221)
T d1fuja_          38 FVLTAAHCLRDIPQRLVNVVLGAHNVRT-QEPTQQHFSVAQVFLNNYDAE--NKLNDILLIQLSSPANLSASVATVQLPQ  114 (221)
T ss_dssp             EEEECGGGGSSSCGGGEEEEESCSBTTS-CCTTCEEEEEEEEEECCCBTT--TTBCCCEEEEESSCCCCCSSCCCCBCCC
T ss_pred             EEEEeeEEEeecCCccceeeeecccccc-ccccceeeeeeeEEEeeecCC--CCccEEEEEEccccccccceEEEEEecc
Confidence            4899999998876677889999876533 344567889999999999875  6789999999999999999999999997


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccc
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVG  123 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c  123 (525)
                      ...  ..+..+.++||+.+...+  .....+....+.+.+..+|
T Consensus       115 ~~~~~~~~~~~~~~G~~~~~~~~--~~~~~l~~~~~~~~~~~~~  156 (221)
T d1fuja_         115 QDQPVPHGTQCLAMGWGRVGAHD--PPAQVLQELNVTVVTFFCR  156 (221)
T ss_dssp             TTCCCCTTCEEEEEESSBSCSSS--CBCSBCEEEEEEEECTTCC
T ss_pred             cccccCCCceEEEeccccccccc--ccCccceeeeeeeeeeccc
Confidence            543  456678999999876554  3445666666666665544

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.5e-16  Score=143.57  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=119.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC-CCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE-GTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+.    ..+..................+..+..||.|... ...+.||||||+|++|+.++++++|+|||
T Consensus        35 ~VLTaAhC~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~  110 (225)
T d1npma_          35 WVLTAAHCKKQK----YSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA  110 (225)
T ss_dssp             EEEECGGGCCSS----CEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEEC
T ss_pred             EEEEchHhCccc----cccccccccccccCCCcceeeeeeeEEEEeeeccCcccchhhhhhhhccccccccccccccccc
Confidence            589999999653    2344444433344455567778888888866532 12567999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      .........+.++|||.+..... ..+..++...+.+.+...|...+..    .....++|++...    ....|..++ 
T Consensus       111 ~~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~C~~~~~----~~~~c~gd~-  180 (225)
T d1npma_         111 NLCPKVGQKCIISGWGTVTSPQE-NFPNTLNCAEVKIYSQNKCERAYPG----KITEGMVCAGSSN----GADTCQGDS-  180 (225)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEECCHHHHHHHSTT----TCCTTEEEEECTT----CCBCCTTCT-
T ss_pred             cccccCCceEEEeccceecCCCC-CCCCccEEEEEEEecHHHHhhhccC----CcCCCEEEecCCC----CCccccCCC-
Confidence            88777788999999998765442 4567788899999999999776543    2455677765432    124576654 


Q ss_pred             hcccCCcccccccccceeEeeccccC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                         ++|+.+...+.|..++....|+.
T Consensus       181 ---G~pl~~~~~l~Gi~S~g~~~c~~  203 (225)
T d1npma_         181 ---GGPLVCDGMLQGITSWGSDPCGK  203 (225)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSSCB
T ss_pred             ---CceEEEccEEEEEEEECCCCCCC
Confidence               57777766677777776666754

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.66  E-value=3.5e-16  Score=143.46  Aligned_cols=159  Identities=21%  Similarity=0.189  Sum_probs=117.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|...........+...|.++++||+|+..  ...||||||+|++|+.|+++++|+||+.
T Consensus        39 ~VLTaA~C~~----~~~~v~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~diall~L~~~v~~~~~~~p~~l~~  112 (224)
T d3rp2a_          39 FVLTAAHCKG----REITVILGAHDVRKRESTQQKIKVEKQIIHESYNSV--PNLHDIMLLKLEKKVELTPAVNVVPLPS  112 (224)
T ss_dssp             EEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCSS--SCCSCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             eeEecccccc----cccEEEeccccccCccccceeeeEEEEEeccccccc--ccccceeeeeecceeEeccccceEEecc
Confidence            4899999984    568899999887777777888999999999999876  6789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+.+.|||.....+  .....++...+.+++...|...+..     .....+|.+...   .....|..++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~~~~---~~~~~c~~d~  182 (224)
T d3rp2a_         113 PSDFIHPGAMCWAAGWGKTGVRD--PTSYTLREVELRIMDEKACVDYRYY-----EYKFQVCVGSPT---TLRAAFMGDS  182 (224)
T ss_dssp             TTCCCCTTCEEEEEESSEEETTE--EECSBCEEEEEEEECGGGTTTTTCC-----CTTTEEEECCTT---SCCBCCTTTT
T ss_pred             cccccCCCcEEEEeeeeeeecCC--CccceeeEEEEEccCHHHhhhcccc-----cccceeeeccCc---ccccCcCCCc
Confidence            543  456778999999876654  2345678888999999999765432     122334433221   1223466554


Q ss_pred             hhcccCCcccccccccceeEe
Q psy3170         160 KIQDESPIALAPALVGGVRYV  180 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~  180 (525)
                          ++|+.+...+.|.+++.
T Consensus       183 ----G~Pl~~~~~l~Gi~S~g  199 (224)
T d3rp2a_         183 ----GGPLLCAGVAHGIVSYG  199 (224)
T ss_dssp             ----TCEEEETTEEEEEEEEC
T ss_pred             ----CCeEEEcCEEEEEEEEC
Confidence                56776655566666664

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-16  Score=143.09  Aligned_cols=161  Identities=13%  Similarity=0.132  Sum_probs=114.8

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.........+.++...+...+.......+..++.||.|...  ...||||||||++|+.++++++|+||+.
T Consensus        35 ~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DIAll~L~~~i~~~~~~~~~~l~~  112 (225)
T d1a7sa_          35 FVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQ--QNLNDLMLLQLDREANLTSSVTILPLPL  112 (225)
T ss_dssp             EEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSSCBTT--TTBSCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEECeeeeeeccccceeeEEeeeecccccccccceeeeeeeeeeecccc--ccccccchhhcCCcccccccceeEEeec
Confidence            48999999988766778899998877766666777888999999999875  6789999999999999999999999975


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+.++|||.+....  .....++...+.+.+...|...+... +....              ....|..++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~--------------~~~~c~gds  175 (225)
T d1a7sa_         113 QNATVEAGTRCQVAGWGSQRSGG--RLSRFPRFVNVTVTPEDQCRPNNVCT-GVLTR--------------RGGICNGDG  175 (225)
T ss_dssp             TTCCCCTTCEEEEEESCCSSTTC--CCCSSCEEEEEEECCGGGSCTTEEEE-ECSSS--------------SCBCCTTCT
T ss_pred             cccccCCCceeEecccccccccc--ccccceeEEEEEEeehhhccccccee-eeccc--------------ccccccCCC
Confidence            433  456789999999876554  34567788888888888886543221 00001              112344433


Q ss_pred             hhcccCCcccccccccceeEeecccc
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                          ++|+.+...+.|..++....|+
T Consensus       176 ----G~Pl~~~~~l~Gi~S~~~~~c~  197 (225)
T d1a7sa_         176 ----GTPLVCEGLAHGVASFSLGPCG  197 (225)
T ss_dssp             ----TCEEEETTEEEEEEEEECSSTT
T ss_pred             ----CCCEEEeCEEEEEEEECCCCCC
Confidence                4566555556777777666664

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=5.3e-16  Score=142.04  Aligned_cols=165  Identities=18%  Similarity=0.252  Sum_probs=121.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+    ...+++|...........+...+.++++||.|+..  ...||||||+|++++.+++.++|+||+.
T Consensus        34 ~VLTaAhC~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~diAll~l~~~~~~~~~~~p~cl~~  107 (223)
T d1hj9a_          34 WVVSAAHCYKS----GIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPT  107 (223)
T ss_dssp             EEEECGGGCCS----SCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCBCCS
T ss_pred             EEEeCeeECCC----cCcceecccccccccceeeeeceeeEEeccccccc--cccchhhhhhcccceeeeeeeecccccc
Confidence            58999999954    34567887776666666778999999999999875  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      ........+.++|||.+..+.. ..+..++...+.+.+...|...+..    ......+|++...+   ....|.+++  
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~c~~~~~~---~~~~~~gd~--  177 (223)
T d1hj9a_         108 SCASAGTQCLISGWGNTKSSGT-SYPDVLKCLKAPILSDSSCKSAYPG----QITSNMFCAYGLEG---KGDSCQGDS--  177 (223)
T ss_dssp             SCCCTTCEEEEEESSCCCSSSC-CCCSSCEEEEEECCCHHHHHHHSTT----TCCTTEEECCCCCC---CCCCCTTCT--
T ss_pred             ccccccceEEEEeeccccCCCC-CCCccceEEEEeecCHHHHHHHhCC----cccccceEEeecCC---CcccccCCC--
Confidence            8777788899999998765432 4567788888999998889776643    23344555544322   123455443  


Q ss_pred             cccCCcccccccccceeEeecccc
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                        ++|+.....++|.+++. ..|+
T Consensus       178 --g~pl~~~~~L~Gi~S~g-~~c~  198 (223)
T d1hj9a_         178 --GGPVVCSGKLQGIVSWG-SGCQ  198 (223)
T ss_dssp             --TCEEEETTEEEEEEEEC-SCCC
T ss_pred             --CceeEEeCEEEEEEEEc-CCCC
Confidence              45666655667766654 4453

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=99.65  E-value=5.4e-16  Score=141.99  Aligned_cols=165  Identities=20%  Similarity=0.231  Sum_probs=116.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+..  ...  .................+.+++.||.|...  ...||||||+|++|+.+++.++|||||.
T Consensus        34 ~VLTAAhCv~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~diALl~l~~~v~~~~~~~picl~~  107 (222)
T d1hj8a_          34 WVVSAAHCYKSRV--EVR--LGEHNIKVTEGSEQFISSSRVIRHPNYSSY--NIDNDIMLIKLSKPATLNTYVQPVALPT  107 (222)
T ss_dssp             EEEECGGGCCSSC--EEE--ESCSBTTSCCSCCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCSSSCCCCBCCS
T ss_pred             EEEeCceeccccc--Ccc--eeeccccccCCccccccceEEEeccccccc--ccCCcEEEEecccceeeeceeEEEECCC
Confidence            4899999997642  222  222222233344556777888999999865  6689999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..+.+.|||.+....  .....++...+.+++...|...+..    ......+|.+...+   ....|.+++  
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~C~~~~~~---~~~~c~gds--  176 (222)
T d1hj8a_         108 SCAPAGTMCTVSGWGNTMSST--ADSNKLQCLNIPILSYSDCNNSYPG----MITNAMFCAGYLEG---GKDSCQGDS--  176 (222)
T ss_dssp             SCCCTTCEEEEEESSCCCCSS--CCTTBCEEEEEEBCCHHHHHHHSTT----CCCTTEEEESCTTS---SCBCCTTCT--
T ss_pred             cCCCCCceEEEEecccccccc--ccccccEEEEEEEeCHHHHhhhccc----ccccceEEEccCCC---CcccccCCc--
Confidence            887888899999999876544  3456778888899998889776543    23455667654321   234577665  


Q ss_pred             cccCCcccccccccceeEeeccccC
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                        ++|+.+...+.|.+++. ..|+.
T Consensus       177 --GgPl~~~~~l~Gi~S~g-~~~~~  198 (222)
T d1hj8a_         177 --GGPVVCNGELQGVVSWG-YGCAE  198 (222)
T ss_dssp             --TCEEEETTEEEEEEEEC-SSSSC
T ss_pred             --ccEEEECCEEEEEEEEe-cCCCC
Confidence              67777766677766654 34543

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=4e-16  Score=144.08  Aligned_cols=173  Identities=19%  Similarity=0.292  Sum_probs=112.7

Q ss_pred             ceeeeccCcccCC--CCCeEEEEceeecccC-CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeee
Q psy3170           2 VNNHAAHCITSPL--GKPRYVRFGLITKLSY-SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC   78 (525)
Q Consensus         2 ~~lTAAHC~~~~~--~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pic   78 (525)
                      .|||||||+....  ...+.+..|....... ....+.+.|.++++||+|+..  ...||||||||++|+.++++++|||
T Consensus        35 ~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~hp~~~~~--~~~~diAli~L~~~v~~~~~~~pic  112 (235)
T d1ekbb_          35 WLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKR--RKNNDIAMMHLEMKVNYTDYIQPIC  112 (235)
T ss_dssp             EEEECHHHHTTCCSSGGGEEEEESCCBTTCCCCTTCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCCSSCCCCB
T ss_pred             EEEEChhhccCCCCCccceeeeecccccccccCcceeEeeeeeeeeccccccc--CccchhhhhhhcCceecCCceeeEE
Confidence            4899999997642  2346677776655433 345678899999999999876  6789999999999999999999999


Q ss_pred             cCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhc
Q psy3170          79 LNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCT  156 (525)
Q Consensus        79 L~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~  156 (525)
                      ||....  ..+..+.++|||......  .....++...+.+.+...|...+...   .....++|+....+   ....|.
T Consensus       113 Lp~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~c~~~~~~---~~~~c~  184 (235)
T d1ekbb_         113 LPEENQVFPPGRICSIAGWGALIYQG--STADVLQEADVPLLSNEKCQQQMPEY---NITENMVCAGYEAG---GVDSCQ  184 (235)
T ss_dssp             CCCTTCCCCTTCEEEEEESSBSSTTS--CBCSBCEEEEEEBCCHHHHHHHCTTS---CCCTTEEEECCTTC---CCBCCT
T ss_pred             CCCccccCCcceEEEEecccccccCC--cccccceeeEEEEecHHHhccccccc---ccCcccEEEEcCCC---Cccccc
Confidence            986543  456789999999876544  23446677777777666554433221   22334455543221   123465


Q ss_pred             hhhhhcccCCcccccc----cccceeEeeccccCCCC
Q psy3170         157 QYSKIQDESPIALAPA----LVGGVRYVRTQCDILAM  189 (525)
Q Consensus       157 ~~~~~~~~~~l~~~~~----~~g~v~~~~~~Cg~~~~  189 (525)
                      +++    ++|+.+...    +.|..++. ..|+....
T Consensus       185 gds----G~pl~~~~~~~~~l~Gi~S~g-~~~~~~~~  216 (235)
T d1ekbb_         185 GDS----GGPLMCQENNRWLLAGVTSFG-YQCALPNR  216 (235)
T ss_dssp             TCT----TCEEEEEETTEEEEEEEEEEC-SSSSCTTC
T ss_pred             CCC----CCccEEccCCEEEEEEEEEec-CCCCCCCC
Confidence            543    445444332    45555553 34543333

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=99.64  E-value=6.3e-16  Score=142.11  Aligned_cols=167  Identities=21%  Similarity=0.233  Sum_probs=116.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.........+..+.  ........+...+..++.||.|...  ...+||||++|++++.++++++|||||.
T Consensus        36 ~VLTaAhCv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~diAl~~l~~~~~~~~~~~picL~~  111 (228)
T d1fxya_          36 YILTAAHCLYQAKRFKVRVGDRN--TEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLKTPITFRMNVAPASLPT  111 (228)
T ss_dssp             EEEECGGGTTSCSSCEEEEECSC--TTTCCCCEEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCCCCS
T ss_pred             EEEECceeeeccccccccccccc--ccccCCcceeeeeeccceeeeeecc--ccccceeehhcccccccccccccccccc
Confidence            58999999977543334444432  2233344566778888999999765  6789999999999999999999999998


Q ss_pred             CCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhhh
Q psy3170          82 AHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSKI  161 (525)
Q Consensus        82 ~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~  161 (525)
                      .....+..|.++|||.+..... ..+..++...+.+++...|...+..    ......+|++....   ....|..++  
T Consensus       112 ~~~~~~~~~~~~gwg~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~c~~~~~~---~~~~~~gd~--  181 (228)
T d1fxya_         112 APPATGTKCLISGWGNTASSGA-DYPDELQCLDAPVLSQAKCEASYPG----KITSNMFCVGFLEG---GKDSCQGDS--  181 (228)
T ss_dssp             SCCCTTCEEEEEESSCCCSSSC-CCCSSCEEEEEEBCCHHHHHHHSTT----TCCTTEEEESCTTC---SCBCCTTCT--
T ss_pred             cccccccEEEEEecccccCCCC-CCCchhEEEEEEEeCHHHHhhhcCC----cccceeeEeecCCC---CcccccCcc--
Confidence            8777788999999998765543 3456678889999999999775533    23344555543211   123555443  


Q ss_pred             cccCCcccccccccceeEeecccc
Q psy3170         162 QDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       162 ~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                        ++|+.+...+.|.+++.. .|+
T Consensus       182 --G~Pl~~~~~l~Gi~s~g~-~~~  202 (228)
T d1fxya_         182 --GGPVVCNGQLQGVVSWGD-GCA  202 (228)
T ss_dssp             --TCEEEETTEEEEEEEECS-SSS
T ss_pred             --CccEEEeCEEEEEEEECC-CCC
Confidence              567776666677666643 453

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=147.15  Aligned_cols=123  Identities=21%  Similarity=0.282  Sum_probs=94.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.........++++.... ......+.+.|.++++||+|+..  ...||||||+|.+|+.++++++|+|||.
T Consensus        38 ~VLTaAhCv~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~hp~~~~~--~~~~diAli~L~~~~~~~~~v~~~~l~~  114 (243)
T d2fpza1          38 WVLTAAHCVGPDVKDLAALRVQLREQ-HLYYQDQLLPVSRIIVHPQFYTA--QIGADIALLELEEPVKVSSHVHTVTLPP  114 (243)
T ss_dssp             EEEECHHHHCSBCCCGGGEEEECCCS-BTTTTCCCEEEEEEEECTTCSCT--TTSCCCEEEEESSCCCCCSSSCCCBCCC
T ss_pred             EEEECceeccCCCCcceeEEEEeeec-ccccccEEEeeeeeecccccccc--ccccchhhhcccCccccceeEEEeecCc
Confidence            48999999976543333333332221 22445678999999999999875  6679999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccc
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRY  127 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  127 (525)
                      ...  ..+..+.+.|||.+..++....+..++...+.+++...|...+
T Consensus       115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  162 (243)
T d2fpza1         115 ASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKY  162 (243)
T ss_dssp             TTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHH
T ss_pred             hhhccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHHHhhhhh
Confidence            543  4467799999998877765556677888899999999887654

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=7.2e-16  Score=141.29  Aligned_cols=160  Identities=21%  Similarity=0.293  Sum_probs=113.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..    ...+++|...........+.+.|.++++||+|+..  ...||||||||++|+.+++.++|+|++.
T Consensus        38 ~VLTaAhC~~~----~~~~~~~~~~~~~~~~~~~~~~V~~i~~hp~~~~~--~~~~DiAll~L~~~~~~~~~~~p~~~~~  111 (224)
T d1eufa_          38 FVLTAAHCLGS----SINVTLGAHNIMERERTQQVIPVRRPIPHPDYNDE--TLANDIMLLKLTRKADITDKVSPINLPR  111 (224)
T ss_dssp             EEEECGGGCCE----EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCCSSCCCCCCCC
T ss_pred             EEEeeceeccc----ccceeeeeeeecccCCCcEEEEEEEEEECCccccc--cccccceeeeccceeEEeeeEeeeeeec
Confidence            48999999854    35677887777666667789999999999999875  6689999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+.++|||.+....  .....++...+..++...|...+...    ....+.+.+...   .....|..++
T Consensus       112 ~~~~~~~~~~~~~~g~g~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~~~~---~~~~~c~~ds  182 (224)
T d1eufa_         112 SLAEVKPGMMCSVAGWGRLGVNM--PSTDKLQEVDLEVQSEEKCIARFKNY----IPFTQICAGDPS---KRKNSFSGDS  182 (224)
T ss_dssp             TTCCCCTTCEEEEEESCBSSTTC--CBCSBCEEEEEEBCCTHHHHTTCTTC----CTTTEEEESCTT---SCCBCCTTCT
T ss_pred             ccccccCCceEEEecccceeccc--cccccceeeeeccCCHHHHHHHhccc----cccceeeeeccc---cccccccCCC
Confidence            543  456678999999876554  34556677788888888887755431    122222222110   1124465554


Q ss_pred             hhcccCCcccccccccceeEe
Q psy3170         160 KIQDESPIALAPALVGGVRYV  180 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~  180 (525)
                          ++|+.+...+.|.+++.
T Consensus       183 ----Ggpl~~~~~l~Gi~s~g  199 (224)
T d1eufa_         183 ----GGPLVCNGVAQGIVSYG  199 (224)
T ss_dssp             ----TCEEEETTEEEEEEEEC
T ss_pred             ----CCeEEEcCEEEEEEEEc
Confidence                56776665666665554

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.7e-15  Score=138.80  Aligned_cols=159  Identities=19%  Similarity=0.164  Sum_probs=116.5

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ..+.|++|..++.......+...+.+++.||+|+..  +..||||||+|.+|+.++..++|+|++.
T Consensus        37 ~VLTaAhCv~----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~diall~l~~~~~~~~~~~pi~~~~  110 (224)
T d1nn6a_          37 FVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTS--TLHHDIMLLKLKEKASLTLAVGTLPFPS  110 (224)
T ss_dssp             EEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCCSSCCCCCCCS
T ss_pred             EEEehhhccc----ccceEEecccccccccccccceeEEEEEEeeccccc--ccccchhhhcccCCcccccccccccccc
Confidence            5899999995    357899999988877777889999999999999875  6789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+...||+.+...+  ..+..++...+.+.+...|...+..     .....+|.....   .....|..++
T Consensus       111 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~~~~---~~~~~c~gDs  180 (224)
T d1nn6a_         111 QFNFVPPGRMCRVAGWGRTGVLK--PGSDTLQEVKLRLMDPQACSHFRDF-----DHNLQLCVGNPR---KTKSAFKGDS  180 (224)
T ss_dssp             CCCCCCTTCEEEEEECCCCSSSC--CCCSBCEEEEEEBCCGGGGTTSTTC-----CTTTEEEECCTT---TC--CCCCCT
T ss_pred             cccccCCCceeeeccccccccCC--CccccceEEEEEecCHHHHhhhccc-----ccceeeeccCcc---ccccccCCCc
Confidence            443  456779999999876554  3456778888999999999765432     112222322111   1123566554


Q ss_pred             hhcccCCcccccccccceeEe
Q psy3170         160 KIQDESPIALAPALVGGVRYV  180 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~  180 (525)
                          ++|+.+...++|..++.
T Consensus       181 ----G~PL~~~~~l~GI~s~g  197 (224)
T d1nn6a_         181 ----GGPLLCAGVAQGIVSYG  197 (224)
T ss_dssp             ----TCEEEETTEEEEEEEEC
T ss_pred             ----cceEEECCEEEEEEEEC
Confidence                56776666667766654

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-15  Score=139.58  Aligned_cols=162  Identities=19%  Similarity=0.222  Sum_probs=112.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+.....+.+.++..+.... .......+..++.||+|+..  +..+|||||+|++|+.++++++|+|||.
T Consensus        35 ~VLTaAhC~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~diall~l~~~~~~~~~~~pi~l~~  111 (218)
T d2z7fe1          35 FVMSAAHCVANVNVRAVRVVLGAHNLSRR-EPTRQVFAVQRIFENGYDPV--NLLNDIVILQLNGSATINANVQVAQLPA  111 (218)
T ss_dssp             EEEECHHHHTTSCGGGCEEEESCSBTTSC-CTTCEEEEEEEEEESCCBTT--TTBSCCEEEEESSCCCCSSSCCCCCCCC
T ss_pred             EEEECeEecccccccceeeeeeecccccc-ccceeeeeeeeEeeeccccc--cccceEEEeeccccceeeeeeeeeeecc
Confidence            58999999988666778888887765433 34567778899999999875  6789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  .....+.++|||......  .....++...+.+.+.. |......   ....      +      .....|.+++
T Consensus       112 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~-c~~~~~~---~~~~------~------~~~~~C~gds  173 (218)
T d2z7fe1         112 QGRRLGNGVQCLAMGWGLLGRNR--GIASVLQELNVTVVTSL-CRRSNVC---TLVR------G------RQAGVCFGDS  173 (218)
T ss_dssp             TTCCCCTTCEEEEEESSBCSSSC--CBCSBCEEEEEEEECTT-CCTTSEE---EECT------T------SCCBCCTTCT
T ss_pred             CccccCCCcEEEEeccceeeccc--ccccceeEEEecccccc-cceeeee---eeec------C------cccCcccccc
Confidence            543  345678999999876554  34556777777776644 3222211   1100      0      0112465554


Q ss_pred             hhcccCCcccccccccceeEeeccccCCC
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCDILA  188 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg~~~  188 (525)
                          ++|+.+...+.|..++....|+...
T Consensus       174 ----G~Pl~~~~~l~GI~s~~~~~c~~~~  198 (218)
T d2z7fe1         174 ----GSPLVCNGLIHGIASFVRGGCASGL  198 (218)
T ss_dssp             ----TCEEEETTEEEEEEEEESSSTTCSS
T ss_pred             ----CCCEEECCEEEEEEEEecCCCCCCC
Confidence                5666666667777777666675433

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=141.12  Aligned_cols=170  Identities=23%  Similarity=0.315  Sum_probs=118.5

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.... ...+.+..+...........+.+.|.+++.||+|+..  ...||||||+|++|+.+.++++|||++
T Consensus        38 ~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~~~~~--~~~~diAll~L~~~v~~~~~~~pi~~~  115 (237)
T d1xx9a_          38 WILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMA--ESGYDIALLKLETTVNYTDSQRPICLP  115 (237)
T ss_dssp             EEEECGGGGTTCSCGGGEEEEESCSBGGGCCTTCCCEEEEEEEECTTCSCT--TTSCCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEeCeEeeecccCccceeeecccccccccccceEEEEeeEEEEecccccc--cccceeEEEEeccccccccccceEEec
Confidence            5899999997643 3456777777766666677788999999999999875  678999999999999999999999998


Q ss_pred             CCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchh
Q psy3170          81 RAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQY  158 (525)
Q Consensus        81 ~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~  158 (525)
                      ....  .....+.+.|||......  .....++...+.+.+...|...+...   .....++|++....   ....|..+
T Consensus       116 ~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~~---~~~~~~~c~~~~~~---~~~~c~gd  187 (237)
T d1xx9a_         116 SKGDRNVIYTDCWVTGWGYRKLRD--KIQNTLQKAKIPLVTNEECQKRYRGH---KITHKMICAGYREG---GKDACKGD  187 (237)
T ss_dssp             CTTCTTCCCSCEEEEESCCSSTTC--CCCSBCEEEECCEECHHHHHHHTTTS---CCCTTEEEECCTTC---CCBCCTTC
T ss_pred             ccccccccccccEEEEeecccccc--cCCCccEEEEEEEeCHHHHhhhhcCC---CCCCceEEEecCCC---CcccccCC
Confidence            6543  345679999999876544  34566777788888888887655432   23445666553211   23455554


Q ss_pred             hhhcccCCccccc----ccccceeEeeccccC
Q psy3170         159 SKIQDESPIALAP----ALVGGVRYVRTQCDI  186 (525)
Q Consensus       159 ~~~~~~~~l~~~~----~~~g~v~~~~~~Cg~  186 (525)
                      +    ++|+....    .+.|.+++. ..|+.
T Consensus       188 s----G~pl~~~~~~~~~l~Gi~s~g-~~~~~  214 (237)
T d1xx9a_         188 S----GGPLSCKHNEVWHLVGITSWG-EGCAQ  214 (237)
T ss_dssp             T----TCEEEEEETTEEEEEEEEEEE-SSSSC
T ss_pred             c----cceeEEecCCEEEEEEEEEeC-CCCCC
Confidence            3    44554433    245655554 34543

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.62  E-value=1.8e-15  Score=137.86  Aligned_cols=178  Identities=13%  Similarity=0.113  Sum_probs=97.3

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      .++|+|+||++++|||||||+.+.......+....................... .       ....+|+|||+|+.+..
T Consensus        33 ~~~cTG~lI~~~~vLTAaHcv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~D~all~l~~~~~  104 (216)
T d2o8la1          33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQIT-K-------YSGEGDLAIVKFSPNEQ  104 (216)
T ss_dssp             EEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEE-E-------CSSSSCCEEEEECCCTT
T ss_pred             CEEEEEEEEeCCEEEEeeeeeccCCCceEEEEEEecccccceeeeeeEEeeeee-c-------cccCCceEEEEeccccc
Confidence            578999999999999999999775333333222221011111111111222221 1       12336999999998776


Q ss_pred             cCCCccceec---CCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCC
Q psy3170         359 FSETLKPACL---NRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT  434 (525)
Q Consensus       359 ~~~~v~picL---~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~  434 (525)
                      ......+...   .... ...+....+.||.......     ......-.+...          ....+..     ..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-----~~~~~~~~~~~~----------~~~~l~~-----~~~~  164 (216)
T d2o8la1         105 NKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVA-----TMWESKGKITYL----------KGEAMQY-----DLST  164 (216)
T ss_dssp             SCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSSTT-----CEEEEEEEEEEE----------ETTEEEE-----SCCC
T ss_pred             ccccccceeeeeccccccccCCceeEEEEccCCCcee-----eEEEEeeEEEEc----------cCCeEEE-----ecCc
Confidence            5443333322   2222 2345667788886432211     111111111111          1222221     3468


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcC-Cchhhhccccccccc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTVWPDQF  493 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~-~~~~WI~~~i~~~~~  493 (525)
                      |.|+|||||+-   .  ++.++||.++|..+.    ....+.+. ...+||+++|+..++
T Consensus       165 ~~G~SGgPv~~---~--~g~vVGI~s~g~~~~----~~~~v~~~~~~~~~i~~~i~~~~~  215 (216)
T d2o8la1         165 TGGNSGSPVFN---E--KNEVIGIHWGGVPNE----FNGAVFINENVRNFLKQNIEDINF  215 (216)
T ss_dssp             CTTCTTCEEEC---T--TSCEEEEEEEEETTT----EEEEEECCHHHHHHHHHHCTTCEE
T ss_pred             CCCCCCCcEEC---C--CCEEEEEEeeecCCC----CcceEecCHHHHHHHHHhhhhcCC
Confidence            99999999973   1  456999999884332    23334444 578999999976543

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.4e-16  Score=141.61  Aligned_cols=171  Identities=20%  Similarity=0.240  Sum_probs=98.8

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEE-----------EEECCCCCCCCCCCcCceEEEEeCCCccC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQ-----------NILHPNYTTEGTSQYHDIALLKIAPPVEF   70 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~-----------i~~hp~y~~~~~~~~nDIALl~L~~~v~~   70 (525)
                      .|||||||+.+    ...+++|..++.......+...+..           +..||.|+..  ...||||||+|++|+.+
T Consensus        26 ~VLTaAhCv~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Diall~L~~~v~~   99 (228)
T d1sgfa_          26 WVLTAAHCYND----KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPED--DYSNDLMLLRLSKPADI   99 (228)
T ss_dssp             EEEECGGGCCS----CCEEEECC----C-CTTCEEEEEEEEEECTTSCGGGC----CCTTC--BCTTCCEEEEESSCCCC
T ss_pred             EEEeCHHHccC----CceEEEeeeeeccccccceeeeeeeeccccceeeeeecccCCCCcc--ccccceeEEeecccccc
Confidence            48999999964    3567888776654444333444433           4578888764  67899999999999999


Q ss_pred             CCceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCC
Q psy3170          71 SETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGE  150 (525)
Q Consensus        71 ~~~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~  150 (525)
                      +++++|||||.........+.+.|||.+..... ..+..++...+.+.+...|...+...    ......|++...   .
T Consensus       100 ~~~v~pi~l~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~~~~---~  171 (228)
T d1sgfa_         100 TDVVKPITLPTEEPKLGSTCLASGWGSTTPIKF-KYPDDLQCVNLKLLPNEDCDKAHEMK----VTDAMLCAGEMD---G  171 (228)
T ss_dssp             CSSCCCCCCCCSCCCTTCEEEEC-------C----------CEEEEEECTHHHHTTCSSB----CCTTEEEEEECS---S
T ss_pred             CCceeeEecCccccccCcceEEEeeeeccCCcc-CCCCccEEEEEEEeCHHHhhhhccCC----cccceEEeccCC---C
Confidence            999999999988777788899999998754432 45667888889999999897655431    223334443221   1


Q ss_pred             chhhhchhhhhcccCCcccccccccceeEeeccccCCCCC
Q psy3170         151 FPHQCTQYSKIQDESPIALAPALVGGVRYVRTQCDILAMP  190 (525)
Q Consensus       151 ~~~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~~~~~  190 (525)
                      ....|..+.    ++|+.+...+.|.+++....|+....|
T Consensus       172 ~~~~~~~d~----G~pl~~~~~l~Gv~S~g~~~c~~~~~p  207 (228)
T d1sgfa_         172 GSYTCEHDS----GGPLICDGILQGITSWGPEPCGEPTEP  207 (228)
T ss_dssp             SEEECCCCT----TCEEEETTEEEEEECCCCSSCCCSSCC
T ss_pred             CccccCCCc----CCcEEEeCEEEEEEEECCCCCCCCCCC
Confidence            123344433    456666666677667666667544333

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-15  Score=138.55  Aligned_cols=159  Identities=20%  Similarity=0.202  Sum_probs=119.6

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.    ....|.+|...............|.+++.||+|+..  ...|||||++|..|+.++++++|+|||.
T Consensus        38 ~VLTaAhC~~----~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~~~diaL~~l~~~~~~~~~~~pi~l~~  111 (224)
T d1t32a1          38 FVLTAAHCWG----SNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQR--TIQNDIMLLQLSRRVRRNRNVNPVALPR  111 (224)
T ss_dssp             EEEECGGGCC----SCEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTT--TTBTCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEEeEEccc----ccccceeeeeeeeccccceeeecceeEEEeeccccc--ccccceeEEeeccccccCcccCcccccc
Confidence            4899999984    457899998877766667778899999999999875  6789999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+...|||......   ....++...+.+++...|...+..    .....++|+....   .....|.+++
T Consensus       112 ~~~~~~~~~~~~~~g~g~~~~~~---~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~c~~~~~---~~~~~c~gds  181 (224)
T d1t32a1         112 AQEGLRPGTLCTVAGWGRVSMRR---GTDTLREVQLRVQRDRQCLRIFGS----YDPRRQICVGDRR---ERKAAFKGDS  181 (224)
T ss_dssp             TTCCCCTTCEEEEEESCCSSSSC---CCSBCEEEEEEBCCHHHHHHHSTT----CCTTTEEEECCTT---SSCBCCTTCT
T ss_pred             ccccCCCCCEEEEecccccccCC---CcceeeeeeeeecCHHHHHhhcCc----ccccccceeeccc---ccccccccCc
Confidence            554  445678899999765443   345678888889999899775543    2344555554321   1235677665


Q ss_pred             hhcccCCcccccccccceeEe
Q psy3170         160 KIQDESPIALAPALVGGVRYV  180 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~  180 (525)
                          ++|+.+...++|.+++.
T Consensus       182 ----GgPl~~~~~l~Gi~S~g  198 (224)
T d1t32a1         182 ----GGPLLCNNVAHGIVSYG  198 (224)
T ss_dssp             ----TCEEEETTEEEEEEEEC
T ss_pred             ----CCeEEEcCEEEEEEEEc
Confidence                67777766677766664

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.61  E-value=9.8e-16  Score=140.07  Aligned_cols=163  Identities=18%  Similarity=0.259  Sum_probs=113.8

Q ss_pred             ceeeeccCcccCCCC-CeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGK-PRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~-~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+...... .+.+..+...   .....+...|.++++||+|+..  ...||||||+|++++.++++++|+||+
T Consensus        35 ~VLTaAhCv~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~h~~y~~~--~~~~diAll~L~~~~~~~~~v~pi~l~  109 (222)
T d1eq9a_          35 NVLTAAHCVDGLSNLNRLKVHVGTNY---LSESGDVYDVEDAVVNKNYDDF--LLRNDVALVHLTNPIKFNDLVQPIKLS  109 (222)
T ss_dssp             EEEECHHHHTTCSCGGGEEEEESCSB---TTSCCEEEEEEEEEECTTCBTT--TTBCCCEEEEESSCCCCBTTBCCCEEC
T ss_pred             EEEECceeccccccccceeeecceec---cccCcceeeeeeEEEeeccccc--ccccceehhhccCCccccccccccccc
Confidence            489999999765332 3333333322   2345678899999999999875  678999999999999999999999998


Q ss_pred             CCCC-CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          81 RAHN-VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        81 ~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      .... .....|+++|||.+..++  ..+..++...+...+...|...+..     ....++|++...    ....|..++
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~c~~~~~~-----~~~~~~c~~~~~----~~~~c~~d~  178 (222)
T d1eq9a_         110 TNDEDLESNPCTLTGWGSTRLGG--NTPNALQEIELIVHPQKQCERDQWR-----VIDSHICTLTKR----GEGACHGDS  178 (222)
T ss_dssp             SCCTTCTTSEEEEEECCCSSTTC--CCCSBCEEEEEEEECHHHHHHHSSS-----CCTTEEEECCCT----TCBCCTTCT
T ss_pred             ccccccccceeEEeeeeeecCCC--CCCccceEEEEEEechHHhcccccc-----ccCcceEeccCC----CCCccccCC
Confidence            6543 456679999999877655  4566778888888888888664432     234455554321    123566554


Q ss_pred             hhcccCCcccccccccceeEeecccc
Q psy3170         160 KIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       160 ~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                          ++|+.+...+.|.+++. ..|+
T Consensus       179 ----G~pl~~~~~L~GI~s~~-~~c~  199 (222)
T d1eq9a_         179 ----GGPLVANGAQIGIVSFG-SPCA  199 (222)
T ss_dssp             ----TCEEEETTEEEEEEEEC-STTT
T ss_pred             ----cCCEEEcCEEEEEEEEC-CCCC
Confidence                56776666666766554 4564

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=6.7e-16  Score=142.33  Aligned_cols=136  Identities=16%  Similarity=0.149  Sum_probs=97.0

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCc--CcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSV--TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+.+.  ....+++|.........  ..+.+.|.++++||+|+......++|||||+|++|+.++++++|||+
T Consensus        29 ~VLTaAhCv~~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~diAll~l~~~~~~~~~~~pic~  106 (232)
T d1fona_          29 WVVTAGHCISTS--RTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANL  106 (232)
T ss_dssp             EEEECGGGCCTT--SCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBC
T ss_pred             EEEEChhhccCC--CceEEEEEeccccccccccccccceeEEEEEccCccccccccccceeeeecccceEEeecceeeec
Confidence            589999999764  45677777665433222  23456789999999998764445699999999999999999999999


Q ss_pred             CCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeecc
Q psy3170          80 NRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGG  143 (525)
Q Consensus        80 ~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~  143 (525)
                      +....  ..+..+.+.||+.+..++  ..+..++...+.+++...|......  .......++|.+
T Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~c~~  168 (232)
T d1fona_         107 PPAGDILPNEAPCYISGWGRLYTGG--PLPDKLQQALLPTVDYEHCSQWDWW--GITVKKTMVCAG  168 (232)
T ss_dssp             CCTTCCCCTTCCCEEEECTTCCCSS--SCCSBCEEEECCEECHHHHTSTTTT--GGGCCTTEEEEC
T ss_pred             CcccccCCCCceeEeeccccccCCC--CCCCcceEEEEEEEcHHHhhhhhcc--Cceeeeceeeec
Confidence            86543  446678999999886554  3456777778888877777654322  122334455554

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.8e-16  Score=144.86  Aligned_cols=137  Identities=20%  Similarity=0.201  Sum_probs=98.4

Q ss_pred             ceeeeccCcccCC-----CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC-CCCcCceEEEEeCCCccCCCcee
Q psy3170           2 VNNHAAHCITSPL-----GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-TSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~~-----~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      .|||||||+.+..     ...+.|++|.++.... ...+.+.|.+|++||+|+... ..+.||||||+|++|+.++++++
T Consensus        33 ~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~-~~~~~~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~  111 (240)
T d2qy0b1          33 WILTAAHTLYPKEHEAQSNASLDVFLGHTNVEEL-MKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLL  111 (240)
T ss_dssp             EEEECHHHHSCSSCCC----CCEEEESCSBHHHH-HHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBC
T ss_pred             EEEEChHhCCCcccccccccceeeeeeecccccc-CCcceEEEEEEEeccccccccccccCCCceEEecCCccccccccc
Confidence            4899999997642     2457899998765332 234567899999999998742 24578999999999999999999


Q ss_pred             eeecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccccc-ccccccceeecc
Q psy3170          76 PACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQ-CDILAMPMIIGG  143 (525)
Q Consensus        76 picL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~  143 (525)
                      |||++....  ..+..+++.|||......    +..++...+.+.+...|...+.... .......++|.+
T Consensus       112 pi~l~~~~~~~~~~~~~~~~g~g~~~~~~----~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~  178 (240)
T d2qy0b1         112 PICLPDNDTFYDLGLMGYVSGFGVMEEKI----AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG  178 (240)
T ss_dssp             CCBCCCSGGGGCTTCEEEEEECCCCSSSC----CSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEES
T ss_pred             eEEecccccccccCceeeecccccccccc----cccceEEEEEEcCHHHHHHHhhccccCCceecceEEec
Confidence            999986543  346779999999876432    4556667788888888877553211 122344566654

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.60  E-value=5.6e-15  Score=136.24  Aligned_cols=169  Identities=22%  Similarity=0.202  Sum_probs=119.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC---------CCCCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~nDIALl~L~~~v~~~~   72 (525)
                      .|||||||+.+.    ..+.++...............+.++..|++|...         .....||||||+|++|+.+++
T Consensus        33 ~VLTaAhCv~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~  108 (235)
T d1tona_          33 WVITAAHCYSNN----YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITG  108 (235)
T ss_dssp             EEEECGGGCCSC----CEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCS
T ss_pred             EEEECceecCCC----CceEEeeeeeecCCCceeEeeeeeeeeeeeceeeeeeecccccccccccceeEEEecCccccCC
Confidence            589999999652    3455555544444445556677778888877542         124568999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +++|+||+.........+.++|||.+..... .....++...+...+...|+..+...    ....++|++...+   ..
T Consensus       109 ~i~~i~l~~~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~c~~~~~~---~~  180 (235)
T d1tona_         109 GVKVIDLPTKEPKVGSTCLASGWGSTNPSEM-VVSHDLQCVNIHLLSNEKCIETYKDN----VTDVMLCAGEMEG---GK  180 (235)
T ss_dssp             SCCCCCCCCSCCCTTCEEEEEESSCSSSSSC-CCCSBCEEEEEEEECGGGCGGGGSTT----GGGGEEEEECTTC---SC
T ss_pred             cccccccccccccccceeEEEEccccccccc-cccccceeeeeeeeCHHHHHHHhCCC----CCCCceEeCcCCC---Cc
Confidence            9999999987777788899999998765543 34456788888888999998866542    2344566543221   12


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeeccccC
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCDI  186 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg~  186 (525)
                      ..|..++    ++|+.+...+.|.+++....|+.
T Consensus       181 ~~c~gds----G~Pl~~~~~l~Gi~S~g~~~c~~  210 (235)
T d1tona_         181 DTCAGDS----GGPLICDGVLQGITSGGATPCAK  210 (235)
T ss_dssp             BCCTTCT----TCEEEETTEEEEEECCCCSSCSC
T ss_pred             cccCCCc----CCeEEEcCEEEEEEEeCCCCCCC
Confidence            4576655    67777766677777776667754

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.6e-15  Score=137.46  Aligned_cols=134  Identities=22%  Similarity=0.260  Sum_probs=100.7

Q ss_pred             ceeeeccCcccCC------CCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCce
Q psy3170           2 VNNHAAHCITSPL------GKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~~~------~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v   74 (525)
                      .|||||||+.+..      ...+.+..+..+..... +..+.+.|.++++||+|+..  ...||||||||++|+.+.+.+
T Consensus        36 ~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~--~~~~diAll~L~~~~~~~~~~  113 (241)
T d1eaxa_          36 WLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDF--TFDYDIALLELEKPAEYSSMV  113 (241)
T ss_dssp             EEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTB
T ss_pred             EEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCcEEEEEEEEEECCccccc--ccCCcccccccCCceecCccc
Confidence            4899999997642      13456777766554443 45678999999999999875  678999999999999999999


Q ss_pred             eeeecCCCCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeecc
Q psy3170          75 KPACLNRAHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGG  143 (525)
Q Consensus        75 ~picL~~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~  143 (525)
                      +|||||....  ..+..+...|||......  .....++...+.+.+...|...+..    .....++|.+
T Consensus       114 ~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~----~~~~~~~c~~  178 (241)
T d1eaxa_         114 RPICLPDASHVFPAGKAIWVTGWGHTQYGG--TGALILQKGEIRVINQTTCENLLPQ----QITPRMMCVG  178 (241)
T ss_dssp             CCCBCCCTTCCCCTTCEEEEEESSBSSTTS--CBCSBCEEEEEEECCHHHHHHHSTT----TCCTTEEEEE
T ss_pred             ceeeccccccccccceeEEEeccCCccccc--cccccceEEEEEEeCHHHHHHHhCc----cccCccceec
Confidence            9999986443  445678899999776544  3456788899999999999876644    2334456654

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=6.5e-15  Score=136.20  Aligned_cols=122  Identities=22%  Similarity=0.309  Sum_probs=97.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ....+.++.......+...+.+.|.++++||+|+......++|||||+|+.++.++..++|+|++.
T Consensus        39 ~VLTaAhCv~~~--~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~  116 (241)
T d1brup_          39 WVLTAAHCISSS--RTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPA  116 (241)
T ss_dssp             EEEECGGGCCTT--SCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCC
T ss_pred             EEEECeEeeecc--cccceeeeccceeccCCCccccceeeeEEEeeeeeccccCCceEEEEecccccccccceeeeeecc
Confidence            589999999764  456677776666555667788999999999999876555678899999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccc
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRY  127 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  127 (525)
                      ...  ..+..+.+.|||......  ..+..++...+..++...|....
T Consensus       117 ~~~~~~~~~~~~~~g~g~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~  162 (241)
T d1brup_         117 AGTILPNNYVCYVTGWGRLQTNG--ASPDILQQGQLLVVDYATCSKPG  162 (241)
T ss_dssp             TTCCCCTTCEEEEEESCCSSTTS--CCCSBCEEEEEEEECHHHHTSTT
T ss_pred             ccccCCCceeEEEEeeeccCCCC--cCCCcceEEEEEEeCHHHhCccc
Confidence            543  457789999999876544  34567888889999988887653

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=99.59  E-value=3.6e-15  Score=136.52  Aligned_cols=166  Identities=18%  Similarity=0.272  Sum_probs=113.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.........+..+....   ....+...+..++.||+|..    ..||||||+|++|+.+++.++|+|++.
T Consensus        35 ~VLTaAhC~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~h~~~~~----~~~DiAll~L~~~v~~~~~~~~i~~~~  107 (224)
T d1gdna_          35 TVLTAAHCVSGYAQSGFQIRAGSLSR---TSGGITSSLSSVRVHPSYSG----NNNDLAILKLSTSIPSGGNIGYARLAA  107 (224)
T ss_dssp             EEEECHHHHTTSCGGGEEEEESCSBS---SSSSEEEEEEEEEECTTCBT----TBSCCEEEEESSCCCCBTTBCCCCBCC
T ss_pred             EEEECcccceeccccccceeeccccc---cCCcceEEEEEEEeeecccc----ccceeEEEeeccccccccccceeeccc
Confidence            58999999977655666777765443   34456778899999999864    368999999999999999999999985


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..|.++|||.+..... ..+..++...+.+++...|...+...   .....+.|.+...   .....|..++
T Consensus       108 ~~~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~v~~i~~~~C~~~~~~~---~~~~~~~~~~~~~---~~~~~c~~ds  180 (224)
T d1gdna_         108 SGSDPVAGSSATVAGWGATSEGGS-STPVNLLKVTVPIVSRATCRAQYGTS---AITNQMFCAGVSS---GGKDSCQGDS  180 (224)
T ss_dssp             TTCCCCTTCEEEEEESCCSSTTCS-CCCSBCEEEEEEEECHHHHHHHHCTT---TSCTTEEEECCTT---CCCBCCTTCT
T ss_pred             cccccccceeeeeeccCccccCCC-cCCCEeeeeEEEEeCHHHHhcccccC---ccccceeeeecCC---CCcccccccc
Confidence            543  4577899999998765442 34567788899999999897755431   2233444433221   1123466554


Q ss_pred             hhcccCCccc-ccccccceeEeeccccC
Q psy3170         160 KIQDESPIAL-APALVGGVRYVRTQCDI  186 (525)
Q Consensus       160 ~~~~~~~l~~-~~~~~g~v~~~~~~Cg~  186 (525)
                          ++|+.. ...++|..++. ..|+.
T Consensus       181 ----G~pl~~~~~~l~GI~S~g-~~c~~  203 (224)
T d1gdna_         181 ----GGPIVDSSNTLIGAVSWG-NGCAR  203 (224)
T ss_dssp             ----TCEEECTTCCEEEEEEEC-SSSSC
T ss_pred             ----CCceEecCCEEEEEEEeC-CCCCC
Confidence                456543 22456655554 34653

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.59  E-value=4.9e-15  Score=136.59  Aligned_cols=171  Identities=18%  Similarity=0.204  Sum_probs=110.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcce-EEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~-~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+.    ..+.++...........+. ......+.||.|+..  ...||||||||++|+.++++|+|+|||
T Consensus        35 ~VLTaAhCv~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DiaLl~L~~~v~~~~~i~picl~  108 (234)
T d1op0a_          35 WVVTAAHCDSTD----FQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNE--VLDKDIMLIKLDKPISNSKHIAPLSLP  108 (234)
T ss_dssp             EEEECGGGCCSS----CEEEESCSCSSSCCTTCEEECEEEEEECTTCCTTC--TTSSCCEEEEESSCCCCBTTBCCCCCC
T ss_pred             EEEECceeCCCC----CccccceeeccccCCcceeeeeeeecccccccccc--ccchhhhhhhcCCceeccceeeccccc
Confidence            489999999653    2233333333322333333 334567778888765  678999999999999999999999999


Q ss_pred             CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhhh
Q psy3170          81 RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYSK  160 (525)
Q Consensus        81 ~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~  160 (525)
                      ......+..+.++|||....... .....++...+.+++...|...+....   ....++|.....   .....|.+++ 
T Consensus       109 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~---~~~~~~~~~~~~---~~~~~~~g~~-  180 (234)
T d1op0a_         109 SSPPSVGSVCRIMGWGSITPVKE-TFPDVPYCANINLLDHAVCQAGYPELL---AEYRTLCAGIVQ---GGKDTCGGDS-  180 (234)
T ss_dssp             SSCCCTTCEEEEEESSCSSSSSC-CCCSSCEEEEEEEECHHHHHHHCTTCC---TTSCEEEEECTT---CCCBCCTTCT-
T ss_pred             ccCcccceEEEEeeecccccccc-ccccccccccceEechHHhcccccCcc---eeeeeeeecccc---cccccccCCC-
Confidence            87777788999999997765442 445667778888888888866543321   111222222111   1223444443 


Q ss_pred             hcccCCcccccccccceeEeeccccCCCC
Q psy3170         161 IQDESPIALAPALVGGVRYVRTQCDILAM  189 (525)
Q Consensus       161 ~~~~~~l~~~~~~~g~v~~~~~~Cg~~~~  189 (525)
                         ++|+.....+.|.+++....|+....
T Consensus       181 ---G~Pl~~~~~l~Gi~S~g~~~c~~~~~  206 (234)
T d1op0a_         181 ---GGPLICNGQFQGIVSYGAHPCGQGPK  206 (234)
T ss_dssp             ---TCEEEETTEEEEEEEECCSSTTCTTS
T ss_pred             ---CceEEEcCEEEEEEEEcCCCCCCCCC
Confidence               46666656667777776677764433

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.58  E-value=1.3e-15  Score=141.47  Aligned_cols=178  Identities=17%  Similarity=0.160  Sum_probs=103.8

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccc----cccceEEEEEEEeCCCCCCCCCCcccceEEEEEC
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYS----VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~----~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~  354 (525)
                      ...|+|+||++++|||||||+.........+.++........    .......+..+..+|..      ..+|||||+|+
T Consensus        54 ~~~gTG~lI~~~~ILTa~Hvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~D~All~l~  127 (242)
T d1agja_          54 QTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFG------AGVDLALIRLK  127 (242)
T ss_dssp             TEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTC------TTSCCEEEEEC
T ss_pred             CccEEEEEEeCCEEEEcccEeccCCCceEEEEEeecceecccceeeeccceEEEEEEeeecCC------CcCcEEEEEec
Confidence            467999999999999999999765444444554433111111    11122335555555432      23699999998


Q ss_pred             CCcc---cCCCccceecCCCCC-CCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCC
Q psy3170         355 PPVE---FSETLKPACLNRAHN-VKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAG  430 (525)
Q Consensus       355 ~~~~---~~~~v~picL~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~  430 (525)
                      .+..   +.+.+.|+.|..... ..+..++++||....     ....+......+...           ...++.     
T Consensus       128 ~~~~~~~~~~~~~~~~l~~s~~~~~G~~v~~~GyP~~~-----~~~~~~~~~~~~~~~-----------~~~~~~-----  186 (242)
T d1agja_         128 PDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDH-----KVNQMHRSEIELTTL-----------SRGLRY-----  186 (242)
T ss_dssp             CCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTT-----STTCCEEEEEEECCG-----------GGSEEE-----
T ss_pred             cccccccccccCcceeecccccccCCcEEEEEEcCCCC-----ccceeEecccccccc-----------cccEEE-----
Confidence            7643   234678888876543 567889999996422     112222222222211           112322     


Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccccc
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP  490 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i~~  490 (525)
                      ..+++.|+|||||+-   .  .+.|+||.+++..+.......-|.  .+..+||++.+..
T Consensus       187 ~~~~~~G~SGgPl~~---~--~g~vVGI~~~~~~~~~~~~~~~~a--v~i~~~i~~~i~~  239 (242)
T d1agja_         187 YGFTVPGNSGSGIFN---S--NGELVGIHSSKVSHLDREHQINYG--VGIGNYVKRIINE  239 (242)
T ss_dssp             ECCCCGGGTTCEEEC---T--TSEEEEEEEEEEECSSTTCEEEEE--EECCHHHHHHHHH
T ss_pred             ecccCCccCCCcEEC---C--CCeEEEEEeEeecCCCCccceEEE--EeCHHHHHHHHHH
Confidence            125789999999973   1  467999999885443222222232  1244777776643

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.58  E-value=3.1e-15  Score=138.45  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=101.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.......+.+.+|..+... ....+.+.|+++++||+|+.....+.||||||+|++++.+++.++|+|++.
T Consensus        38 ~VLTaAhCv~~~~~~~~~v~~~~~~~~~-~~~~~~~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~  116 (241)
T d1m9ua_          38 SALSASHCVDGVLPNNIRVIAGLWQQSD-TSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPA  116 (241)
T ss_dssp             EEEECHHHHTTCCGGGEEEEESCSBTTC-CTTCEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCS
T ss_pred             EEEEChhhcccccCceeeEEEEeeeccc-ccccccccceeeeeeeeeccccccccccceeeeccceeeeeeceeeeeeec
Confidence            5899999997766677889999776543 345678999999999999876445689999999999999999999999985


Q ss_pred             CC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccc
Q psy3170          82 AH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVK  129 (525)
Q Consensus        82 ~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  129 (525)
                      ..  ...+..+.+.|||.+....  ..+..++...+.+.+...|...+..
T Consensus       117 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~  164 (241)
T d1m9ua_         117 NNNNDYAGTTCVISGWGRTDGTN--NLPDILQKSSIPVITTAQCTAAMVG  164 (241)
T ss_dssp             CSSCCCTTCEEEEEESSCSSSSS--CCCSBCEEEEEEBCCHHHHHHHHTT
T ss_pred             cccccccceEEEEeecccccCCC--CCCCcceEEEEEeechhHhhhhhhc
Confidence            44  3456778999999876554  4567888899999999999776543

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-15  Score=138.21  Aligned_cols=156  Identities=20%  Similarity=0.241  Sum_probs=104.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCC----CCCCCcCceEEEEeCCCccCCCceeee
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT----EGTSQYHDIALLKIAPPVEFSETLKPA   77 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~----~~~~~~nDIALl~L~~~v~~~~~v~pi   77 (525)
                      .|||||||+.+.......+..+...........+...+.+++.||.|..    ......||||||||++|+.++++++|+
T Consensus        35 ~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~  114 (255)
T d1z8ga1          35 WVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPV  114 (255)
T ss_dssp             EEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCC
T ss_pred             EEEECceecCCCCCccceeeEeeeeecccCCccEEEEEEEEEEEeeeccccccccCCccccEEEEecCCccccCcccccc
Confidence            4899999997754333333333333333444567788999999998432    112567999999999999999999999


Q ss_pred             ecCCCC--CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhh
Q psy3170          78 CLNRAH--NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQC  155 (525)
Q Consensus        78 cL~~~~--~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C  155 (525)
                      ||+...  ...+..|.+.||+.+...+  ..+..++...+.+.+...|...+...  ......+.|++...+   ....|
T Consensus       115 ~l~~~~~~~~~~~~~~~~G~~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~---~~~~c  187 (255)
T d1z8ga1         115 CLPAAGQALVDGKICTVTGWGNTQYYG--QQAGVLQEARVPIISNDVCNGADFYG--NQIKPKMFCAGYPEG---GIDAC  187 (255)
T ss_dssp             BCCCTTCCCCTTCEEEEEESSBSSTTS--CBCSBCEEEEEEEECHHHHTSTTTTT--TCCCTTEEEESCTTC---SCBCC
T ss_pred             eecccCcccCCCcEEEeeccccccCCC--cccceeEEEEEEEeCHHHhhhhhccC--ccccCcceEEecCCC---Ccccc
Confidence            998643  3557789999999876555  34567888889999988887654331  123344554443221   12346


Q ss_pred             chhhhhcccCCcc
Q psy3170         156 TQYSKIQDESPIA  168 (525)
Q Consensus       156 ~~~~~~~~~~~l~  168 (525)
                      ..++    ++|+.
T Consensus       188 ~gds----GgPl~  196 (255)
T d1z8ga1         188 QGDS----GGPFV  196 (255)
T ss_dssp             TTCT----TCEEE
T ss_pred             cCcc----ccceE
Confidence            6554    45554

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.57  E-value=5.6e-15  Score=136.37  Aligned_cols=168  Identities=18%  Similarity=0.248  Sum_probs=116.4

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCC---------CCCCcCceEEEEeCCCccCCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQYHDIALLKIAPPVEFSE   72 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~nDIALl~L~~~v~~~~   72 (525)
                      +|||||||+.+.    ...+.............+...+...+.|+.|...         ...+.||||||||++|+.+++
T Consensus        35 ~VLTaAhCv~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~  110 (237)
T d1gvza_          35 WVLTAAHCMSDD----YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITD  110 (237)
T ss_dssp             EEEECGGGCCSS----CEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBT
T ss_pred             EEEeChhhccCC----CceeEeeeeeccccCcceeeeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCceeccc
Confidence            589999999653    2334444444444555677888999999887642         123468999999999999999


Q ss_pred             ceeeeecCCCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCch
Q psy3170          73 TLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFP  152 (525)
Q Consensus        73 ~v~picL~~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  152 (525)
                      +++|+|||......+..+++.|||.+..... ..+..++...+.+.+...|...+...    .....+|+....   ...
T Consensus       111 ~v~p~~l~~~~~~~~~~~~~~g~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~~~~---~~~  182 (237)
T d1gvza_         111 AVKILDLPTQEPKLGSTCYTSGWGLISTFTN-RGSGTLQCVELRLQSNEKCARAYPEK----MTEFVLCATHRD---DSG  182 (237)
T ss_dssp             TBCCCCCCSSCCCTTCEEEEEEEECSCTTTC-SEEEEEEEEEEEEECGGGGCSSCGGG----CCTTEEEEECSS---TTC
T ss_pred             ccccccccccccccceeEEEEeeeeeccccc-cccceeeEEEEEeecHHHHHhhcccc----cccccccceecc---ccc
Confidence            9999999988777788899999998765442 35677889999999999998765442    223333333211   123


Q ss_pred             hhhchhhhhcccCCcccccccccceeEeecccc
Q psy3170         153 HQCTQYSKIQDESPIALAPALVGGVRYVRTQCD  185 (525)
Q Consensus       153 ~~C~~~~~~~~~~~l~~~~~~~g~v~~~~~~Cg  185 (525)
                      ..|.+++    ++|+.+...+.|.+++....|+
T Consensus       183 ~~~~gds----G~pl~~~~~l~Gv~s~g~~~c~  211 (237)
T d1gvza_         183 SICLGDS----GGALICDGVFQGITSWGYSECA  211 (237)
T ss_dssp             EECGGGT----TCEEEETTEEEEEECCCSSSCE
T ss_pred             ccccCCC----CCcEEEcCEEEEEEEeccCCCC
Confidence            4555554    5677666566666666555664

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.7e-16  Score=146.09  Aligned_cols=166  Identities=20%  Similarity=0.274  Sum_probs=101.2

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCC-------CCCcCceEEEEeCCCccCCCc
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG-------TSQYHDIALLKIAPPVEFSET   73 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~nDIALl~L~~~v~~~~~   73 (525)
                      .|||||||+... ....+.|++|...        +...|+++++||+|+...       ..+.||||||||++|++|+++
T Consensus        43 ~VLTAAhCv~~~~~~~~~~v~~g~~~--------~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~  114 (287)
T d1rrka1          43 FVLTAAHCFTVDDKEHSIKVSVGGEK--------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQT  114 (287)
T ss_dssp             EEEECGGGCCTTCCGGGEEEEETTCS--------SCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTT
T ss_pred             EEEEChhheecCCCcceEEEEeCCee--------ceeeeEEEEecCCccccccccccCCCcccccEEEEecccCccccce
Confidence            589999999653 2356888888432        457899999999997431       245689999999999999999


Q ss_pred             eeeeecCCCCC-------CCCCCEEEEeccccccCCc-----ccccccceeeeeeecCcccc---cccc--------ccc
Q psy3170          74 LKPACLNRAHN-------VKSPTAIASGFGKLNYFEC-----TQYSKIQDESPIALAPALVG---GVRY--------VKT  130 (525)
Q Consensus        74 v~picL~~~~~-------~~~~~~~v~GWG~~~~~~~-----~~~~~~~~~~~~~~~~~~~c---~~~~--------~~~  130 (525)
                      |+|||||....       .....+...+|+.......     ......+....+.+.+...|   ....        ...
T Consensus       115 v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (287)
T d1rrka1         115 IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKD  194 (287)
T ss_dssp             BCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSC
T ss_pred             EEEEecCCccccccccccCCcceEeecCceeecCCCccccccccCCceeEEEEEEEeccchhhhhhhhhhcccccccccc
Confidence            99999985421       2233344445544322111     11233444445554443322   1111        112


Q ss_pred             cccccccceeeccCCcccCCchhhhchhhhhcccCCcccccc----cccceeEe
Q psy3170         131 QCDILAMPMIIGGSRAKYGEFPHQCTQYSKIQDESPIALAPA----LVGGVRYV  180 (525)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~l~~~~~----~~g~v~~~  180 (525)
                      ....+...|+|+|...+. .....|.+++    ++|+.+...    +.|.+++.
T Consensus       195 ~~~~i~~~~~Cag~~~~~-~~~~~C~GDS----GgPL~~~~~~~~~lvGI~S~G  243 (287)
T d1rrka1         195 ISEVVTPRFLCTGGVSPY-ADPNTCRGDS----GGPLIVHKRSRFIQVGVISWG  243 (287)
T ss_dssp             GGGTSCTTEEEEESSSSS-CCCCCCGGGT----TCEEEEEETTEEEEEEEEEEE
T ss_pred             ccccccCCceEecccCCC-cCCCCCCCCc----cCCeEEecCCeEEEEEEEEec
Confidence            223455678998754322 2345688887    777765543    56766664

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=7.5e-15  Score=136.86  Aligned_cols=164  Identities=20%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+..... ...+..............+...|.++++||+|...  ...|||||++|.+|+.+++.++||||+.
T Consensus        52 ~VLTaAhC~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~i~~h~~y~~~--~~~~diali~l~~pi~~~~~~~pi~l~~  128 (251)
T d1pytd_          52 HVLTAAHCISNTLT-YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSF--LVRNDIALIKLAETVELGDTIQVACLPS  128 (251)
T ss_dssp             EEEECGGGCCTTCC-EEEEESCSBTTCSCCSSCEEEEEEEEEECTTCBTT--TTBSCCEEEEESSCCCCCSSCCCCBCCC
T ss_pred             eEEEeeeccccccc-ceeeeeeeeeecccCCCceEEeEEEEEEeeeeccc--ccCCceeeeecCCCcccCceeEEEEeec
Confidence            48999999976432 22222222222223345678899999999999875  6789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  ..+..+.++||+.+..++.  ....+....+..++...|...+...  ......++|++...    ....|..++
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~~~~~--~~~~~~~~c~~~~~----~~~~c~gd~  200 (251)
T d1pytd_         129 EGSLLPQDYPCFVTGWGRLYTNGP--IAAELQQGLQPVVDYATCSQRDWWG--TTVKETMVCAGGDG----VISACNGDS  200 (251)
T ss_dssp             TTCCCCTTCEEEECBCCCSSCCSC--CCSBCBCCEEECBCHHHHTSTTTTT--TTCCTTEEEECCSC----SSCCCCSCT
T ss_pred             cccCCCCceeEEEecCccccCCCc--ccceeceeeccccCHHHHhhhhccc--ccccCceEEeccCC----CCccccCCC
Confidence            654  4566799999998876543  3344555566677777776544321  12334456654321    123465554


Q ss_pred             hhcccCCccccc----ccccceeEe
Q psy3170         160 KIQDESPIALAP----ALVGGVRYV  180 (525)
Q Consensus       160 ~~~~~~~l~~~~----~~~g~v~~~  180 (525)
                          ++|+.+..    .++|..++.
T Consensus       201 ----G~Pl~~~~~~~~~L~Gi~S~~  221 (251)
T d1pytd_         201 ----GGPLNCQADGQWDVRGIVSFG  221 (251)
T ss_dssp             ----TCEEEEESSSSEEEEEEEEEC
T ss_pred             ----CCceEEeeCCEEEEEEEEEEC
Confidence                45554433    245554443

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.7e-15  Score=134.94  Aligned_cols=121  Identities=25%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+....  ...+..............+.+.+.++++||+|+..  ...+|||||+|++|+.++++++|+|||.
T Consensus        36 ~VLTaAhCv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~~--~~~~diAll~L~~pv~~~~~v~pi~l~~  111 (233)
T d2p3ub1          36 YILTAAHCLYQAK--RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLKTPITFRMNVAPACLPE  111 (233)
T ss_dssp             EEEECGGGGGSCS--SCEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTT--TCTTCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEECceeccccc--ccccccccccccccCCCceeecceeEEEeeccccc--ccccceeeeecccceeecccccccccCC
Confidence            5899999997643  34444443333334456678899999999999875  6789999999999999999999999986


Q ss_pred             CC-----CCCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccc
Q psy3170          82 AH-----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYV  128 (525)
Q Consensus        82 ~~-----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  128 (525)
                      ..     ......+++.|||.....+  .....++...+.+.+...|...+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~  161 (233)
T d2p3ub1         112 RDWAESTLMTQKTGIVSGFGRTHEKG--RQSTRLKMLEVPYVDRNSCKLSSS  161 (233)
T ss_dssp             HHHHHHHTTTSSEEEEEESCBSSTTS--CBCSBCEEEEEEBCCHHHHHHHCS
T ss_pred             cccccccccccceEEEecCCccccCC--CccccccccccccccchhhhcccC
Confidence            42     2445668899999876544  345566777778888877866554

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=132.60  Aligned_cols=130  Identities=15%  Similarity=0.152  Sum_probs=88.3

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCC--cCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYS--VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~--~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      .|||||||+.+.....+.|++|..+.....  ...+.+.+..+..||+|        ||||||||++|+.++++|+||||
T Consensus        34 ~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~DIAll~L~~~v~~~~~v~picl  105 (234)
T d1si5h_          34 WVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG--------SDLVLMKLARPAVLDDFVSTIDL  105 (234)
T ss_dssp             EEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSST--------TCEEEEEESSCCCCSSSCCCCBC
T ss_pred             EEEECcCccCCCCCccceEEEEeecccccccceeEEEEeeccccCCCcc--------cceEEEeeccCcccccccccccc
Confidence            589999999877667889999987664433  23345566666666654        69999999999999999999999


Q ss_pred             CCCCCC--CCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccC
Q psy3170          80 NRAHNV--KSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGS  144 (525)
Q Consensus        80 ~~~~~~--~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  144 (525)
                      |.....  ....+.+.|||.....   ..+..++...+.+.+...|...+....  .....++|.+.
T Consensus       106 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~C~~~  167 (234)
T d1si5h_         106 PNYGSTIPEKTSCSVYGWGYTGLI---NYDGLLRVAHLYIMGNEKCSQHHRGKV--TLNESEICAGA  167 (234)
T ss_dssp             CCTTCCCCTTCEEEEEESSCCCCS---SCCCBCEEEEEEEECGGGTCC---------CCTTEEEEEC
T ss_pred             ccccccCCcceeEEEecccccccc---cccceeEEEEeeccchhHhhhhhcccc--ccCCccEEEcc
Confidence            865543  3455777788765433   245567777888887777766543221  23445666543

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=135.88  Aligned_cols=99  Identities=25%  Similarity=0.327  Sum_probs=81.0

Q ss_pred             ceeeeccCcccCC-CCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPL-GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+.. ...+.+.++...+...........+..++.||.|...  ...||||||||++|+.++++|+|+|||
T Consensus        35 ~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DiAll~L~~~v~~~~~i~picl~  112 (254)
T d2bz6h1          35 WVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPG--TTNHDIALLRLHQPVVLTDHVVPLCLP  112 (254)
T ss_dssp             EEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEETTCCTT--SCSSCCEEEEESSCCCCBTTBCCCBCC
T ss_pred             EEEECcccccCCCCcccceeeccceeeccccccceeeeeeeeeeccccccc--ccccceeEEEecCcccccceEeeeecC
Confidence            5899999997753 3557788888877766667778889999999999875  678999999999999999999999998


Q ss_pred             CCC-----CCCCCCEEEEeccccccCC
Q psy3170          81 RAH-----NVKSPTAIASGFGKLNYFE  102 (525)
Q Consensus        81 ~~~-----~~~~~~~~v~GWG~~~~~~  102 (525)
                      ...     ......+++.|||.+....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (254)
T d2bz6h1         113 ERTFSERTLAFVRFSLVSGWGQLLDRG  139 (254)
T ss_dssp             CHHHHHHTGGGCCEEEEEESCBSSTTS
T ss_pred             ccccccccccCCceEEEeccCccCCCC
Confidence            532     2346678999999986554

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-14  Score=133.59  Aligned_cols=123  Identities=21%  Similarity=0.248  Sum_probs=92.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+....  ...+..................+.++++||+|+.......||||||||++|+.++..++|+|||.
T Consensus        35 ~VLTaAhCv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~  112 (235)
T d1rfna_          35 WIVTAAHCVETGV--KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIAD  112 (235)
T ss_dssp             EEEECGGGCCTTC--CCEEEESCSBSSSCCSCCEEEEEEEEEECTTCBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCC
T ss_pred             EEEEChhhcCCCC--ceEEEEeecccccCCCCcceeeeeEEeeccCCCCCcCccCceEEEEEeCCCccCCCccceeeecc
Confidence            4899999997643  33444444444444455667889999999999875445678999999999999999999999986


Q ss_pred             CCC----CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccc
Q psy3170          82 AHN----VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYV  128 (525)
Q Consensus        82 ~~~----~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  128 (525)
                      ...    ..+..+.+.|||......  .....++...+.+.+...|...+.
T Consensus       113 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~c~~~~~  161 (235)
T d1rfna_         113 KEYTNIFLKFGSGYVSGWGRVFHKG--RSALVLQYLRVPLVDRATCLRSTK  161 (235)
T ss_dssp             HHHHHHHHTTSEEEEEESCBSSTTS--CBCSBCEEEEEEBCCHHHHHHHCS
T ss_pred             ccccccccccceEEEeccccccccc--cccCcceEEEEecccccccccccC
Confidence            432    346678999999876554  345677888999999988876554

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.1e-15  Score=138.18  Aligned_cols=121  Identities=18%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCC-cCcceEEEEEEEECCCCCCC-----CCCCcCceEEEEeCCCccCCCcee
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYS-VTDNIHRVMQNILHPNYTTE-----GTSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i~~hp~y~~~-----~~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      .|||||||+.+.  ....+++|..++.... ...+.+.|.++++||+|...     ..++.||||||||++|+.++++|+
T Consensus        45 ~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~  122 (259)
T d1elva1          45 WVLTAAHVVEGN--REPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVS  122 (259)
T ss_dssp             EEEECHHHHTTC--SSCCEECSCSBCC-------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBC
T ss_pred             EEEecccccccc--cceeEEeeeeeeecccccccccccceeEeecceeecccccccCCCcccceeeeecccceehhcccC
Confidence            589999999764  4456778877654333 34567889999999999642     124678999999999999999999


Q ss_pred             eeecCCCC----CCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccc
Q psy3170          76 PACLNRAH----NVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRY  127 (525)
Q Consensus        76 picL~~~~----~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  127 (525)
                      |+|++...    ...+..+++.|||.+....   ....++...+.+.+...|...+
T Consensus       123 pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  175 (259)
T d1elva1         123 PICLPGTSSDYNLMDGDLGLISGWGRTEKRD---RAVRLKAARLPVAPLRKCKEVK  175 (259)
T ss_dssp             CCBCCCSSGGGCCCTTCEEEEEESCCCSSCS---SCSBCEEEEEEEECHHHHHTC-
T ss_pred             ceeeccCccccccccceEEEEeccccccccc---cccccccceeeEechhhceeee
Confidence            99998543    2456779999999876543   2334556667776666665443

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.53  E-value=9.7e-15  Score=134.18  Aligned_cols=114  Identities=20%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ..+.+++|..+.   ...++.+.|+++++||+|+..  ...||||||+|+++ .++++|+|+||+.
T Consensus        39 ~VLTaAhC~~~~--~~~~v~~~~~~~---~~~~~~~~v~~i~~hp~y~~~--~~~~DiALl~L~~~-~~~~~v~pi~l~~  110 (230)
T d2hlca_          39 WILTAAHCVHDA--VSVVVYLGSAVQ---YEGEAVVNSERIISHSMFNPD--TYLNDVALIKIPHV-EYTDNIQPIRLPS  110 (230)
T ss_dssp             EEEECHHHHTTE--EEEEEEESCSBT---TCCSEEEECSEEEECTTCBTT--TTBTCCEEEECSCC-CCCSSCCCCBCCC
T ss_pred             EEEEeeeccccc--ccceeeccccee---cccccceeeEeEEeeeccccc--ccccceeEEEeecc-cccccceeEEeec
Confidence            489999999653  456778886554   345678999999999999875  67899999999876 6788999999985


Q ss_pred             CCC----CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccc
Q psy3170          82 AHN----VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYV  128 (525)
Q Consensus        82 ~~~----~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  128 (525)
                      ...    ..+..+++.|||....     ....++...+...+...|...+.
T Consensus       111 ~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~c~~~~~  156 (230)
T d2hlca_         111 GEELNNKFENIWATVSGWGQSNT-----DTVILQYTYNLVIDNDRCAQEYP  156 (230)
T ss_dssp             GGGGGCCCTTCEEEEEESSCCSS-----CCCBCEEEEEEEECHHHHHTTSC
T ss_pred             cccccccccceeEEEEeeccccc-----cchhhheeeeccccchhhhhccc
Confidence            432    3456688999997542     23456667777777777765443

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.52  E-value=3.7e-14  Score=130.61  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+...  ....+.+|...............+..+.+||.|+.......+|||||+|++|+.+++.++|||||.
T Consensus        39 ~VLTaAhCv~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~  116 (236)
T d1elta_          39 WVMTAAHCVDSA--RTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPP  116 (236)
T ss_dssp             EEEECHHHHSSC--CCEEEEESCSBTTSCCSCCEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCC
T ss_pred             EEEECeeecccc--ccceeeccceeeecccCCceeeeeeEEEEeeeecccccccCceEEEeeccCcceeecccceeecCc
Confidence            589999999763  456788887766555666677888899999999876444568999999999999999999999996


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccc
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVR  126 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  126 (525)
                      ...  .....+.+.|||......  .....++...+.+.+...|...
T Consensus       117 ~~~~~~~~~~~~~~g~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  161 (236)
T d1elta_         117 SNQILPNNNPCYITGWGKTSTGG--PLSDSLKQAWLPSVDHATCSSS  161 (236)
T ss_dssp             TTCCCCTTCCEEEEESCCSSTTC--CCCSBCEEEECCEECHHHHTST
T ss_pred             hhcccCCCceEEEecccccccCc--ccCccceeeeeEEEcHHHhhhh
Confidence            544  446679999999876544  2344556666767666666554

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.51  E-value=9.4e-15  Score=129.61  Aligned_cols=169  Identities=15%  Similarity=0.097  Sum_probs=93.6

Q ss_pred             eeEeE-EEEE---eCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEEC
Q psy3170         279 KWFCG-GSLI---SPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA  354 (525)
Q Consensus       279 ~~~C~-GtLI---s~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~  354 (525)
                      .+.|+ |.++   +.+||||||||+...  .  .+.        .........+.....+|.         +|+|+++++
T Consensus        11 ~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~--~--~~~--------~~~~~~~~~~~~~~~~~~---------~D~a~~~~~   69 (187)
T d1hpga_          11 GSRCSAAFNVTKGGARYFVTAGHCTNIS--A--NWS--------ASSGGSVVGVREGTSFPT---------NDYGIVRYT   69 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC--S--EEE--------SSTTCCEEEEEEEEECSB---------SCEEEEEEC
T ss_pred             CCeEeeeEEEEcCCCcEEEEchhcCCCC--C--eeE--------ECCCCEEEEEEEeecccC---------Cchhheecc
Confidence            47798 7888   456999999998652  1  111        112223333555555553         599999998


Q ss_pred             CCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCC
Q psy3170         355 PPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT  434 (525)
Q Consensus       355 ~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~  434 (525)
                      .+......+.+   .     ........||................. ....  ..+............|......+...
T Consensus        70 ~~~~~~~~~~~---~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (187)
T d1hpga_          70 DGSSPAGTVDL---Y-----NGSTQDISSAANAVVGQAIKKSGSTTK-VTSG--TVTAVNVTVNYGDGPVYNMVRTTACS  138 (187)
T ss_dssp             SSCCCCSEEEC---S-----SSCEEECCEECCCCTTCEEEEEETTTE-EEEE--EEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred             cCcccceeEec---C-----CCcccccccceeeecccccccccccee-eeee--eeeeccccEEcCCccEeccEEcCccc
Confidence            87654433322   1     112222334432221110000000000 0000  00000000011233444444456679


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhc
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV  485 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~  485 (525)
                      |.|||||||+.      ...++||+|++..|+....+.+|++|+.++++.-
T Consensus       139 ~~GDSGgPl~~------~~~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~g  183 (187)
T d1hpga_         139 AGGDSGGAHFA------GSVALGIHSGSSGCSGTAGSAIHQPVTEALSAYG  183 (187)
T ss_dssp             CTTCTTCEEEE------TTEEEEEEEEESCCBTTBCCCEEEEHHHHHHHHT
T ss_pred             ccCCCCCeEEE------CCEEEEEEEEEecCCCCCCCEEEEEHHHHHHHhC
Confidence            99999999986      2369999999988876778999999999887653

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=4.2e-13  Score=123.60  Aligned_cols=165  Identities=19%  Similarity=0.237  Sum_probs=109.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .|||||||+.+.  ....|.+|..+................++|+.|..+.....+|||||||++++.+.+.++|+||+.
T Consensus        39 ~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~  116 (240)
T d1gvkb_          39 WVMTAAHCVDRE--LTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPR  116 (240)
T ss_dssp             EEEECGGGGCSC--CCEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCC
T ss_pred             EEEECccccccc--CCceEEeeeeeccccccccccccccceeEEEeecccccccCcceeeecccCcccccccccceeecc
Confidence            589999999764  456788898877665555555666666666665544346789999999999999999999999986


Q ss_pred             CCC--CCCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccCCcccCCchhhhchhh
Q psy3170          82 AHN--VKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAKYGEFPHQCTQYS  159 (525)
Q Consensus        82 ~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~C~~~~  159 (525)
                      ...  .......++||+.+....  .....++...+.+.+...|.......  ......++|++...    ....|..++
T Consensus       117 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c~~~~~----~~~~c~gDs  188 (240)
T d1gvkb_         117 AGTILANNSPCYITGWGLTRTNG--QLAQTLQQAYLPTVDYAICSSSSYWG--STVKNSMVCAGGDG----VRSGCQGDS  188 (240)
T ss_dssp             TTCCCCTTCCEEEEESCBSSTTC--CBCSBCEEEECCEECHHHHTSTTTTG--GGCCTTEEEECCSS----SCBCCTTCT
T ss_pred             CccccccccceeEeccccccccc--cccceeeEEEEEEEcHHHhcceeccC--CccCCceEEecCCC----CCccccCcc
Confidence            543  445678899999876544  34456667777777766665544321  23444566665432    123566554


Q ss_pred             hhcccCCcccc----cccccceeEe
Q psy3170         160 KIQDESPIALA----PALVGGVRYV  180 (525)
Q Consensus       160 ~~~~~~~l~~~----~~~~g~v~~~  180 (525)
                          ++|+.+.    ..++|.+++.
T Consensus       189 ----G~pl~~~~~~~~~lvGI~S~~  209 (240)
T d1gvkb_         189 ----GGPLHCLVNGQYAVHGVTSFV  209 (240)
T ss_dssp             ----TCEEEEEETTEEEEEEEEEEC
T ss_pred             ----ccceEEEECCEEEEEEEEEEc
Confidence                4555432    1245655554

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.39  E-value=1.1e-12  Score=119.53  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             ceeeeccCcccC-CCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~-~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.+. ....+.|.+|..++..    .....++.+.+||+|+..  ...||||||||++++.+.     +|++
T Consensus        31 ~VLTaAhCv~~~~~~~~~~v~~g~~~~~~----~~~~~i~~~~i~~~~~~~--~~~~DIAllkL~~~~~~~-----~~~~   99 (223)
T d1os8a_          31 IVLTAAHCVSGSGNNTSITATGGVVDLQS----SSAVKVRSTKVLQAPGYN--GTGKDWALIKLAQPINQP-----TLKI   99 (223)
T ss_dssp             EEEECGGGSSCSEECCCCEEEESCSBTTC----TTCEEEEEEEEEECTTCS--SSSCCCEEEEESSCCCSC-----CCEE
T ss_pred             EEEEChhhccCCCCcceeeeccccccccc----cccccceeeeeeeccccc--ccceeeeeeeeeeeeecc-----cccc
Confidence            379999999764 3456788889776532    223444555555555543  567999999999998864     3333


Q ss_pred             -CCCCCCCCCEEEEeccccccCCcccccccceeeeeeecCcccccccccc
Q psy3170          81 -RAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVK  129 (525)
Q Consensus        81 -~~~~~~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  129 (525)
                       ......+..+.+.||+.+....  ..+..++...+..++...|+..+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~  147 (223)
T d1os8a_         100 ATTTAYNQGTFTVAGWGANREGG--SQQRYLLKANVPFVSDAACRSAYGN  147 (223)
T ss_dssp             CCSSTTSSSEEEEEESSCSSTTC--CCCSBCEEEEEEEECHHHHHHHHGG
T ss_pred             cccccccccceEEeecccccccc--ccccccccceeeEeCHHHhhhhhcC
Confidence             2333557789999999876544  3456677888888998888765543

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-10  Score=107.38  Aligned_cols=130  Identities=20%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             ceeeeccCcccCCCCCeEE-EEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYV-RFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v-~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~   80 (525)
                      .|||||||+.........+ ..+.........      ..+.+.|+.|...  ...|||||++|++++.+++.++|+||+
T Consensus        53 ~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~DiAl~~L~~~~~~~~~~~p~~l~  124 (247)
T d1rjxb_          53 WVLTAAHCLEKSPRPSSYKVILGAHQEVNLEP------HVQEIEVSRLFLE--PTRKDIALLKLSSPAVITDKVIPACLP  124 (247)
T ss_dssp             EEEEEGGGGTTCSCGGGEEEEESCCBSSSCCT------TCEEEEEEEEEEC--SSSCCEEEEEESSCCCCCSSCCCCBCC
T ss_pred             EEEeeeEEEEeccCCccceeeccccccccccc------eeeEEeeccccCC--Cccchhhhhhhhccccccccccccccc
Confidence            4899999997653333333 333332222222      1233344444332  456899999999999999999999998


Q ss_pred             CCCCC--CCCCEEEEeccccccCCcccccccceeeeeeecCccccccccccccccccccceeeccC
Q psy3170          81 RAHNV--KSPTAIASGFGKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGS  144 (525)
Q Consensus        81 ~~~~~--~~~~~~v~GWG~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~  144 (525)
                      .....  ....+...|||......   ....++...+.+.+...|......  .......++|++.
T Consensus       125 ~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~c~~~  185 (247)
T d1rjxb_         125 SPNYVVADRTECFITGWGETQGTF---GAGLLMEAQLPVIENKVCNRYEFL--NGRVQSTELCAGH  185 (247)
T ss_dssp             CTTCCCCTTCEEEEEECCC----C---CCSBCEEEEEEEECHHHHTSTTTT--TTCSCTTEEEESC
T ss_pred             ccccccCCCceeeecccccccCCC---CCCcceEEEEEEEchHHhhhhhcc--CcccccceeEEec
Confidence            65443  34457788888754432   345566666666666555443222  1123344556543

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.05  E-value=5.9e-10  Score=102.55  Aligned_cols=150  Identities=18%  Similarity=0.107  Sum_probs=80.9

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEE--EEEEEeecccc---cccceEEEEEEEeCCCCCCCCCCcccceEEEEE
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYV--RFGLITKLSYS---VTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI  353 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v--~~g~~~~~~~~---~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L  353 (525)
                      ..+|+|+||++++||||+||+.+.......+  ..+........   .......+..+..++..      ...|+|||+|
T Consensus        47 ~~~GTGflI~~~~ILTa~HVv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~DiAll~l  120 (246)
T d1qtfa_          47 STLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYG------QGLDLAIIKL  120 (246)
T ss_dssp             TEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTC------TTSCCEEEEE
T ss_pred             CceEEEEEEeCCeEEEchhecccCCcceEEEEEecCCcceeeeeeecCCCceEEEEEEEecCCc------ccCceEEEEe
Confidence            4689999999999999999996642222223  33322111110   11122234444444432      2369999999


Q ss_pred             CCCcccCCCccce---ecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCC
Q psy3170         354 APPVEFSETLKPA---CLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMA  429 (525)
Q Consensus       354 ~~~~~~~~~v~pi---cL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~  429 (525)
                      +.+........++   .+... ....+....+.||......     ...........+            ...+      
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~~-----~~~~~~~~~~~~------------~~~~------  177 (246)
T d1qtfa_         121 KPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSA-----YSLYQSQIEMFN------------DSQY------  177 (246)
T ss_dssp             CCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTST-----TCCEEEEEEESS------------SSBE------
T ss_pred             ccccccccccccCceeeccccccccCCCEEEEEeCCCCCCc-----ceeeccceEeCC------------CceE------
Confidence            8766543332222   22222 2245677888998643221     111111222111            0111      


Q ss_pred             CCcCCCcCCCCCcceeecCCCceeEEEEEEeecC
Q psy3170         430 GGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       430 ~~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                       ..+...|+|||||+-   .  .+.||||.+.+.
T Consensus       178 -~~~~~~G~SGgPv~n---~--~G~vVGI~~~g~  205 (246)
T d1qtfa_         178 -FGYTEVGNSGSGIFN---L--KGELIGIHSGKG  205 (246)
T ss_dssp             -ESCCCGGGTTCEEEC---T--TCCEEEEEEEEE
T ss_pred             -EeeccCCCCCCcEEC---C--CCeEEEEEeccc
Confidence             124568999999973   1  456999998763

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.80  E-value=3.9e-09  Score=92.09  Aligned_cols=46  Identities=26%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhc
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIV  485 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~  485 (525)
                      ..+|||||||+.  .    ..++||++.+..+........|+.|..++++.-
T Consensus       132 ~~~GdSGGPv~~--~----~~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~g  177 (181)
T d2sgaa_         132 AQPGDSGGSLFA--G----STALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             CCTTCTTCEEEE--T----TEEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             ccCCCcCCeeEE--C----CEEEEEEEEecCCCCCCceEEEEEHHHHHHHhC
Confidence            458999999985  2    258999999865544445789999988877653

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=98.72  E-value=1.5e-09  Score=97.59  Aligned_cols=92  Identities=14%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             ceeeeccCcccCCC----CCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeee
Q psy3170           2 VNNHAAHCITSPLG----KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPA   77 (525)
Q Consensus         2 ~~lTAAHC~~~~~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~pi   77 (525)
                      .|||||||+.+...    ..+.+..|..+.   ........+.+++.||.|... ....+|+|||+|+.++..  ...++
T Consensus        41 ~VLTaaHCv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~DiAll~l~~~~~~--~~~~~  114 (215)
T d1p3ca_          41 KILTNGHCVYNTASRSYSAKGSVYPGMNDS---TAVNGSANMTEFYVPSGYINT-GASQYDFAVIKTDTNIGN--TVGYR  114 (215)
T ss_dssp             EEEECHHHHEETTTTEECCCCEEEETCBTT---BCTTCCEEEEEEECCHHHHHH-CCGGGCCEEEEESSCHHH--HHCCC
T ss_pred             EEEECcceeccCCCCceeeeEEEeccccCC---CCCceeEEEeEEEEecccccC-CCccceEEEEEeccCCCc--ccccc
Confidence            58999999976432    245667775443   233456889999999988642 245789999999998764  34566


Q ss_pred             ecCCCCCCCCCCEEEEeccccc
Q psy3170          78 CLNRAHNVKSPTAIASGFGKLN   99 (525)
Q Consensus        78 cL~~~~~~~~~~~~v~GWG~~~   99 (525)
                      +++......+..|.+.|||...
T Consensus       115 ~~~~~~~~~~~~~~~~G~~~~~  136 (215)
T d1p3ca_         115 SIRQVTNLTGTTIKISGYPGDK  136 (215)
T ss_dssp             CBCCCSCCTTCEEEEEECCHHH
T ss_pred             ccccccccCCceeEEEcCCCCc
Confidence            7776666778899999999754

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.55  E-value=1e-07  Score=83.06  Aligned_cols=40  Identities=33%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcC
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVS  478 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~  478 (525)
                      ....|||||||+.  .    ..++||++.+..+........|+.|.
T Consensus       135 ~~~~GdSGGPv~~--~----~~~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         135 CAEPGDSGGPLYS--G----TRAIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             CCCTTCTTCEEEE--T----TEEEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             eecCCcccceeEE--C----CEEEEEEEEeecCCCCCceEEEEEHH
Confidence            3458999999985  2    25999999885443333345666644

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=98.36  E-value=1.3e-08  Score=94.51  Aligned_cols=60  Identities=7%  Similarity=-0.125  Sum_probs=32.3

Q ss_pred             eeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCC
Q psy3170           3 NNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP   67 (525)
Q Consensus         3 ~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~   67 (525)
                      |||||||+.......+.+++|.+.+...   .....+.+..+|+.|+..  ...+|++|+++..+
T Consensus        52 VLTAAHCv~~~~~~~~~v~v~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  111 (263)
T d1arba_          52 FLTAHHCGMGTASTAASIVVYWNYQNST---CRAPNTPASGANGDGSMS--QTQSGSTVKATYAT  111 (263)
T ss_dssp             EEEEGGGSCCSHHHHHTCEEEESCCCSS---CCCTTSGGGGSCCCCCCC--CEEECEEEEEEETT
T ss_pred             EEEchhhCCCCCCcceEEEEEEEeeccc---ceeeeeeeeecccCccce--eeecchheeecCCC
Confidence            9999999976433344555664433221   222234445567777643  33445555544444

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.33  E-value=4e-07  Score=80.15  Aligned_cols=28  Identities=32%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CcCCCcCCCCCcceeecCCCceeEEEEEEeecC
Q psy3170         431 GKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       431 ~~~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                      ....++||||||++..     ...++||+|.+.
T Consensus       135 ~~~~~~GdSGGPv~~~-----~g~vvGI~sgg~  162 (198)
T d2h5ca1         135 NACMGRGDSGGSWITS-----AGQAQGVMSGGN  162 (198)
T ss_dssp             CSCCBTTCTTCEEECT-----TCBEEEEEEEEC
T ss_pred             eeeeecccccccEEcC-----CCEEEEEEcccc
Confidence            4457899999999742     335999999874

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=4.1e-06  Score=75.13  Aligned_cols=171  Identities=16%  Similarity=0.098  Sum_probs=85.0

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCc
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPV  357 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~  357 (525)
                      ....+|.+|+++ ||||++|++...  ....+....         ......+-+..         ....|+|||+++.+-
T Consensus        55 ~s~GSGfiI~~~G~IlTn~HVv~~~--~~~~v~~~~---------~~~~~a~v~~~---------~~~~dlall~v~~~~  114 (228)
T d1l1ja_          55 ASLGSGFIFDPEGYILTNYHVVGGA--DNITVTMLD---------GSKYDAEYIGG---------DEELDIAVIKIKASD  114 (228)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSSC--SSCEEECTT---------SCEEEBCCCEE---------ETTTTEEEEEBCCSS
T ss_pred             ccceEEEEeecCceEEeeccccccc--ccceEEeec---------ceeEeEEEeee---------cccccceeeEeecCC
Confidence            457899999976 999999999763  333333211         11111110111         122699999997542


Q ss_pred             ccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCCc
Q psy3170         358 EFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQ  436 (525)
Q Consensus       358 ~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C~  436 (525)
                         ..+.++.|.... ...+..+.+.||.....      ...............-..........++     .-+...-+
T Consensus       115 ---~~~~~l~l~~s~~~~~G~~V~aiG~P~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~da~i~~  180 (228)
T d1l1ja_         115 ---KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQ------HTVTVGVVSATNRRIPKPDGSGYYVGLI-----QTDAAINP  180 (228)
T ss_dssp             ---SCCCCCEECCGGGCCTTCEEEEEECTTSSS------CEEEEEEEEEEEEEEECTTSSCEEEEEE-----EESSCCCT
T ss_pred             ---CCCceEEccCccccccCCcEEEEECCCCCC------CceEeeeeeccccccccccCcCccccee-----EEecccCC
Confidence               234456665433 35788999999853211      1111111111110000000000000111     11223457


Q ss_pred             CCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEcCCchhhhcccc
Q psy3170         437 GDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV  488 (525)
Q Consensus       437 gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v~~~~~WI~~~i  488 (525)
                      |+|||||+-.     +..|+||.+....-.....-.....+....++|.+.+
T Consensus       181 G~SGGPl~n~-----~G~VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l~  227 (228)
T d1l1ja_         181 GNSGGPLLNI-----HGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (228)
T ss_dssp             TTTTSEEECS-----SSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             CCCCCcEECC-----CCEEEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHhc
Confidence            9999999742     4579999986532211111233455555566665543

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=2.4e-06  Score=76.41  Aligned_cols=154  Identities=13%  Similarity=0.098  Sum_probs=71.9

Q ss_pred             eeEeEEEEEeCC-EEEecCCCCCCCCC-----CceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEE
Q psy3170         279 KWFCGGSLISPN-YVMTAAHCITSPLG-----KPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK  352 (525)
Q Consensus       279 ~~~C~GtLIs~~-~VLTAAhCv~~~~~-----~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~  352 (525)
                      ....+|.+|+++ +|||+||++.....     ....+.+...       +.......-+...+         ..|||||+
T Consensus        25 ~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~-------dg~~~~a~vi~~d~---------~~DlAll~   88 (221)
T d2z9ia2          25 SEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFS-------DGRTAPFTVVGADP---------TSDIAVVR   88 (221)
T ss_dssp             -CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEET-------TSCEECCEEEEEET---------TTTEEEEE
T ss_pred             CcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcC-------CceeeeeeeEeecc---------ccceeeee
Confidence            346899999987 99999999743211     1111222111       11122222222222         25999999


Q ss_pred             ECCCcccCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCc
Q psy3170         353 IAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGK  432 (525)
Q Consensus       353 L~~~~~~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~  432 (525)
                      +..+....   .+..........+......|+....... .......................  .....+-     ...
T Consensus        89 ~~~~~~~~---~~~~~~~~~~~~g~~v~~~g~p~g~~~~-~~~g~~~~~~~~~~~~~~~~~~~--~~~~~i~-----~~~  157 (221)
T d2z9ia2          89 VQGVSGLT---PISLGSSSDLRVGQPVLAIGSPLGLEGT-VTTGIVSALNRPVSTTGEAGNQN--TVLDAIQ-----TDA  157 (221)
T ss_dssp             CCSCCSCC---CCEECCGGGCCTTCEEEEEECGGGCTTE-EEEEEEEEEEEEEEC-------C--CEEEEEE-----ECS
T ss_pred             ecccccce---eeccccccccccCceeeeeeccCCCccc-ccccceeeccccccccccccccc--cccceEE-----Eee
Confidence            98765422   1222233334567788888875321110 00111111111111000000000  0001111     123


Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCC
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ  464 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~  464 (525)
                      ..-.|.|||||+-.     +..|+||.+....
T Consensus       158 ~i~~G~SGGPv~n~-----~G~vVGI~~~~~~  184 (221)
T d2z9ia2         158 AINPGNSGGALVNM-----NAQLVGVNSAIAT  184 (221)
T ss_dssp             CCCTTCTTEEEECT-----TSEEEEEEEEECC
T ss_pred             cccCCCCCCccCcC-----CCEEEEEEEEEec
Confidence            45679999999742     4579999987643

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3e-06  Score=74.73  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=47.9

Q ss_pred             EeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCccc
Q psy3170         281 FCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEF  359 (525)
Q Consensus       281 ~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~~  359 (525)
                      .=+|.+|+++ +|||+|||+.+.  ..+.|...         +......+-+..+|         ..|+|||+++.+-. 
T Consensus        43 ~GSGf~i~~~G~IlT~~HVv~~~--~~i~V~~~---------~g~~~~a~vv~~d~---------~~dlall~~~~~~~-  101 (205)
T d1lcya2          43 NGSGFVVAADGLIVTNAHVVADR--RRVRVRLL---------SGDTYEAVVTAVDP---------VADIATLRIQTKEP-  101 (205)
T ss_dssp             EEEEEEEETTTEEEECHHHHTTC--SEEEEECT---------TSCEEEEEEEEEET---------TTTEEEEECCCSSC-
T ss_pred             ceEEEEEECCCeEEEechhhhhh--hhcccccc---------ccccccceeeeeec---------ceeeEEEEecCCCC-
Confidence            5789999987 999999999762  33332211         11222222222232         25999999876532 


Q ss_pred             CCCccceecCCC-CCCCCCcEEEEEee
Q psy3170         360 SETLKPACLNRA-HNVKSPTAIASGFG  385 (525)
Q Consensus       360 ~~~v~picL~~~-~~~~~~~~~~~Gwg  385 (525)
                         +.++.+... +...++.+...|+.
T Consensus       102 ---~~~l~l~~~~~~~~G~~v~~iG~P  125 (205)
T d1lcya2         102 ---LPTLPLGRSADVRQGEFVVAMGSP  125 (205)
T ss_dssp             ---CCCCCBCCGGGCCTTCEEEECCCT
T ss_pred             ---CcEEEccccccCCCCCEEEEEECC
Confidence               335555433 23567778777774

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.5e-05  Score=67.90  Aligned_cols=144  Identities=16%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             ceeEeEEEEEeCC-EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         278 VKWFCGGSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       278 ~~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ....-+|.+|+++ +|||++|.+..  ...+.|.+.         +......+-+..++         ..|+|||++..+
T Consensus        34 ~~s~GSGfvi~~~G~IlTn~HVV~~--~~~i~v~~~---------~~~~~~~~~~~~~~---------~~Dlall~~~~~   93 (210)
T d2qf3a1          34 IRTLGSGVIMDQRGYIITNKHVIND--ADQIIVALQ---------DGRVFEALLVGSDS---------LTDLAVLKINAT   93 (210)
T ss_dssp             EEEEEEEEECSTTCEEEEEHHHHTT--CSEEEEECT---------TSCEEECEEEEEET---------TTTEEEEECCCS
T ss_pred             cccceEEEEEECCceEEechhhccc--ccccccccc---------cccceeeEEecccc---------ccchhheecccc
Confidence            3567999999976 99999999865  233333321         11222222223332         269999999776


Q ss_pred             cccCCCccceecCCC-CCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~-~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      ..+    .+..+... ....+..+...|+......      ......+........   .......++..     ....-
T Consensus        94 ~~~----~~~~~~~~~~~~~g~~v~~~G~p~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~i~~-----~a~i~  155 (210)
T d2qf3a1          94 GGL----PTIPINARRVPHIGDVVLAIGNPYNLGQ------TITQGIISATGRIGL---NPTGRQNFLQT-----DASIN  155 (210)
T ss_dssp             SCC----CCCCCCTTCCCCTTBEEEEEECGGGSSS------EEEEEEEEESCC------------CCEEE-----CSCCC
T ss_pred             ccc----cccccccccccccceEEEEecccccccc------ccccccceeeeeeee---ccccceeEEEE-----eeeEE
Confidence            432    22333222 2345677777777532211      111111111111111   10011223332     22355


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecCC
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGRQ  464 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~~  464 (525)
                      .|+|||||+-.     +..|+||.+....
T Consensus       156 ~G~SGGPv~n~-----~G~vVGI~~~~~~  179 (210)
T d2qf3a1         156 HGNSGGALVNS-----LGELMGINTLSFD  179 (210)
T ss_dssp             TTCTTCEEEET-----TCCEEEEEEEEC-
T ss_pred             eccCCCceEee-----cCEEEEEEEEEee
Confidence            79999999753     3469999987643

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.79  E-value=7.7e-06  Score=74.07  Aligned_cols=90  Identities=16%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccC----CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCcc---CCCce
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSY----SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE---FSETL   74 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~----~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~---~~~~v   74 (525)
                      .|||||||+.........+.++.......    ......+.+..+..+|..      ..+|+|||+|+.+..   +.+.+
T Consensus        66 ~ILTa~Hvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~D~All~l~~~~~~~~~~~~~  139 (242)
T d1agja_          66 TVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFG------AGVDLALIRLKPDQNGVSLGDKI  139 (242)
T ss_dssp             EEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTC------TTSCCEEEEECCCTTSCCHHHHS
T ss_pred             EEEEcccEeccCCCceEEEEEeecceecccceeeeccceEEEEEEeeecCC------CcCcEEEEEeccccccccccccC
Confidence            47999999976543333343332211111    112235667776665532      246999999987643   34567


Q ss_pred             eeeecCCC-CCCCCCCEEEEeccc
Q psy3170          75 KPACLNRA-HNVKSPTAIASGFGK   97 (525)
Q Consensus        75 ~picL~~~-~~~~~~~~~v~GWG~   97 (525)
                      .|+.|... ....+..+++.||..
T Consensus       140 ~~~~l~~s~~~~~G~~v~~~GyP~  163 (242)
T d1agja_         140 SPAKIGTSNDLKDGDKLELIGYPF  163 (242)
T ss_dssp             CCCEECCSTTCCTTCEEEEEECCT
T ss_pred             cceeecccccccCCcEEEEEEcCC
Confidence            88888754 345688899999964

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6.4e-05  Score=67.91  Aligned_cols=142  Identities=17%  Similarity=0.193  Sum_probs=76.4

Q ss_pred             eeEeEEEEEeCC--EEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCC
Q psy3170         279 KWFCGGSLISPN--YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP  356 (525)
Q Consensus       279 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~  356 (525)
                      ...-+|.+|+++  +|||.+|.+.+  .....+.+.         +......+.+...+         ..|+|||+++.+
T Consensus        75 ~~~GSG~iI~~~~g~IlTn~HVv~~--~~~~~v~~~---------~~~~~~a~~~~~d~---------~~dlavl~i~~~  134 (249)
T d1ky9a2          75 MALGSGVIIDADKGYVVTNNHVVDN--ATVIKVQLS---------DGRKFDAKMVGKDP---------RSDIALIQIQNP  134 (249)
T ss_dssp             EEEEEEEEEETTTTEEEEEHHHHTT--EEEEEEEET---------TSCEEEEEEEEEET---------TTTEEEEEESSC
T ss_pred             cccccEEEEeccCceEEeecccccc--ceeeeeeec---------ccccccceeeEecc---------chhhceeeeccc
Confidence            456799999854  99999999865  222333221         11222233333332         259999999865


Q ss_pred             cccCCCccceecCCCC-CCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccCCCCCCcEEEEeCCCCcCCC
Q psy3170         357 VEFSETLKPACLNRAH-NVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTC  435 (525)
Q Consensus       357 ~~~~~~v~picL~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~~~~~~~~Ca~~~~~~~~~C  435 (525)
                      -    .+.++.|...+ ...++.+.+.|+....      ........+........   ........+-.     +...-
T Consensus       135 ~----~~~~~~l~~~~~~~~G~~v~aiG~P~g~------~~tvt~~~~~~~~~~~~---~~~~~~~~iqt-----da~i~  196 (249)
T d1ky9a2         135 K----NLTAIKMADSDALRVGDYTVAIGNPFGL------GETVTSGIVSALGRSGL---NAENYENFIQT-----DAAIN  196 (249)
T ss_dssp             C----SCCCCCBCCGGGCCTTCEEEEEECTTSS------SCEEEEEEEEEESSCC--------CCCCEEE-----SCCCT
T ss_pred             c----cceEEEcCCcCcCCcCCEEEEEeccccc------CCceeecceeecccccc---cCccccceEEE-----eeeec
Confidence            3    34566665543 3568888888874211      11111111221111110   00111222222     22456


Q ss_pred             cCCCCCcceeecCCCceeEEEEEEeecC
Q psy3170         436 QGDSGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       436 ~gDsGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                      +|.|||||+-.     ...|+||.+...
T Consensus       197 ~GnSGGPl~n~-----~G~vIGI~t~~~  219 (249)
T d1ky9a2         197 RGNAGGALVNL-----NGELIGINTAIL  219 (249)
T ss_dssp             TSCCCSEEECT-----TSCEEEEEECSS
T ss_pred             CCCCCceEECC-----CCEEEEEEEEEe
Confidence            89999999742     456999998764

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.64  E-value=0.00019  Score=62.29  Aligned_cols=154  Identities=12%  Similarity=0.045  Sum_probs=78.0

Q ss_pred             eeEeEEEEEeCCEEEecCCCCCCCCCCceEEEEEEEeecccccccceEEEEEEEeCCCCCCCCCCcccceEEEEECCCcc
Q psy3170         279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVE  358 (525)
Q Consensus       279 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIAll~L~~~~~  358 (525)
                      ...|.|..|..+++||++|.+...   ...+.++......     ....+.+...-..  .  .....|||||+|++...
T Consensus        22 ~~~g~gl~v~g~~~l~~~H~~~~~---~~~i~~~~~~~~~-----~~~~~~~~~~~v~--~--~d~~~Dlall~l~~~~~   89 (199)
T d2bhga1          22 VAICCATGVFGTAYLVPRHLFAEK---YDKIMLDGRAMTD-----SDYRVFEFEIKVK--G--QDMLSDAALMVLHRGNK   89 (199)
T ss_dssp             EEEEEEEEEEBTEEEEEHHHHTSC---CSEEEETTEEECG-----GGEEEECCEECCS--S--SCEECSEEEEEESSSCC
T ss_pred             EEEeEEEEEECCEEEECCcEeecC---CCEEEEeeeEEEE-----EeccceEEEEEEE--e--cCCCccEEEEEcCCCCc
Confidence            457999999999999999987542   2223232210000     0111111111111  1  23447999999987655


Q ss_pred             cCCCccceecCCCCCCCCCcEEEEEeeeccCCCCcccccceEEEEEeeChhhhhcccC----CCCCCcEEEEeCCCCcCC
Q psy3170         359 FSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQET----TLISSQLCATVMAGGKDT  434 (525)
Q Consensus       359 ~~~~v~picL~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~v~~~~~~~C~~~~~----~~~~~~~Ca~~~~~~~~~  434 (525)
                      |.+...... .......+....+.|+....      ...+....  +.   .+.....    ....+.+...     ...
T Consensus        90 ~~~~~~~~~-~~~~~~~g~~v~~ig~p~~~------~~~~~~~~--~~---~~~~~~~~~~g~~~~~~~~y~-----a~t  152 (199)
T d2bhga1          90 VRDITKHFR-DTARMKKGTPVVGVVNNADV------GRLIFSGE--AL---TYKDIVVSMDGDTMPGLFAYK-----AAT  152 (199)
T ss_dssp             BCCCGGGBC-SSCEECTTCEEEEEEEETTT------EEEEEEEE--ES---SCEECCC-----CCTTEEEEE-----CCC
T ss_pred             CCccccccc-ccccccccceEEEEEcCCCC------CceEEEEE--EE---EecceeecCCCccccCEEEEE-----ecc
Confidence            544332221 11222456777788875321      11111111  11   1111100    0112333322     134


Q ss_pred             CcCCCCCcceeecCCCceeEEEEEEeecC
Q psy3170         435 CQGDSGGPLQTIMPDLCMYNIIGITSYGR  463 (525)
Q Consensus       435 C~gDsGgPL~~~~~~~~~~~l~GI~S~g~  463 (525)
                      -+|++||||+...+.  ...++||.+.|.
T Consensus       153 ~~G~cGgplv~~~~~--~~~IvGih~aG~  179 (199)
T d2bhga1         153 RAGYAGGAVLAKDGA--DTFIVGTHSAGG  179 (199)
T ss_dssp             CTTCTTCEEEEEETT--EEEEEEEEEEEE
T ss_pred             CCCCcCCeEEEecCC--eEEEEEEEeCCC
Confidence            479999999876544  678999999884

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=97.26  E-value=0.0018  Score=56.63  Aligned_cols=49  Identities=27%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             CCCcCCCCCcceeecCCCceeEEEEEEeecCCCCCCCCceEEEEc-CCchhhhcccc
Q psy3170         433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRV-SYYVPWIVHTV  488 (525)
Q Consensus       433 ~~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~c~~~~~p~v~t~v-~~~~~WI~~~i  488 (525)
                      .+-.|+|||||+-..+    ..|+||.+.+..-   ..-..|+.| ..+.++|.+.-
T Consensus       143 ~t~~GnSGGPlvd~~d----G~VVGIhs~~~~~---~~~n~~~~i~~~~~~~l~~~~  192 (219)
T d1lvmb_         143 QTKDGQCGSPLVSTRD----GFIVGIHSASNFT---NTNNYFTSVPKNFMELLTNQE  192 (219)
T ss_dssp             CCCTTCTTCEEEETTT----CCEEEEEEEEETT---SSSEEEEECCTTHHHHHHCGG
T ss_pred             EcCCCCCCCceEEcCC----CEEEEEEEeeecc---cceEEEEecCHHHHHHHhhcc
Confidence            4678999999986332    3599999987432   124567878 44778777653

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=97.12  E-value=0.00026  Score=60.49  Aligned_cols=52  Identities=15%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             eeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCcee
Q psy3170           3 NNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLK   75 (525)
Q Consensus         3 ~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~   75 (525)
                      +||||||+...  .  .+..        ....+...+.....+|+         +|+|+++++.+......+.
T Consensus        28 ilTAaHCv~~~--~--~~~~--------~~~~~~~~~~~~~~~~~---------~D~a~~~~~~~~~~~~~~~   79 (187)
T d1hpga_          28 FVTAGHCTNIS--A--NWSA--------SSGGSVVGVREGTSFPT---------NDYGIVRYTDGSSPAGTVD   79 (187)
T ss_dssp             EEECHHHHTTC--S--EEES--------STTCCEEEEEEEEECSB---------SCEEEEEECSSCCCCSEEE
T ss_pred             EEEchhcCCCC--C--eeEE--------CCCCEEEEEEEeecccC---------CchhheecccCcccceeEe
Confidence            79999998652  1  1211        22345666776777664         4999999998877665543

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.04  E-value=0.001  Score=58.17  Aligned_cols=87  Identities=11%  Similarity=0.032  Sum_probs=44.5

Q ss_pred             ceeeeccCcccCCCC--CeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeec
Q psy3170           2 VNNHAAHCITSPLGK--PRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL   79 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL   79 (525)
                      +|||||||+.+....  .+.+.......  ................        ...+|+|||+|+.+........+...
T Consensus        45 ~vLTAaHcv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~D~all~l~~~~~~~~~~~~~~~  114 (216)
T d2o8la1          45 TLLTNKHVVDATHGDPHALKAFPSAINQ--DNYPNGGFTAEQITKY--------SGEGDLAIVKFSPNEQNKHIGEVVKP  114 (216)
T ss_dssp             EEEECHHHHHTTTTCGGGEEEEETCCBT--TBCTTCCEEEEEEEEC--------SSSSCCEEEEECCCTTSCCTTTSSCC
T ss_pred             EEEEeeeeeccCCCceEEEEEEeccccc--ceeeeeeEEeeeeecc--------ccCCceEEEEecccccccccccceee
Confidence            589999999775332  22333332221  1111122233332221        23469999999987765443333222


Q ss_pred             ---CCC-CCCCCCCEEEEecccc
Q psy3170          80 ---NRA-HNVKSPTAIASGFGKL   98 (525)
Q Consensus        80 ---~~~-~~~~~~~~~v~GWG~~   98 (525)
                         ... ....+....+.||...
T Consensus       115 ~~~~~~~~~~~g~~~~~~g~~~~  137 (216)
T d2o8la1         115 ATMSNNAETQTNQNITVTGYPGD  137 (216)
T ss_dssp             CEECCCTTCCTTCEEEEEECCTT
T ss_pred             eeccccccccCCceeEEEEccCC
Confidence               221 2234556778888743

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.37  E-value=0.01  Score=52.75  Aligned_cols=91  Identities=10%  Similarity=-0.068  Sum_probs=51.3

Q ss_pred             ceeeeccCcccCCC--CCeEEEEceeecccC---CcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceee
Q psy3170           2 VNNHAAHCITSPLG--KPRYVRFGLITKLSY---SVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKP   76 (525)
Q Consensus         2 ~~lTAAHC~~~~~~--~~~~v~~G~~~~~~~---~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~p   76 (525)
                      .|||||||+.+...  ..+.+..+.......   ......+.+..+..++..      ...|+|||+|+.+........+
T Consensus        59 ~ILTa~HVv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~DiAll~l~~~~~~~~~~~~  132 (246)
T d1qtfa_          59 TIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYG------QGLDLAIIKLKPNEKGESAGDL  132 (246)
T ss_dssp             EEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTC------TTSCCEEEEECCCTTSCCHHHH
T ss_pred             eEEEchhecccCCcceEEEEEecCCcceeeeeeecCCCceEEEEEEEecCCc------ccCceEEEEecccccccccccc
Confidence            48999999976422  334555554332211   123345666666655532      2359999999887654433222


Q ss_pred             ee---cCC-CCCCCCCCEEEEecccc
Q psy3170          77 AC---LNR-AHNVKSPTAIASGFGKL   98 (525)
Q Consensus        77 ic---L~~-~~~~~~~~~~v~GWG~~   98 (525)
                      ++   +.. .....+....+.||...
T Consensus       133 ~~~~~~~~~~~~~~g~~i~~~G~P~~  158 (246)
T d1qtfa_         133 IQPANIPDHIDIAKGDKYSLLGYPYN  158 (246)
T ss_dssp             SCCCCCCSSCCCCTTCEEEEEECCTT
T ss_pred             CceeeccccccccCCCEEEEEeCCCC
Confidence            22   221 22345667888999643

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=95.16  E-value=0.1  Score=43.31  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             CCcCCCCCcceeecCCCceeEEEEEEeecCC
Q psy3170         434 TCQGDSGGPLQTIMPDLCMYNIIGITSYGRQ  464 (525)
Q Consensus       434 ~C~gDsGgPL~~~~~~~~~~~l~GI~S~g~~  464 (525)
                      +-.|+.||||+.      ...++||.+.|.+
T Consensus       142 t~~g~cg~~~~~------~~~i~G~h~~g~~  166 (180)
T d1cqqa_         142 TKSGYCGGVLYK------IGQVLGIHVGGNG  166 (180)
T ss_dssp             CCTTCTTCEEEE------TTEEEEEEEEECS
T ss_pred             CCCcccCCeEEE------CCCEEEEEeccCC
Confidence            457999999985      2359999998854

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=94.06  E-value=0.05  Score=45.67  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=37.2

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCC-ceeeeecC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSE-TLKPACLN   80 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~-~v~picL~   80 (525)
                      .+||||||+....    .+.+.       ......+.......||         .+|+||||++.+..... ......+.
T Consensus        27 ~ilTA~Hcv~~~~----~~~~~-------~~~~~~~g~~~~~~~~---------~~D~All~~~~~~~~~~~~~~~~~v~   86 (185)
T d2qaaa1          27 YFLTAGHCTDGAT----TWWAN-------SARTTVLGTTSGSSFP---------NNDYGIVRYTNTTIPKDGTVGGQDIT   86 (185)
T ss_dssp             EEEECHHHHTTCC----EEESS-------TTSCSEEEEEEEEECS---------BSCEEEEEECCSSSCCCSEETTEECC
T ss_pred             EEEECCCccCCCC----EEEEE-------cCCCeEeeeEEeccCC---------CCCeEEEEeccCCcccccccCceecc
Confidence            3799999986531    11111       1222333333333444         35999999987654321 11112222


Q ss_pred             -CCCCCCCCCEEEEecc
Q psy3170          81 -RAHNVKSPTAIASGFG   96 (525)
Q Consensus        81 -~~~~~~~~~~~v~GWG   96 (525)
                       ......+......|+.
T Consensus        87 ~~~~~~~G~~v~~~G~~  103 (185)
T d2qaaa1          87 SAANATVGMAVTRRGST  103 (185)
T ss_dssp             EECCCCTTCEEEEEETT
T ss_pred             CCCcCCCCCEEEEccCC
Confidence             1223456666666653

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=92.88  E-value=0.15  Score=42.83  Aligned_cols=14  Identities=14%  Similarity=0.136  Sum_probs=11.3

Q ss_pred             cCceEEEEeCCCcc
Q psy3170          56 YHDIALLKIAPPVE   69 (525)
Q Consensus        56 ~nDIALl~L~~~v~   69 (525)
                      .+|+|||+++.+..
T Consensus        61 ~~D~All~~~~~~~   74 (198)
T d2h5ca1          61 GNDRAWVSLTSAQT   74 (198)
T ss_dssp             BSCEEEEEECTTSE
T ss_pred             CCcEEEEEecCCCc
Confidence            35999999988654

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=92.50  E-value=0.052  Score=45.32  Aligned_cols=40  Identities=10%  Similarity=0.141  Sum_probs=22.8

Q ss_pred             CceEEEEeCCCccCCCceee-----eecC-CCCCCCCCCEEEEecc
Q psy3170          57 HDIALLKIAPPVEFSETLKP-----ACLN-RAHNVKSPTAIASGFG   96 (525)
Q Consensus        57 nDIALl~L~~~v~~~~~v~p-----icL~-~~~~~~~~~~~v~GWG   96 (525)
                      +|+|||+++.+......+..     +.+. ......+......|+.
T Consensus        54 ~D~Ali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~G~~   99 (181)
T d2sgaa_          54 NDYGIIRHSNPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGST   99 (181)
T ss_dssp             SCEEEEEESCGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETT
T ss_pred             cceEEEEecCcccccceeecCCCceeeecCCCcCCCCCEEEEeCCC
Confidence            69999999988766433221     1111 1223446666666764

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.21  Score=42.27  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=40.9

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+|||+.+.  ..+.|...         .+..+..+-+...|         ..|+|||+++.+-.+    .++.+..
T Consensus        54 ~IlT~~HVv~~~--~~i~V~~~---------~g~~~~a~vv~~d~---------~~dlall~~~~~~~~----~~l~l~~  109 (205)
T d1lcya2          54 LIVTNAHVVADR--RRVRVRLL---------SGDTYEAVVTAVDP---------VADIATLRIQTKEPL----PTLPLGR  109 (205)
T ss_dssp             EEEECHHHHTTC--SEEEEECT---------TSCEEEEEEEEEET---------TTTEEEEECCCSSCC----CCCCBCC
T ss_pred             eEEEechhhhhh--hhcccccc---------ccccccceeeeeec---------ceeeEEEEecCCCCC----cEEEccc
Confidence            479999999663  33444322         23344444444333         249999999865433    3454543


Q ss_pred             C-CCCCCCCEEEEecc
Q psy3170          82 A-HNVKSPTAIASGFG   96 (525)
Q Consensus        82 ~-~~~~~~~~~v~GWG   96 (525)
                      . ....+....+.|+-
T Consensus       110 ~~~~~~G~~v~~iG~P  125 (205)
T d1lcya2         110 SADVRQGEFVVAMGSP  125 (205)
T ss_dssp             GGGCCTTCEEEECCCT
T ss_pred             cccCCCCCEEEEEECC
Confidence            2 24557777777764

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.27  E-value=0.29  Score=41.92  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=23.3

Q ss_pred             CceEEEEeCCCccCCCceeeeecCCCCCCCCCCEEEEecc
Q psy3170          57 HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFG   96 (525)
Q Consensus        57 nDIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~v~GWG   96 (525)
                      .|+|||++..+.....   +..+.......+....+.|+-
T Consensus        82 ~DlAll~~~~~~~~~~---~~~~~~~~~~~g~~v~~~g~p  118 (221)
T d2z9ia2          82 SDIAVVRVQGVSGLTP---ISLGSSSDLRVGQPVLAIGSP  118 (221)
T ss_dssp             TTEEEEECCSCCSCCC---CEECCGGGCCTTCEEEEEECG
T ss_pred             cceeeeeeccccccee---eccccccccccCceeeeeecc
Confidence            5999999998754331   112223334567778888875

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=1.6  Score=36.52  Aligned_cols=72  Identities=15%  Similarity=0.096  Sum_probs=41.1

Q ss_pred             ceeeeccCcccCCCCCeEEEEceeecccCCcCcceEEEEEEEECCCCCCCCCCCcCceEEEEeCCCccCCCceeeeecCC
Q psy3170           2 VNNHAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR   81 (525)
Q Consensus         2 ~~lTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picL~~   81 (525)
                      .+||+||.+...  ..+.|.+.         ....+..+-+..++         ..|+|||++..+-...    +..+..
T Consensus        48 ~IlTn~HVV~~~--~~i~v~~~---------~~~~~~~~~~~~~~---------~~Dlall~~~~~~~~~----~~~~~~  103 (210)
T d2qf3a1          48 YIITNKHVINDA--DQIIVALQ---------DGRVFEALLVGSDS---------LTDLAVLKINATGGLP----TIPINA  103 (210)
T ss_dssp             EEEEEHHHHTTC--SEEEEECT---------TSCEEECEEEEEET---------TTTEEEEECCCSSCCC----CCCCCT
T ss_pred             eEEechhhcccc--cccccccc---------cccceeeEEecccc---------ccchhheecccccccc----cccccc
Confidence            379999998653  44555432         12334444444433         3599999998765432    222322


Q ss_pred             -CCCCCCCCEEEEeccc
Q psy3170          82 -AHNVKSPTAIASGFGK   97 (525)
Q Consensus        82 -~~~~~~~~~~v~GWG~   97 (525)
                       .....+....+.|+..
T Consensus       104 ~~~~~~g~~v~~~G~p~  120 (210)
T d2qf3a1         104 RRVPHIGDVVLAIGNPY  120 (210)
T ss_dssp             TCCCCTTBEEEEEECGG
T ss_pred             ccccccceEEEEecccc
Confidence             2334566677777753