Psyllid ID: psy3212

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN
Secondary Structure (PSIPRED)
cccccccEEEEEEEEccccccEEEEEEccccccccccccccHHHHccccccccEEEEccccccccccccEEEEcccccccEEEEcEEEEccEEEEEEEEEcEEEEccEEEcccEEEEEEcccccccccHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEccEEEEccccc
Secondary Structure Prediction (SSPRO)
EEEEcccEEEEEEEEccccEEEEEEEEcccccEEEEEcccccccHHHHccccEEEEEEccccccccccEEEEEccccHHHEEEEEEEEEccEEccEEEEEccEEEccEEEcccEEEEEcccEccEEEcHHHHHHHHHHcccEEcccccEEccccHHHHcccEEEEEccEEEEEcccc
Coil and Loop (DISEMBL)
mrssyqaqyygtislgtppqeFKVIFdtgssnlwipsqhcsILNIacsvdkdkfvghshfrnasdenggeimfggvdkdkfvgdityspvsrkgywqfGVESIKIEKNVYCSNCQAIAdtgtsliigPSKVIAELNKLIgavplangpakvdcdnldkmpnvdiilggknftltrtn
Flexible Loop (DISEMBL)
mrssyqaqyygtislgtppqEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHfrnasdenggeiMFGGVDKDKFVGDITyspvsrkgywQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLangpakvdcdnldkmpnvdiilggknftltrtn
Low Complexity Region (SEG)
MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN
Disordered region (IsUnstruct)
*******QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFT*****
Disordered Region (DISOPRED)
MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL****
Disordered Region (DISEMBL)
MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN
Disordered Region (DISPRO)
MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q03168	387	Lysosomal aspartic protea	N/A	N/A	0.638	0.291	0.5	9e-28
P85136	224	Cardosin-E (Fragments) OS	N/A	N/A	0.745	0.589	0.439	1e-27
P85139	265	Cardosin-H (Fragments) OS	N/A	N/A	0.751	0.501	0.351	5e-24
P85138	266	Cardosin-G (Fragments) OS	N/A	N/A	0.751	0.5	0.346	2e-23
P16228	398	Cathepsin E OS=Rattus nor	yes	N/A	0.638	0.283	0.453	5e-22
Q9DEX3	396	Cathepsin D OS=Clupea har	N/A	N/A	0.644	0.287	0.413	7e-22
P18242	410	Cathepsin D OS=Mus muscul	yes	N/A	0.700	0.302	0.401	1e-21
Q805F3	397	Cathepsin E-A OS=Xenopus	N/A	N/A	0.638	0.284	0.448	2e-21
P00795	345	Cathepsin D OS=Sus scrofa	no	N/A	0.723	0.371	0.389	2e-21
O93428	396	Cathepsin D OS=Chionodrac	N/A	N/A	0.644	0.287	0.413	5e-21

>sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2

 Score =  122 bits (307), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
           R+ S   GGEI+FGG D +K+ GD TY  V RK YWQF ++S+K+    +C+N C+AIAD
Sbjct: 213 RDPSAAEGGEIIFGGSDSNKYTGDFTYLSVDRKAYWQFKMDSVKVGDTEFCNNGCEAIAD 272

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           TGTSLI GP   +  +NK IG  P+ NG   VDC  + K+P +  +LGGK+F L
Sbjct: 273 TGTSLIAGPVSEVTAINKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDL 326

May degrade organelles involved in the biosynthesis and secretion of vitellogenin.
Aedes aegypti (taxid: 7159)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp|P85136|CARDE_CYNCA Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 89/141 (63%), Gaps = 9/141 (6%)

Query: 9   YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF-----RNA 63
           Y+G I +GTPPQ++ VI+DTGSS LW+PS       I  + + D    H  F     RN 
Sbjct: 17  YFGEIGIGTPPQKYTVIYDTGSSVLWVPSSKEQDF-IEATDETDNVFLHRRFSFWLNRNV 75

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAIADT 120
            +E GGE++FGG+D + F GD TY PV+ + YWQFG+  + I  +   +C+  CQA AD+
Sbjct: 76  DEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADS 135

Query: 121 GTSLIIGPSKVIAELNKLIGA 141
           GTSL+ GP+ ++ ++N  IGA
Sbjct: 136 GTSLLSGPTAIVTQINHAIGA 156

Aspartic protease with a high preference for bonds between hydrophobic residues.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P85139|CARDH_CYNCA Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 49/182 (26%)

Query: 9   YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN-------------IACSVDKDKFV 55
           Y+G I +GTPPQ+F VIFDTGSS LW+PS     +              I  + + D   
Sbjct: 17  YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAHSMYESSGSSTYKEQDFIEATDETDNVF 76

Query: 56  GHSHF---------------------------------RNASDENGGEIMFGGVDKDKFV 82
            H  F                                 RN  +E GGE++FGG+D + F 
Sbjct: 77  LHRLFDGILGLSFQTISVPVWYNMLNQGLVKRFSFWLNRNVDEEEGGELVFGGLDPNHFR 136

Query: 83  GDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAIADTGTSLIIGPSKVIAELNKLI 139
           GD TY PV+ + YWQFG+  + I  +   +C+  CQA AD+GTSL+ GP+ ++ ++N  I
Sbjct: 137 GDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAI 196

Query: 140 GA 141
           GA
Sbjct: 197 GA 198

Aspartic protease with a high preference for bonds between hydrophobic residues.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P85138|CARDG_CYNCA Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 90/182 (49%), Gaps = 49/182 (26%)

Query: 9   YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN-------------IACSVDKDKFV 55
           Y+G I +GTPPQ+F VIFDTGSS LW+PS     +              I  + + D   
Sbjct: 17  YFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKAHSMYESSDSSTYKEQDFIEATEEADNVF 76

Query: 56  GHSHF---------------------------------RNASDENGGEIMFGGVDKDKFV 82
            +  F                                 RN  +E GGE++FGG+D + F 
Sbjct: 77  LNRLFDGILGLSFQTISVPVWYNMVNQGLVKRFSFWLNRNVDEEEGGELVFGGLDPNHFR 136

Query: 83  GDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAIADTGTSLIIGPSKVIAELNKLI 139
           GD TY PV+ + YWQFG+  + I  +   +C+  CQA AD+GTSL+ GP+ ++ ++N  I
Sbjct: 137 GDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAI 196

Query: 140 GA 141
           GA
Sbjct: 197 GA 198

Aspartic protease with a high preference for bonds between hydrophobic residues.

Cynara cardunculus (taxid: 4265)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|P16228|CATE_RAT Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 6/119 (5%)

Query: 63  ASDENGG---EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAI 117
           +SD  GG   E+ FGG D   F G + + PV+++GYWQ  ++ I++   V +CS  CQAI
Sbjct: 222 SSDPQGGSGSELTFGGYDPSHFSGSLNWIPVTKQGYWQIALDGIQVGDTVMFCSEGCQAI 281

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRT 176
            DTGTSLI GP K I +L + IGA P+ +G   VDC  L+ MPNV  ++ G ++TL+ T
Sbjct: 282 VDTGTSLITGPPKKIKQLQEAIGATPM-DGEYAVDCATLNMMPNVTFLINGVSYTLSPT 339

May have a role in immune function. Probably involved in the processing of antigenic peptides during MHC class II-mediated antigen presentation. May play a role in activation-induced lymphocyte depletion in the thymus, and in neuronal degeneration and glial cell activation in the brain.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 3

EC: 4

>sp|Q9DEX3|CATD_CLUHA Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1

 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAIA 118
           RN   E GGE++ GG D   + GD  Y PV+R+ YWQ  ++ + I   +  C + C+AI 
Sbjct: 221 RNPDTEPGGELLLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGMSIGSQLTLCKDGCEAIV 280

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSLI GP   +  L K IGA+PL  G   +DC  +  +P +   +GGK ++LT
Sbjct: 281 DTGTSLITGPPAEVRALQKAIGAIPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLT 336

Acid protease active in intracellular protein breakdown.

Clupea harengus (taxid: 7950)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 5

>sp|P18242|CATD_MOUSE Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 3/127 (2%)

Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--E 106
           VDK+ F  + + R+   + GGE+M GG D   + G+++Y  V+RK YWQ  ++ +++  E
Sbjct: 222 VDKNIFSFYLN-RDPEGQPGGELMLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNE 280

Query: 107 KNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
             +    C+AI DTGTSL++GP + + EL K IGAVPL  G   + C+ +  +P V + L
Sbjct: 281 LTLCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGEYMIPCEKVSSLPTVYLKL 340

Query: 167 GGKNFTL 173
           GGKN+ L
Sbjct: 341 GGKNYEL 347

Acid protease active in intracellular protein breakdown.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 5

>sp|Q805F3|CATEA_XENLA Cathepsin E-A OS=Xenopus laevis GN=ctse-a PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 3/116 (2%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCS-NCQAIA 118
           RN +   GGE++FGG D  +F G + + PV+ +GYWQ  +++++I   V +CS  CQAI 
Sbjct: 217 RNPNSAVGGELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNVQINGEVLFCSGGCQAIV 276

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSLI GPS  I +L  +IGA   ANG  +VDC  L++MP V   + G  + +T
Sbjct: 277 DTGTSLITGPSSDIVQLQNIIGA-SAANGDYEVDCSVLNEMPTVTFTINGIGYQMT 331

May have a role in immune function. Probably involved in the processing of antigenic peptides during MHC class II-mediated antigen presentation.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 3

EC: 4

>sp|P00795|CATD_PIG Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN 108
           VDKD F  + + R+   + GGE+M GG+D   + G + Y  V+RK YWQ  +  + +  +
Sbjct: 159 VDKDIFSFYLN-RDPGAQPGGELMLGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVGSS 217

Query: 109 VYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
           +      C+AI DTGTSLI+G  + + EL K IGAVPL  G   + C+ +  +P+V + L
Sbjct: 218 LTLCKGGCEAIVDTGTSLIVGQPEEVRELGKAIGAVPLIQGEYMIPCEKVPSLPDVTVTL 277

Query: 167 GGKNFTLTRTN 177
           GGK + L+  N
Sbjct: 278 GGKKYKLSSEN 288

Acid protease active in intracellular protein breakdown.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 5

>sp|O93428|CATD_CHIHA Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCSNCQAIA 118
           RN   E GGE++ GG D   + GD  Y  V+R+ YWQ  V+S+ +  + ++    C+AI 
Sbjct: 221 RNPDTEPGGELLLGGTDPKYYTGDFNYVNVTRQAYWQIRVDSMAVGDQLSLCTGGCEAIV 280

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           D+GTSLI GPS  +  L K IGA PL  G   V+CD +  +P +   +GG+ +TLT
Sbjct: 281 DSGTSLITGPSVEVKALQKAIGAFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLT 336

Acid protease active in intracellular protein breakdown.

Chionodraco hamatus (taxid: 36188)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
326433118	385	cathepsin D [Salpingoeca sp. ATCC 50818]	0.621	0.285	0.517	2e-28
307203870	374	Lysosomal aspartic protease [Harpegnatho	0.644	0.304	0.521	3e-28
170063951	387	lysosomal aspartic protease [Culex quinq	0.638	0.291	0.508	4e-27
391329068	384	PREDICTED: lysosomal aspartic protease-l	0.644	0.296	0.533	7e-27
427789779	391	Putative cathepsin d isoform 1 protein [	0.638	0.289	0.513	9e-27
241275826	345	aspartic protease, putative [Ixodes scap	0.638	0.327	0.504	1e-26
227018334	386	aspartic proteinase 1 [Chrysomela tremul	0.644	0.295	0.513	2e-26
315274244	387	cathepsin D2 [Ixodes ricinus]	0.638	0.291	0.504	3e-26
347451476	393	aspartate protease cathepsin D [Triatoma	0.638	0.287	0.473	3e-26
293230	387	aspartic protease [Aedes aegypti]	0.638	0.291	0.5	4e-26

>gi|326433118|gb|EGD78688.1| cathepsin D [Salpingoeca sp. ATCC 50818]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 77/114 (67%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADT 120
           R     +GGE+  GG D     G I + P++R GYWQF ++S+ +  + YCSNCQAIADT
Sbjct: 212 RVQGAPSGGELTLGGYDPKHMSGPIQWVPLTRDGYWQFAMDSLSVNGDSYCSNCQAIADT 271

Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           GTSL+ GP+  I +LNK IGA+P+A G   VDC  +  MPNVDI+L G+ FTLT
Sbjct: 272 GTSLLAGPTDAIKKLNKQIGAIPIAQGEYMVDCKKIPTMPNVDIVLNGQKFTLT 325

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|307203870|gb|EFN82801.1| Lysosomal aspartic protease [Harpegnathos saltator]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 83/115 (72%), Gaps = 1/115 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIAD 119
           R+   + GGE++ GG D D + G+ TY PVSRKGYWQF ++SI++  +  C S CQAIAD
Sbjct: 200 RDPDAKVGGEMLLGGSDSDHYEGEFTYVPVSRKGYWQFAMDSIQVHGHTLCASGCQAIAD 259

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           TGTSLI GP + +A +N LIGA  +  G A VDCD ++K+P +D+I+GGK F+L+
Sbjct: 260 TGTSLIAGPVEEVAVINSLIGATTIIAGEAIVDCDLIEKLPGIDVIIGGKMFSLS 314

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063951|ref|XP_001867326.1| lysosomal aspartic protease [Culex quinquefasciatus] gi|167881401|gb|EDS44784.1| lysosomal aspartic protease [Culex quinquefasciatus]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
           R+ S   GGEI+FGG D  K+ GD TY PV RK YWQF ++S+K+    +C+N C+AIAD
Sbjct: 213 RDPSAAEGGEIIFGGSDSAKYTGDFTYLPVDRKAYWQFKMDSVKVGDTEFCNNGCEAIAD 272

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           TGTSLI GP+  +  +NK IG  P+ NG   VDC  + K+P +  +LGGK F L
Sbjct: 273 TGTSLIAGPTSEVTAINKAIGGTPIINGEYMVDCSLIPKLPKIKFVLGGKEFEL 326

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391329068|ref|XP_003738999.1| PREDICTED: lysosomal aspartic protease-like [Metaseiulus occidentalis]

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 4/118 (3%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI---EKNVYCSN-CQA 116
           R+     G E++ GG+D     G+ITY PVSRKGYWQF ++S+KI    K   C+N CQA
Sbjct: 209 RDNDHPTGSELVIGGIDPKHHKGEITYIPVSRKGYWQFKMDSVKIGDVSKTTLCANGCQA 268

Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           IADTGTSLI GP+  +  LNK IGA P  NG   V+C+NL  MPN+   LGGK+F LT
Sbjct: 269 IADTGTSLIAGPTSEVKALNKAIGAAPFLNGEYLVNCNNLPTMPNITFTLGGKDFELT 326

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789779|gb|JAA60341.1| Putative cathepsin d isoform 1 protein [Rhipicephalus pulchellus]

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 2/115 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN-VYCS-NCQAIA 118
           RNASD  GGE++FGG+DK  + G+ITY PV+RKGYWQF ++ + +  N  +C+  C+AIA
Sbjct: 216 RNASDPQGGEVLFGGIDKAHYTGNITYVPVTRKGYWQFHMDGVTVGTNTTFCNGGCEAIA 275

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           DTGTSLI GPS+ I +LN  IGA P   G   V C ++ K+PN+   L G +F L
Sbjct: 276 DTGTSLIAGPSEEIQKLNLAIGAAPFTAGEYLVSCKSIPKLPNITFTLNGHDFQL 330

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241275826|ref|XP_002406708.1| aspartic protease, putative [Ixodes scapularis] gi|215496940|gb|EEC06580.1| aspartic protease, putative [Ixodes scapularis]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN-VYCSN-CQAIA 118
           RNASD  GGE++FGG+D+  ++G+I+Y PVS++GYWQ  ++  ++  N  +CS  C+AI 
Sbjct: 213 RNASDPAGGEVLFGGIDESHYIGNISYVPVSKRGYWQVHMDGTRVGNNGSFCSGGCEAIL 272

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           DTGTSLI GPS  I +LN LIGA P A+G   V C ++DK+P +   L GK+F L
Sbjct: 273 DTGTSLIAGPSDEIEKLNLLIGAAPFASGEYIVSCKSIDKLPKITFTLAGKDFVL 327

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|227018334|gb|ACP18833.1| aspartic proteinase 1 [Chrysomela tremula]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
           R+ + E GGEI+FGG D   + GD TY PV+RKGYWQ  ++   ++ N  C   CQAI D
Sbjct: 211 RDPNAEVGGEIVFGGSDPKYYTGDFTYLPVTRKGYWQIKMDKAVVDSNTLCDGGCQAIVD 270

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           TGTSLI GPS  I ++ K +GA  +  G   VDC+ L  MPN+D +LGGK FTLT
Sbjct: 271 TGTSLITGPSDEIEKIVKAVGATAITAGEYTVDCNKLSSMPNIDFVLGGKTFTLT 325

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315274244|gb|ADU03674.1| cathepsin D2 [Ixodes ricinus]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 80/115 (69%), Gaps = 2/115 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN-VYCSN-CQAIA 118
           RNASD  GGE++FGG+D+  + G+I+Y PVS++GYWQ  ++  ++  N  +CS  C+AI 
Sbjct: 212 RNASDPAGGEVLFGGIDESHYTGNISYVPVSKRGYWQVHMDGTRVGNNGSFCSGGCEAIL 271

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           DTGTSLI GPS  I +LN LIGA P A+G   V C ++DK+P +   L GK+F L
Sbjct: 272 DTGTSLIAGPSDEIEKLNLLIGAAPFASGEYIVSCKSIDKLPKITFTLAGKDFVL 326

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347451476|gb|AEO94539.1| aspartate protease cathepsin D [Triatoma infestans]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
           R+ +   GGEI+FGG D +K+VGD TY PV ++GYWQF ++ + +    +C   CQAIAD
Sbjct: 218 RDPAAAVGGEIIFGGSDPEKYVGDFTYVPVDKQGYWQFNMDKVIVNGKTFCKGGCQAIAD 277

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           TGTSLI GP++ +  LNKL+G  P+A G   + CD + K+P +D ++GG  F+L
Sbjct: 278 TGTSLIAGPTEDVIALNKLLGGTPIAGGEYMISCDLIPKLPKIDFVIGGNKFSL 331

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|293230|gb|AAA29350.1| aspartic protease [Aedes aegypti]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
           R+ S   GGEI+FGG D +K+ GD TY  V RK YWQF ++S+K+    +C+N C+AIAD
Sbjct: 213 RDPSAAEGGEIIFGGSDSNKYTGDFTYLSVDRKAYWQFKMDSVKVGDTEFCNNGCEAIAD 272

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           TGTSLI GP   +  +NK IG  P+ NG   VDC  + K+P +  +LGGK+F L
Sbjct: 273 TGTSLIAGPVSEVTAINKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDL 326

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
WB|WBGene00000217	444	asp-4 [Caenorhabditis elegans	0.638	0.254	0.491	1.4e-41
UNIPROTKB|P00795	345	CTSD "Cathepsin D" [Sus scrofa	0.723	0.371	0.396	5.8e-40
UNIPROTKB|O93428	396	ctsd "Cathepsin D" [Chionodrac	0.644	0.287	0.422	5.6e-39
UNIPROTKB|Q05744	398	CTSD "Cathepsin D" [Gallus gal	0.706	0.314	0.390	8.8e-39
FB|FBgn0029093	392	cathD "cathD" [Drosophila mela	0.638	0.288	0.421	2.3e-38
UNIPROTKB|P80209	390	CTSD "Cathepsin D" [Bos taurus	0.694	0.315	0.392	8.2e-38
FB|FBgn0053128	405	CG33128 [Drosophila melanogast	0.694	0.303	0.448	1.1e-37
UNIPROTKB|F1MMR6	412	CTSD "Cathepsin D" [Bos taurus	0.694	0.298	0.392	1.7e-37
UNIPROTKB|E2RJN2	396	CTSE "Uncharacterized protein"	0.638	0.285	0.453	2.3e-36
FB|FBgn0038507	395	CG5863 [Drosophila melanogaste	0.638	0.286	0.433	2.7e-36

WB|WBGene00000217 asp-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 289 (106.8 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
 Identities = 56/114 (49%), Positives = 72/114 (63%)

Query:    61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
             RN   E GGEI FGG+D  ++V  ITY PV+RKGYWQF ++ +     + CSN CQAIAD
Sbjct:   239 RNPDSEIGGEITFGGIDSRRYVEPITYVPVTRKGYWQFKMDKVVGSGVLGCSNGCQAIAD 298

Query:   120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
             TGTSLI GP   I  +   IGA PL  G   + CD +  +P V  ++GG+ F+L
Sbjct:   299 TGTSLIAGPKAQIEAIQNFIGAEPLIKGEYMISCDKVPTLPPVSFVIGGQEFSL 352

GO:0006508 "proteolysis" evidence=IEA;IMP

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;ISS

GO:0008219 "cell death" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IGI;IMP

GO:0005764 "lysosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P00795 CTSD "Cathepsin D" [Sus scrofa (taxid:9823)]

 Score = 264 (98.0 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 52/131 (39%), Positives = 78/131 (59%)

Query:    49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN 108
             VDKD F  + + R+   + GGE+M GG+D   + G + Y  V+RK YWQ  +  + +  +
Sbjct:   159 VDKDIFSFYLN-RDPGAQPGGELMLGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVGSS 217

Query:   109 V-YCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
             +  C   C+AI DTGTSLI+G  + + EL K IGAVPL  G   + C+ +  +P+V + L
Sbjct:   218 LTLCKGGCEAIVDTGTSLIVGQPEEVRELGKAIGAVPLIQGEYMIPCEKVPSLPDVTVTL 277

Query:   167 GGKNFTLTRTN 177
             GGK + L+  N
Sbjct:   278 GGKKYKLSSEN 288

GO:0005615 "extracellular space" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|O93428 ctsd "Cathepsin D" [Chionodraco hamatus (taxid:36188)]

 Score = 250 (93.1 bits), Expect = 5.6e-39, Sum P(2) = 5.6e-39
 Identities = 49/116 (42%), Positives = 69/116 (59%)

Query:    61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAIA 118
             RN   E GGE++ GG D   + GD  Y  V+R+ YWQ  V+S+ +   +  C+  C+AI 
Sbjct:   221 RNPDTEPGGELLLGGTDPKYYTGDFNYVNVTRQAYWQIRVDSMAVGDQLSLCTGGCEAIV 280

Query:   119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
             D+GTSLI GPS  +  L K IGA PL  G   V+CD +  +P +   +GG+ +TLT
Sbjct:   281 DSGTSLITGPSVEVKALQKAIGAFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLT 336

GO:0004190 "aspartic-type endopeptidase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IDA

UNIPROTKB|Q05744 CTSD "Cathepsin D" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 8.8e-39, Sum P(2) = 8.8e-39
 Identities = 50/128 (39%), Positives = 78/128 (60%)

Query:    49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN 108
             ++K+ F  + + R+ + + GGE++ GG D   + GD ++  V+RK YWQ  ++S+ +   
Sbjct:   212 IEKNIFSFYLN-RDPTAQPGGELLLGGTDPKYYSGDFSWVNVTRKAYWQVHMDSVDVANG 270

Query:   109 V-YCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
             +  C   C+AI DTGTSLI GP+K + EL   IGA PL  G   + CD +  +P V ++L
Sbjct:   271 LTLCKGGCEAIVDTGTSLITGPTKEVKELQTAIGAKPLIKGQYVISCDKISSLPVVTLML 330

Query:   167 GGKNFTLT 174
             GGK + LT
Sbjct:   331 GGKPYQLT 338

GO:0006508 "proteolysis" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

FB|FBgn0029093 cathD "cathD" [Drosophila melanogaster (taxid:7227)]

 Score = 253 (94.1 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
 Identities = 48/114 (42%), Positives = 67/114 (58%)

Query:    61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
             R+ +   GGEI+FGG D + + G+ TY PV+RK YWQ  +++  I     C   CQ IAD
Sbjct:   218 RDPASPEGGEIIFGGSDPNHYTGEFTYLPVTRKAYWQIKMDAASIGDLQLCKGGCQVIAD 277

Query:   120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
             TGTSLI  P +    +N+ IG  P+  G   V CD + ++P +  +LGGK F L
Sbjct:   278 TGTSLIAAPLEEATSINQKIGGTPIIGGQYVVSCDLIPQLPVIKFVLGGKTFEL 331

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS;NAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0005764 "lysosome" evidence=IDA

UNIPROTKB|P80209 CTSD "Cathepsin D" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
 Identities = 51/130 (39%), Positives = 78/130 (60%)

Query:    49 VDKDKFVGHSHF--RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE 106
             VDK+ F   S F  R+   + GGE+M GG D   + G + +  V+R+ YWQ  ++ + + 
Sbjct:   202 VDKNVF---SFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFHNVTRQAYWQIHMDQLDVG 258

Query:   107 KNV-YCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDI 164
              ++  C   C+AI DTGTSLI+GP + + EL K IGAVPL  G   + C+ +  +P V +
Sbjct:   259 SSLTVCKGGCEAIVDTGTSLIVGPVEEVRELQKAIGAVPLIQGEYMIPCEKVSSLPEVTV 318

Query:   165 ILGGKNFTLT 174
              LGGK++ L+
Sbjct:   319 KLGGKDYALS 328

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

FB|FBgn0053128 CG33128 [Drosophila melanogaster (taxid:7227)]

 Score = 272 (100.8 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 56/125 (44%), Positives = 76/125 (60%)

Query:    49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN 108
             +D+  F G    RN S  +GG++  GG D++   G++TY+PV+++GYWQF V +I     
Sbjct:   227 IDEPVF-GFYLARNGSAVDGGQLTLGGTDQNLIAGEMTYTPVTQQGYWQFAVNNITWNGT 285

Query:   109 VYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
             V  S CQAIADTGTSLI  PS    +LN LIG VP+  G   V C  +  +P + I +GG
Sbjct:   286 VISSGCQAIADTGTSLIAAPSAAYIQLNNLIGGVPI-QGDYYVPCSTVSSLPVLTINIGG 344

Query:   169 KNFTL 173
              NF L
Sbjct:   345 TNFYL 349

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1MMR6 CTSD "Cathepsin D" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
 Identities = 51/130 (39%), Positives = 78/130 (60%)

Query:    49 VDKDKFVGHSHF--RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE 106
             VDK+ F   S F  R+   + GGE+M GG D   + G + +  V+R+ YWQ  ++ + + 
Sbjct:   224 VDKNVF---SFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFHNVTRQAYWQIHMDQLDVG 280

Query:   107 KNV-YCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDI 164
              ++  C   C+AI DTGTSLI+GP + + EL K IGAVPL  G   + C+ +  +P V +
Sbjct:   281 SSLTVCKGGCEAIVDTGTSLIVGPVEEVRELQKAIGAVPLIQGEYMIPCEKVSSLPQVTV 340

Query:   165 ILGGKNFTLT 174
              LGGK++ L+
Sbjct:   341 KLGGKDYALS 350

GO:0031012 "extracellular matrix" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2RJN2 CTSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 54/119 (45%), Positives = 78/119 (65%)

Query:    63 ASDENGG---EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAI 117
             +SD  GG   E++FGG D   F G++ + PV+++GYWQ  +++I++   V +CS  CQAI
Sbjct:   220 SSDPEGGTGSELIFGGYDHSHFSGNLNWVPVTKQGYWQIALDAIQVGGTVMFCSEGCQAI 279

Query:   118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRT 176
              DTGTSLI GPS  I +L   IGA P+ +G   V+C NL+ MP+V  I+ G ++TL  T
Sbjct:   280 VDTGTSLITGPSDEIKQLQNAIGAEPM-DGEYGVECANLNVMPDVTFIINGVSYTLQPT 337

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0038507 CG5863 [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 49/113 (43%), Positives = 72/113 (63%)

Query:    61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADT 120
             RN S+  GGE++FGGVDK KF G +TY P++  GYWQF ++ I++       N QAIADT
Sbjct:   226 RNGSERKGGELLFGGVDKTKFSGSLTYVPLTHAGYWQFPLDVIEVAGTRINQNRQAIADT 285

Query:   121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
             GTSL+  P +    +N L+G +P +N    ++C  +D +P +  I+GG+ F L
Sbjct:   286 GTSLLAAPPREYLIINSLLGGLPTSNNEYLLNCSEIDSLPEIVFIIGGQRFGL 338

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	2e-41
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	5e-33
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	1e-31
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	5e-30
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	2e-29
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	3e-29
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	1e-28
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	4e-25
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	1e-24
cd05487	326	cd05487, renin_like, Renin stimulates production o	4e-21
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	1e-20
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	2e-18
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	4e-18
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	4e-17
cd05487	326	cd05487, renin_like, Renin stimulates production o	4e-17
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	1e-16
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	2e-15
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	2e-14
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	3e-14
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	4e-14
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	6e-13
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	2e-12
cd06097	278	cd06097, Aspergillopepsin_like, Aspergillopepsin_l	6e-12
cd05470	109	cd05470, pepsin_retropepsin_like, Cellular and ret	2e-11
cd05474	295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	9e-09
cd05474	295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	4e-08
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	5e-08
cd05473	364	cd05473, beta_secretase_like, Beta-secretase, aspa	8e-07
cd06097	278	cd06097, Aspergillopepsin_like, Aspergillopepsin_l	2e-06
cd05476	265	cd05476, pepsin_A_like_plant, Chroloplast Nucleoid	3e-06
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	5e-06
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	9e-06
cd05472	299	cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin	3e-04
cd05473	364	cd05473, beta_secretase_like, Beta-secretase, aspa	0.002
PLN03146	431	PLN03146, PLN03146, aspartyl protease family prote	0.002

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  141 bits (356), Expect = 2e-41
 Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 1/115 (0%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIAD 119
           R+ S + GGE++ GG D   + G+ TY PV+RKGYWQF ++S+ + +  +CS  CQAIAD
Sbjct: 157 RDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIAD 216

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           TGTSLI GP   I +LN  IGA P+  G   V+C  +  +P++  +LGGK+F+LT
Sbjct: 217 TGTSLIAGPVDEIEKLNNAIGAKPIIGGEYMVNCSAIPSLPDITFVLGGKSFSLT 271

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  119 bits (299), Expect = 5e-33
 Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 15/117 (12%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV--YCSN-CQAI 117
           RN  +E GGE++FGGVD   F G+ TY PV+RKGYWQF +  + I      +C+  C AI
Sbjct: 155 RNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAI 214

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           AD+GTSL+ GP+ ++ ++N            + VDC++L  MPNV   +GGK F LT
Sbjct: 215 ADSGTSLLAGPTTIVTQIN------------SAVDCNSLSSMPNVSFTIGGKTFELT 259

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score =  115 bits (290), Expect = 1e-31
 Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 5/128 (3%)

Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
           +D   F   S + N+ D  GGEI+FGGVD  K+ G +T+ PV+ +GYWQ  ++SI +   
Sbjct: 137 IDSPAF---SVYLNSDDAGGGEIIFGGVDPSKYTGSLTWVPVTSQGYWQITLDSITVGGS 193

Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
             +CS+ CQAI DTGTSL+ GP+ +++++ K +GA     G   VDCD++  +P+V   +
Sbjct: 194 ATFCSSGCQAILDTGTSLLYGPTSIVSKIAKAVGASLSEYGGYVVDCDSISSLPDVTFFI 253

Query: 167 GGKNFTLT 174
           GG   T+ 
Sbjct: 254 GGAKITVP 261

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score =  111 bits (279), Expect = 5e-30
 Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN 108
           V +D F   S + +++ + G  + FGG+D   + G + + PV+ + YWQ  V+S+ I   
Sbjct: 143 VSQDLF---SVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQ 199

Query: 109 VY--CSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
           V      CQAI DTGTSL++GPS  IA +   IGA    NG   V+C ++  MP+V   +
Sbjct: 200 VVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQNGEMVVNCSSISSMPDVVFTI 259

Query: 167 GGKNFTLT 174
            G  + L 
Sbjct: 260 NGVQYPLP 267

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  109 bits (275), Expect = 2e-29
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YC-SNCQAIA 118
           R+   + GGE+M GG D   + GD+ Y  V+RK YWQ  ++ + +   +  C   C+AI 
Sbjct: 152 RDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIV 211

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSLI GP + +  L K IGAVPL  G   +DC+ +  +P +   LGGK + LT
Sbjct: 212 DTGTSLITGPVEEVRALQKAIGAVPLIQGEYMIDCEKIPTLPVISFSLGGKVYPLT 267

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score =  109 bits (273), Expect = 3e-29
 Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 4/127 (3%)

Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
           +D+  F   S +  +S+E+GGE  FGG+D+ +F G IT+ PV RK YW+  +E I + ++
Sbjct: 143 LDEPVF---SFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDE 199

Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
            +   N  A  DTGTSLI  PS +   LN  IGA    NG   VDC  +D +P++     
Sbjct: 200 ELELENTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSWNGQYTVDCSKVDSLPDLTFNFD 259

Query: 168 GKNFTLT 174
           G NFTL 
Sbjct: 260 GYNFTLG 266

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score =  107 bits (269), Expect = 1e-28
 Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 3/116 (2%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAIA 118
           RN +  +GGE++FGG D  +F G + + PV+ +GYWQ  +++I++   V +CS+ CQAI 
Sbjct: 144 RNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIV 203

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSLI GPS  I +L   IGA    +G   VDC  L  MP+V   + G  ++L+
Sbjct: 204 DTGTSLITGPSGDIKQLQNYIGATA-TDGEYGVDCSTLSLMPSVTFTINGIPYSLS 258

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score = 97.5 bits (243), Expect = 4e-25
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPV--SRKGYWQFGVESIKI---EKNVYCSNCQ 115
           R+    NGGE+ FGG+D  K+ GD+TY+PV  +  GYWQ  ++ I +             
Sbjct: 145 RDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGG 204

Query: 116 AIADTGTSLIIGPSKVIAELNKLIGA-VPLANGPAKVDCDNLDKMPNVDI----ILG 167
           AI D+GTSLI  PS V   + K +GA V  ++G   VDC   D +P++      ILG
Sbjct: 205 AIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGGYGVDCSPCDTLPDITFTFLWILG 261

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score = 96.9 bits (241), Expect = 1e-24
 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCSN-CQAIA 118
               + GGE++FGGVD + + G I ++PV+ + YWQ G++  +I  +   +CS  CQAI 
Sbjct: 147 GQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIV 206

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           DTGTSL+  P +V++ L + IGA     G   V+C+N+  +P +   + G +F L
Sbjct: 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYVVNCNNIQNLPTLTFTINGVSFPL 261

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score = 87.5 bits (217), Expect = 4e-21
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 21/176 (11%)

Query: 7   AQYYGTISLGTPPQEFKVI---FDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNA 63
           A++ G + +G P Q    +   FD       I SQ          V K+      + R++
Sbjct: 111 AKFDGVLGMGYPKQAIGGVTPVFDN------IMSQG---------VLKEDVFSVYYSRDS 155

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAIADTG 121
           S   GGEI+ GG D   + GD  Y   S+ G+WQ  ++ + +  +   C + C A+ DTG
Sbjct: 156 SHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTG 215

Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
            S I GP+  I++L + +GA         V C+ +  +P++   LGGK +TL+ ++
Sbjct: 216 ASFISGPTSSISKLMEALGAKERLGDYV-VKCNEVPTLPDISFHLGGKEYTLSSSD 270

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score = 86.4 bits (214), Expect = 1e-20
 Identities = 31/43 (72%), Positives = 36/43 (83%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIAC 47
            AQYYG I +GTPPQ F V+FDTGSSNLW+PS HCS+L+IAC
Sbjct: 3  MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC 45

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 31/41 (75%), Positives = 36/41 (87%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIAC 47
          AQYYG I++GTPPQ FKV+FDTGSSNLW+PS+ CS  NIAC
Sbjct: 10 AQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC 50

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score = 79.4 bits (196), Expect = 4e-18
 Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 3/48 (6%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
           +YYGTIS+GTPPQ+F VIFDTGSSNLW+PS +CS    ACS + ++F
Sbjct: 9  MEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQ--ACS-NHNRF 53

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 28/41 (68%), Positives = 33/41 (80%), Gaps = 1/41 (2%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIAC 47
          AQY+G I +GTPPQ+F VIFDTGSSNLW+PS  C   +IAC
Sbjct: 9  AQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKC-YFSIAC 48

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 38/70 (54%), Positives = 44/70 (62%), Gaps = 13/70 (18%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD- 65
           QYYG I +GTPPQ FKV+FDTGSSNLW+PS  CS L  AC       V H+ + +ASD 
Sbjct: 7  TQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC-------VTHNLY-DASDS 58

Query: 66 ----ENGGEI 71
              ENG E 
Sbjct: 59 STYKENGTEF 68

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 8/86 (9%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--DKFVGHSHFRNAS 64
          AQY+  I+LGTPPQ+FKVI DTGSSNLW+PS  C   +IAC +    D     ++  N +
Sbjct: 9  AQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG--SIACFLHSKYDSSASSTYKANGT 66

Query: 65 D---ENGGEIMFGGVDKDKF-VGDIT 86
          +   + G   + G V +D   +GD+T
Sbjct: 67 EFKIQYGSGSLEGFVSQDTLSIGDLT 92

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 26/41 (63%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          +YYGTIS+GTPPQ+F V+FDTGSS+LW+PS +C+    AC 
Sbjct: 1  EYYGTISIGTPPQKFTVVFDTGSSDLWVPSVYCTSSY-ACK 40

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 8   QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
           QY+G I +GTPP+ F V+FDTGSSNLWIPS+ C 
Sbjct: 120 QYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK 153

Length = 482

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 9  YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          YYG I++GTPPQ+F VIFDTGSS LW+PS +C+  +    
Sbjct: 1  YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH 40

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 15/104 (14%)

Query: 69  GEIMFGGVDKDKFV--GD-ITYSPVSRKGYWQFGVESIKIE-KNV-YCSN-CQAIADTGT 122
           G I FG  D  K+   G  I + PV    YW+  V  I I+ K++ +C   C+A  DTG+
Sbjct: 278 GSISFGSADP-KYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGS 336

Query: 123 SLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
           SLI GPS VI   N L+  +PL       DC N D +P +  +L
Sbjct: 337 SLITGPSSVI---NPLLEKIPLEE-----DCSNKDSLPRISFVL 372

Length = 482

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 9  YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
          Y+G IS+GTPPQ F VIFDTGSSNLW+PS +C+
Sbjct: 1  YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT 33

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 24/34 (70%), Positives = 27/34 (79%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
            YYG IS+GTPPQ F V+FDTGSSNLW+PS  C
Sbjct: 2  MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC 35

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 73  FGGVDKDKFVGDITYSPVSR-KGYWQFGVESIKI--EKNVYCSNCQAIADTGTSLIIGPS 129
           FG +D+ K+ G+I+++PV    G+WQF   S  +  +     S   AIADTGT+LI+ P 
Sbjct: 155 FGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPD 214

Query: 130 KV 131
            +
Sbjct: 215 AI 216

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 278

>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 9/55 (16%)

Query: 11 GTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD 65
            I +GTPPQ F V+ DTGSSNLW+PS  C  L I           HS + + S 
Sbjct: 1  IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS---------HSSYDDPSA 46

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site ASP residues with each N- and C-terminal lobe contributing one residue. While the fungal and mammalian pepsins are bilobal proteins, retropepsins function as dimers and the monomer resembles structure of the N- or C-terminal domains of eukaryotic enzyme. The active site motif (Asp-Thr/Ser-Gly-Ser) is conserved between the retroviral and eukaryotic proteases and between the N-and C-terminal of eukaryotic pepsin-like proteases. The retropepsin-like family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements; as well as eukaryotic DNA-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. Retropepsin is synthesized as part of the POL polyprotein that contains an aspartyl-protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A) and A2 (retropepsin family). Length = 109

>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 9  YYGTISLGTPPQEFKVIFDTGSSNLWIP 36
          Y   +S+GTPPQ+  V+ DTGSS+LW+P
Sbjct: 3  YSAELSVGTPPQKVTVLLDTGSSDLWVP 30

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295

>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 69  GEIMFGGVDKDKFVGDITYSPVSRKGYW-----------QFGVESIKIEKNVYCSNCQAI 117
           G I+FGGVD  K+ GD+   P+                    V        +   N  A+
Sbjct: 123 GSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPAL 182

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAK-VDCDNLDKMPNVDIILGGKNFT 172
            D+GT+L   PS ++  + K +GA   ++     VDCD  D   ++    GG   +
Sbjct: 183 LDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKDDG-SLTFNFGGATIS 237

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 17/88 (19%)

Query: 9   YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENG 68
           +YG   +G   Q+F +IFDTGS+NLW+PS+ C   +I CS+         +  ++S    
Sbjct: 139 FYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD--SIGCSI--------KNLYDSSKSKS 188

Query: 69  GEIMFGGVDKDKFVGDITYSPVSRKGYW 96
            E       KD    DITY   + KG++
Sbjct: 189 YE-------KDGTKVDITYGSGTVKGFF 209

Length = 450

>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 56  GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN------- 108
           G     +AS   GG ++ GG+D   + GDI Y+P+  + Y++  V  +K+E         
Sbjct: 148 GLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYE--VIILKLEVGGQSLNLD 205

Query: 109 --VYCSNCQAIADTGTSLIIGPSKV 131
              Y  + +AI D+GT+ +  P KV
Sbjct: 206 CKEYNYD-KAIVDSGTTNLRLPVKV 229

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 364

>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 9  YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIA 46
          Y   + +GTPPQ   +  DTGSS+LW+ S         
Sbjct: 1  YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG 38

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 278

>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIP 36
          +Y  T+S+GTPPQ F +I DTGS   W  
Sbjct: 1  EYLVTLSIGTPPQPFSLIVDTGSDLTWTQ 29

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 9   YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
            YG   LG   Q+F  IFDTGS+NLW+PS  C+
Sbjct: 140 SYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT 172

Length = 453

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)

Query: 65  DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSL 124
           D + G +  GG+++  + G+ITY  ++   YWQ  ++ +   K         I D+GT+ 
Sbjct: 285 DVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM-QKANVIVDSGTTT 342

Query: 125 IIGPSKVIAELNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
           I  PS+ + +    +  + +   P  V  CDN  +MP ++       +TL
Sbjct: 343 ITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-KEMPTLEFKSANNTYTL 391

Length = 450

>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
          +Y  T+ LGTP ++  VI DTGS   W+  Q C
Sbjct: 1  EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC 33

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299

>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 9  YYGTISLGTPPQEFKVIFDTGSSN 32
          YY  + +GTPPQ+  ++ DTGSSN
Sbjct: 4  YYIEMLIGTPPQKLNILVDTGSSN 27

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 364

>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 3   SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWI---PSQHC 40
            S   +Y   IS+GTPP     I DTGS  +W    P   C
Sbjct: 79  ISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDC 119

Length = 431

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	100.0
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	100.0
cd05487	326	renin_like Renin stimulates production of angioten	100.0
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	100.0
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	100.0
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	100.0
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	100.0
cd05477	318	gastricsin Gastricsins, asparate proteases produce	100.0
PTZ00165	482	aspartyl protease; Provisional	100.0
PTZ00147	453	plasmepsin-1; Provisional	100.0
PTZ00013	450	plasmepsin 4 (PM4); Provisional	100.0
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	100.0
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	100.0
KOG1339|consensus	398		100.0
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	100.0
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	99.97
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	99.97
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	99.96
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	99.96
PLN03146	431	aspartyl protease family protein; Provisional	99.95
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	99.95
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	99.95
cd05489	362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	99.9
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	99.24
PF14541	161	TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D	99.07
PF14543	164	TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A	98.83
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	97.01
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	95.71
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	95.04
PF13975	72	gag-asp_proteas: gag-polyprotein putative aspartyl	94.6
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	94.54
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	94.46
PF00077	100	RVP: Retroviral aspartyl protease The Prosite entr	93.23
PF13650	90	Asp_protease_2: Aspartyl protease	93.2
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	92.5
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	92.39
PF13975	72	gag-asp_proteas: gag-polyprotein putative aspartyl	92.37
PF13650	90	Asp_protease_2: Aspartyl protease	91.63
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	89.73
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	89.08
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	88.64
PF12384	177	Peptidase_A2B: Ty3 transposon peptidase; InterPro:	87.16
cd05482	87	HIV_retropepsin_like Retropepsins, pepsin-like asp	86.98
TIGR03698	107	clan_AA_DTGF clan AA aspartic protease, AF_0612 fa	83.72
PF09668	124	Asp_protease: Aspartyl protease; InterPro: IPR0191	83.25
COG3577	215	Predicted aspartyl protease [General function pred	82.51
PF00077	100	RVP: Retroviral aspartyl protease The Prosite entr	81.41
cd05481	93	retropepsin_like_LTR_1 Retropepsins_like_LTR; peps	80.03

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=100.00  E-value=5.1e-39  Score=254.66  Aligned_cols=175  Identities=43%  Similarity=0.837  Sum_probs=151.0

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||++.|++||||+++||+|..|.  ...|..+.                             
T Consensus         3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~--~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~   80 (317)
T cd05478           3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS--SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI   80 (317)
T ss_pred             cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC--cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence            78999999999999999999999999999999999999997  34564433                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCCCCc
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDENGG   69 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~~~G   69 (177)
                         |                            ++||                            +++|   +.......|
T Consensus        81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g  160 (317)
T cd05478          81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGS  160 (317)
T ss_pred             EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCe
Confidence               1                            1344                            2444   222333579


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG  147 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g  147 (177)
                      .|+|||+|+++|.|++.|+|+....+|.|.+++++|+++.+.  .+..+++||||+++++|++.+++|++++++.....+
T Consensus       161 ~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~~~  240 (317)
T cd05478         161 VVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQNG  240 (317)
T ss_pred             EEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHHhCCccccCC
Confidence            999999999999999999999988999999999999999876  567899999999999999999999999988755678


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+....+|.|+|+|+|++++|||++
T Consensus       241 ~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~  270 (317)
T cd05478         241 EMVVNCSSISSMPDVVFTINGVQYPLPPSA  270 (317)
T ss_pred             cEEeCCcCcccCCcEEEEECCEEEEECHHH
Confidence            899999987789999999999999999864

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=100.00  E-value=4.3e-39  Score=255.86  Aligned_cols=175  Identities=47%  Similarity=0.926  Sum_probs=147.5

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-------------------------------
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-------------------------------   51 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-------------------------------   51 (177)
                      |+.|.+|+++|+||||||++.|++||||+++||+|..|......|..+.                               
T Consensus         1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~   80 (325)
T cd05490           1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS   80 (325)
T ss_pred             CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence            7899999999999999999999999999999999999974334564433                               


Q ss_pred             -C----------------------------cCCC----------------------------cccc---cc--CCCCCCc
Q psy3212          52 -D----------------------------KFVG----------------------------HSHF---RN--ASDENGG   69 (177)
Q Consensus        52 -D----------------------------~fdG----------------------------~~~F---~~--~~~~~~G   69 (177)
                       |                            .+||                            +++|   +.  ......|
T Consensus        81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G  160 (325)
T cd05490          81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG  160 (325)
T ss_pred             eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence             1                            1233                            2445   21  1123479


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG  147 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g  147 (177)
                      +|+|||+|+++|.|++.|+|+.+..+|.|++++|+|++....  ....+++||||+++++|++++++|.+++++.....+
T Consensus       161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~~  240 (325)
T cd05490         161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQG  240 (325)
T ss_pred             EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCHHHHHHHHHHhCCccccCC
Confidence            999999999999999999999988999999999999987543  567899999999999999999999999987755578


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+....+|+|+|+|+|++++|+|+|
T Consensus       241 ~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~  270 (325)
T cd05490         241 EYMIDCEKIPTLPVISFSLGGKVYPLTGED  270 (325)
T ss_pred             CEEecccccccCCCEEEEECCEEEEEChHH
Confidence            899999987789999999999999999874

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=100.00  E-value=7.3e-39  Score=254.69  Aligned_cols=176  Identities=41%  Similarity=0.824  Sum_probs=150.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|..|+++|+||||+|+++|++||||+++||++..|......|..+.                             
T Consensus         1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~   80 (326)
T cd05487           1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF   80 (326)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence            789999999999999999999999999999999999999874334565433                             


Q ss_pred             ---C---------------------------cCCC----------------------------cccc---ccC--CCCCC
Q psy3212          52 ---D---------------------------KFVG----------------------------HSHF---RNA--SDENG   68 (177)
Q Consensus        52 ---D---------------------------~fdG----------------------------~~~F---~~~--~~~~~   68 (177)
                         |                           .+||                            +++|   +..  .....
T Consensus        81 ~~~D~v~~g~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~  160 (326)
T cd05487          81 LSQDIVTVGGIPVTQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLG  160 (326)
T ss_pred             EeeeEEEECCEEeeEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCC
Confidence               1                           1234                            3445   221  12457


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLAN  146 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~  146 (177)
                      |.|+|||+|+++|.|++.|+|+.+..+|.|.+++++++++.+.  .+..+++||||+++++|++++++|++++++... .
T Consensus       161 G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-~  239 (326)
T cd05487         161 GEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFISGPTSSISKLMEALGAKER-L  239 (326)
T ss_pred             cEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc-C
Confidence            9999999999999999999999988999999999999999775  567899999999999999999999999988743 6


Q ss_pred             CCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         147 GPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       147 g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +.|.+||+....+|.|+|+|+|++++|++++
T Consensus       240 ~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~  270 (326)
T cd05487         240 GDYVVKCNEVPTLPDISFHLGGKEYTLSSSD  270 (326)
T ss_pred             CCEEEeccccCCCCCEEEEECCEEEEeCHHH
Confidence            7899999988889999999999999999864

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=100.00  E-value=8.4e-39  Score=253.75  Aligned_cols=175  Identities=47%  Similarity=0.812  Sum_probs=151.2

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|.+|+++|+||||+|++.|++||||+++||+|..|.  +..|..+.                             
T Consensus         3 l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~--~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G~   80 (320)
T cd05488           3 LTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG--SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEGF   80 (320)
T ss_pred             ccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC--CcccCCcceECCCCCcceeeCCCEEEEEECCceEEEE
Confidence            68999999999999999999999999999999999999997  34564332                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCCCCc
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDENGG   69 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~~~G   69 (177)
                         |                            .+||                            +++|   +.......|
T Consensus        81 ~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G  160 (320)
T cd05488          81 VSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGG  160 (320)
T ss_pred             EEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCc
Confidence               1                            1233                            2345   222235689


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP  148 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~  148 (177)
                      .|+|||+|++++.|++.|+|+....+|.|.++++++|++.+. .+..+++||||+++++|++++++|.+++++.....+.
T Consensus       161 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~  240 (320)
T cd05488         161 EATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSWNGQ  240 (320)
T ss_pred             EEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCCHHHHHHHHHHhCCccccCCc
Confidence            999999999999999999999988899999999999998877 7788999999999999999999999999887556788


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |.+||+....+|+|+|+|+|++++|||++
T Consensus       241 ~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  269 (320)
T cd05488         241 YTVDCSKVDSLPDLTFNFDGYNFTLGPFD  269 (320)
T ss_pred             EEeeccccccCCCEEEEECCEEEEECHHH
Confidence            99999987789999999999999999874

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=100.00  E-value=3.5e-38  Score=251.07  Aligned_cols=177  Identities=51%  Similarity=1.000  Sum_probs=150.1

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|.+|+++|+||||+|++.|++||||+++||+|..|......|..+.                             
T Consensus         4 ~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~G~   83 (329)
T cd05485           4 LSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLSGF   83 (329)
T ss_pred             ceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEEEE
Confidence            689999999999999999999999999999999999999874333454322                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---cc--CCCCC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RN--ASDEN   67 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~--~~~~~   67 (177)
                         |                            +++|                            +++|   +.  .....
T Consensus        84 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~  163 (329)
T cd05485          84 LSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKE  163 (329)
T ss_pred             EecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCC
Confidence               1                            1233                            2344   11  11235


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCC
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLAN  146 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~  146 (177)
                      .|.|+|||+|+++|.|++.|+|+.+..+|.|.+++++++++.+. .+..+++||||+++++|++++++|.+++++.....
T Consensus       164 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~  243 (329)
T cd05485         164 GGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPIIG  243 (329)
T ss_pred             CcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHHHHHHHHHHhCCccccC
Confidence            79999999999999999999999988999999999999999887 77789999999999999999999999998774446


Q ss_pred             CCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         147 GPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       147 g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +.|.++|+..+++|+|+|+|+|++++|+|++
T Consensus       244 ~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~  274 (329)
T cd05485         244 GEYMVNCSAIPSLPDITFVLGGKSFSLTGKD  274 (329)
T ss_pred             CcEEEeccccccCCcEEEEECCEEeEEChHH
Confidence            7899999987789999999999999999874

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=100.00  E-value=9.3e-38  Score=247.36  Aligned_cols=166  Identities=46%  Similarity=0.907  Sum_probs=140.5

Q ss_pred             EEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------C----
Q psy3212           9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------D----   52 (177)
Q Consensus         9 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------D----   52 (177)
                      |+++|+||||||+++|++||||+++||+|..|.  ...|..+.                                |    
T Consensus         1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~i   78 (316)
T cd05486           1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT--SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTV   78 (316)
T ss_pred             CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC--CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEE
Confidence            899999999999999999999999999999997  34565433                                1    


Q ss_pred             ------------------------cCCC----------------------------cccc---cc--CCCCCCcEEEEcc
Q psy3212          53 ------------------------KFVG----------------------------HSHF---RN--ASDENGGEIMFGG   75 (177)
Q Consensus        53 ------------------------~fdG----------------------------~~~F---~~--~~~~~~G~l~fGg   75 (177)
                                              .+||                            +++|   +.  ......|+|+|||
T Consensus        79 g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg  158 (316)
T cd05486          79 EGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGG  158 (316)
T ss_pred             CCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcc
Confidence                                    1233                            2445   21  1223579999999


Q ss_pred             cCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCCEEEcC
Q psy3212          76 VDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDC  153 (177)
Q Consensus        76 ~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C  153 (177)
                      +|+++|.|++.|+|+.+..+|.|.+++|+|+++.+.  ....+++||||+++++|++++++|.+.+++.. ..+.|.++|
T Consensus       159 ~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-~~~~~~~~C  237 (316)
T cd05486         159 FDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATA-TDGEYGVDC  237 (316)
T ss_pred             cCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcc-cCCcEEEec
Confidence            999999999999999998999999999999998764  56789999999999999999999999998763 357799999


Q ss_pred             CCCCCCccEEEEECCEEEEeccCC
Q psy3212         154 DNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       154 ~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +....+|+|+|+|+|++++|+|++
T Consensus       238 ~~~~~~p~i~f~f~g~~~~l~~~~  261 (316)
T cd05486         238 STLSLMPSVTFTINGIPYSLSPQA  261 (316)
T ss_pred             cccccCCCEEEEECCEEEEeCHHH
Confidence            987789999999999999999864

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=100.00  E-value=2.8e-37  Score=244.78  Aligned_cols=164  Identities=51%  Similarity=0.993  Sum_probs=137.2

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|.+|+++|+||||||+++|++||||+++||+|..|.. ...|..+.                             
T Consensus         3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~   81 (317)
T cd06098           3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISGF   81 (317)
T ss_pred             ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC-CccccccCcCCcccCCCcccCCCEEEEEcCCceEEEE
Confidence            689999999999999999999999999999999999999851 12454332                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---cc--CCCCC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RN--ASDEN   67 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~--~~~~~   67 (177)
                         |                            ++||                            +++|   +.  .....
T Consensus        82 ~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~  161 (317)
T cd06098          82 FSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEE  161 (317)
T ss_pred             EEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCC
Confidence               1                            2344                            2345   21  12245


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      .|+|+|||+|+++|+|++.|+|+....+|.+.+++++|+++.+.   ....+++||||+++++|++++++|.        
T Consensus       162 ~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~--------  233 (317)
T cd06098         162 GGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN--------  233 (317)
T ss_pred             CcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh--------
Confidence            79999999999999999999999988899999999999998653   5678999999999999999887764        


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                          |.++|+..+++|+|+|+|+|++++|+|++
T Consensus       234 ----~~~~C~~~~~~P~i~f~f~g~~~~l~~~~  262 (317)
T cd06098         234 ----SAVDCNSLSSMPNVSFTIGGKTFELTPEQ  262 (317)
T ss_pred             ----ccCCccccccCCcEEEEECCEEEEEChHH
Confidence                56899987789999999999999999874

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=100.00  E-value=5.2e-37  Score=243.27  Aligned_cols=170  Identities=42%  Similarity=0.847  Sum_probs=145.2

Q ss_pred             CceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------C-
Q psy3212           6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------D-   52 (177)
Q Consensus         6 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------D-   52 (177)
                      |.+|+++|+||||||++.|++||||+++||++..|.  ...|..+.                                | 
T Consensus         1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~--~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~   78 (318)
T cd05477           1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ--SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDT   78 (318)
T ss_pred             CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC--CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeE
Confidence            578999999999999999999999999999999997  34565433                                1 


Q ss_pred             ---------------------------cCCC----------------------------cccc---ccCC-CCCCcEEEE
Q psy3212          53 ---------------------------KFVG----------------------------HSHF---RNAS-DENGGEIMF   73 (177)
Q Consensus        53 ---------------------------~fdG----------------------------~~~F---~~~~-~~~~G~l~f   73 (177)
                                                 +++|                            +++|   +... ....|.|+|
T Consensus        79 i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~f  158 (318)
T cd05477          79 VTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVF  158 (318)
T ss_pred             EEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEE
Confidence                                       1233                            3455   2221 235799999


Q ss_pred             cccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCCEE
Q psy3212          74 GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAK  150 (177)
Q Consensus        74 Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~~~  150 (177)
                      ||+|++++.|++.|+|+.+..+|.|.+++++++++.+.   .+..+++||||+++++|++++++|++.++++....+.|.
T Consensus       159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~  238 (318)
T cd05477         159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYV  238 (318)
T ss_pred             cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCccccCCCEE
Confidence            99999999999999999988999999999999998753   456899999999999999999999999998866678999


Q ss_pred             EcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         151 VDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       151 ~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +||+....+|.|+|+|+|++++|||++
T Consensus       239 ~~C~~~~~~p~l~~~f~g~~~~v~~~~  265 (318)
T cd05477         239 VNCNNIQNLPTLTFTINGVSFPLPPSA  265 (318)
T ss_pred             EeCCccccCCcEEEEECCEEEEECHHH
Confidence            999988889999999999999999863

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>PTZ00165 aspartyl protease; Provisional

Probab=100.00  E-value=3.2e-37  Score=254.91  Aligned_cols=167  Identities=38%  Similarity=0.684  Sum_probs=140.3

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.||.|.+|+++|+||||||+|.|++||||+++||+|..|.  +.+|..|.                             
T Consensus       113 l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~--~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsG  190 (482)
T PTZ00165        113 LLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK--SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTG  190 (482)
T ss_pred             cccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcC--cccccccCCCCccccCCcEecCCCCccceEEEEeCCC
Confidence            68999999999999999999999999999999999999987  33454322                             


Q ss_pred             --------C----------------------------cCCC-------------------------------cccc---c
Q psy3212          52 --------D----------------------------KFVG-------------------------------HSHF---R   61 (177)
Q Consensus        52 --------D----------------------------~fdG-------------------------------~~~F---~   61 (177)
                              |                            ++||                               +|+|   +
T Consensus       191 s~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL  270 (482)
T PTZ00165        191 ECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYM  270 (482)
T ss_pred             cEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEe
Confidence                    1                            3455                               3445   2


Q ss_pred             cCCCCCCcEEEEcccCCCCe--eeeeeEEecCcccceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHHHHHH
Q psy3212          62 NASDENGGEIMFGGVDKDKF--VGDITYSPVSRKGYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVIAELN  136 (177)
Q Consensus        62 ~~~~~~~G~l~fGg~d~~~~--~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~~~l~  136 (177)
                      ......+|+|+|||+|+.++  .|++.|+|+.+..+|.+.+++|+++++.+.   ....|++||||+++++|++++++|.
T Consensus       271 ~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~  350 (482)
T PTZ00165        271 SKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLL  350 (482)
T ss_pred             ccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHH
Confidence            23334579999999999777  578999999999999999999999987553   5788999999999999999999999


Q ss_pred             HHhCCccCCCCCEEEcCCCCCCCccEEEEECCE-----EEEeccCC
Q psy3212         137 KLIGAVPLANGPAKVDCDNLDKMPNVDIILGGK-----NFTLTRTN  177 (177)
Q Consensus       137 ~~~~~~~~~~g~~~~~C~~~~~~p~l~f~~gg~-----~~~l~~~d  177 (177)
                      +++++.        .+|+....+|+|+|+|+|.     +|+|+|+|
T Consensus       351 ~~i~~~--------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~d  388 (482)
T PTZ00165        351 EKIPLE--------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPED  388 (482)
T ss_pred             HHcCCc--------ccccccccCCceEEEECCCCCceEEEEEchHH
Confidence            999875        3899888899999999875     89998764

>PTZ00147 plasmepsin-1; Provisional

Probab=100.00  E-value=1.5e-36  Score=249.31  Aligned_cols=172  Identities=27%  Similarity=0.555  Sum_probs=144.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus       132 L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~--~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~GsvsG~  209 (453)
T PTZ00147        132 LKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT--TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGF  209 (453)
T ss_pred             ccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC--cccccCCCccCCccCcceEECCCEEEEEeCCCCEEEE
Confidence            67899999999999999999999999999999999999997  44676543                             


Q ss_pred             ---C-----------------------------cCCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-----------------------------KFVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-----------------------------~fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                             .+||                            +++|   +.......
T Consensus       210 ~~~DtVtiG~~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~  289 (453)
T PTZ00147        210 FSKDLVTIGNLSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHK  289 (453)
T ss_pred             EEEEEEEECCEEEEEEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCC
Confidence               1                             1344                            3455   33334568


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANG  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g  147 (177)
                      |.|+|||+|+++|+|++.|+|+.+..+|.|.++ +.+++... ....|++||||+++++|++++++|++++++. ....+
T Consensus       290 G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~-~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~~~~  367 (453)
T PTZ00147        290 GYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS-EKANVIVDSGTSVITVPTEFLNKFVESLDVFKVPFLP  367 (453)
T ss_pred             eEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec-CceeEEECCCCchhcCCHHHHHHHHHHhCCeecCCCC
Confidence            999999999999999999999998889999998 57776432 5678999999999999999999999999765 33456


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+. ..+|+|+|.|+|.+++|+|++
T Consensus       368 ~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~  396 (453)
T PTZ00147        368 LYVTTCNN-TKLPTLEFRSPNKVYTLEPEY  396 (453)
T ss_pred             eEEEeCCC-CCCCeEEEEECCEEEEECHHH
Confidence            78999996 578999999999999999864

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=100.00  E-value=4.5e-36  Score=246.07  Aligned_cols=172  Identities=29%  Similarity=0.612  Sum_probs=143.1

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||++.|++||||+++||+|..|.  ...|..+.                             
T Consensus       131 l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~--~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gsv~G~  208 (450)
T PTZ00013        131 LDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD--SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGF  208 (450)
T ss_pred             eeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC--ccccccCCCccCccCcccccCCcEEEEEECCceEEEE
Confidence            56899999999999999999999999999999999999997  34565433                             


Q ss_pred             ---C-----------------------------cCCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-----------------------------KFVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-----------------------------~fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                             .+||                            +++|   +.......
T Consensus       209 ~~~Dtv~iG~~~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~  288 (450)
T PTZ00013        209 FSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHA  288 (450)
T ss_pred             EEEEEEEECCEEEccEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCC
Confidence               1                             1345                            3445   22233468


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANG  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g  147 (177)
                      |.|+|||+|+++|+|+|.|+|+.+..+|.|.++ +.+|.... .+..|++||||+++++|+++++++++++++. ....+
T Consensus       289 G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~-~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~~~~  366 (450)
T PTZ00013        289 GYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM-QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLP  366 (450)
T ss_pred             CEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec-cccceEECCCCccccCCHHHHHHHHHHhCCeecCCCC
Confidence            999999999999999999999998899999998 66765433 5677999999999999999999999999776 34466


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+. ..+|+|+|+|+|.+++|+|++
T Consensus       367 ~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~  395 (450)
T PTZ00013        367 FYVTTCDN-KEMPTLEFKSANNTYTLEPEY  395 (450)
T ss_pred             eEEeecCC-CCCCeEEEEECCEEEEECHHH
Confidence            79999986 578999999999999999863

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=100.00  E-value=2.9e-33  Score=218.01  Aligned_cols=156  Identities=31%  Similarity=0.571  Sum_probs=125.0

Q ss_pred             EEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCC------------CCCCCC-C-------------------C----
Q psy3212           9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN------------IACSVD-K-------------------D----   52 (177)
Q Consensus         9 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~------------~~c~~~-~-------------------D----   52 (177)
                      |+++|+||||||++.|++||||+++||++..|..+.            ..|... .                   |    
T Consensus         1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~i   80 (278)
T cd06097           1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVSI   80 (278)
T ss_pred             CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEEE
Confidence            799999999999999999999999999999886220            011100 0                   1    


Q ss_pred             ------------------------cCCC-----------------------------cccc-ccCCCCCCcEEEEcccCC
Q psy3212          53 ------------------------KFVG-----------------------------HSHF-RNASDENGGEIMFGGVDK   78 (177)
Q Consensus        53 ------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~fGg~d~   78 (177)
                                              .+||                             +++| ........|+|+|||+|+
T Consensus        81 g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~~l~~~~~G~l~fGg~D~  160 (278)
T cd06097          81 GGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTADLRKAAPGFYTFGYIDE  160 (278)
T ss_pred             CCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEEEEecCCCCcEEEEeccCh
Confidence                                    1233                             1233 111224689999999999


Q ss_pred             CCeeeeeeEEecCc-ccceEEEEeEEEEcCeEe-c-CCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc-cCCCCCEEEcC
Q psy3212          79 DKFVGDITYSPVSR-KGYWQFGVESIKIEKNVY-C-SNCQAIADTGTSLIIGPSKVIAELNKLI-GAV-PLANGPAKVDC  153 (177)
Q Consensus        79 ~~~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~-~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~-~~~~g~~~~~C  153 (177)
                      ++|.|++.|+|+.+ ..+|.|++++++++++.. . ....++|||||+++++|++++++|++++ ++. ....+.|.+||
T Consensus       161 ~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~~~~~~~~C  240 (278)
T cd06097         161 SKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSEYGGWVFPC  240 (278)
T ss_pred             HHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCCCCEEEEEC
Confidence            99999999999986 789999999999999833 3 7889999999999999999999999999 565 45578899999


Q ss_pred             CCCCCCccEEEEE
Q psy3212         154 DNLDKMPNVDIIL  166 (177)
Q Consensus       154 ~~~~~~p~l~f~~  166 (177)
                      +.  .+|+|+|+|
T Consensus       241 ~~--~~P~i~f~~  251 (278)
T cd06097         241 DT--TLPDLSFAV  251 (278)
T ss_pred             CC--CCCCEEEEE
Confidence            95  399999987

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=100.00  E-value=3.3e-33  Score=220.58  Aligned_cols=168  Identities=39%  Similarity=0.766  Sum_probs=140.6

Q ss_pred             eEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------C---
Q psy3212           8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------D---   52 (177)
Q Consensus         8 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------D---   52 (177)
                      +|+++|+||||+|+++|++||||+++||++..|..+ ..|..+.                                |   
T Consensus         1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~-~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~   79 (317)
T PF00026_consen    1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC-SSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVS   79 (317)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH-THHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CeEEEEEECCCCeEEEEEEecccceeeeceeccccc-cccccccccccccccccccceeeeeeeccCcccccccccceEe
Confidence            699999999999999999999999999999888732 0122111                                1   


Q ss_pred             -------------------------cCCC-----------------------------cccc---ccCCCCCCcEEEEcc
Q psy3212          53 -------------------------KFVG-----------------------------HSHF---RNASDENGGEIMFGG   75 (177)
Q Consensus        53 -------------------------~fdG-----------------------------~~~F---~~~~~~~~G~l~fGg   75 (177)
                                               +++|                             +++|   ........|.|+|||
T Consensus        80 ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg  159 (317)
T PF00026_consen   80 IGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGG  159 (317)
T ss_dssp             ETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESS
T ss_pred             eeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecccccchheeec
Confidence                                     3344                             3344   222225679999999


Q ss_pred             cCCCCeeeeeeEEecCcccceEEEEeEEEEcCe-Eec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCCEEEcC
Q psy3212          76 VDKDKFVGDITYSPVSRKGYWQFGVESIKIEKN-VYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDC  153 (177)
Q Consensus        76 ~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~-~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C  153 (177)
                      +|+++|.|++.|+|+....+|.+.+++|.+++. ... ....+++|||++++++|++++++|++++++.... +.|.++|
T Consensus       160 ~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-~~~~~~c  238 (317)
T PF00026_consen  160 YDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-GVYSVPC  238 (317)
T ss_dssp             EEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC-SEEEEET
T ss_pred             cccccccCceeccCcccccccccccccccccccccccccceeeecccccccccccchhhHHHHhhhcccccc-eeEEEec
Confidence            999999999999999999999999999999999 444 6688999999999999999999999999887333 8899999


Q ss_pred             CCCCCCccEEEEECCEEEEeccCC
Q psy3212         154 DNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       154 ~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +....+|.|+|.|++.+++|||++
T Consensus       239 ~~~~~~p~l~f~~~~~~~~i~~~~  262 (317)
T PF00026_consen  239 NSTDSLPDLTFTFGGVTFTIPPSD  262 (317)
T ss_dssp             TGGGGSEEEEEEETTEEEEEEHHH
T ss_pred             ccccccceEEEeeCCEEEEecchH
Confidence            987789999999999999999864

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>KOG1339|consensus

Probab=100.00  E-value=1.6e-31  Score=217.60  Aligned_cols=177  Identities=37%  Similarity=0.735  Sum_probs=144.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCC-C-----------------CCCCCCC------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSI-L-----------------NIACSVD------------   50 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~-~-----------------~~~c~~~------------   50 (177)
                      +..+.+.+|+++|.||||||+|.|++||||+++||+|..|.. +                 ...|...            
T Consensus        39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~  118 (398)
T KOG1339|consen   39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPN  118 (398)
T ss_pred             cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccC
Confidence            356778899999999999999999999999999999988861 1                 0122220            


Q ss_pred             -----C---------------C-------------------------------cCCC---------------------cc
Q psy3212          51 -----K---------------D-------------------------------KFVG---------------------HS   58 (177)
Q Consensus        51 -----~---------------D-------------------------------~fdG---------------------~~   58 (177)
                           .               |                               ++||                     .+
T Consensus       119 ~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~  198 (398)
T KOG1339|consen  119 SSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAIN  198 (398)
T ss_pred             CcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCce
Confidence                 0               1                               1344                     22


Q ss_pred             cc---ccCCC---CCCcEEEEcccCCCCeeeeeeEEecCccc--ceEEEEeEEEEcCe------Eec-CCcEEEEeCCCC
Q psy3212          59 HF---RNASD---ENGGEIMFGGVDKDKFVGDITYSPVSRKG--YWQFGVESIKIEKN------VYC-SNCQAIADTGTS  123 (177)
Q Consensus        59 ~F---~~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~~~--~w~v~~~~i~v~~~------~~~-~~~~ai~DSGt~  123 (177)
                      +|   +....   ...|.|+||++|+.++.+.+.|+|+....  +|.+.+.+|+|+++      .+. ....+++||||+
T Consensus       199 ~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs  278 (398)
T KOG1339|consen  199 VFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTS  278 (398)
T ss_pred             eEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcc
Confidence            35   22221   25899999999999999999999999776  99999999999973      333 358899999999


Q ss_pred             cEEeCHHHHHHHHHHhCCc---cCCCCCEEEcCCCCCC----CccEEEEEC-CEEEEeccCC
Q psy3212         124 LIIGPSKVIAELNKLIGAV---PLANGPAKVDCDNLDK----MPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       124 ~~~lP~~~~~~l~~~~~~~---~~~~g~~~~~C~~~~~----~p~l~f~~g-g~~~~l~~~d  177 (177)
                      +++||.++|++|.++++++   ....+.+.++|.....    +|.|+|+|+ |+.+.+++++
T Consensus       279 ~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~  340 (398)
T KOG1339|consen  279 LTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKN  340 (398)
T ss_pred             eeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccc
Confidence            9999999999999999987   6778889999998776    999999999 8999999985

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=100.00  E-value=4.7e-32  Score=213.19  Aligned_cols=168  Identities=24%  Similarity=0.437  Sum_probs=128.9

Q ss_pred             eEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCC-----CC-------------------------CCCCCC----c
Q psy3212           8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN-----IA-------------------------CSVDKD----K   53 (177)
Q Consensus         8 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~-----~~-------------------------c~~~~D----~   53 (177)
                      +|+++|.||||||++.|++||||+++||+|..|....     ..                         |....+    .
T Consensus         1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~   80 (299)
T cd05472           1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPCCLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGG   80 (299)
T ss_pred             CeEEEEecCCCCcceEEEecCCCCcccccCCCCCeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCC
Confidence            5999999999999999999999999999988762110     00                         000000    2


Q ss_pred             CCC-------------------cccc---ccCCC-CCCcEEEEcccCCCCeeeeeeEEecCcc----cceEEEEeEEEEc
Q psy3212          54 FVG-------------------HSHF---RNASD-ENGGEIMFGGVDKDKFVGDITYSPVSRK----GYWQFGVESIKIE  106 (177)
Q Consensus        54 fdG-------------------~~~F---~~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~w~v~~~~i~v~  106 (177)
                      ++|                   +++|   +.... ...|+|+|||+|++  .|++.|+|+...    .+|.|++++|+|+
T Consensus        81 ~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg  158 (299)
T cd05472          81 AAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVG  158 (299)
T ss_pred             CCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCCCceEEeCCcccc--CCCceECCCccCCCCCCeEEEeeEEEEEC
Confidence            444                   3567   22222 56899999999998  899999999853    6899999999999


Q ss_pred             CeEec------CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCcc----CCCCCEEEc-CCC-----CCCCccEEEEEC-CE
Q psy3212         107 KNVYC------SNCQAIADTGTSLIIGPSKVIAELNKLIGAVP----LANGPAKVD-CDN-----LDKMPNVDIILG-GK  169 (177)
Q Consensus       107 ~~~~~------~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~----~~~g~~~~~-C~~-----~~~~p~l~f~~g-g~  169 (177)
                      ++.+.      ....+++||||+++++|++++++|.++++++.    ...+.+.++ |..     ...+|+|+|+|+ |+
T Consensus       159 ~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~  238 (299)
T cd05472         159 GRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGA  238 (299)
T ss_pred             CEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCC
Confidence            98764      24579999999999999999999999986541    123344554 753     357999999997 89


Q ss_pred             EEEeccCC
Q psy3212         170 NFTLTRTN  177 (177)
Q Consensus       170 ~~~l~~~d  177 (177)
                      +++|+|++
T Consensus       239 ~~~l~~~~  246 (299)
T cd05472         239 DVELDASG  246 (299)
T ss_pred             EEEeCccc
Confidence            99999975

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=99.97  E-value=3.9e-31  Score=207.35  Aligned_cols=169  Identities=31%  Similarity=0.543  Sum_probs=133.4

Q ss_pred             eEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCC------------------------CCCCCCcCCC-------
Q psy3212           8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIA------------------------CSVDKDKFVG-------   56 (177)
Q Consensus         8 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~------------------------c~~~~D~fdG-------   56 (177)
                      .|+++|+||||+|++.|++||||+++||+.-.....+..                        |......++|       
T Consensus         2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~~   81 (295)
T cd05474           2 YYSAELSVGTPPQKVTVLLDTGSSDLWVPDFSISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTSSDVGVLGIGLP   81 (295)
T ss_pred             eEEEEEEECCCCcEEEEEEeCCCCcceeeeeEEEeccCCcEEEEEEEEEEEECCeEecceEEEEEecCCCCcceeeECCC
Confidence            699999999999999999999999999993221100000                        0000012233       


Q ss_pred             --------------------------cccc---ccCCCCCCcEEEEcccCCCCeeeeeeEEecCcc------cceEEEEe
Q psy3212          57 --------------------------HSHF---RNASDENGGEIMFGGVDKDKFVGDITYSPVSRK------GYWQFGVE  101 (177)
Q Consensus        57 --------------------------~~~F---~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~------~~w~v~~~  101 (177)
                                                +++|   +.......|.|+|||+|+++|.|++.|+|+...      .+|.|.++
T Consensus        82 ~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~  161 (295)
T cd05474          82 GNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLS  161 (295)
T ss_pred             CCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEE
Confidence                                      2344   222234689999999999999999999999965      78999999


Q ss_pred             EEEEcCeEe----c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCCCEEEcCCCCCCCccEEEEECCEEEEecc
Q psy3212         102 SIKIEKNVY----C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANGPAKVDCDNLDKMPNVDIILGGKNFTLTR  175 (177)
Q Consensus       102 ~i~v~~~~~----~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~  175 (177)
                      +|+++++..    . ....+++||||++++||.+++++|++++++. ....+.|.++|+.... |.|+|+|+|++++||+
T Consensus       162 ~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~  240 (295)
T cd05474         162 SISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKDD-GSLTFNFGGATISVPL  240 (295)
T ss_pred             EEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEH
Confidence            999998863    3 6778999999999999999999999999887 4446789999997666 9999999999999998


Q ss_pred             CC
Q psy3212         176 TN  177 (177)
Q Consensus       176 ~d  177 (177)
                      ++
T Consensus       241 ~~  242 (295)
T cd05474         241 SD  242 (295)
T ss_pred             HH
Confidence            64

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=99.97  E-value=1e-30  Score=210.74  Aligned_cols=170  Identities=26%  Similarity=0.439  Sum_probs=129.7

Q ss_pred             ceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCC--------CCCCCCCC------------------C--------
Q psy3212           7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSIL--------NIACSVDK------------------D--------   52 (177)
Q Consensus         7 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~--------~~~c~~~~------------------D--------   52 (177)
                      ..|+++|+||||+|++.|++||||+++||+|..|...        +.++....                  |        
T Consensus         2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~~~   81 (364)
T cd05473           2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVSIPKGP   81 (364)
T ss_pred             CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEEECCCC
Confidence            4699999999999999999999999999999876521        11111110                  1        


Q ss_pred             ----------------------cCCC-----------------------------cccc---ccC---------CCCCCc
Q psy3212          53 ----------------------KFVG-----------------------------HSHF---RNA---------SDENGG   69 (177)
Q Consensus        53 ----------------------~fdG-----------------------------~~~F---~~~---------~~~~~G   69 (177)
                                            .+||                             +++|   +..         .....|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g  161 (364)
T cd05473          82 NVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGG  161 (364)
T ss_pred             ccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCc
Confidence                                  1244                             1244   110         123479


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-C-----CcEEEEeCCCCcEEeCHHHHHHHHHHhCCcc
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-S-----NCQAIADTGTSLIIGPSKVIAELNKLIGAVP  143 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~-----~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~  143 (177)
                      .|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+. .     ...+++||||+++++|++++++|.++++++.
T Consensus       162 ~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~  241 (364)
T cd05473         162 SMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAAS  241 (364)
T ss_pred             EEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhc
Confidence            999999999999999999999988899999999999998764 1     2469999999999999999999999997652


Q ss_pred             C----CC---CCEEEcCCCCC-----CCccEEEEECC------EEEEeccC
Q psy3212         144 L----AN---GPAKVDCDNLD-----KMPNVDIILGG------KNFTLTRT  176 (177)
Q Consensus       144 ~----~~---g~~~~~C~~~~-----~~p~l~f~~gg------~~~~l~~~  176 (177)
                      .    ..   +.+.++|....     .+|+|+|+|+|      .+++|+|+
T Consensus       242 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~  292 (364)
T cd05473         242 LIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQ  292 (364)
T ss_pred             ccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHH
Confidence            1    11   23467998543     58999999975      46788875

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=99.96  E-value=3e-29  Score=199.51  Aligned_cols=91  Identities=25%  Similarity=0.504  Sum_probs=82.7

Q ss_pred             CCcEEEEcccCCCCee----------eeeeEEecCcccceEEEEeEEEEcCeE---ec-CCcEEEEeCCCCcEEeCHHHH
Q psy3212          67 NGGEIMFGGVDKDKFV----------GDITYSPVSRKGYWQFGVESIKIEKNV---YC-SNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~----------g~l~~~p~~~~~~w~v~~~~i~v~~~~---~~-~~~~ai~DSGt~~~~lP~~~~  132 (177)
                      ..|.|+|||+|++++.          +++.|+|+.+..+|.|.+++|+++++.   .. ....+++||||++++||++++
T Consensus       171 ~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~~~  250 (326)
T cd06096         171 DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPEDLY  250 (326)
T ss_pred             CCeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHHHH
Confidence            4799999999999987          889999999889999999999999885   23 678899999999999999999


Q ss_pred             HHHHHHhCCccCCCCCEEEcCCCCCCCccEEEEEC-CEEEEeccCC
Q psy3212         133 AELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       133 ~~l~~~~~~~~~~~g~~~~~C~~~~~~p~l~f~~g-g~~~~l~~~d  177 (177)
                      ++|.+.+                    |+|+|.|+ |++++|+|++
T Consensus       251 ~~l~~~~--------------------P~i~~~f~~g~~~~i~p~~  276 (326)
T cd06096         251 NKINNFF--------------------PTITIIFENNLKIDWKPSS  276 (326)
T ss_pred             HHHHhhc--------------------CcEEEEEcCCcEEEECHHH
Confidence            9998887                    89999998 8999999864

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=99.96  E-value=2.6e-28  Score=189.58  Aligned_cols=158  Identities=42%  Similarity=0.799  Sum_probs=128.8

Q ss_pred             EEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCC--------------C------------------C----
Q psy3212           9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVD--------------K------------------D----   52 (177)
Q Consensus         9 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~--------------~------------------D----   52 (177)
                      |+++|.||+|+|++.|++||||+++||+|..|..+...+...              .                  |    
T Consensus         1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~~   80 (283)
T cd05471           1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVTI   80 (283)
T ss_pred             CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEEE
Confidence            789999999999999999999999999999987432111110              0                  1    


Q ss_pred             -----------------------cCCC----------------------------cccc---ccCC--CCCCcEEEEccc
Q psy3212          53 -----------------------KFVG----------------------------HSHF---RNAS--DENGGEIMFGGV   76 (177)
Q Consensus        53 -----------------------~fdG----------------------------~~~F---~~~~--~~~~G~l~fGg~   76 (177)
                                             .++|                            +++|   +...  ....|.|+|||+
T Consensus        81 ~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~  160 (283)
T cd05471          81 GGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGI  160 (283)
T ss_pred             CCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEccc
Confidence                                   1222                            2444   1111  357899999999


Q ss_pred             CCCCeeeeeeEEecCc--ccceEEEEeEEEEcCe--Eec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCCCEE
Q psy3212          77 DKDKFVGDITYSPVSR--KGYWQFGVESIKIEKN--VYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANGPAK  150 (177)
Q Consensus        77 d~~~~~g~l~~~p~~~--~~~w~v~~~~i~v~~~--~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g~~~  150 (177)
                      |++++.+++.|+|+..  ..+|.+.+++|.+++.  ... ....++|||||++++||++++++|++++++. ......+.
T Consensus       161 d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~  240 (283)
T cd05471         161 DPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGGYG  240 (283)
T ss_pred             CccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccccCCcEE
Confidence            9999999999999997  7899999999999997  344 7889999999999999999999999999877 33466788


Q ss_pred             EcCCCCCCCccEEEEE
Q psy3212         151 VDCDNLDKMPNVDIIL  166 (177)
Q Consensus       151 ~~C~~~~~~p~l~f~~  166 (177)
                      .+|.....+|+|+|+|
T Consensus       241 ~~~~~~~~~p~i~f~f  256 (283)
T cd05471         241 VDCSPCDTLPDITFTF  256 (283)
T ss_pred             EeCcccCcCCCEEEEE
Confidence            8999888999999998

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>PLN03146 aspartyl protease family protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=194.62  Aligned_cols=110  Identities=20%  Similarity=0.311  Sum_probs=84.2

Q ss_pred             CCCcEEEEcccCCCCeee-eeeEEecCc---ccceEEEEeEEEEcCeEec-C--------CcEEEEeCCCCcEEeCHHHH
Q psy3212          66 ENGGEIMFGGVDKDKFVG-DITYSPVSR---KGYWQFGVESIKIEKNVYC-S--------NCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        66 ~~~G~l~fGg~d~~~~~g-~l~~~p~~~---~~~w~v~~~~i~v~~~~~~-~--------~~~ai~DSGt~~~~lP~~~~  132 (177)
                      ...|.|+||+.  +++.| .+.|+|+..   ..+|.|.+++|+||++.+. .        ...+||||||++++||+++|
T Consensus       249 ~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y  326 (431)
T PLN03146        249 NGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFY  326 (431)
T ss_pred             CCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHH
Confidence            35799999984  55554 488999973   4699999999999998764 1        24789999999999999999


Q ss_pred             HHHHHHhCCc----c-CCCCCEEEcCCCC---CCCccEEEEECCEEEEeccCC
Q psy3212         133 AELNKLIGAV----P-LANGPAKVDCDNL---DKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       133 ~~l~~~~~~~----~-~~~g~~~~~C~~~---~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ++|.+++..+    . .....+..+|...   ..+|.|+|+|+|+++.|+|++
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~  379 (431)
T PLN03146        327 SELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLN  379 (431)
T ss_pred             HHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcce
Confidence            9987765322    1 1122234578753   368999999999999999864

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=99.95  E-value=1.7e-27  Score=184.51  Aligned_cols=140  Identities=26%  Similarity=0.457  Sum_probs=111.1

Q ss_pred             eEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCC-----CCC-------------C--CCC---------------C
Q psy3212           8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN-----IAC-------------S--VDK---------------D   52 (177)
Q Consensus         8 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~-----~~c-------------~--~~~---------------D   52 (177)
                      +|+++|+||||||++.|++||||+++||+|  |....     ..+             .  ...               .
T Consensus         1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~   78 (265)
T cd05476           1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFG   78 (265)
T ss_pred             CeEEEEecCCCCcceEEEecCCCCCEEEcC--CceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccC
Confidence            599999999999999999999999999997  53110     000             0  000               0


Q ss_pred             cCCC----------------c--ccc---ccCC--CCCCcEEEEcccCCCCeeeeeeEEecCc----ccceEEEEeEEEE
Q psy3212          53 KFVG----------------H--SHF---RNAS--DENGGEIMFGGVDKDKFVGDITYSPVSR----KGYWQFGVESIKI  105 (177)
Q Consensus        53 ~fdG----------------~--~~F---~~~~--~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~~~~i~v  105 (177)
                      .++|                .  ++|   +...  ....|+|+||++|++ +.|++.|+|+..    ..+|.+++++|++
T Consensus        79 ~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v  157 (265)
T cd05476          79 GADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISV  157 (265)
T ss_pred             CCCEEEECCCCcccHHHHhhcccCeeEEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEE
Confidence            2444                1  366   2221  456899999999999 999999999985    4799999999999


Q ss_pred             cCeEe----------c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCCEEEcCCCCCCCccEEEEEC-CEEEEe
Q psy3212         106 EKNVY----------C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG-GKNFTL  173 (177)
Q Consensus       106 ~~~~~----------~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~p~l~f~~g-g~~~~l  173 (177)
                      +++.+          . ....+++||||+++++|++++                           |+|+|+|+ ++++.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~---------------------------P~i~~~f~~~~~~~i  210 (265)
T cd05476         158 GGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY---------------------------PDLTLHFDGGADLEL  210 (265)
T ss_pred             CCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc---------------------------CCEEEEECCCCEEEe
Confidence            99865          2 467899999999999998877                           89999998 899999


Q ss_pred             ccCC
Q psy3212         174 TRTN  177 (177)
Q Consensus       174 ~~~d  177 (177)
                      ++++
T Consensus       211 ~~~~  214 (265)
T cd05476         211 PPEN  214 (265)
T ss_pred             Cccc
Confidence            9875

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=99.95  E-value=4e-27  Score=183.15  Aligned_cols=140  Identities=23%  Similarity=0.432  Sum_probs=110.1

Q ss_pred             eEEEEEEeCCCCceEEEEEecCCCceEEeCC-CCCCCCCCCCCC---C-----------C--------------------
Q psy3212           8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQ-HCSILNIACSVD---K-----------D--------------------   52 (177)
Q Consensus         8 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~c~~~~~~c~~~---~-----------D--------------------   52 (177)
                      +|+++|.||||||++.|++||||+++||+|. .|..+  .|.-.   .           |                    
T Consensus         2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc   79 (273)
T cd05475           2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGC   79 (273)
T ss_pred             ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEe
Confidence            6999999999999999999999999999984 56521  12100   0           1                    


Q ss_pred             -------------cCCC---------------------cccc-ccCCCCCCcEEEEcccCCCCeeeeeeEEecCcc---c
Q psy3212          53 -------------KFVG---------------------HSHF-RNASDENGGEIMFGGVDKDKFVGDITYSPVSRK---G   94 (177)
Q Consensus        53 -------------~fdG---------------------~~~F-~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~   94 (177)
                                   ++||                     +++| ........|.|+||  |..++.|++.|+|+.++   .
T Consensus        80 ~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~~~g~l~~G--~~~~~~g~i~ytpl~~~~~~~  157 (273)
T cd05475          80 GYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFG--DDLVPSSGVTWTPMRRESQKK  157 (273)
T ss_pred             eeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCCCCeEEEEC--CCCCCCCCeeecccccCCCCC
Confidence                         2334                     2456 11122446899998  45667899999999864   7


Q ss_pred             ceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCCEEEcCCCCCCCccEEEEECC----E
Q psy3212          95 YWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG----K  169 (177)
Q Consensus        95 ~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~p~l~f~~gg----~  169 (177)
                      +|.|++.+|+||++... ....+++||||+++++|++++                          +|+|+|+|++    +
T Consensus       158 ~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y--------------------------~p~i~~~f~~~~~~~  211 (273)
T cd05475         158 HYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY--------------------------FKPLTLKFGKGWRTR  211 (273)
T ss_pred             eEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc--------------------------cccEEEEECCCCcee
Confidence            99999999999998766 778899999999999998865                          6899999987    7


Q ss_pred             EEEeccCC
Q psy3212         170 NFTLTRTN  177 (177)
Q Consensus       170 ~~~l~~~d  177 (177)
                      +++|+|++
T Consensus       212 ~~~l~~~~  219 (273)
T cd05475         212 LLEIPPEN  219 (273)
T ss_pred             EEEeCCCc
Confidence            99999975

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall

Probab=99.90  E-value=1.3e-22  Score=163.44  Aligned_cols=112  Identities=20%  Similarity=0.274  Sum_probs=88.0

Q ss_pred             CCCcEEEEcccCCCCee------eeeeEEecCcc----cceEEEEeEEEEcCeEec-----------CCcEEEEeCCCCc
Q psy3212          66 ENGGEIMFGGVDKDKFV------GDITYSPVSRK----GYWQFGVESIKIEKNVYC-----------SNCQAIADTGTSL  124 (177)
Q Consensus        66 ~~~G~l~fGg~d~~~~~------g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~-----------~~~~ai~DSGt~~  124 (177)
                      ...|.|+||+.++.++.      +.+.|+|+..+    .+|.|++++|+||++.+.           ....++|||||++
T Consensus       161 ~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~  240 (362)
T cd05489         161 GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPY  240 (362)
T ss_pred             CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCce
Confidence            45899999999988774      78999999854    799999999999998653           1357999999999


Q ss_pred             EEeCHHHHHHHHHHhCCccCCCCC------EEEcCCC---------CCCCccEEEEECC--EEEEeccCC
Q psy3212         125 IIGPSKVIAELNKLIGAVPLANGP------AKVDCDN---------LDKMPNVDIILGG--KNFTLTRTN  177 (177)
Q Consensus       125 ~~lP~~~~~~l~~~~~~~~~~~g~------~~~~C~~---------~~~~p~l~f~~gg--~~~~l~~~d  177 (177)
                      ++||.++|++|.+++.++....+.      +.-.|..         ...+|+|+|+|+|  ++++|+|++
T Consensus       241 t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~n  310 (362)
T cd05489         241 TVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGAN  310 (362)
T ss_pred             EEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCc
Confidence            999999999999888654111111      0013432         3579999999976  999999985

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=99.24  E-value=1e-11  Score=83.45  Aligned_cols=31  Identities=61%  Similarity=1.173  Sum_probs=29.6

Q ss_pred             EEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          11 GTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        11 ~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      ++|.||||||++.|+|||||+++||+|..|.
T Consensus         1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~   31 (109)
T cd05470           1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ   31 (109)
T ss_pred             CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC
Confidence            4799999999999999999999999999997

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A

Probab=99.07  E-value=3.7e-10  Score=81.29  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             ceEEEEeEEEEcCeEec---C-------CcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCC--------CC----CEEE
Q psy3212          95 YWQFGVESIKIEKNVYC---S-------NCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLA--------NG----PAKV  151 (177)
Q Consensus        95 ~w~v~~~~i~v~~~~~~---~-------~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~--------~g----~~~~  151 (177)
                      +|.|++.+|+||++.+.   .       ...++|||||++++||+++|+++.+++.++ ...        ..    -|..
T Consensus         1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~   80 (161)
T PF14541_consen    1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL   80 (161)
T ss_dssp             SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred             CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence            47899999999999765   2       357999999999999999999999998544 110        11    1333


Q ss_pred             cC----CCCCCCccEEEEEC-CEEEEeccCC
Q psy3212         152 DC----DNLDKMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       152 ~C----~~~~~~p~l~f~~g-g~~~~l~~~d  177 (177)
                      +.    .....+|+|+|+|. |++++|+|++
T Consensus        81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~  111 (161)
T PF14541_consen   81 SSFGVNRDWAKFPTITLHFEGGADLTLPPEN  111 (161)
T ss_dssp             GCS-EETTEESS--EEEEETTSEEEEE-HHH
T ss_pred             cccccccccccCCeEEEEEeCCcceeeeccc
Confidence            33    12247899999998 7999999863

>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A

Probab=98.83  E-value=3e-09  Score=76.82  Aligned_cols=29  Identities=48%  Similarity=1.032  Sum_probs=27.5

Q ss_pred             EEEEEEeCCCCceEEEEEecCCCceEEeC
Q psy3212           9 YYGTISLGTPPQEFKVIFDTGSSNLWIPS   37 (177)
Q Consensus         9 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~   37 (177)
                      |+++|.||||+|++.|++||||+++|++|
T Consensus         1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C   29 (164)
T PF14543_consen    1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC   29 (164)
T ss_dssp             EEEEEECTCTTEEEEEEEETT-SSEEEET
T ss_pred             CEEEEEeCCCCceEEEEEECCCCceEEcC
Confidence            89999999999999999999999999998

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=97.01  E-value=0.0011  Score=42.63  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=26.9

Q ss_pred             eEEEEEEeCCCCceEEEEEecCCCceEEeCCC
Q psy3212           8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQH   39 (177)
Q Consensus         8 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~   39 (177)
                      .|++++.|+  ++++++++|||++.+|+....
T Consensus         2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~   31 (96)
T cd05483           2 HFVVPVTIN--GQPVRFLLDTGASTTVISEEL   31 (96)
T ss_pred             cEEEEEEEC--CEEEEEEEECCCCcEEcCHHH
Confidence            589999999  699999999999999998653

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=95.71  E-value=0.014  Score=37.53  Aligned_cols=31  Identities=23%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             EEEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212           9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus         9 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      |++.+.|+  ++++.+++||||+..++....+.
T Consensus         1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~   31 (91)
T cd05484           1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR   31 (91)
T ss_pred             CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH
Confidence            57889999  59999999999999999876654

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=95.04  E-value=0.042  Score=37.52  Aligned_cols=34  Identities=15%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCC
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQ   38 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~   38 (177)
                      ...+..|++++.|.  ++++.++||||++.+-+...
T Consensus         6 ~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~   39 (121)
T TIGR02281         6 KDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEE   39 (121)
T ss_pred             EcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence            34678899999998  58999999999999988644

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease

Probab=94.60  E-value=0.09  Score=32.36  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      .....+++.+.||.  +.+.+++||||+..+|....+.
T Consensus         4 ~~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a~   39 (72)
T PF13975_consen    4 PDPGLMYVPVSIGG--VQVKALVDTGATHNFISESLAK   39 (72)
T ss_pred             ccCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHHH
Confidence            45678999999995  9999999999999999866544

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=94.54  E-value=0.14  Score=34.93  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=29.7

Q ss_pred             cccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212          92 RKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus        92 ~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      ..+++.+.   +++||+.+    .+++|||++.+.++.+.++++
T Consensus         8 ~~g~~~v~---~~InG~~~----~flVDTGAs~t~is~~~A~~L   44 (121)
T TIGR02281         8 GDGHFYAT---GRVNGRNV----RFLVDTGATSVALNEEDAQRL   44 (121)
T ss_pred             CCCeEEEE---EEECCEEE----EEEEECCCCcEEcCHHHHHHc
Confidence            45566555   67788744    699999999999999999887

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=94.46  E-value=0.22  Score=31.91  Aligned_cols=64  Identities=22%  Similarity=0.271  Sum_probs=39.5

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc----cCCCCCEEEcCCCCCCCccEEEEECCEEEEec
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLI-GAV----PLANGPAKVDCDNLDKMPNVDIILGGKNFTLT  174 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~----~~~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~  174 (177)
                      +.|+|+.+    .+++|||++.+.++.+.+.++.... ...    ...+|. .+.|.  ... .+.+++++.++.++
T Consensus         5 ~~Ing~~i----~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~-~~~~~--G~~-~~~v~~~~~~~~~~   73 (91)
T cd05484           5 LLVNGKPL----KFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGT-KLSVL--GQI-LVTVKYGGKTKVLT   73 (91)
T ss_pred             EEECCEEE----EEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCC-EeeEe--EEE-EEEEEECCEEEEEE
Confidence            67777755    5999999999999999998774332 111    111222 12222  112 46777888766553

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.23  E-value=0.21  Score=32.45  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=25.0

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      +.+|.|..  +++++++||||+..-+....+.
T Consensus         7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~~   36 (100)
T PF00077_consen    7 YITVKING--KKIKALLDTGADVSIISEKDWK   36 (100)
T ss_dssp             EEEEEETT--EEEEEEEETTBSSEEESSGGSS
T ss_pred             eEEEeECC--EEEEEEEecCCCcceecccccc
Confidence            46788884  8999999999999999876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....

>PF13650 Asp_protease_2: Aspartyl protease

Probab=93.20  E-value=0.18  Score=31.65  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=24.2

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      ++++++.+    .+++|||++.+.++++.++++
T Consensus         3 v~vng~~~----~~liDTGa~~~~i~~~~~~~l   31 (90)
T PF13650_consen    3 VKVNGKPV----RFLIDTGASISVISRSLAKKL   31 (90)
T ss_pred             EEECCEEE----EEEEcCCCCcEEECHHHHHHc
Confidence            56666544    699999999999999999887

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=92.50  E-value=0.44  Score=30.24  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=24.4

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELN  136 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~  136 (177)
                      +.++++.+    .+++|||++.+.++.+.++.+.
T Consensus         7 v~i~~~~~----~~llDTGa~~s~i~~~~~~~l~   36 (96)
T cd05483           7 VTINGQPV----RFLLDTGASTTVISEELAERLG   36 (96)
T ss_pred             EEECCEEE----EEEEECCCCcEEcCHHHHHHcC
Confidence            66776544    5999999999999998887763

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=92.39  E-value=0.27  Score=33.55  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=28.0

Q ss_pred             CceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212           6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus         6 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      ...+++++.|+  ++++++++|||++..++....+.
T Consensus        14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~   47 (124)
T cd05479          14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE   47 (124)
T ss_pred             eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH
Confidence            45689999999  58999999999999998755443

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease

Probab=92.37  E-value=0.35  Score=29.68  Aligned_cols=29  Identities=21%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      +.+++..+    .+++|||++..+++.+.++.+
T Consensus        13 ~~I~g~~~----~alvDtGat~~fis~~~a~rL   41 (72)
T PF13975_consen   13 VSIGGVQV----KALVDTGATHNFISESLAKRL   41 (72)
T ss_pred             EEECCEEE----EEEEeCCCcceecCHHHHHHh
Confidence            66777655    499999999999999999887

>PF13650 Asp_protease_2: Aspartyl protease

Probab=91.63  E-value=0.25  Score=31.05  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             EEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          12 TISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        12 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      ++.|+  .+++++++|||++...+....+.
T Consensus         2 ~v~vn--g~~~~~liDTGa~~~~i~~~~~~   29 (90)
T PF13650_consen    2 PVKVN--GKPVRFLIDTGASISVISRSLAK   29 (90)
T ss_pred             EEEEC--CEEEEEEEcCCCCcEEECHHHHH
Confidence            57777  48999999999998888655443

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=89.73  E-value=0.73  Score=29.21  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=24.2

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      +.+||+.+    ..++|||++.+.++++.++.+
T Consensus         3 v~InG~~~----~fLvDTGA~~tii~~~~a~~~   31 (86)
T cd06095           3 ITVEGVPI----VFLVDTGATHSVLKSDLGPKQ   31 (86)
T ss_pred             EEECCEEE----EEEEECCCCeEEECHHHhhhc
Confidence            55666654    599999999999999999886

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=89.08  E-value=0.89  Score=30.99  Aligned_cols=29  Identities=17%  Similarity=0.269  Sum_probs=24.1

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      +.+++..+    .+++|||++.+.++++.++++
T Consensus        21 ~~Ing~~~----~~LvDTGAs~s~Is~~~a~~l   49 (124)
T cd05479          21 VEINGVPV----KAFVDSGAQMTIMSKACAEKC   49 (124)
T ss_pred             EEECCEEE----EEEEeCCCceEEeCHHHHHHc
Confidence            56666644    599999999999999999875

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=88.64  E-value=0.45  Score=30.19  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             EEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          12 TISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        12 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      .+.|.  ++++++++|||++.+-+....+.
T Consensus         2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~   29 (86)
T cd06095           2 TITVE--GVPIVFLVDTGATHSVLKSDLGP   29 (86)
T ss_pred             EEEEC--CEEEEEEEECCCCeEEECHHHhh
Confidence            35665  58999999999999999876654

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.16  E-value=0.93  Score=32.60  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=25.0

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQH   39 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~   39 (177)
                      .+.+.++.-..++++++||||...++....
T Consensus        34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~di   63 (177)
T PF12384_consen   34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSDI   63 (177)
T ss_pred             EEEEEEeecCcEEEEEEeCCCccceeehhh
Confidence            456777777899999999999999997653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].

>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases

Probab=86.98  E-value=1.2  Score=28.64  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=22.8

Q ss_pred             EEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          12 TISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        12 ~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      .+.|+  +|.+++++|||+.++-+......
T Consensus         2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~~p   29 (87)
T cd05482           2 TLYIN--GKLFEGLLDTGADVSIIAENDWP   29 (87)
T ss_pred             EEEEC--CEEEEEEEccCCCCeEEcccccC
Confidence            45677  69999999999999999865543

This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro

>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family

Probab=83.72  E-value=1.3  Score=29.46  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             CcEEEEeCCCCcEE-eCHHHHHHH
Q psy3212         113 NCQAIADTGTSLII-GPSKVIAEL  135 (177)
Q Consensus       113 ~~~ai~DSGt~~~~-lP~~~~~~l  135 (177)
                      .-.+++|||.+... +|.++++++
T Consensus        16 ~v~~LVDTGat~~~~l~~~~a~~l   39 (107)
T TIGR03698        16 EVRALVDTGFSGFLLVPPDIVNKL   39 (107)
T ss_pred             EEEEEEECCCCeEEecCHHHHHHc
Confidence            45699999999886 999999886

Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.

>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.25  E-value=2.3  Score=29.22  Aligned_cols=30  Identities=23%  Similarity=0.200  Sum_probs=24.1

Q ss_pred             EEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         102 SIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       102 ~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      .+++||+.+    .|++|||+..+.++.+.++++
T Consensus        28 ~~~ing~~v----kA~VDtGAQ~tims~~~a~r~   57 (124)
T PF09668_consen   28 NCKINGVPV----KAFVDTGAQSTIMSKSCAERC   57 (124)
T ss_dssp             EEEETTEEE----EEEEETT-SS-EEEHHHHHHT
T ss_pred             EEEECCEEE----EEEEeCCCCccccCHHHHHHc
Confidence            377888766    599999999999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.

>COG3577 Predicted aspartyl protease [General function prediction only]

Probab=82.51  E-value=4.1  Score=30.43  Aligned_cols=36  Identities=14%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             ccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212          93 KGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus        93 ~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      ++|+.++   ..|||+.+    ..++|||.+.+.++.+..+.+
T Consensus       103 ~GHF~a~---~~VNGk~v----~fLVDTGATsVal~~~dA~Rl  138 (215)
T COG3577         103 DGHFEAN---GRVNGKKV----DFLVDTGATSVALNEEDARRL  138 (215)
T ss_pred             CCcEEEE---EEECCEEE----EEEEecCcceeecCHHHHHHh
Confidence            4444444   77888766    499999999999999998776

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.41  E-value=1.8  Score=27.88  Aligned_cols=30  Identities=30%  Similarity=0.377  Sum_probs=23.0

Q ss_pred             EEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         102 SIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       102 ~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      .+.++++.+    .+++|||+..+.++.+.+...
T Consensus         9 ~v~i~g~~i----~~LlDTGA~vsiI~~~~~~~~   38 (100)
T PF00077_consen    9 TVKINGKKI----KALLDTGADVSIISEKDWKKL   38 (100)
T ss_dssp             EEEETTEEE----EEEEETTBSSEEESSGGSSST
T ss_pred             EEeECCEEE----EEEEecCCCcceecccccccc
Confidence            366777655    599999999999998765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....

>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats

Probab=80.03  E-value=2.8  Score=27.09  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             CcEEEEeCCCCcEEeCHHHHHHHH
Q psy3212         113 NCQAIADTGTSLIIGPSKVIAELN  136 (177)
Q Consensus       113 ~~~ai~DSGt~~~~lP~~~~~~l~  136 (177)
                      ...+.+|||++...+|...++.+.
T Consensus        10 ~v~~~vDtGA~vnllp~~~~~~l~   33 (93)
T cd05481          10 SVKFQLDTGATCNVLPLRWLKSLT   33 (93)
T ss_pred             eEEEEEecCCEEEeccHHHHhhhc
Confidence            346899999999999999999886

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
1tzs_A	351	Crystal Structure Of An Activation Intermediate Of		4e-21
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		4e-21
1psa_A	326	Structure Of A Pepsin(Slash)renin Inhibitor Complex		6e-19
1f34_A	326	Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou		6e-19
4pep_A	326	The Molecular And Crystal Structures Of Monoclinic		7e-19
3pep_A	326	Revised 2.3 Angstroms Structure Of Porcine Pepsin.		7e-19
3psg_A	370	The High Resolution Crystal Structure Of Porcine Pe		1e-18
2psg_A	370	Refined Structure Of Porcine Pepsinogen At 1.8 Angs		1e-18
1g0v_A	329	The Structure Of Proteinase A Complexed With A Ia3		3e-18
5pep_A	326	X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim		4e-18
3cms_A	323	Engineering Enzyme Sub-Site Specificity: Preparatio		6e-18
1czi_E	323	Chymosin Complex With The Inhibitor Cp-113972 Lengt		6e-18
1dp5_A	329	The Structure Of Proteinase A Complexed With A Ia3		7e-18
2jxr_A	329	Structure Of Yeast Proteinase A Length = 329		8e-18
1htr_B	329	Crystal And Molecular Structures Of Human Progastri		1e-17
1flh_A	326	Crystal Structure Of Human Uropepsin At 2.45 A Reso		1e-17
1pso_E	326	The Crystal Structure Of Human Pepsin And Its Compl		1e-17
1b5f_A	239	Native Cardosin A From Cynara Cardunculus L. Length		2e-17
1am5_A	324	The Crystal Structure And Proposed Amino Acid Seque		2e-15
4aa9_A	320	Camel Chymosin At 1.6a Resolution Length = 320		4e-15
1lyw_A	97	Cathepsin D At Ph 7.5 Length = 97		1e-13
1yg9_A	330	The Structure Of Mutant (N93q) Of Bla G 2 Length =		2e-13
3liz_A	334	Crystal Structure Of Bla G 2 Complexed With Fab 4c3		2e-13
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		5e-13
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		6e-11
3oad_A	166	Design And Optimization Of New Piperidines As Renin		2e-12
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		2e-12
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		1e-09
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		2e-12
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		9e-10
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		2e-12
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		1e-09
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		2e-12
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		1e-09
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		2e-12
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		9e-10
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		2e-12
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		1e-09
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		2e-12
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		1e-09
1qdm_A	478	Crystal Structure Of Prophytepsin, A Zymogen Of A B		2e-11
3oad_B	176	Design And Optimization Of New Piperidines As Renin		3e-09
1wkr_A	340	Crystal Structure Of Aspartic Proteinase From Irpex		6e-08
2ewy_A	383	Crystal Structure Of Human Bace2 In Complex With A		5e-06
1uh7_A	325	Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt		5e-06
1j71_A	334	Structure Of The Extracellular Aspartic Proteinase		6e-06
3apr_E	325	Binding Of A Reduced Peptide Inhibitor To The Aspar		6e-06
3apr_E	325	Binding Of A Reduced Peptide Inhibitor To The Aspar		6e-06
1ls5_A	328	Crystal Structure Of Plasmepsin Iv From P. Falcipar		6e-06
1ls5_A	328	Crystal Structure Of Plasmepsin Iv From P. Falcipar		8e-06
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		9e-06
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		9e-05
2qzx_A	342	Secreted Aspartic Proteinase (Sap) 5 From Candida A		1e-05
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		1e-05
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		1e-04
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		2e-05
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		5e-05
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		2e-05
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		8e-05
1gvt_A	329	Endothiapepsin Complex With Cp-80,794 Length = 329		6e-05
1gkt_A	329	Neutron Laue Diffraction Structure Of Endothiapepsi		6e-05
2bju_A	453	Plasmepsin Ii Complexed With A Highly Active Achira		7e-05
3f9q_A	329	Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla		7e-05
1er8_E	330	The Active Site Of Aspartic Proteinases Length = 33		7e-05
1m43_A	331	Crystal Structure Of Pmii In Complex With Pepstatin		7e-05
1sme_A	329	Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P		7e-05
1lf3_A	331	Crystal Structure Of Plasmepsin Ii From P Falciparu		8e-05
2rmp_A	361	Rmp-Pepstatin A Complex Length = 361		8e-05
1pfz_A	380	Proplasmepsin Ii From Plasmodium Falciparum Length		8e-05
1mpp_A	361	X-Ray Analyses Of Aspartic Proteinases. V. Structur		1e-04
1epr_E	330	Endothia Aspartic Proteinase (Endothiapepsin) Compl		1e-04
1ppl_E	323	Crystallographic Analysis Of Transition-State Mimic		1e-04
3fv3_A	339	Secreted Aspartic Protease 1 From Candida Parapsilo		2e-04
3l58_A	414	Structure Of Bace Bound To Sch589432 Length = 414		3e-04
3vv6_A	416	Crystal Structure Of Beta Secetase In Complex With		3e-04
3dm6_A	406	Beta-Secretase 1 Complexed With Statine-Based Inhib		3e-04
2zjk_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-04
2zji_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-04
2zjh_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		3e-04
3ixk_A	405	Potent Beta-Secretase 1 Inhibitor Length = 405		3e-04
1tqf_A	405	Crystal Structure Of Human Beta Secretase Complexed		4e-04
3exo_A	413	Crystal Structure Of Bace1 Bound To Inhibitor Lengt		4e-04
2zjn_A	405	Crystal Structure Of The Human Bace1 Catalytic Doma		4e-04
2of0_A	402	X-Ray Crystal Structure Of Beta Secretase Complexed		4e-04
2hm1_A	406	Crystal Structure Of Human Beta-Secretase (Bace) In		4e-04
2fdp_A	388	Crystal Structure Of Beta-Secretase Complexed With		4e-04
3qi1_A	408	Design And Synthesis Of Hydroxyethylamine (Hea) Bac		4e-04
3kmx_A	395	Structure Of Bace Bound To Sch346572 Length = 395		4e-04
1fkn_A	391	Structure Of Beta-Secretase Complexed With Inhibito		4e-04
3ckp_A	412	Crystal Structure Of Bace-1 In Complex With Inhibit		4e-04
2zhr_A	411	Crystal Structure Of Bace1 In Complex With Om99-2 A		4e-04
1w50_A	411	Apo Structure Of Bace (beta Secretase) Length = 411		4e-04
4dpf_A	391	Bace-1 In Complex With A Hea-Macrocyclic Type Inhib		4e-04
1ym2_A	402	Crystal Structure Of Human Beta Secretase Complexed		4e-04
3tpj_A	433	Apo Structure Of Bace1 Length = 433		4e-04
2wjo_A	412	Human Bace (Beta Secretase) In Complex With Cyclohe		4e-04
3hvg_A	411	Structure Of Bace (Beta Secretase) In Complex With		4e-04
2qk5_A	395	Structure Of Bace1 Bound To Sch626485 Length = 395		4e-04
4ewo_A	386	Design And Synthesis Of Potent Hydroxyethylamine (H		4e-04
4b1d_A	388	New Aminoimidazoles As Bace-1 Inhibitors: From Rati		4e-04
2qu2_A	415	Bace1 With Compound 1 Length = 415		4e-04
3udh_A	404	Crystal Structure Of Bace With Compound 1 Length =		4e-04
3tpr_A	433	Crystal Structure Of Bace1 Complexed With An Inhibi		4e-04
2vie_A	392	Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-		4e-04
2q15_A	385	Structure Of Bace Complexed To Compound 3a Length =		4e-04
1sgz_A	389	Crystal Structure Of Unbound Beta-Secretase Catalyt		4e-04
2qzl_A	411	Crystal Structure Of Human Beta Secretase Complexed		4e-04
3u6a_A	390	Rational Design And Synthesis Of Aminopiperazinones		4e-04
3r1g_B	402	Structure Basis Of Allosteric Inhibition Of Bace1 B		4e-04
1ym4_A	408	Crystal Structure Of Human Beta Secretase Complexed		4e-04
3cib_A	390	Structure Of Bace Bound To Sch727596 Length = 390		4e-04
2q11_A	388	Structure Of Bace Complexed To Compound 1 Length =		4e-04
3lpi_A	455	Structure Of Bace Bound To Sch745132 Length = 455		4e-04
2hiz_A	455	Crystal Structure Of Human Beta-Secretase (Bace) In		4e-04
2va5_A	455	X-Ray Crystal Structure Of Beta Secretase Complexed		4e-04
1zap_A	342	Secreted Aspartic Protease From C. Albicans Length		6e-04
1eag_A	342	Secreted Aspartic Proteinase (Sap2) From Candida Al		6e-04

>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAIAD 119
           N     G E++FGG D   F G + + PV+++ YWQ  +++I++   V +CS  CQAI D
Sbjct: 169 NPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIVD 228
Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRT 176
           TGTSLI GPS  I +L   IGA P+ +G   V+C NL+ MP+V   + G  +TL+ T
Sbjct: 229 TGTSLITGPSDKIKQLQNAIGAAPV-DGEYAVECANLNVMPDVTFTINGVPYTLSPT 284

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 41  SILNIACSVDKDKFVGHSHF-----RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGY 95
           ++L +  ++ + K V  + F     R+   + GGE+M GG D   + G ++Y  V+RK Y
Sbjct: 41  NVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAY 100
Query: 96  WQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDC 153
           WQ  ++ +++   +      C+AI DTGTSL++GP   + EL K IGAVPL  G   + C
Sbjct: 101 WQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC 160
Query: 154 DNLDKMPNVDIILGGKNFTLT 174
           + +  +P + + LGGK + L+
Sbjct: 161 EKVSTLPAITLKLGGKGYKLS 181

>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 263 NGVQYPLS 270

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 263 NGVQYPLS 270

>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 263 DGVQYPLS 270

>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 263 DGVQYPLS 270

>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 190 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 246
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   +
Sbjct: 247 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 306
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 307 DGVQYPLS 314

>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 190 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 246
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   +
Sbjct: 247 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 306
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 307 DGVQYPLS 314

>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
           +D+ +F  +    +   ENGGE  FGG+D+ KF GDIT+ PV RK YW+   E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
                +  A  DTGTSLI  PS +   +N  IGA   + G   +DC+  D +P++     
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQYTLDCNTRDNLPDLIFNFN 266
Query: 168 GKNFTL 173
           G NFT+
Sbjct: 267 GYNFTI 272

>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 5/128 (3%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + CS  CQAI DTGTSL+ GP+  IA +   IGA   ++G   + C ++  +P++   +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIASLPDIVFTI 262
Query: 167 GGKNFTLT 174
            G  + L+
Sbjct: 263 NGVQYPLS 270

>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53  KFVGHSHFRNASDENGGEIMF--GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY 110
             V    F    D NG E M   G +D   + G + + PV+ + YWQF V+S+ I   V 
Sbjct: 146 HLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVV 205
Query: 111 CSN--CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
                CQAI DTGTS ++GPS  I  + + IGA     G   +DCDNL  MP V   + G
Sbjct: 206 ACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEING 265
Query: 169 KNFTLT 174
           K + LT
Sbjct: 266 KMYPLT 271

>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53  KFVGHSHFRNASDENGGEIMF--GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY 110
             V    F    D NG E M   G +D   + G + + PV+ + YWQF V+S+ I   V 
Sbjct: 146 HLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVV 205
Query: 111 CSN--CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
                CQAI DTGTS ++GPS  I  + + IGA     G   +DCDNL  MP V   + G
Sbjct: 206 ACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEING 265
Query: 169 KNFTLT 174
           K + LT
Sbjct: 266 KMYPLT 271

>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
           +D+ +F  +    +   ENGGE  FGG+D+ KF GDIT+ PV RK YW+   E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
                +  A  DTGTSLI  PS +   +N  IGA     G   +DC+  D +P++     
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFN 266
Query: 168 GKNFTL 173
           G NFT+
Sbjct: 267 GYNFTI 272

>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
           +D+ +F  +    +   ENGGE  FGG+D+ KF GDIT+ PV RK YW+   E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
                +  A  DTGTSLI  PS +   +N  IGA     G   +DC+  D +P++     
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFN 266
Query: 168 GKNFTL 173
           G NFT+
Sbjct: 267 GYNFTI 272

>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 59  HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCSN-CQ 115
           +  N    +GG ++FGGVD   + G I ++PV+++ YWQ G+E   I  + + +CS  CQ
Sbjct: 154 YLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQ 213
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           AI DTGTSL+  P + ++ L +  GA     G   V+C+++  +P++  I+ G  F L
Sbjct: 214 AIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPL 271

>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +A D++G  ++FGG+D   + G + + PV+ +GYWQ  V+SI +  +
Sbjct: 146 VSQDLF---SVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + C+  CQAI DTGTSL+ GP+  IA +   IGA   ++G   V C  +  +P++   +
Sbjct: 203 AIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTI 262
Query: 167 GGKNF 171
            G  +
Sbjct: 263 NGVQY 267

>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V +D F   S + +A D++G  ++FGG+D   + G + + PV+ +GYWQ  V+SI +  +
Sbjct: 146 VSQDLF---SVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
            + C+  CQAI DTGTSL+ GP+  IA +   IGA   ++G   V C  +  +P++   +
Sbjct: 203 AIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTI 262
Query: 167 GGKNF 171
            G  +
Sbjct: 263 NGVQY 267

>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAI 117
           RN  +E GGE++FGG+D + F GD TY PV+ + YWQFG+  + I  +   +C+  CQA 
Sbjct: 155 RNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAF 214
Query: 118 ADTGTSLIIGPSKVIAELNKLIGA 141
           AD+GTSL+ GP+ ++ ++N  IGA
Sbjct: 215 ADSGTSLLSGPTAIVTQINHAIGA 238

>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
           V+KD F   S + +    NG E+M GGVD   + G I + PV+ + YWQ  ++ I +  +
Sbjct: 146 VEKDLF---SFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQ 202
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
              C  CQAI DTGTS I+ P   +A + K IGA     G    +C ++  +P++   + 
Sbjct: 203 TAACEGCQAIVDTGTSKIVAPVSALANIMKDIGASE-NQGEMMGNCASVQSLPDITFTIN 261
Query: 168 G 168
           G
Sbjct: 262 G 262

>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53  KFVGHSHFRNASDENGGEIMF--GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK-NV 109
             V    F    D NG   M   G +D   + G + + PV+ + YWQF V+S+ I    V
Sbjct: 143 HLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAV 202
Query: 110 YC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
            C   CQAI DTGTS++ GPS  I ++   IGA     G   V+C NL  MP V   + G
Sbjct: 203 ACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMPTVVFEING 262
Query: 169 KNFTLT 174
           +++ L+
Sbjct: 263 RDYPLS 268

>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5 Length = 97

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 15/95 (15%)
Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
          +++   AQYYG I +GTPPQ F V+FDTGSSNLW+PS HC +L+IAC +         H 
Sbjct: 7  LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWI---------HH 57
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGY 95
          +  SD++   +      K+    DI Y   S  GY
Sbjct: 58 KYNSDKSSTYV------KNGTSFDIHYGSGSLSGY 86

>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 59  HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSNCQAI 117
           H R    E+ GEI+FGG D     G+ TY P+     W+F ++ +KI +  V  +  QAI
Sbjct: 158 HARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAI 217
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAV---PLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            DT  ++I+GP   +  +N+ IG V          K+DC  +  +P+V  ++ G+NF ++
Sbjct: 218 IDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 277

>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 59  HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSNCQAI 117
           H R    E+ GEI+FGG D     G+ TY P+     W+F ++ +KI +  V  +  QAI
Sbjct: 160 HARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAI 219
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAV---PLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            DT  ++I+GP   +  +N+ IG V          K+DC  +  +P+V  ++ G+NF ++
Sbjct: 220 IDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 279

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSV 49
          +QYYG I +GTPPQ FKVIFDTGS+NLW+PS  CS L +AC +
Sbjct: 15 SQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGI 57

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSN-CQAIADTGTSLI 125
           GGE++ GG D   + GD  Y  +S+   WQ  ++ + +    + C   C+ + DTG+S I
Sbjct: 167 GGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFI 226
Query: 126 IGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
             P+  +  + + +GA         V C  +  +P++   LGG+ +TL+ T+
Sbjct: 227 SAPTSSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTD 278

>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7   AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
            QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 61  TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 105

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 58  SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
           S + N   EN    GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C 
Sbjct: 202 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 261
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
           + C A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +
Sbjct: 262 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 320
Query: 172 TLT 174
           TLT
Sbjct: 321 TLT 323

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58  SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
           S + N   EN    GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C 
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 218
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
           + C A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +
Sbjct: 219 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 277
Query: 172 TLTRTN 177
           TLT  +
Sbjct: 278 TLTSAD 283

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58  SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
           S + N   EN    GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C 
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 218
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
           + C A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +
Sbjct: 219 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 277
Query: 172 TLTRTN 177
           TLT  +
Sbjct: 278 TLTSAD 283

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 60  FRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSN-CQAI 117
           F    D  GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C + C A+
Sbjct: 160 FYYNRDSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLAL 219
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
            DTG S I G +  I +L + +GA         V C+    +P++   LGGK +TLT  +
Sbjct: 220 VDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEYTLTSAD 278

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 14 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 58

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58  SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
           S + N   EN    GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C 
Sbjct: 155 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 214
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
           + C A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +
Sbjct: 215 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 273
Query: 172 TLTRTN 177
           TLT  +
Sbjct: 274 TLTSAD 279

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 15 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 59

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58  SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
           S + N   EN    GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C 
Sbjct: 156 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 215
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
           + C A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +
Sbjct: 216 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 274
Query: 172 TLTRTN 177
           TLT  +
Sbjct: 275 TLTSAD 280

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC   K
Sbjct: 11 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 55

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58  SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
           S + N   EN    GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C 
Sbjct: 152 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 211
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
           + C A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +
Sbjct: 212 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 270
Query: 172 TLTRTN 177
           TLT  +
Sbjct: 271 TLTSAD 276

>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 76  VDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAIADTGTSLIIGPSKVI 132
           +D   +VG+ TY PV++KGYWQF +  + +  +   +C+  C AIAD+GTSL+ GP+ +I
Sbjct: 213 MDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAII 272
Query: 133 AELNKLIGA 141
            E+N+ IGA
Sbjct: 273 TEINEKIGA 281

>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSN-CQAIADTGTSLI 125
           GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C + C A+ DTG S I
Sbjct: 3   GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYI 62
Query: 126 IGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
            G +  I +L + +GA         V C+    +P++   LGGK +TLT  +
Sbjct: 63  SGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEYTLTSAD 113

>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 69  GEIMFGGVDKDKFVGDITYSPVSR----KGYWQFGVESIKIEKNV-YCSNCQAIADTGTS 123
           GE+ FG  D  K+ G ITY+P++       YW    +SI+   +    S+   I DTGT+
Sbjct: 158 GELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSILSSTAGIVDTGTT 216
Query: 124 LIIGPSKVIAELNKLIGAVPLAN-GPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           L +  S   A+  K  GAV   N G  ++       + ++   +GG+ F LT
Sbjct: 217 LTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELT 268

>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQ------AI 117
           S  NGG ++ GG++   + GDI Y+P+  + Y+Q  +  ++I       +C+      AI
Sbjct: 165 SGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAI 224
Query: 118 ADTGTSLIIGPSKVI 132
            D+GT+L+  P KV 
Sbjct: 225 VDSGTTLLRLPQKVF 239

>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 77  DKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL 135
           D  KF G +T  P+ + +G+W   V+   +  +   S+   I DTGT+L+I P+ + A +
Sbjct: 175 DSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASV 234
Query: 136 NKLIGAVPLANGPAKVDCDNLDKMPNV 162
            +  GA    +G   + CD     P V
Sbjct: 235 ARAYGASDNGDGTYTISCDTSRFKPLV 261

>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 56  GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQ 115
            +S + N+ D + G+I+FGGVD  K+ G +T  PV+     +  + SI  +     +N  
Sbjct: 155 AYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNAD 214
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGA 141
            + D+GT++         +  +++GA
Sbjct: 215 VVLDSGTTITYFSQSTADKFARIVGA 240

>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
          +YYG +++GTP ++F + FDTGSS+LWI S  C+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT 49

>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 77  DKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL 135
           D  KF G +T  P+ + +G+W   V+   +  +   S+   I DTGT+L+I P+ + A +
Sbjct: 175 DSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASV 234
Query: 136 NKLIGAVPLANGPAKVDCDNLDKMPNV 162
            +  GA    +G   + CD     P V
Sbjct: 235 ARAYGASDNGDGTYTISCDTSAFKPLV 261

>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 8   QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
            +YG   +GT  Q F  IFDTGS+NLW+PS +C   +I CS          H  +AS   
Sbjct: 15  MFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD--SIGCST--------KHLYDASASK 64
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESI 103
             E       KD    +I+Y   + +GY+   V S+
Sbjct: 65  SYE-------KDGTKVEISYGSGTVRGYFSKDVISL 93

>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 65  DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSL 124
           D++ G +  GG++ D + G +TY  ++   YWQ  ++ I   K V      A+ D+GTS 
Sbjct: 162 DKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDLD-IHFGKYV-MQKANAVVDSGTST 219
Query: 125 IIGPSKVIAELNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
           I  P+  + +  + +  + +   P  V  CDN D +P ++       +TL
Sbjct: 220 ITAPTSFLNKFFRDMNVIKVPFLPLYVTTCDN-DDLPTLEFHSRNNKYTL 268

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSIL 43
            YYG   +G   Q+F  IFDTGS+NLW+PS  C+ +
Sbjct: 21 VMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTI 57

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 65  DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVE----SIKIEKNVYCSNCQAIADT 120
           D++ G +  GG++   + G +TY  ++   YWQ  ++    ++ +EK        AI D+
Sbjct: 169 DKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEK------ATAIVDS 222
Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           GTS I  P++ + +  + +  V +   P  +   N  K+P ++       +TL
Sbjct: 223 GTSSITAPTEFLNKFFEGLDVVKIPFLPLYITTCNNPKLPTLEFRSATNVYTL 275

>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 31  SNLWIPSQHCSILNI------ACSVDKDKF------------VGHSHFRNASDENGGEIM 72
           +N+W  S    IL I      A   D D                +S + N+++ + G+I+
Sbjct: 112 ANVWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQII 171
Query: 73  FGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI 132
           FGG+DK K+ G +   P++ +     G+ S+ +      +N   + D+GT++      ++
Sbjct: 172 FGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNVLLDSGTTISYFTRSIV 231
Query: 133 AELNKLIGA 141
             +   IGA
Sbjct: 232 RNILYAIGA 240

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
           +YG   +G   Q+F +IFDTGS+NLW+PS+ C+  +I CS          H  ++S   
Sbjct: 15 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SIGCST--------KHLYDSSKSK 64
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYW 96
            E       KD    +ITY   + +G++
Sbjct: 65 SYE-------KDGTKVEITYGSGTVRGFF 86

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 65  DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQ------FGVESIKIEKNVYCSNCQAIA 118
           D++ G +  GG+++  + G++TY  ++   +WQ      FG  S++            I 
Sbjct: 162 DKHSGYLTIGGIEEKFYEGELTYEKLNHDLFWQVDLDVNFGKTSME--------KANVIV 213
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           D+GTS I  P+  I +  K +  + +   P  +   N   MP ++       +TL
Sbjct: 214 DSGTSTITAPTSFINKFFKDLNVIKVPFLPFYITTCNNKDMPTLEFKSANNTYTL 268

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 8   QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
            +YG   +G   Q+F +IFDTGS+NLW+PS+ C+  +  CS+           +N  D +
Sbjct: 63  MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSI-----------KNLYDSS 109
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYW 96
             +      +KD    DITY   + KG++
Sbjct: 110 KSK----SYEKDGTKVDITYGSGTVKGFF 134

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 65  DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSL 124
           D + G +  GG+++  + G+ITY  ++   YWQ  ++ +   K         I D+GT+ 
Sbjct: 210 DVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQT-MEKANVIVDSGTTT 267
Query: 125 IIGPSKVIAELNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
           I  PS+ + +    +  + +   P  V  CDN  +MP ++       +TL
Sbjct: 268 ITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-KEMPTLEFKSANNTYTL 316

>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36  PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
           P+Q  +   N   S+D   F     +      N     FG +D   + G ITY+ VS K 
Sbjct: 137 PTQQKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 191
Query: 94  GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
           G+W++      +    +  ++   IADTGT+L+  P+ V++
Sbjct: 192 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 232

>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin Complexed With Transition State Analogue Inhibitor H261 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36  PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
           P+Q  +   N   S+D   F     +      N     FG +D   + G ITY+ VS K 
Sbjct: 137 PTQQKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 191
Query: 94  GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
           G+W++      +    +  ++   IADTGT+L+  P+ V++
Sbjct: 192 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 232

>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 63  ASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSNCQAIA 118
             D++ G +  GG+++  + G +TY  ++   YWQ  +++    I +EK    +NC  I 
Sbjct: 284 VHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----ANC--IV 337
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           D+GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL
Sbjct: 338 DSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 392

>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
           + +    D++ G +  GG+++  + G +TY  ++   YWQ  +++    I +EK    +N
Sbjct: 155 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEK----AN 210
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           C  I D+GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL
Sbjct: 211 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 268

>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36  PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
           P+Q  +   N   S+D   F     +      N     FG +D   + G ITY+ VS K 
Sbjct: 138 PTQQKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 192
Query: 94  GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
           G+W++      +    +  ++   IADTGT+L+  P+ V++
Sbjct: 193 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 233

>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
           + +    D++ G +  GG+++  + G +TY  ++   YWQ  +++    I +EK    +N
Sbjct: 157 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEK----AN 212
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           C  I D+GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL
Sbjct: 213 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 270

>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
           + +    D++ G +  GG+++  + G +TY  ++   YWQ  +++    I +EK    +N
Sbjct: 155 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----AN 210
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           C  I D+GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL
Sbjct: 211 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 268

>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
           + +    D++ G +  GG+++  + G +TY  ++   YWQ  +++    I +EK    +N
Sbjct: 157 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----AN 212
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           C  I D+GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL
Sbjct: 213 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 270

>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
          +Y   +S+GTP Q+F ++FDTGSS+ W+P + C+
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCT 52

>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 65  DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSNCQAIADT 120
           D++ G +  GG+++  + G +TY  ++   YWQ  +++    I +EK    +NC  I D+
Sbjct: 213 DKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----ANC--IVDS 266
Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
           GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL
Sbjct: 267 GTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 319

>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
          +Y   +S+GTP Q+F ++FDTGSS+ W+P + C
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGC 51

>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed With Pd-135, 040 Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36  PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
           P+Q  +   N   S+D   F     +      N     FG +D   + G ITY+ VS K 
Sbjct: 138 PTQXKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 192
Query: 94  GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
           G+W++      +    +  ++   IADTGT+L+  P+ V++
Sbjct: 193 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 233

>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound To Penicillopepsin: Phosphorus-Containing Peptide Analogues Length = 323

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 73  FGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQA------IADTGTSLI 125
           FG +D  K+ G +TY+ V + +G+W F V+S       Y +  Q+      IADTGT+L+
Sbjct: 167 FGFIDSSKYTGSLTYTGVDNSQGFWSFNVDS-------YTAGSQSGDGFSGIADTGTTLL 219
Query: 126 IGPSKVIAE-LNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
           +    V+++  +++ GA   +N    V DC     +P+  + + G   T+
Sbjct: 220 LLDDSVVSQYYSQVSGAQQDSNAGGYVFDCST--NLPDFSVSISGYTATV 267

>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 57  HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQA 116
           +S + N+     G I+FGGVD  K+ G +    V+        + S+ ++ + +     A
Sbjct: 158 YSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGA 217
Query: 117 IADTGTSLIIGPSKVIAELNKLIGA 141
           + D+GT+L   PS   A+L    GA
Sbjct: 218 LLDSGTTLTYFPSDFAAQLADKAGA 242

>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 192 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 251
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 252 TTNLRLPKKVFEAAVKSIKA 271

>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 194 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 253
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 254 TTNLRLPKKVFEAAVKSIKA 273

>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 192 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 251
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 252 TTNLRLPKKVFEAAVKSIKA 271

>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270

>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 188 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 247
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 248 TTNLRLPKKVFEAAVKSIKA 267

>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 236
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 237 TTNLRLPKKVFEAAVKSIKA 256

>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 174 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 233
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 234 TTNLRLPKKVFEAAVKSIKA 253

>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266

>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 180 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 239
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 240 TTNLRLPKKVFEAAVKSIKA 259

>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 236
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 237 TTNLRLPKKVFEAAVKSIKA 256

>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 249
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 250 TTNLRLPKKVFEAAVKSIKA 269

>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 189 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 248
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 249 TTNLRLPKKVFEAAVKSIKA 268

>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 249
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 250 TTNLRLPKKVFEAAVKSIKA 269

>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 236
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 237 TTNLRLPKKVFEAAVKSIKA 256

>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266

>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 211 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 270
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 271 TTNLRLPKKVFEAAVKSIKA 290

>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254

>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 249
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 250 TTNLRLPKKVFEAAVKSIKA 269

>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 180 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 239
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 240 TTNLRLPKKVFEAAVKSIKA 259

>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 172 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 231
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 232 TTNLRLPKKVFEAAVKSIKA 251

>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254

>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266

>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254

>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 211 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 270
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 271 TTNLRLPKKVFEAAVKSIKA 290

>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 172 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 231
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 232 TTNLRLPKKVFEAAVKSIKA 251

>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 171 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 230
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 231 TTNLRLPKKVFEAAVKSIKA 250

>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254

>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 197 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 256
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 257 TTNLRLPKKVFEAAVKSIKA 276

>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 176 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 235
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 236 TTNLRLPKKVFEAAVKSIKA 255

>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 178 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 237
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 238 TTNLRLPKKVFEAAVKSIKA 257

>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266

>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254

>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 174 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 233
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 234 TTNLRLPKKVFEAAVKSIKA 253

>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 233 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 292
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 293 TTNLRLPKKVFEAAVKSIKA 312

>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 234 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 293
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 294 TTNLRLPKKVFEAAVKSIKA 313

>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68  GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
           GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I       +C      ++I D+G
Sbjct: 234 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 293
Query: 122 TSLIIGPSKVIAELNKLIGA 141
           T+ +  P KV     K I A
Sbjct: 294 TTNLRLPKKVFEAAVKSIKA 313

>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 56  GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNC 114
            +S + N+ D   G+I+FGGVD  K+ G +   PV+     +  + S+++  K +   N 
Sbjct: 154 AYSLYLNSPDSATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNV 213
Query: 115 QAIADTGTSL 124
             + D+GT++
Sbjct: 214 DVLLDSGTTI 223

>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 56  GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNC 114
            +S + N+ D   G+I+FGGVD  K+ G +   PV+     +  + S+++  K +   N 
Sbjct: 154 AYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNV 213
Query: 115 QAIADTGTSL 124
             + D+GT++
Sbjct: 214 DVLLDSGTTI 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	3e-48
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	8e-46
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	4e-21
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	5e-45
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	3e-21
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	8e-45
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	2e-18
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	4e-44
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	3e-21
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	5e-44
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	2e-21
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	1e-43
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	3e-18
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	5e-43
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	3e-21
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	1e-42
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	3e-21
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	3e-42
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	1e-21
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	3e-42
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	2e-21
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	6e-42
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	7e-20
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	6e-42
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	7e-23
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	1e-40
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	2e-17
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	1e-40
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	1e-19
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	3e-40
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	3e-21
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	3e-40
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	7e-20
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	8e-40
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	4e-15
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	5e-38
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	1e-17
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	9e-38
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	1e-18
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	2e-37
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	7e-16
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	2e-36
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	6e-15
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	3e-36
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	3e-19
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	6e-36
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	2e-17
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	9e-36
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	8e-15
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	3e-35
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	5e-22
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	2e-34
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	5e-19
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	5e-34
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	7e-19
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	3e-33
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	8e-20
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	3e-30
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	4e-28
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	1e-21
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	2e-20
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	1e-09
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	3e-07
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	1e-04
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	8e-04

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  155 bits (395), Expect = 3e-48
 Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIA 118
           R+   + GGE+M GG D   + G ++Y  V+RK YWQ  ++ +++   +      C+AI 
Sbjct: 66  RDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIV 125

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSL++GP   + EL K IGAVPL  G   + C+ +  +P + + LGGK + L+
Sbjct: 126 DTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLS 181

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  152 bits (385), Expect = 8e-46
 Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 61  RNASD-ENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSNCQAIA 118
             + D ENGGE  FGG+D+ KF GDIT+ PV RK YW+   E I + ++     +  A  
Sbjct: 158 DTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAI 217

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSLI  PS +   +N  IGA     G   +DC+  D +P++     G NFT+ 
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIG 273

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 28/42 (66%), Positives = 32/42 (76%), Gaps = 2/42 (4%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          AQYY  I+LGTPPQ FKVI DTGSSNLW+PS  C   ++AC 
Sbjct: 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACF 52

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  149 bits (379), Expect = 5e-45
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 59  HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV--YCS-NCQ 115
           +  N    +GG ++FGGVD   + G I ++PV+++ YWQ G+E   I      +CS  CQ
Sbjct: 154 YLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQ 213

Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           AI DTGTSL+  P + ++ L +  GA     G   V+C+++  +P++  I+ G  F L 
Sbjct: 214 AIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLP 272

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 9/55 (16%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
          A Y+G IS+GTPPQ F V+FDTGSSNLW+PS +C   + AC+        HS F 
Sbjct: 12 AAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ--SQACT-------SHSRFN 57

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score =  149 bits (378), Expect = 8e-45
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS-NCQAIAD 119
           R    E+ GEI+FGG D     G+ TY P+     W+F ++ +KI          QAI D
Sbjct: 160 RFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIID 219

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLA---NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           T  ++I+GP   +  +N+ IG V          K+DC  +  +P+V  ++ G+NF ++
Sbjct: 220 TSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 277

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score = 79.7 bits (197), Expect = 2e-18
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 11/58 (18%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNAS 64
           QY G   +G   Q F  +FD+ S N+ + SQ C      C          +  +   
Sbjct: 17 TQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVC---------PNLQKYEK 63

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  147 bits (373), Expect = 4e-44
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNCQAIADT 120
           +    NG E+M GGVD   + G I + PV+ + YWQ  ++ I +  +   C  CQAI DT
Sbjct: 156 SGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQAIVDT 215

Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           GTS I+ P   +A + K IGA     G    +C ++  +P++   + G    L 
Sbjct: 216 GTSKIVAPVSALANIMKDIGASE-NQGEMMGNCASVQSLPDITFTINGVKQPLP 268

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 9/55 (16%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
           +YYG IS+GTPP+ FKVIFDTGSSNLW+ S HCS    ACS        H+ F+
Sbjct: 12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS--AQACS-------NHNKFK 57

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score =  147 bits (373), Expect = 5e-44
 Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 60  FRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAI 117
                +     +  G +D   + G + + PV+ + YWQF V+S+ I   V      CQAI
Sbjct: 155 VYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAI 214

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            DTGTS ++GPS  I  + + IGA     G   +DCDNL  MP V   + GK + LT
Sbjct: 215 LDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLT 271

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 9/55 (16%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
          +QY+G I LGTPPQEF V+FDTGSS+ W+PS +C   + AC         H  F 
Sbjct: 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACK-------NHQRFD 59

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  147 bits (373), Expect = 1e-43
 Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIAD 119
           +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++         CQAI D
Sbjct: 200 SSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVD 259

Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           TGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   + G  + L+
Sbjct: 260 TGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLS 314

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 9/61 (14%)

Query: 1   MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
           + +    +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS  ++ACS        H+ F
Sbjct: 50  LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-------DHNQF 100

Query: 61  R 61
            
Sbjct: 101 N 101

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  145 bits (368), Expect = 5e-43
 Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 3/116 (2%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCS-NCQAIA 118
            N     G E++FGG D   F G + + PV+++ YWQ  +++I++    ++CS  CQAI 
Sbjct: 168 SNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIV 227

Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           DTGTSLI GPS  I +L   IGA P  +G   V+C NL+ MP+V   + G  +TL+
Sbjct: 228 DTGTSLITGPSDKIKQLQNAIGAAP-VDGEYAVECANLNVMPDVTFTINGVPYTLS 282

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 9/55 (16%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
           +Y+GTIS+G+PPQ F VIFDTGSSNLW+PS +C+  + AC         HS F+
Sbjct: 23 MEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT--SPACK-------THSRFQ 68

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  146 bits (370), Expect = 1e-42
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
              D++ G +  GG+++  + G +TY  ++   YWQ  +++     N+       I D+G
Sbjct: 283 PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVG--NIMLEKANCIVDSG 340

Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           TS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL 
Sbjct: 341 TSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLE 393

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score = 88.7 bits (220), Expect = 3e-21
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 7   AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
             +YG   +G   Q F  I DTGS+NLW+PS  C+     C            + 
Sbjct: 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT--TAGCL-------TKHLYD 183

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  144 bits (364), Expect = 3e-42
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSN-CQ 115
           +     S   GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C + C 
Sbjct: 206 NRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL 265

Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +TLT
Sbjct: 266 ALVDTGASYISGSTSSIEKLMEALGAKKRLFD-YVVKCNEGPTLPDISFHLGGKEYTLT 323

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score = 89.4 bits (222), Expect = 1e-21
 Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 5   YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
              QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC         H  F 
Sbjct: 59  MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV-------YHKLFD 108

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  144 bits (364), Expect = 3e-42
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
              D + G +  GG+++  + G+ITY  ++   YWQ  ++               I D+G
Sbjct: 207 PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFG--KQTMEKANVIVDSG 264

Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           T+ I  PS+ + +    +  + +   P  V   +  +MP ++       +TL 
Sbjct: 265 TTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLE 317

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 9/55 (16%)

Query: 7   AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
             +YG   +G   Q+F +IFDTGS+NLW+PS+ C+  +  CS         + + 
Sbjct: 62  IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCS-------IKNLYD 107

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score =  142 bits (359), Expect = 6e-42
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%)

Query: 59  HFRNASDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAI 117
           +   A +  GGE +FGG D  KF G +T  P+ + +G+W   V+   +  +   S+   I
Sbjct: 157 YLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGI 216

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            DTGT+L+I P+ + A + +  GA    +G   + CD       +   + G +F ++
Sbjct: 217 LDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDT-SAFKPLVFSINGASFQVS 272

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score = 83.5 bits (207), Expect = 7e-20
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 10/55 (18%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
           +YYG +++GTP ++F + FDTGSS+LWI S  C+      S       G + + 
Sbjct: 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT---NCGS-------GQTKYD 59

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  142 bits (360), Expect = 6e-42
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSN-CQ 115
           +     S   GG+I+ GG D   + G+  Y  + + G WQ  ++ + +    + C + C 
Sbjct: 163 NRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL 222

Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +TLT
Sbjct: 223 ALVDTGASYISGSTSSIEKLMEALGAKKRLFD-YVVKCNEGPTLPDISFHLGGKEYTLT 280

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score = 92.0 bits (229), Expect = 7e-23
 Identities = 28/42 (66%), Positives = 32/42 (76%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
           QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC 
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV 59

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score =  139 bits (351), Expect = 1e-40
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
           N+     G I+FGGVD  K+ G +    V+        + S+ ++ + +     A+ D+G
Sbjct: 163 NSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGALLDSG 222

Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAK----VDCDNLDKMPNVDIILGGKNFTLT 174
           T+L   PS   A+L    GA  +     +    +DC+       V     G   T+ 
Sbjct: 223 TTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVP 279

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC-SILNIACS 48
              Y   +S+G+  Q+  VI DTGSS+ W+   +      + C 
Sbjct: 10 EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCK 54

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score =  138 bits (350), Expect = 1e-40
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSN-CQAIADTG 121
                G   FG +D     G + Y+PV + +G+W+F      +       N    IADTG
Sbjct: 162 RHGQNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTG 221

Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           T+L++    V+      + +    N    V  D  + +P+    +G    T+ 
Sbjct: 222 TTLLLLDDNVVDAYYANVQSAQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIP 274

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 24/95 (25%)

Query: 7   AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNAS-- 64
           ++Y  ++S+GTP Q   + FDTGSS+LW+ S        + +       GH+ +  +   
Sbjct: 15  SEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP--KSSAT-------GHAIYTPSKSS 65

Query: 65  ---DENG---------GEIMFGGVDKDKF-VGDIT 86
                +G         G    G V  DK  +G  +
Sbjct: 66  TSKKVSGASWSISYGDGSSSSGDVYTDKVTIGGFS 100

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  140 bits (354), Expect = 3e-40
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
              ++N G +  GG+++  F G + Y  ++    WQ  ++      NV       I D+ 
Sbjct: 282 PPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLDVHFG--NVSSKKANVILDSA 339

Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           TS+I  P++   +  +      +      V      K+P ++     K +TL 
Sbjct: 340 TSVITVPTEFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLE 392

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score = 88.7 bits (220), Expect = 3e-21
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)

Query: 7   AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
              +G   LG   Q+F  +F T SSN+W+PS  C+  + +C          +H+ 
Sbjct: 137 VLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT--SESCE-------SKNHYD 182

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score =  137 bits (348), Expect = 3e-40
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSR----KGYWQFGVESIKIEKNVYCSNCQA 116
             +     GE+ FG  D  K+ G ITY+P++       YW               S+   
Sbjct: 150 TTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAG 209

Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVPLA-NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           I DTGT+L +  S   A+  K  GAV     G  ++       + ++   +GG+ F LT
Sbjct: 210 IVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELT 268

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score = 83.9 bits (208), Expect = 7e-20
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
              Y   + +G+P   + ++ DTGSSN W+ +    
Sbjct: 10 QLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSY 46

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score =  136 bits (344), Expect = 8e-40
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 1/112 (0%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGT 122
                G   FG  D  K+ G ITY+ V + +G+W F  +   I  +    +   IADTGT
Sbjct: 158 KHNAPGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGT 217

Query: 123 SLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           +L++    ++    + +      +        +   +P+  + +G    T+ 
Sbjct: 218 TLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVP 269

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 24/96 (25%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNA 63
          S   +Y   +++G       + FDTGS++LW+ S      +   S       GH ++   
Sbjct: 12 SNDEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTP--SSERS-------GHDYYTPG 60

Query: 64 S---DENG---------GEIMFGGVDKDKF-VGDIT 86
          S     +G         G    G V KDK  VG ++
Sbjct: 61 SSAQKIDGATWSISYGDGSSASGDVYKDKVTVGGVS 96

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score =  132 bits (333), Expect = 5e-38
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
           N+ D + G+I+FGGVD  K+ G +T  PV+     +  + SI  +     +N   + D+G
Sbjct: 161 NSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSG 220

Query: 122 TSLIIGPSKVIAELNKLIGAVPLA-NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           T++         +  +++GA   + N   ++   +L      +    G   T+ 
Sbjct: 221 TTITYFSQSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFD-QGVKITVP 273

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 13/57 (22%), Positives = 20/57 (35%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
              Y   I +G+  Q+  V+ DTGSS+LW+                +       F 
Sbjct: 10 EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFD 66

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score =  131 bits (331), Expect = 9e-38
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCS-NCQAIADTG 121
                G   FG +D   + G ITY+ V +++G+W++      +    + S +   IADTG
Sbjct: 161 GYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTG 220

Query: 122 TSLIIGPSKVIAELNKLIGAVPLAN--GPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           T+L+  P+ V++     +     ++  G     C     +P+    +G     + 
Sbjct: 221 TTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSA--TLPSFTFGVGSARIVIP 273

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSI 42
            Y   + +GTP Q   + FDTGSS+LW+ S   + 
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA 50

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score =  130 bits (329), Expect = 2e-37
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
           N+++ + G+I+FGG+DK K+ G +   P++ +     G+ S+ +      +N   + D+G
Sbjct: 161 NSAEASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNVLLDSG 220

Query: 122 TSLIIGPSKVIAELNKLIGAVPL----ANGPAKVDCDNLDKMPNVDI-ILGGKNFTLT 174
           T++      ++  +   IGA        N     DC        +D         ++ 
Sbjct: 221 TTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADC---KTSGTIDFQFGNNLKISVP 275

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score = 72.8 bits (179), Expect = 7e-16
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
              Y   I++G+  Q+  VI DTGSS+LWIP  +   +        D       +
Sbjct: 10 EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSY 65

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score =  127 bits (321), Expect = 2e-36
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCS-NCQAIADTG 121
             +  G   FG +D  K+ G ITY+   S +GYW F  +   I      S    AIADTG
Sbjct: 157 KHDAPGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSSSGFSAIADTG 216

Query: 122 TSLIIGPSKVIAELNKLIGAVPLA--NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           T+LI+   ++++   + +     +   G     C     +P+  +++G     + 
Sbjct: 217 TTLILLDDEIVSAYYEQVSGAQESYEAGGYVFSCST--DLPDFTVVIGDYKAVVP 269

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 26/97 (26%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNA 63
          +   +Y   +++G       + FDTGS++LW+ S      +   +       GH  +   
Sbjct: 11 NNDEEYLTPVTVGK--STLHLDFDTGSADLWVFSDELP--SSEQT-------GHDLY-TP 58

Query: 64 SD----ENG---------GEIMFGGVDKDKF-VGDIT 86
          S      +G         G    G V +D   VG +T
Sbjct: 59 SSSATKLSGYSWDISYGDGSSASGDVYRDTVTVGGVT 95

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score =  128 bits (323), Expect = 3e-36
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 56  GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---- 111
           G       S  NGG ++ GG++   + GDI Y+P+  + Y+Q  +  ++I          
Sbjct: 157 GAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCR 216

Query: 112 --SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAK------------VDCDNLD 157
             +  +AI D+GT+L+  P KV   + + +    L    +                    
Sbjct: 217 EYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWS 276

Query: 158 KMPNVDIILGGKNFTLT 174
             P + I L  +N + +
Sbjct: 277 YFPKISIYLRDENSSRS 293

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
            YY  + +GTPPQ+ +++ DTGSSN  +     
Sbjct: 13 RGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPH 46

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score =  126 bits (319), Expect = 6e-36
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 62  NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS-NCQAIADT 120
           N+ D   G+I+FGGVD  K+ G +   PV+     +  + S+++      + N   + D+
Sbjct: 160 NSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDS 219

Query: 121 GTSLIIGPSKVIAELNKLIGAVPLA----NGPAKVDCDNLDKMPNVDI-ILGGKNFTLT 174
           GT++      +  ++ K            N   +VDC   +   +V          ++ 
Sbjct: 220 GTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC---NLSGDVVFNFSKNAKISVP 275

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
          + Q  Y   I++G+  Q+  VI DTGSS+LW+P  +            D       +
Sbjct: 9  NEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTY 65

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score =  125 bits (317), Expect = 9e-36
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGT 122
             +  G   FG +D  K+ G +TY+ V + +G+W F V+S     +        IADTGT
Sbjct: 158 KHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTA-GSQSGDGFSGIADTGT 216

Query: 123 SLIIGPSKVIAELNKLIGAVPLANGPA--KVDCDNLDKMPNVDIILGGKNFTLT 174
           +L++    V+++    +      +       DC     +P+  + + G   T+ 
Sbjct: 217 TLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCST--NLPDFSVSISGYTATVP 268

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 26/94 (27%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD- 65
           +Y   +++G       + FDTGS++LW+ S          S       GHS + N S  
Sbjct: 15 EEYITPVTIGG--TTLNLNFDTGSADLWVFSTELP--ASQQS-------GHSVY-NPSAT 62

Query: 66 ---ENG---------GEIMFGGVDKDKF-VGDIT 86
              +G         G    G V  D   VG +T
Sbjct: 63 GKELSGYTWSISYGDGSSASGNVFTDSVTVGGVT 96

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239

 Score =  122 bits (308), Expect = 3e-35
 Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 3/84 (3%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAI 117
           RN  +E GGE++FGG+D + F GD TY PV+ + YWQFG+  + I  +   +C+  CQA 
Sbjct: 155 RNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAF 214

Query: 118 ADTGTSLIIGPSKVIAELNKLIGA 141
           AD+GTSL+ GP+ ++ ++N  IGA
Sbjct: 215 ADSGTSLLSGPTAIVTQINHAIGA 238

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239

 Score = 88.1 bits (219), Expect = 5e-22
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 8/55 (14%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
            Y+G I +GTPPQ+F VIFDTGSS LW+PS  C   + AC         HS + 
Sbjct: 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCI-NSKACR-------AHSMYE 59

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score =  124 bits (313), Expect = 2e-34
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 48  SVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK 107
           S+         +        GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I  
Sbjct: 213 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEING 272

Query: 108 NVYC------SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG------------PA 149
                     +  ++I D+GT+ +  P KV     K I A                    
Sbjct: 273 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCW 332

Query: 150 KVDCDNLDKMPNVDIILGGKNFTLTRT 176
           +      +  P + + L G+    +  
Sbjct: 333 QAGTTPWNIFPVISLYLMGEVTNQSFR 359

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score = 82.3 bits (203), Expect = 5e-19
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 1   MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
           +R      YY  +++G+PPQ   ++ DTGSSN  + +   
Sbjct: 68  LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH 107

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score =  122 bits (308), Expect = 5e-34
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 48  SVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK 107
           S+         +        GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I  
Sbjct: 160 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEING 219

Query: 108 NVYC------SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG------------PA 149
                     +  ++I D+GT+ +  P KV     K I A                    
Sbjct: 220 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCW 279

Query: 150 KVDCDNLDKMPNVDIILGGKNFT 172
           +      +  P + + L G+   
Sbjct: 280 QAGTTPWNIFPVISLYLMGEVTN 302

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score = 81.5 bits (201), Expect = 7e-19
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
          +R      YY  +++G+PPQ   ++ DTGSSN  + +   
Sbjct: 15 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH 54

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score =  119 bits (301), Expect = 3e-33
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPVSRKG----YWQFGVESIKIE-KNVYCSN--CQA 116
           +++ GG+++FGGV+     GDI Y+ V +      +W   V  +KI+  +    +     
Sbjct: 175 TNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAF 234

Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVP-LANGPAKVDCDNL-DKMPNVDIILGGKNFTLT 174
             DTGT+  I PS    ++ K        +     V C    D      ++L     +  
Sbjct: 235 TIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSD 294

Query: 175 RTN 177
             +
Sbjct: 295 TID 297

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score = 84.0 bits (208), Expect = 8e-20
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
           +Y   +S+GTP Q+F ++FDTGSS+ W+P + C   +  C        G   F 
Sbjct: 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCD-NSEGCV-------GKRFFD 64

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score =  113 bits (285), Expect = 3e-30
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 7/104 (6%)

Query: 61  RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV--YCSN-CQAI 117
           R+  +  GGEI+FGG+D   +VG+ TY PV++KGYWQF +  + +      +C+  C AI
Sbjct: 198 RHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAI 257

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPN 161
           AD+GTSL+ GP+ +I E+N+ IG    A G    +C  +     
Sbjct: 258 ADSGTSLLAGPTAIITEINEKIG----AAGVVSQECKTIVSQYG 297

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score =  108 bits (270), Expect = 4e-28
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 14  SLGTPPQEFKVIFDTGSSNLWIPSQHCSILN----------IACSVDKDKFVGHSHFRNA 63
           S G        I D+G+S L  P+   + +N            C     ++         
Sbjct: 246 STGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQ-QILDLL 304

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIADTGT 122
             E   + +   V    F G    S   R       V+S  +  +  CS    A+     
Sbjct: 305 LAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQN 364

Query: 123 SLIIGPSK--VIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            L    ++  ++  +N+L   +P   G + VDC +L  MP+++  +GGK F L 
Sbjct: 365 QLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALK 418

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score = 89.6 bits (222), Expect = 1e-21
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
          AQY+G I +GTPPQ+F VIFDTGSSNLW+PS  C   +IAC         HS ++
Sbjct: 52 AQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCY-FSIACY-------LHSRYK 98

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97

 Score = 80.1 bits (198), Expect = 2e-20
 Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 7/55 (12%)

Query: 7  AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
          AQYYG I +GTPPQ F V+FDTGSSNLW+PS HC +L+IAC         H  + 
Sbjct: 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW-------IHHKYN 60

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
           ++  +   TP  +  V+ D   ++LW+  +  
Sbjct: 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ 54

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
          QY  TI+  TP     ++ D G   LW+      
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNY 54

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 151 VDCDNLDKMPNVDIILGGKNFTLT 174
           VDC+ L  MPNV   +GGK F LT
Sbjct: 5   VDCNTLSSMPNVSFTIGGKKFGLT 28

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 4/34 (11%), Positives = 7/34 (20%), Gaps = 5/34 (14%)

Query: 8  QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
           Y      G       ++ D     +W       
Sbjct: 15 LYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	100.0
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	100.0
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	100.0
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	100.0
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	100.0
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	100.0
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	100.0
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	100.0
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	100.0
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	100.0
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	100.0
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	100.0
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	100.0
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	100.0
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	100.0
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	100.0
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	100.0
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	100.0
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	100.0
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	100.0
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	100.0
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	100.0
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	100.0
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	100.0
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	100.0
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	100.0
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	100.0
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	100.0
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	100.0
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	100.0
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	100.0
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	100.0
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	99.97
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	99.95
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.93
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.67
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	98.05
2hs1_A	99	HIV-1 protease; ultra-high resolution active site	93.12
1fmb_A	104	EIAV protease; hydrolase (acid proteinase), RNA-di	92.3
3liy_A	116	Protease; hydrolase, hydrolase-hydrolase inhibitor	92.19
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	91.8
3ec0_A	99	Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1	91.6
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	89.58
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	87.9
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	87.89
2hah_A	116	Protease, retropepsin; retroviral, aspartyl, hydro	87.8
3sqf_A	114	Protease; folded monomer, retropepsin, D-type retr	87.28
3slz_A	132	GAG-Pro-POL polyprotein; beta sheet and dimer, pro	85.31
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	84.23
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	82.39
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	82.11
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	81.64
2rsp_A	124	RSV protease; hydrolase(aspartyl proteinase); 2.00	81.41

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=100.00  E-value=1.8e-42  Score=278.52  Aligned_cols=175  Identities=39%  Similarity=0.841  Sum_probs=152.6

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||+|.|++||||+++||+|..|.  +..|..|.                             
T Consensus        50 l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~  127 (370)
T 3psg_A           50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGI  127 (370)
T ss_dssp             TGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEE
T ss_pred             ceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCC--CcccCCCCCCCCccCcCcEECCcEEEEEeCCceEEEE
Confidence            68999999999999999999999999999999999999997  55777654                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCCCCc
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDENGG   69 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~~~G   69 (177)
                         |                            ++||                            +++|   +.......|
T Consensus       128 ~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G  207 (370)
T 3psg_A          128 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS  207 (370)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CE
T ss_pred             EEEEEEeeCCcccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCe
Confidence               1                            2455                            3455   222345689


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG  147 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g  147 (177)
                      +|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+.  .+..|++||||+++++|++++++|.+++++.....|
T Consensus       208 ~l~fGg~D~~~y~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g  287 (370)
T 3psg_A          208 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDG  287 (370)
T ss_dssp             EEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTC
T ss_pred             EEEEEeeChHhcCCcceeecccccceeEEEEeEEEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCC
Confidence            999999999999999999999999999999999999998764  778999999999999999999999999999866788


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+...++|+|+|+|+|++++||+++
T Consensus       288 ~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~  317 (370)
T 3psg_A          288 EMVISCSSIDSLPDIVFTIDGVQYPLSPSA  317 (370)
T ss_dssp             CEECCGGGGGGCCCEEEEETTEEEEECHHH
T ss_pred             cEEEECCCcccCCcEEEEECCEEEEECHHH
Confidence            999999988889999999999999999864

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=100.00  E-value=2e-41  Score=273.35  Aligned_cols=176  Identities=39%  Similarity=0.773  Sum_probs=151.8

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||+|.|++||||+++||+|..|...+..|..|.                             
T Consensus        55 l~n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~  134 (383)
T 2x0b_A           55 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGF  134 (383)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             eeecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCccEEEE
Confidence            568899999999999999999999999999999999999973234564433                             


Q ss_pred             ---C---------------------------cCCC----------------------------cccc---ccCCCC----
Q psy3212          52 ---D---------------------------KFVG----------------------------HSHF---RNASDE----   66 (177)
Q Consensus        52 ---D---------------------------~fdG----------------------------~~~F---~~~~~~----   66 (177)
                         |                           ++||                            +++|   +.....    
T Consensus       135 ~~~Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~  214 (383)
T 2x0b_A          135 LSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQS  214 (383)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----
T ss_pred             EEeeEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccC
Confidence               1                           3455                            3555   222222    


Q ss_pred             CCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEe-c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          67 NGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY-C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      ..|+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+ + .+..|++||||+++++|.+++++|.+++++.. 
T Consensus       215 ~~G~l~fGg~d~~~y~G~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-  293 (383)
T 2x0b_A          215 LGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-  293 (383)
T ss_dssp             CCEEEEESSCCGGGEEEEEEEEEBSSTTSCEEEECEEEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-
T ss_pred             CCcEEEECCcChHHcCCceEEEEcCCCceEEEEEeEEEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-
Confidence            38999999999999999999999999999999999999999874 4 77899999999999999999999999999887 


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ..|.|.++|+..+.+|+|+|+|+|++++|||++
T Consensus       294 ~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~  326 (383)
T 2x0b_A          294 RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSAD  326 (383)
T ss_dssp             CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHH
T ss_pred             cCCcEEEeccccccCceEEEEECCEEEEECHHH
Confidence            788899999988889999999999999999864

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=100.00  E-value=1e-40  Score=263.26  Aligned_cols=175  Identities=39%  Similarity=0.764  Sum_probs=149.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||+++|++||||+++||+|..|.  +..|..+.                             
T Consensus         5 l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~   82 (320)
T 4aa9_A            5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCK--SNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGSMEGF   82 (320)
T ss_dssp             ---CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             ceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCC--ccccCCCCCCCCCCCcCeEcCCcEEEEEECCcEEEEE
Confidence            68999999999999999999999999999999999999997  33454333                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc-c-cCCCCCCcE
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF-R-NASDENGGE   70 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F-~-~~~~~~~G~   70 (177)
                         |                            +++|                            +++| . .......|.
T Consensus        83 ~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~G~  162 (320)
T 4aa9_A           83 LGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSM  162 (320)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSSSSCCE
T ss_pred             EEEEEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCCCCCCeE
Confidence               1                            2344                            3345 1 111257899


Q ss_pred             EEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCC
Q psy3212          71 IMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP  148 (177)
Q Consensus        71 l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~  148 (177)
                      |+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+.  ....+++||||++++||++++++|++++++.....|.
T Consensus       163 l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~  242 (320)
T 4aa9_A          163 LTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGE  242 (320)
T ss_dssp             EEETCCCGGGEEEEEEEEECSSBTTBEEEECEEEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSC
T ss_pred             EEEcccCHHHccCceEEEEcccCCceEEEEeEEEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCc
Confidence            99999999999999999999999999999999999998775  6789999999999999999999999999988666789


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |.++|+....+|+|+|+|+|++++||+++
T Consensus       243 ~~~~C~~~~~~p~i~f~f~g~~~~l~~~~  271 (320)
T 4aa9_A          243 FDVNCGNLRSMPTVVFEINGRDYPLSPSA  271 (320)
T ss_dssp             EEECGGGGGGCCCEEEEETTEEEEECHHH
T ss_pred             EEEeCCCCCcCceEEEEECCEEEEECHHH
Confidence            99999987789999999999999999864

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=100.00  E-value=5.8e-40  Score=259.46  Aligned_cols=175  Identities=41%  Similarity=0.766  Sum_probs=149.3

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.+.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus         8 l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~   85 (323)
T 3cms_A            8 LTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGI   85 (323)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             eEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCC--cccccCCCCCCCccCCCeEECCcEEEEEeCCCCeEEE
Confidence            57889999999999999999999999999999999999995  33554332                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc--ccCCCCCCcE
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF--RNASDENGGE   70 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F--~~~~~~~~G~   70 (177)
                         |                            +++|                            +++|  ........|.
T Consensus        86 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~G~  165 (323)
T 3cms_A           86 LGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM  165 (323)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEE
T ss_pred             EEEEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCCCCCEE
Confidence               1                            2344                            3445  1112223499


Q ss_pred             EEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCC
Q psy3212          71 IMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP  148 (177)
Q Consensus        71 l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~  148 (177)
                      |+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+.  ....+++||||+++++|++++++|.+++++.....+.
T Consensus       166 l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~  245 (323)
T 3cms_A          166 LTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGE  245 (323)
T ss_dssp             EEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTE
T ss_pred             EEECCCChhhccCceEEEECccCCeEEEEEeeEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCc
Confidence            99999999999999999999988999999999999998764  6789999999999999999999999999888555788


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |.++|+..+.+|+|+|+|+|++++|||++
T Consensus       246 ~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  274 (323)
T 3cms_A          246 FDIDCDNLSYMPTVVFEINGKMYPLTPSA  274 (323)
T ss_dssp             EEECTTCTTTSCCEEEEETTEEEEECHHH
T ss_pred             EEEECCCCccCceEEEEECCEEEEECHHH
Confidence            99999988889999999999999999864

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=100.00  E-value=8e-40  Score=259.23  Aligned_cols=175  Identities=45%  Similarity=0.779  Sum_probs=151.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.+.+|+++|+||||||+++|++||||+++||+|..|.  +..|..+.                             
T Consensus         7 l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~   84 (329)
T 1dpj_A            7 LTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGY   84 (329)
T ss_dssp             CEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             eeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCC--CcccCCcCcCCcccCcCeEECCcEEEEEECCceEEEE
Confidence            67889999999999999999999999999999999999997  22353332                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCC---CC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNAS---DE   66 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~---~~   66 (177)
                         |                            ++||                            +++|   +...   ..
T Consensus        85 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~  164 (329)
T 1dpj_A           85 ISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTE  164 (329)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCS
T ss_pred             EEEEEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCC
Confidence               1                            2344                            3455   2111   23


Q ss_pred             CCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCC
Q psy3212          67 NGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLA  145 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~  145 (177)
                      ..|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+. .+..+++||||+++++|++++++|++++++....
T Consensus       165 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~  244 (329)
T 1dpj_A          165 NGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGW  244 (329)
T ss_dssp             SSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECT
T ss_pred             CCcEEEEcCCChhhcCCceEEEEcCCCceEEEEeeeEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCC
Confidence            479999999999999999999999988999999999999999887 7889999999999999999999999999988666


Q ss_pred             CCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         146 NGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       146 ~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .+.|.++|+....+|+|+|+|+|++++|||++
T Consensus       245 ~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  276 (329)
T 1dpj_A          245 TGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYD  276 (329)
T ss_dssp             TSSEEECGGGGGGCCCEEEEETTEEEEECTTT
T ss_pred             CCeEEEECCCCCcCCcEEEEECCEEEEECHHH
Confidence            88999999987789999999999999999986

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=100.00  E-value=2.3e-39  Score=258.76  Aligned_cols=174  Identities=45%  Similarity=0.901  Sum_probs=149.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus        17 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~   94 (351)
T 1tzs_A           17 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT--SPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGI   94 (351)
T ss_dssp             TGGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCEEEEE
T ss_pred             ceecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC--ccccCCCCcCCcccCcceEECCCEEEEEeCCCCeEEE
Confidence            57889999999999999999999999999999999999997  34565432                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCC--CC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASD--EN   67 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~--~~   67 (177)
                         |                            .+||                            +++|   +....  ..
T Consensus        95 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~  174 (351)
T 1tzs_A           95 IGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGA  174 (351)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CT
T ss_pred             EEEeEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCC
Confidence               1                            2344                            3445   22221  23


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEe-c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCC
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY-C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLA  145 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~  145 (177)
                      .|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+ . ....+++||||+++++|.+++++|.+++++....
T Consensus       175 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~  254 (351)
T 1tzs_A          175 GSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD  254 (351)
T ss_dssp             TCEEEETSCCGGGBCSCCEEEECSEETTEEEEEEEEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS
T ss_pred             CCEEEECCCCHHHcCCceEEEecCCCceEEEEeCEEEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCcccC
Confidence            8999999999999999999999998899999999999999875 3 7789999999999999999999999999888544


Q ss_pred             CCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         146 NGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       146 ~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                       |.|.++|+....+|+|+|+|+|++++||+++
T Consensus       255 -g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  285 (351)
T 1tzs_A          255 -GEYAVECANLNVMPDVTFTINGVPYTLSPTA  285 (351)
T ss_dssp             -SSEEECGGGGGGSCCEEEEETTEEEEECTTT
T ss_pred             -CeEEEeCCCCccCCcEEEEECCEEEEECHHH
Confidence             8899999987789999999999999999985

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=100.00  E-value=1.1e-39  Score=259.30  Aligned_cols=176  Identities=39%  Similarity=0.772  Sum_probs=149.0

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||+++|++||||+++||+|..|......|..+.                             
T Consensus        12 l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~   91 (341)
T 3k1w_A           12 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGF   91 (341)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             ceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcEEEEE
Confidence            578899999999999999999999999999999999999974333454332                             


Q ss_pred             ---C---------------------------cCCC----------------------------cccc---ccCCC----C
Q psy3212          52 ---D---------------------------KFVG----------------------------HSHF---RNASD----E   66 (177)
Q Consensus        52 ---D---------------------------~fdG----------------------------~~~F---~~~~~----~   66 (177)
                         |                           +++|                            +++|   +....    .
T Consensus        92 ~~~D~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~  171 (341)
T 3k1w_A           92 LSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQS  171 (341)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----
T ss_pred             EEEEEEEECCceeeEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCC
Confidence               1                           2344                            3445   22211    3


Q ss_pred             CCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEe-c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          67 NGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY-C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      ..|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+ . ....+++||||+++++|++++++|++++++...
T Consensus       172 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~  251 (341)
T 3k1w_A          172 LGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKR  251 (341)
T ss_dssp             CCEEEEESSCCGGGEEEEEEEEECSSTTSCEEEECCEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC
T ss_pred             CCCEEEECccChHHccCceEEEecCCCCEEEEEEeEEEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec
Confidence            48999999999999999999999999999999999999999964 3 778999999999999999999999999988855


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ..| |.+||+....+|+|+|+|+|++++|+|++
T Consensus       252 ~~g-~~~~C~~~~~~p~i~f~f~g~~~~l~~~~  283 (341)
T 3k1w_A          252 LFD-YVVKCNEGPTLPDISFHLGGKEYTLTSAD  283 (341)
T ss_dssp             SSC-EEEEGGGGGGCCCEEEEETTEEEEECHHH
T ss_pred             CCC-eEEeCCCCCcCCcEEEEECCEEEEECHHH
Confidence            556 99999987789999999999999999864

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=100.00  E-value=7.3e-40  Score=258.96  Aligned_cols=174  Identities=41%  Similarity=0.797  Sum_probs=148.9

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.+.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus         6 l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~   83 (324)
T 1am5_A            6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS--AQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGI   83 (324)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCC--SHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             eecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC--cccccCCCcCCCccCCCeEeCCcEEEEEECCCCeEEE
Confidence            56889999999999999999999999999999999999996  33453322                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCCCCc
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDENGG   69 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~~~G   69 (177)
                         |                            ++||                            +++|   +.......|
T Consensus        84 ~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G  163 (324)
T 1am5_A           84 LGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGS  163 (324)
T ss_dssp             EEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCE
T ss_pred             EEECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCc
Confidence               1                            1244                            3444   222234589


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP  148 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~  148 (177)
                      .|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+. ....+++||||+++++|++++++|++++++. ...|.
T Consensus       164 ~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~~~g~  242 (324)
T 1am5_A          164 EVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS-ENQGE  242 (324)
T ss_dssp             EEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE-ECCCC
T ss_pred             EEEECccCHHHcCCceEEEecCCCcEEEEEEeEEEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc-ccCCc
Confidence            999999999999999999999988999999999999998764 4489999999999999999999999999887 56788


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |.++|+....+|+|+|+|+|++++|||++
T Consensus       243 ~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  271 (324)
T 1am5_A          243 MMGNCASVQSLPDITFTINGVKQPLPPSA  271 (324)
T ss_dssp             EECCTTSSSSSCCEEEEETTEEEEECHHH
T ss_pred             EEEeCCCcccCCcEEEEECCEEEEECHHH
Confidence            99999987889999999999999999864

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=100.00  E-value=8.1e-39  Score=253.46  Aligned_cols=174  Identities=41%  Similarity=0.814  Sum_probs=147.0

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+ +.+.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus         7 l~-~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~   83 (329)
T 1htr_B            7 MA-YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ--SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGF   83 (329)
T ss_dssp             GG-GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             eE-EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCC--CcccCCCCcCCCccCCCeEECCcEEEEEeCCCCeEEE
Confidence            45 78899999999999999999999999999999999996  33454332                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCC-CC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDE-NG   68 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~-~~   68 (177)
                         |                            .++|                            +++|   +..... ..
T Consensus        84 ~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~  163 (329)
T 1htr_B           84 FGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSG  163 (329)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEE
T ss_pred             EEeeeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCC
Confidence               1                            1234                            3444   222222 27


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEe--c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY--C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLA  145 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~--~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~  145 (177)
                      |.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+  . ....+++||||++++||++++++|++++++....
T Consensus       164 G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~  243 (329)
T 1htr_B          164 GAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDE  243 (329)
T ss_dssp             EEEEESSCCGGGEEEEEEEEEBCSSSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECT
T ss_pred             cEEEEcccCHHHcCCceEEEECCCCceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCeecC
Confidence            999999999999999999999998899999999999999875  3 6789999999999999999999999999888556


Q ss_pred             CCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         146 NGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       146 ~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.|.++|+....+|+|+|+|+|++++|||++
T Consensus       244 ~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~  275 (329)
T 1htr_B          244 YGQFLVNCNSIQNLPSLTFIINGVEFPLPPSS  275 (329)
T ss_dssp             TSCEEECGGGGGGSCCEEEEETTEEEEECHHH
T ss_pred             CCeEEEeCCCcccCCcEEEEECCEEEEECHHH
Confidence            78899999977789999999999999999864

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=100.00  E-value=3.1e-38  Score=259.15  Aligned_cols=172  Identities=22%  Similarity=0.457  Sum_probs=148.6

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus       131 L~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~--s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs~~G~  208 (451)
T 3qvc_A          131 LKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT--SESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGI  208 (451)
T ss_dssp             GGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCC--SGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEEEEEE
T ss_pred             eeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCC--ccccCCCCCCCCCCCcccccCCCEEEEEECCCEEEEE
Confidence            57889999999999999999999999999999999999996  45676544                             


Q ss_pred             ---C-----------------c------------CCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-----------------K------------FVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-----------------~------------fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                 .            +||                            +++|   +.......
T Consensus       209 ~~~Dtv~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~  288 (451)
T 3qvc_A          209 FSKDLVTIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNK  288 (451)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTE
T ss_pred             EEEEEEEECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCC
Confidence               1                 1            344                            3445   22333458


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANG  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g  147 (177)
                      |.|+|||+|+++|.|++.|+|+.+..+|.|.++ |+++++ ......+++||||+++++|++++++|++++++. ....|
T Consensus       289 G~l~fGgiD~s~y~G~l~~~pv~~~~~w~v~l~-I~Vgg~-~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~~~g  366 (451)
T 3qvc_A          289 GYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLD-VHFGNV-SSKKANVILDSATSVITVPTEFFNQFVESASVFKVPFLS  366 (451)
T ss_dssp             EEEEESSCCGGGEEEEEEEEECSSTTSSEEEEE-EEETTE-EEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECTTSS
T ss_pred             CEEEECCcchhhcCCceEEEEcccCCeeEEEEE-EEECCc-cCCCceEEEeCCCccccCCHHHHHHHHHHcCCeecCCCC
Confidence            999999999999999999999999999999999 999998 227789999999999999999999999999887 33478


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.+||+ ...+|+|+|+|+|.+++|||++
T Consensus       367 ~y~v~C~-~~~~P~itf~fgg~~i~lp~~~  395 (451)
T 3qvc_A          367 LYVTTCG-NTKLPTLEYRSPNKVYTLEPKQ  395 (451)
T ss_dssp             CEEEETT-CTTCCCEEEEETTEEEEECHHH
T ss_pred             eEEeeCC-cCcCCcEEEEECCEEEEEcHHH
Confidence            9999999 7789999999999999999864

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2

Probab=100.00  E-value=1.1e-37  Score=257.65  Aligned_cols=140  Identities=51%  Similarity=0.993  Sum_probs=115.7

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||+|.|++||||+++||+|..|. .+..|..|.                             
T Consensus        46 l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~-~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~  124 (478)
T 1qdm_A           46 LKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCY-FSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGY  124 (478)
T ss_dssp             GCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCC-SCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEE
T ss_pred             eEeccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCC-CCccccCCCCCCcccCCCeeeCCcEEEEEcCCCCeEEE
Confidence            56888999999999999999999999999999999999995 123454332                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCC--CCC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNAS--DEN   67 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~--~~~   67 (177)
                         |                            ++||                            +++|   +...  ...
T Consensus       125 ~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~  204 (478)
T 1qdm_A          125 FSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGE  204 (478)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----
T ss_pred             EEEEEEEECCeEECCEEEEEEEecCCcccccccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCC
Confidence               1                            2355                            2445   2111  245


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHHHHHHHHhCC
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVIAELNKLIGA  141 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~  141 (177)
                      .|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|.++++.+.   .+..+++||||+++++|.+++++|.+++++
T Consensus       205 ~G~l~fGg~d~~~~~G~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a  281 (478)
T 1qdm_A          205 GGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGA  281 (478)
T ss_dssp             CEEEEETCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTC
T ss_pred             CeEEEeCCcCHhhcCCCceEEeccCCCeEEEEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHHhCc
Confidence            89999999999999999999999988999999999999998753   578999999999999999999999999865

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=100.00  E-value=6.4e-38  Score=252.37  Aligned_cols=172  Identities=28%  Similarity=0.600  Sum_probs=147.7

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus        56 l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~--~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~  133 (375)
T 1miq_A           56 LDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGF  133 (375)
T ss_dssp             GGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCC--SSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             cccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCC--cccccCCCcCCCccCCceEECCcEEEEEeCCCeEEEE
Confidence            56788999999999999999999999999999999999996  44565433                             


Q ss_pred             ---C-----------------c------------CCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-----------------K------------FVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-----------------~------------fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                 .            +||                            +++|   +.......
T Consensus       134 ~~~Dtv~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~  213 (375)
T 1miq_A          134 FSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHA  213 (375)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTE
T ss_pred             EEEEEEEEcCceECcEEEEEEeccccccccccCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCC
Confidence               1                 1            234                            2444   22222358


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANG  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g  147 (177)
                      |.|+|||+|+++|.|++.|+|+.+..+|.|.++ |+++++.+ ....+++||||+++++|++++++|.+++++. ....|
T Consensus       214 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~-i~v~g~~~-~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~g  291 (375)
T 1miq_A          214 GYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM-EKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLP  291 (375)
T ss_dssp             EEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE-EEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSS
T ss_pred             eEEEEcccCHHHcCCceEEEecCCCceEEEEEE-EEECCEEc-ccceEEecCCCccEEcCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999999999999998899999999 99999887 6778999999999999999999999999885 55678


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+. ..+|+|+|+|+|++++|||++
T Consensus       292 ~~~~~C~~-~~~P~i~f~f~g~~~~l~~~~  320 (375)
T 1miq_A          292 FYVTTCDN-KEMPTLEFKSANNTYTLEPEY  320 (375)
T ss_dssp             CEEEETTC-TTCCCEEEECSSCEEEECGGG
T ss_pred             eEEEECCC-CCCCcEEEEECCEEEEECHHH
Confidence            89999997 689999999999999999975

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=100.00  E-value=3e-37  Score=244.56  Aligned_cols=173  Identities=26%  Similarity=0.474  Sum_probs=142.3

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCC------------CCCCCCC-C------------------
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSIL------------NIACSVD-K------------------   51 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~------------~~~c~~~-~------------------   51 (177)
                      ++.+.+|+++|+||||+|++.|++||||+++||+|..|..+            +.++... .                  
T Consensus        11 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~   90 (329)
T 3c9x_A           11 DSADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDVY   90 (329)
T ss_dssp             STTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEEEEEE
Confidence            46788999999999999999999999999999999988621            1111110 0                  


Q ss_pred             -C----------------------------cCCC-----------------------------cccc-ccCCCCCCcEEE
Q psy3212          52 -D----------------------------KFVG-----------------------------HSHF-RNASDENGGEIM   72 (177)
Q Consensus        52 -D----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~   72 (177)
                       |                            .+||                             +++| ........|.|+
T Consensus        91 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~~~FS~~l~~~~~G~l~  170 (329)
T 3c9x_A           91 TDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASSLAEPLFTADLRHGQNGSYN  170 (329)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTTSSSSEEEEECCSSSCEEEE
T ss_pred             EEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHhcCCCEEEEEecCCCCcEEE
Confidence             1                            2334                             1334 122234689999


Q ss_pred             EcccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc-cCCCCC
Q psy3212          73 FGGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLI-GAV-PLANGP  148 (177)
Q Consensus        73 fGg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~-~~~~g~  148 (177)
                      |||+|+++|.|++.|+|+. +..+|.|.+++|+++++.+. ....+++||||++++||++++++|++++ ++. ....+.
T Consensus       171 fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~~~~~~~  250 (329)
T 3c9x_A          171 FGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYANVQSAQYDNQQEG  250 (329)
T ss_dssp             ESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTTCTTCEEETTTTE
T ss_pred             EeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHhCCCcEEcCCCCE
Confidence            9999999999999999998 57899999999999998877 7889999999999999999999999999 665 445678


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |.++|+  ..+|+|+|+|+|++++||+++
T Consensus       251 ~~~~C~--~~~P~i~f~f~g~~~~ip~~~  277 (329)
T 3c9x_A          251 VVFDCD--EDLPSFSFGVGSSTITIPGDL  277 (329)
T ss_dssp             EEEETT--CCCCCEEEEETTEEEEECGGG
T ss_pred             EEEECC--CCCCcEEEEECCEEEEECHHH
Confidence            999999  579999999999999999874

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=100.00  E-value=2.7e-37  Score=253.46  Aligned_cols=172  Identities=26%  Similarity=0.539  Sum_probs=146.7

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus       132 L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~--~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs~~G~  209 (453)
T 2bju_A          132 LVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT--TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGF  209 (453)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--STTGGGSCCBCGGGCTTCEEEEEEEEEECSSSEEEEE
T ss_pred             eEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCC--ccccCCCCcCCCccCCceeECCcEEEEEcCCCCeEEE
Confidence            45778999999999999999999999999999999999997  45675443                             


Q ss_pred             ---C-------------------c----------CCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-------------------K----------FVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-------------------~----------fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                   +          +||                            +++|   +.......
T Consensus       210 ~~~Dtv~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~  289 (453)
T 2bju_A          210 FSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHT  289 (453)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBC
T ss_pred             EEEEEEEEeCcEEEEEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCC
Confidence               1                   1          244                            2444   22223468


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC-
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG-  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g-  147 (177)
                      |.|+|||+|+++|.|++.|+|+.+..+|.|.++ |++++..+ .+..+++||||+++++|++++++|.+++++.....| 
T Consensus       290 G~l~fGg~D~~~y~G~l~~~pv~~~~~w~V~l~-I~Vgg~~~-~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~~~~g~  367 (453)
T 2bju_A          290 GFLTIGGIEERFYEGPLTYEKLNHDLYWQITLD-AHVGNIML-EKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLP  367 (453)
T ss_dssp             EEEEESSCCGGGEEEEEEEEEEEEETTEEEEEE-EEETTEEE-EEEEEEECTTCCSEEECHHHHHHHTTTSSCEECTTSS
T ss_pred             eEEEECCCCHHHcCCceEEEecCCCceEEEEEE-EEECcEEe-ccccEEEcCCCCeEecCHHHHHHHHHHhCCcccCCCc
Confidence            999999999999999999999998899999999 99999443 667899999999999999999999999988866677 


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+. ..+|+|+|+|+|++++|||++
T Consensus       368 ~~~v~C~~-~~~P~itf~fgg~~~~l~~~~  396 (453)
T 2bju_A          368 FYVTLCNN-SKLPTFEFTSENGKYTLEPEY  396 (453)
T ss_dssp             CEEEETTC-TTCCCEEEECSSCEEEECHHH
T ss_pred             eEEEecCC-CCCCcEEEEECCEEEEECHHH
Confidence            89999997 689999999999999999864

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=100.00  E-value=6.8e-37  Score=242.47  Aligned_cols=168  Identities=27%  Similarity=0.523  Sum_probs=140.4

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------   51 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------   51 (177)
                      ..+.+|+++|+||||+|++.|++||||+++||+|..|..+  .| .+.                                
T Consensus        12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~--~~-~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~   88 (329)
T 1oew_A           12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS--EV-XQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDV   88 (329)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGG--GC--CCCBCGGGCTTCEEEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcc--cc-ccCccCCccCccceecCCCeEEEEeCCCCcEEEEE
Confidence            4678999999999999999999999999999999999722  22 111                                


Q ss_pred             --C----------------------------cCCC-----------------------------cccc-ccCCCCCCcEE
Q psy3212          52 --D----------------------------KFVG-----------------------------HSHF-RNASDENGGEI   71 (177)
Q Consensus        52 --D----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l   71 (177)
                        |                            .+||                             +++| ........|.|
T Consensus        89 ~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~~~FS~~L~~~~~G~l  168 (329)
T 1oew_A           89 YTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFTADLGYHAPGTY  168 (329)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTTSSSSEEEEECCSSSCEEE
T ss_pred             EEEEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHhccCcEEEEEccCCCCeEE
Confidence              1                            2333                             1334 11223468999


Q ss_pred             EEcccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc-cCCCC
Q psy3212          72 MFGGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLI-GAV-PLANG  147 (177)
Q Consensus        72 ~fGg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~-~~~~g  147 (177)
                      +|||+|+++|.|++.|+|+. +..+|.|.+++|+++++.+. ....+++||||+++++|++++++|++++ ++. ....+
T Consensus       169 ~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~~~~~~g  248 (329)
T 1oew_A          169 NFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSVG  248 (329)
T ss_dssp             EESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTT
T ss_pred             EEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhCCCcEEcCCCC
Confidence            99999999999999999998 67899999999999998776 6789999999999999999999999999 665 44567


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRT  176 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~  176 (177)
                      .|.++|+  ..+|+|+|+|+|++++||++
T Consensus       249 ~~~~~C~--~~~P~i~f~fgg~~~~ip~~  275 (329)
T 1oew_A          249 GYVFPCS--ATLPSFTFGVGSARIVIPGD  275 (329)
T ss_dssp             EEEEETT--CCCCCEEEEETTEEEEECHH
T ss_pred             EEEEECC--CCCCcEEEEECCEEEEECHH
Confidence            8999999  57899999999999999985

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=100.00  E-value=5.4e-36  Score=236.97  Aligned_cols=170  Identities=32%  Similarity=0.627  Sum_probs=141.4

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-------------------------------
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-------------------------------   51 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-------------------------------   51 (177)
                      +..+.+|+++|+||||+|++.|++||||+++||+|..|..+   |..+.                               
T Consensus        11 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c---~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~   87 (325)
T 2apr_A           11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC---GSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGIL   87 (325)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC---CTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEE
T ss_pred             cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH---hcCCCCCCcccCCCeeeCCCEEEEEECCCCCEEEEE
Confidence            56788999999999999999999999999999999999732   33222                               


Q ss_pred             --C---------------------------cCCC-----------------------------cccc---ccC-CCCCCc
Q psy3212          52 --D---------------------------KFVG-----------------------------HSHF---RNA-SDENGG   69 (177)
Q Consensus        52 --D---------------------------~fdG-----------------------------~~~F---~~~-~~~~~G   69 (177)
                        |                           ++||                             +++|   +.. .....|
T Consensus        88 ~~D~v~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G  167 (325)
T 2apr_A           88 AKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGG  167 (325)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCE
T ss_pred             EEEEEEECCEEECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCC
Confidence              1                           2454                             2445   211 245789


Q ss_pred             EEEEcccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG  147 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g  147 (177)
                      .|+|||+|+++|.|++.|+|+. +..+|.|.+++|++++ .+. ....+++||||++++||+++++++.+++.+.....+
T Consensus       168 ~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~-~~~~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g  246 (325)
T 2apr_A          168 EYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGT-STVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDG  246 (325)
T ss_dssp             EEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETT-EEEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSS
T ss_pred             EEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECC-EecCCCceEEEecCCccEECCHHHHHHHHHHHhcccCCCC
Confidence            9999999999999999999997 5789999999999999 455 788999999999999999999999999977633337


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|+. ..+|+|+|+|+|.+++||+++
T Consensus       247 ~~~~~C~~-~~~p~i~f~f~g~~~~ip~~~  275 (325)
T 2apr_A          247 TYTISCDT-SAFKPLVFSINGASFQVSPDS  275 (325)
T ss_dssp             CEEECSCG-GGCCCEEEEETTEEEEECGGG
T ss_pred             eEEEECCC-CCCCcEEEEECCEEEEECHHH
Confidence            89999994 348999999999999999874

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=100.00  E-value=9.9e-37  Score=244.21  Aligned_cols=176  Identities=27%  Similarity=0.528  Sum_probs=145.9

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.+.+|+++|+||||+|++.|++||||+++||+|..|.. +..|..+.                             
T Consensus        12 l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~   90 (361)
T 1mpp_A           12 LYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDN-SEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGI   90 (361)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCG-GGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             eecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCC-CccCCCCCcCCCccCCceEecCCeEEEEECCceEEEE
Confidence            567889999999999999999999999999999999998861 12454432                             


Q ss_pred             ---C---------------------c------------CCC----------------------------------cccc-
Q psy3212          52 ---D---------------------K------------FVG----------------------------------HSHF-   60 (177)
Q Consensus        52 ---D---------------------~------------fdG----------------------------------~~~F-   60 (177)
                         |                     .            ++|                                  +++| 
T Consensus        91 ~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS  170 (361)
T 1mpp_A           91 YFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFS  170 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEE
T ss_pred             EEEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEE
Confidence               1                     1            233                                  1223 


Q ss_pred             c-cCCCCCCcEEEEcccCCCCeeeeeeEEecCccc----ceEEEEeEEEEcCeEec--CCcEEE-EeCCCCcEEeCHHHH
Q psy3212          61 R-NASDENGGEIMFGGVDKDKFVGDITYSPVSRKG----YWQFGVESIKIEKNVYC--SNCQAI-ADTGTSLIIGPSKVI  132 (177)
Q Consensus        61 ~-~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~----~w~v~~~~i~v~~~~~~--~~~~ai-~DSGt~~~~lP~~~~  132 (177)
                      . .......|.|+|||+|+++|.|++.|+|+.+..    +|.|.+++|+++++.+.  ....++ |||||++++||++++
T Consensus       171 ~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~  250 (361)
T 1mpp_A          171 VYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFA  250 (361)
T ss_dssp             EECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEEEEHHHH
T ss_pred             EEecCCCCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEECCeeeccCCCCEEEEECCCCCceeCCHHHH
Confidence            1 111135899999999999999999999999665    99999999999998763  667899 999999999999999


Q ss_pred             HHHHHHhCCc-cCCCCCEEEcCCCCCCC-ccEEEEE--C-----CEEEEeccCC
Q psy3212         133 AELNKLIGAV-PLANGPAKVDCDNLDKM-PNVDIIL--G-----GKNFTLTRTN  177 (177)
Q Consensus       133 ~~l~~~~~~~-~~~~g~~~~~C~~~~~~-p~l~f~~--g-----g~~~~l~~~d  177 (177)
                      ++|++++++. ....|.|.++|+....+ |+|+|+|  +     |++++|||++
T Consensus       251 ~~l~~~~~~~~~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~~i~~~~  304 (361)
T 1mpp_A          251 EKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISK  304 (361)
T ss_dssp             HHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGG
T ss_pred             HHHHHHhCCcccCCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeEEEECHHH
Confidence            9999999885 44577899999976778 9999999  8     8999999975

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=100.00  E-value=3.4e-36  Score=238.85  Aligned_cols=169  Identities=26%  Similarity=0.474  Sum_probs=140.2

Q ss_pred             CceEEEEEEeCCCCceEEEEEecCCCceEEeCC--CCCCC-----CCCCCCCC---------------------------
Q psy3212           6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQ--HCSIL-----NIACSVDK---------------------------   51 (177)
Q Consensus         6 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~c~~~-----~~~c~~~~---------------------------   51 (177)
                      +.+|+++|+||||||++.|++||||+++||++.  .|...     +..|..+.                           
T Consensus        11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~   90 (334)
T 1j71_A           11 GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTSS   90 (334)
T ss_dssp             SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSCEE
T ss_pred             CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCCEE
Confidence            789999999999999999999999999999876  57521     23465433                           


Q ss_pred             ------C---------------------cCCC------------------------------cccc---ccCCCCCCcEE
Q psy3212          52 ------D---------------------KFVG------------------------------HSHF---RNASDENGGEI   71 (177)
Q Consensus        52 ------D---------------------~fdG------------------------------~~~F---~~~~~~~~G~l   71 (177)
                            |                     .++|                              +++|   +.......|.|
T Consensus        91 ~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l  170 (334)
T 1j71_A           91 QGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKI  170 (334)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEE
T ss_pred             EEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEE
Confidence                  1                     2333                              2344   22223568999


Q ss_pred             EEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCCCEE
Q psy3212          72 MFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANGPAK  150 (177)
Q Consensus        72 ~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g~~~  150 (177)
                      +|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+..+..+++||||++++||++++++|++++++. ....+.|.
T Consensus       171 ~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~  250 (334)
T 1j71_A          171 IFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIYR  250 (334)
T ss_dssp             EETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEETTTTEEE
T ss_pred             EEeeechHHccCceEEEEccCCCeEEEEEeEEEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHHcCCcccCCCceEE
Confidence            99999999999999999999888999999999999998775678999999999999999999999999887 43344788


Q ss_pred             -EcCCCCCCCccEEEEE-CCEEEEeccCC
Q psy3212         151 -VDCDNLDKMPNVDIIL-GGKNFTLTRTN  177 (177)
Q Consensus       151 -~~C~~~~~~p~l~f~~-gg~~~~l~~~d  177 (177)
                       ++|+.   +|.|+|+| +|++++||+++
T Consensus       251 ~~~C~~---~p~i~f~f~~g~~~~i~~~~  276 (334)
T 1j71_A          251 LPSCDL---SGDAVFNFDQGVKITVPLSE  276 (334)
T ss_dssp             CSSSCC---CSEEEEEESTTCEEEEEGGG
T ss_pred             EEcCCC---CCceEEEEcCCcEEEECHHH
Confidence             99983   89999999 68999999875

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=100.00  E-value=9.6e-37  Score=241.72  Aligned_cols=173  Identities=31%  Similarity=0.570  Sum_probs=146.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCC--CCCC---------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIAC--SVDK---------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c--~~~~---------------------------   51 (177)
                      |+|+.+.+|+++|+||  ||+++|++||||+++||+|..|.  +..|  ..+.                           
T Consensus        11 l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~--~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs~~G   86 (330)
T 1yg9_A           11 VHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECV--GGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGSAVG   86 (330)
T ss_dssp             EEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCC--SGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEEEEE
T ss_pred             eecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC--CccCcccccCccCCCCCceEECCCEEEEEECCceEEE
Confidence            5688899999999999  99999999999999999999997  3456  3321                           


Q ss_pred             ----C---------------------------cCCC----------------------------cccc---ccCC--CCC
Q psy3212          52 ----D---------------------------KFVG----------------------------HSHF---RNAS--DEN   67 (177)
Q Consensus        52 ----D---------------------------~fdG----------------------------~~~F---~~~~--~~~   67 (177)
                          |                           ++||                            +++|   +...  ...
T Consensus        87 ~~~~Dtv~ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~  166 (330)
T 1yg9_A           87 RGIEDSLTISQLTTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEH  166 (330)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCE
T ss_pred             EEEEEEEEECCEEEcCeEEEEEEEcccccccccCceEEEcCcchhccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCC
Confidence                1                           2344                            1344   1111  123


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCC
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLAN  146 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~  146 (177)
                      .|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+. .+..+++||||+++++|++++++|++++++.....
T Consensus       167 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~  246 (330)
T 1yg9_A          167 FGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKT  246 (330)
T ss_dssp             EEEEEETSCCGGGEEEEEEEEEBSCTTSCCEECSEEEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEEC
T ss_pred             CCEEEECCcCHHHccCceEEEECCCCCEEEEEeCeEEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCC
Confidence            79999999999999999999999988999999999999998876 77899999999999999999999999998874445


Q ss_pred             C--CE-EEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         147 G--PA-KVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       147 g--~~-~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |  .| .+||+....+|+|+|+|+|++++|||++
T Consensus       247 g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~  280 (330)
T 1yg9_A          247 TTRRICKLDCSKIPSLPDVTFVINGRNFNISSQY  280 (330)
T ss_dssp             SSCEEEEECGGGGGGSCCEEEEETTEEEEECHHH
T ss_pred             CceEEEEEECCCccccCcEEEEECCEEEEECHHH
Confidence            6  78 9999977789999999999999999864

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=100.00  E-value=5.7e-36  Score=238.21  Aligned_cols=170  Identities=25%  Similarity=0.466  Sum_probs=139.9

Q ss_pred             cCceEEEEEEeCCCCceEEEEEecCCCceEEeCC--CCCCC-----CCCCCCCC--------------------------
Q psy3212           5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQ--HCSIL-----NIACSVDK--------------------------   51 (177)
Q Consensus         5 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~c~~~-----~~~c~~~~--------------------------   51 (177)
                      .+.+|+++|+||||+|++.|++||||+++||++.  .|...     +..|..+.                          
T Consensus        10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~   89 (342)
T 2qzx_A           10 EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDGSY   89 (342)
T ss_dssp             CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTSCE
T ss_pred             CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCCCe
Confidence            5789999999999999999999999999999865  57521     23464432                          


Q ss_pred             -------C---------------------cCCC------------------------------cccc---ccCCCCCCcE
Q psy3212          52 -------D---------------------KFVG------------------------------HSHF---RNASDENGGE   70 (177)
Q Consensus        52 -------D---------------------~fdG------------------------------~~~F---~~~~~~~~G~   70 (177)
                             |                     .++|                              +++|   +.......|.
T Consensus        90 ~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~  169 (342)
T 2qzx_A           90 AKGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQ  169 (342)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEE
T ss_pred             EEEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeE
Confidence                   1                     2333                              2344   2222356899


Q ss_pred             EEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCcc---CCC-
Q psy3212          71 IMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVP---LAN-  146 (177)
Q Consensus        71 l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~---~~~-  146 (177)
                      |+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+.....+++||||++++||++++++|++++++..   ... 
T Consensus       170 l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~  249 (342)
T 2qzx_A          170 IIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGN  249 (342)
T ss_dssp             EEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSC
T ss_pred             EEECccchhhEecceEEEeccCCceEEEEEeEEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCC
Confidence            9999999999999999999998889999999999999987755789999999999999999999999998762   223 


Q ss_pred             CCEEEcCCCCCCCccEEEEE-CCEEEEeccCC
Q psy3212         147 GPAKVDCDNLDKMPNVDIIL-GGKNFTLTRTN  177 (177)
Q Consensus       147 g~~~~~C~~~~~~p~l~f~~-gg~~~~l~~~d  177 (177)
                      +.|.++|+.   +|.|+|+| +|++++||+++
T Consensus       250 ~~~~~~C~~---~p~i~f~f~~g~~~~i~~~~  278 (342)
T 2qzx_A          250 KVYVADCKT---SGTIDFQFGNNLKISVPVSE  278 (342)
T ss_dssp             EEEEECTTC---CCEEEEEETTTEEEEEEGGG
T ss_pred             cEEEEECCC---CCcEEEEECCCcEEEEcHHH
Confidence            379999983   89999999 68999999875

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=100.00  E-value=1.7e-35  Score=235.26  Aligned_cols=170  Identities=26%  Similarity=0.478  Sum_probs=139.7

Q ss_pred             cCceEEEEEEeCCCCceEEEEEecCCCceEEeCCC--CCC-----CCCCCCCCC--------------------------
Q psy3212           5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQH--CSI-----LNIACSVDK--------------------------   51 (177)
Q Consensus         5 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~--c~~-----~~~~c~~~~--------------------------   51 (177)
                      .+.+|+++|+||||||+++|++||||+++||++..  |..     ....|..+.                          
T Consensus        10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~   89 (342)
T 3pvk_A           10 EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSS   89 (342)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCCCe
Confidence            46889999999999999999999999999999764  631     123564333                          


Q ss_pred             -------C---------------------cCCC-----------------------------cccc---ccCCCCCCcEE
Q psy3212          52 -------D---------------------KFVG-----------------------------HSHF---RNASDENGGEI   71 (177)
Q Consensus        52 -------D---------------------~fdG-----------------------------~~~F---~~~~~~~~G~l   71 (177)
                             |                     .++|                             +++|   +.......|.|
T Consensus        90 ~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l  169 (342)
T 3pvk_A           90 SQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQI  169 (342)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEE
T ss_pred             EEEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEE
Confidence                   1                     2333                             2334   22333467999


Q ss_pred             EEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCcc--CCCC-
Q psy3212          72 MFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVP--LANG-  147 (177)
Q Consensus        72 ~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~--~~~g-  147 (177)
                      +|||+|+++|.|++.|+|+.+..+|.|.+++|.++++.+. .+..+++||||++++||++++++|++++++..  ...+ 
T Consensus       170 ~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~  249 (342)
T 3pvk_A          170 IFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGN  249 (342)
T ss_dssp             EETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EECccCccceeeeeEEeecCccceEEEEEeEEEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCCCc
Confidence            9999999999999999999988899999999999999887 66899999999999999999999999998772  2233 


Q ss_pred             -CEEEcCCCCCCCccEEEEEC-CEEEEeccCC
Q psy3212         148 -PAKVDCDNLDKMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       148 -~~~~~C~~~~~~p~l~f~~g-g~~~~l~~~d  177 (177)
                       .|.++|+.   .|+|+|+|+ |.+++||+++
T Consensus       250 ~~~~~~C~~---~p~i~f~f~~g~~~~vp~~~  278 (342)
T 3pvk_A          250 SFYEVDCNL---SGDVVFNFSKNAKISVPASE  278 (342)
T ss_dssp             EEEEECSCC---CSEEEEEESTTCEEEEEGGG
T ss_pred             eEEEEecCC---CCceEEEECCCCEEEEcHHH
Confidence             49999993   599999998 7999999874

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=100.00  E-value=3.7e-35  Score=233.18  Aligned_cols=171  Identities=27%  Similarity=0.465  Sum_probs=140.5

Q ss_pred             cCceEEEEEEeCCCCceEEEEEecCCCceEEeCCC--CCCCCCCCCCCC-------------------------------
Q psy3212           5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQH--CSILNIACSVDK-------------------------------   51 (177)
Q Consensus         5 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~--c~~~~~~c~~~~-------------------------------   51 (177)
                      .+.+|+++|+||||||+++|++||||+++||++..  |... ..|..+.                               
T Consensus        10 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~-~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~G~~   88 (339)
T 3fv3_A           10 EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKG-VDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQGTW   88 (339)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTT-CCTTTTCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCC-CCCCCCCcCCCccCcceeeCCceEEEEECCCceEEEEE
Confidence            35789999999999999999999999999999654  5411 1465433                               


Q ss_pred             --C---------------------cCCC--------------------------------------cccc---ccCCCCC
Q psy3212          52 --D---------------------KFVG--------------------------------------HSHF---RNASDEN   67 (177)
Q Consensus        52 --D---------------------~fdG--------------------------------------~~~F---~~~~~~~   67 (177)
                        |                     .++|                                      +++|   +......
T Consensus        89 ~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~  168 (339)
T 3fv3_A           89 GKDTVTINGVSITGQQIADVTQTSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE  168 (339)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCS
T ss_pred             EEEEEEECCEEECceEEEEEEecCCCceeEEecCccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCC
Confidence              1                     1223                                      1233   2223345


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC---
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL---  144 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~---  144 (177)
                      .|.|+|||+|+++|.|++.|+|+....+|.|.+++|.++++.+.....+++||||++++||++++++|++++++...   
T Consensus       169 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~  248 (339)
T 3fv3_A          169 TGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVA  248 (339)
T ss_dssp             EEEEEETEEETTSBSSCCEEEEBCCSSSCEEEEEEEEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEE
T ss_pred             CeEEEEeeechHHeecceEEEecccCccEEEEEEEEEECCEeecCCccEEEeCCCCCEecCHHHHHHHHHHcCCEEcccc
Confidence            89999999999999999999999988899999999999999887557899999999999999999999999987732   


Q ss_pred             -CCCCEEEcCCCCCCCccEEEEEC-CEEEEeccCC
Q psy3212         145 -ANGPAKVDCDNLDKMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       145 -~~g~~~~~C~~~~~~p~l~f~~g-g~~~~l~~~d  177 (177)
                       ..+.|.++|+. ..+|.|+|+|+ |++++||+++
T Consensus       249 ~~~~~~~~~C~~-~~~p~i~f~f~~g~~~~v~~~~  282 (339)
T 3fv3_A          249 RDQYLYFIDCNT-DTSGTTVFNFGNGAKITVPNTE  282 (339)
T ss_dssp             TTEEEEEECTTC-CCCSEEEEEETTSCEEEEEGGG
T ss_pred             ccCceEEEecCC-CCCCcEEEEECCCCEEEECHHH
Confidence             57789999996 56899999995 8999999875

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=100.00  E-value=6.2e-35  Score=230.70  Aligned_cols=167  Identities=25%  Similarity=0.443  Sum_probs=138.3

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------   51 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------   51 (177)
                      ..+.+|+++|+||  ||+++|++||||+++||+|..|..  ..|..+.                                
T Consensus        12 ~~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~--~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~G~~~~   87 (323)
T 1izd_A           12 SNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPS--SERSGHDYYTPGSSAQKIDGATWSISYGDGSSASGDVYK   87 (323)
T ss_dssp             GGGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCH--HHHTTCCCBCCCTTCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCc--ccccCCCCCCccccCCccCCCeEEEEcCCCCeEEEEEEE
Confidence            3678999999999  899999999999999999999862  1222211                                


Q ss_pred             C----------------------------cCCC-----------------------------cccc-ccCCCCCCcEEEE
Q psy3212          52 D----------------------------KFVG-----------------------------HSHF-RNASDENGGEIMF   73 (177)
Q Consensus        52 D----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~f   73 (177)
                      |                            .+||                             +++| ........|.|+|
T Consensus        88 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~i~~~~FS~~L~~~~~G~l~f  167 (323)
T 1izd_A           88 DKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHNAPGVYDF  167 (323)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSSSEEEEECCTTSCEEEEE
T ss_pred             EEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHhccCcEEEEEccCCCCCEEEE
Confidence            1                            2344                             1344 1122236899999


Q ss_pred             cccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc-cCCCCCE
Q psy3212          74 GGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLI-GAV-PLANGPA  149 (177)
Q Consensus        74 Gg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~-~~~~g~~  149 (177)
                      ||+|+++|.|++.|+|+. +..+|.|.+++|++++ .+. .+..+++||||+++++|++++++|++++ ++. ....|.|
T Consensus       168 Gg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~~~~g~~  246 (323)
T 1izd_A          168 GYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGY  246 (323)
T ss_dssp             SSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EEECCCEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEE
T ss_pred             CCcCccccccceEEEECCCCCceEEEEECeEEECC-cccCCCceEEEeCCCcceeCCHHHHHHHHHhCCCcEEcCcCCEE
Confidence            999999999999999997 6789999999999999 666 7889999999999999999999999999 565 4457889


Q ss_pred             EEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         150 KVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       150 ~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .+||+  +.+|+|+|+|+|++++||+++
T Consensus       247 ~~~C~--~~~P~i~f~fgg~~~~i~~~~  272 (323)
T 1izd_A          247 VFPSS--ASLPDFSVTIGDYTATVPGEY  272 (323)
T ss_dssp             EEETT--CCCCCEEEEETTEEEEECHHH
T ss_pred             EEECC--CCCceEEEEECCEEEecCHHH
Confidence            99999  579999999999999999863

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=100.00  E-value=3.8e-35  Score=232.08  Aligned_cols=167  Identities=26%  Similarity=0.505  Sum_probs=138.2

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------   51 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------   51 (177)
                      ..+.+|+++|+||  ||+++|++||||+++||+|..|..+  .|..+.                                
T Consensus        11 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~--~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~G~~~~   86 (325)
T 1ibq_A           11 NNDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSS--EQTGHDLYTPSSSATKLSGYSWDISYGDGSSASGDVYR   86 (325)
T ss_dssp             TTTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHH--HHTTSCCCBCCSSCEECTTCBEEEECSSSCEEEEEEEE
T ss_pred             CCCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCcc--ccCCCCCCCchhcCCccCCCEEEEEeCCCCEEEEEEEE
Confidence            4678999999999  9999999999999999999998621  121111                                


Q ss_pred             C----------------------------cCCC-----------------------------cccc-ccCCCCCCcEEEE
Q psy3212          52 D----------------------------KFVG-----------------------------HSHF-RNASDENGGEIMF   73 (177)
Q Consensus        52 D----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~f   73 (177)
                      |                            .+||                             +++| ........|.|+|
T Consensus        87 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~i~~~~FS~~l~~~~~G~l~f  166 (325)
T 1ibq_A           87 DTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQLDSPLFAVQLKHDAPGVYDF  166 (325)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSSSEEEEEEETTEEEEEEE
T ss_pred             eEEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHhcCCcEEEEEecCCCCceEEE
Confidence            1                            2344                             1333 1112235899999


Q ss_pred             cccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc-cCCCCCE
Q psy3212          74 GGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLI-GAV-PLANGPA  149 (177)
Q Consensus        74 Gg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~-~~~~g~~  149 (177)
                      ||+|+++|.|++.|+|+. +..+|.|.+++|+++++.+. ....+++||||+++++|++++++|++++ ++. ....+.|
T Consensus       167 Gg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~~~~g~~  246 (325)
T 1ibq_A          167 GYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQESYEAGGY  246 (325)
T ss_dssp             SSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTTSTTCBCCSSSSSC
T ss_pred             CCcChhhccCceEEEEcCCCCceEEEEECcEEECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHhCCCceEcCcCCeE
Confidence            999999999999999998 67899999999999998877 7889999999999999999999999999 666 4456789


Q ss_pred             EEcCCCCCCCccEEEEECCEEEEeccC
Q psy3212         150 KVDCDNLDKMPNVDIILGGKNFTLTRT  176 (177)
Q Consensus       150 ~~~C~~~~~~p~l~f~~gg~~~~l~~~  176 (177)
                      .++|+  ..+|+|+|+|+|++++||++
T Consensus       247 ~~~C~--~~~P~i~f~fgg~~~~i~~~  271 (325)
T 1ibq_A          247 VFSCS--TDLPDFTVVIGDYKAVVPGK  271 (325)
T ss_dssp             EEETT--CCCCCEEEEETTEEEEECHH
T ss_pred             EEEcC--CCCCcEEEEECCEEEEECHH
Confidence            99999  57999999999999999986

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=100.00  E-value=6.5e-35  Score=230.59  Aligned_cols=167  Identities=26%  Similarity=0.486  Sum_probs=137.9

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------   51 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------   51 (177)
                      ..+.+|+++|+||  ||++.|++||||+++||+|..|..  ..|..+.                                
T Consensus        12 ~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~--~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs~~~G~~~~   87 (323)
T 1bxo_A           12 ANDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPA--SQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFT   87 (323)
T ss_dssp             GGGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCH--HHHTTSCCBCHHHHCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCc--hhccCCCCCCcccCCcccCCCeEEEEeCCCCeEEEEEEE
Confidence            4678999999999  999999999999999999999972  2233222                                


Q ss_pred             C----------------------------cCCC-----------------------------cccc-ccCCCCCCcEEEE
Q psy3212          52 D----------------------------KFVG-----------------------------HSHF-RNASDENGGEIMF   73 (177)
Q Consensus        52 D----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~f   73 (177)
                      |                            .+||                             +++| ........|.|+|
T Consensus        88 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~i~~~~FS~~L~~~~~G~l~f  167 (323)
T 1bxo_A           88 DSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDF  167 (323)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGGBSSSEEEEECCSSSCEEEEE
T ss_pred             EEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHhcCCcEEEEEEeCCCCceEEE
Confidence            1                            2344                             1344 1222346899999


Q ss_pred             cccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHh-CCc-cCCCCCEE
Q psy3212          74 GGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLI-GAV-PLANGPAK  150 (177)
Q Consensus        74 Gg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~-~~~-~~~~g~~~  150 (177)
                      ||+|+++|.|++.|+|+. +..+|.|.+++|++++ ....+..+++||||+++++|++++++|++++ ++. ....|.|.
T Consensus       168 Gg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~  246 (323)
T 1bxo_A          168 GFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS-QSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYV  246 (323)
T ss_dssp             SSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT-EEEEEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEE
T ss_pred             eCcChhhccCceEEEECCCCCCeEEEEEeeEEECC-ccCCCceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEE
Confidence            999999999999999997 6789999999999999 3227789999999999999999999999999 666 44578899


Q ss_pred             EcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         151 VDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       151 ~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ++|+  ..+|+|+|+|+|++++||+++
T Consensus       247 ~~C~--~~~P~i~f~fgg~~~~l~~~~  271 (323)
T 1bxo_A          247 FDCS--TNLPDFSVSISGYTATVPGSL  271 (323)
T ss_dssp             ECTT--CCCCCEEEEETTEEEEECHHH
T ss_pred             EECC--CCCceEEEEECCEEEEECHHH
Confidence            9999  579999999999999999863

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=100.00  E-value=8e-35  Score=231.44  Aligned_cols=175  Identities=27%  Similarity=0.519  Sum_probs=139.3

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC------------------C----------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK------------------D----------   52 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~------------------D----------   52 (177)
                      |.|+ +.+|+++|+||||||++.|++||||+++||+|...-..+..+....                  |          
T Consensus         7 l~n~-~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~~y~~s~Ss~~~~~~~~i~Yg~Gs~~G~~~~Dtv~~g~~~v~   85 (340)
T 1wkr_A            7 ATNQ-LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIP   85 (340)
T ss_dssp             EEEC-SSCEEEEEEETTTTEEEEEEEETTCCCCEECSSSCCCCCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEE
T ss_pred             eecc-CcEEEEEEEECCCCcEEEEEEeCCChhheecCCCccCCcCCccccCceEEEEECCcEEEEEEEEEEEEECCEEEc
Confidence            4565 5699999999999999999999999999999864321111110000                  1          


Q ss_pred             --------------cCCC------------------------------------cccc---ccC---CCCCCcEEEEccc
Q psy3212          53 --------------KFVG------------------------------------HSHF---RNA---SDENGGEIMFGGV   76 (177)
Q Consensus        53 --------------~fdG------------------------------------~~~F---~~~---~~~~~G~l~fGg~   76 (177)
                                    .++|                                    +++|   +..   .....|.|+|||+
T Consensus        86 ~~~fg~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~  165 (340)
T 1wkr_A           86 KQSIGVASRDSGFDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGAT  165 (340)
T ss_dssp             EEEEEEEEEEESCTTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSC
T ss_pred             ceEEEEEEccCCCcCCCcEEECCccccccccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEccc
Confidence                          2333                                    1344   111   1235799999999


Q ss_pred             CCCCeeeeeeEEecCc----ccceEEEEeEEEEcC-eEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCCCEE
Q psy3212          77 DKDKFVGDITYSPVSR----KGYWQFGVESIKIEK-NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANGPAK  150 (177)
Q Consensus        77 d~~~~~g~l~~~p~~~----~~~w~v~~~~i~v~~-~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g~~~  150 (177)
                      |+++|.|++.|+|+.+    ..+|.+. .+|++++ +.+..+..+++||||++++||++++++|.++++++ ....|.|.
T Consensus       166 d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~~~g~~~  244 (340)
T 1wkr_A          166 DSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLR  244 (340)
T ss_dssp             CGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTSSEE
T ss_pred             ChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHHHHhhCCEEcCCCCeEE
Confidence            9999999999999986    7899999 9999998 77764568999999999999999999999999987 44577899


Q ss_pred             EcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         151 VDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       151 ~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +||+....+|+|+|+|+|++++|+|++
T Consensus       245 ~~C~~~~~~p~i~f~f~g~~~~i~~~~  271 (340)
T 1wkr_A          245 LTTAQYANLQSLFFTIGGQTFELTANA  271 (340)
T ss_dssp             ECHHHHHTCCCEEEEETTEEEEECTGG
T ss_pred             eeccccccCCcEEEEECCEEEEEcHHH
Confidence            999866679999999999999998864

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=227.77  Aligned_cols=172  Identities=28%  Similarity=0.510  Sum_probs=136.5

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |++..+..|+++|+||||||+++|++||||+++||+|..|.    .|...-                             
T Consensus         7 l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~   82 (383)
T 2ewy_A            7 LQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS----YIDTYFDTERSSTYRSKGFDVTVKYTQGSWTGFVG   82 (383)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT----TBSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEE
T ss_pred             ccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCC----ccccCcccccCccceeCCceEEEEECCcEEEEEEE
Confidence            45677889999999999999999999999999999999886    222110                             


Q ss_pred             -C------------------------------cCCC-----------------------------cccc---cc------
Q psy3212          52 -D------------------------------KFVG-----------------------------HSHF---RN------   62 (177)
Q Consensus        52 -D------------------------------~fdG-----------------------------~~~F---~~------   62 (177)
                       |                              .+||                             +++|   +.      
T Consensus        83 ~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i~~~FS~~l~~~~~~~  162 (383)
T 2ewy_A           83 EDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPV  162 (383)
T ss_dssp             EEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTCCSCEEEEECCC----
T ss_pred             EEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCCCcceEEEeecccccc
Confidence             1                              1244                             1345   11      


Q ss_pred             -CCCCCCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-C-----CcEEEEeCCCCcEEeCHHHHHHH
Q psy3212          63 -ASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-S-----NCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus        63 -~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~-----~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                       ......|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+. .     ...+++||||++++||++++++|
T Consensus       163 ~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l  242 (383)
T 2ewy_A          163 AGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAV  242 (383)
T ss_dssp             -----CCEEEEETSCCGGGCCSCEEEEECSSBTTBBCCEEEEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHH
T ss_pred             ccCCCCCeEEEeCccchhhccCccEEEecCCCceEEEEEEEEEECCEEccccccccCCccEEEEcCCccccCCHHHHHHH
Confidence             1235689999999999999999999999988999999999999998764 1     46899999999999999999999


Q ss_pred             HHHhCCccCC----CC---CEEEcCCCCC-----CCccEEEEECCE------EEEeccC
Q psy3212         136 NKLIGAVPLA----NG---PAKVDCDNLD-----KMPNVDIILGGK------NFTLTRT  176 (177)
Q Consensus       136 ~~~~~~~~~~----~g---~~~~~C~~~~-----~~p~l~f~~gg~------~~~l~~~  176 (177)
                      ++++++....    .+   .|.++|....     .+|.|+|+|+|.      +++|+|+
T Consensus       243 ~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~  301 (383)
T 2ewy_A          243 VEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQ  301 (383)
T ss_dssp             HHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEEEECHH
T ss_pred             HHHHhhhcccccCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEEEEChH
Confidence            9999665221    12   3589998643     489999999874      7888876

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=100.00  E-value=2e-33  Score=227.90  Aligned_cols=174  Identities=25%  Similarity=0.451  Sum_probs=133.0

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCC--------CCCCCCC------------------C-----
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN--------IACSVDK------------------D-----   52 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~--------~~c~~~~------------------D-----   52 (177)
                      ..+..|+++|+||||||+++|++||||+++||+|..|....        .++....                  |     
T Consensus        25 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig  104 (402)
T 3vf3_A           25 KSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIP  104 (402)
T ss_dssp             ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEECT
T ss_pred             CCCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCCCcccCCcCcccCcccccCCCEEEEEECcEEEEEEEEEEEEEEC
Confidence            44568999999999999999999999999999998874110        0000000                  1     


Q ss_pred             -------------------------cCCC-----------------------------cccc---ccC----C------C
Q psy3212          53 -------------------------KFVG-----------------------------HSHF---RNA----S------D   65 (177)
Q Consensus        53 -------------------------~fdG-----------------------------~~~F---~~~----~------~   65 (177)
                                               ++||                             .++|   +..    +      .
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~  184 (402)
T 3vf3_A          105 HGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLA  184 (402)
T ss_dssp             TSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCC----------
T ss_pred             CccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCCccceEEEeeccccccccccccc
Confidence                                     2244                             1355   111    0      3


Q ss_pred             CCCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-C-----CcEEEEeCCCCcEEeCHHHHHHHHHHh
Q psy3212          66 ENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-S-----NCQAIADTGTSLIIGPSKVIAELNKLI  139 (177)
Q Consensus        66 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~-----~~~ai~DSGt~~~~lP~~~~~~l~~~~  139 (177)
                      ...|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+. .     ...+++||||++++||.+++++|++++
T Consensus       185 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i  264 (402)
T 3vf3_A          185 SVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSI  264 (402)
T ss_dssp             ---EEEEESSCCGGGEEEEEEEEECSSBTTBEECEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHH
T ss_pred             CCCCEEEeCCcCcccccCceEEEeCCcCcEEEEEEeEEEECCEEecccccccCCCeEEEECCCCcccCCHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999765 1     568999999999999999999999999


Q ss_pred             CCcc----CCCCC---EEEcCCCCC-----CCccEEEEECCE------EEEeccCC
Q psy3212         140 GAVP----LANGP---AKVDCDNLD-----KMPNVDIILGGK------NFTLTRTN  177 (177)
Q Consensus       140 ~~~~----~~~g~---~~~~C~~~~-----~~p~l~f~~gg~------~~~l~~~d  177 (177)
                      ++..    ...+.   |.++|+...     .+|+|+|+|+|.      +++|+|++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~  320 (402)
T 3vf3_A          265 KAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQ  320 (402)
T ss_dssp             HHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEEEEECHHH
T ss_pred             hhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCceEEEEECHHH
Confidence            7652    12222   378998655     589999999886      58988763

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=100.00  E-value=3.3e-33  Score=229.97  Aligned_cols=175  Identities=24%  Similarity=0.429  Sum_probs=136.2

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCC--------CCCCCCC------------------C----
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN--------IACSVDK------------------D----   52 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~--------~~c~~~~------------------D----   52 (177)
                      +..+..|+++|+||||||+++|++||||+++||+|..|....        .++....                  |    
T Consensus        70 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~cc~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~i  149 (455)
T 3lpj_A           70 GKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSI  149 (455)
T ss_dssp             EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccccccCCcccCCCCCCcccCCccEEEEeCCeEEEEEEEEEEEEE
Confidence            345678999999999999999999999999999998874110        0000000                  1    


Q ss_pred             --------------------------cCCC-----------------------------cccc---ccC----------C
Q psy3212          53 --------------------------KFVG-----------------------------HSHF---RNA----------S   64 (177)
Q Consensus        53 --------------------------~fdG-----------------------------~~~F---~~~----------~   64 (177)
                                                ++||                             .++|   +..          .
T Consensus       150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~  229 (455)
T 3lpj_A          150 PHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVL  229 (455)
T ss_dssp             TTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHH
T ss_pred             CCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCCCceeEEEeccccccccccccc
Confidence                                      2244                             1355   111          0


Q ss_pred             CCCCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-C-----CcEEEEeCCCCcEEeCHHHHHHHHHH
Q psy3212          65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-S-----NCQAIADTGTSLIIGPSKVIAELNKL  138 (177)
Q Consensus        65 ~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~-----~~~ai~DSGt~~~~lP~~~~~~l~~~  138 (177)
                      ....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.++++.+. .     ...+++||||++++||++++++|+++
T Consensus       230 ~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~  309 (455)
T 3lpj_A          230 ASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKS  309 (455)
T ss_dssp             HSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHHHHHHH
T ss_pred             cCCCceEEECCcCcccccCceEEEecCCCceeEEEEeEEEECCEEccccccccCCCeEEEECCCcceeCCHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999764 1     56899999999999999999999999


Q ss_pred             hCCccC----CC---CCEEEcCCCCCC-----CccEEEEECCE------EEEeccCC
Q psy3212         139 IGAVPL----AN---GPAKVDCDNLDK-----MPNVDIILGGK------NFTLTRTN  177 (177)
Q Consensus       139 ~~~~~~----~~---g~~~~~C~~~~~-----~p~l~f~~gg~------~~~l~~~d  177 (177)
                      +++...    ..   ..|.++|+....     +|+|+|+|+|.      +++|+|++
T Consensus       310 i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~  366 (455)
T 3lpj_A          310 IKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQ  366 (455)
T ss_dssp             HHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHH
T ss_pred             hhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCceEEEEECHHH
Confidence            976521    11   234789997654     89999999886      48888763

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=100.00  E-value=7.8e-33  Score=224.01  Aligned_cols=175  Identities=25%  Similarity=0.461  Sum_probs=135.0

Q ss_pred             ccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCC--------CCCCCCC------------------C---
Q psy3212           2 RSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILN--------IACSVDK------------------D---   52 (177)
Q Consensus         2 ~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~--------~~c~~~~------------------D---   52 (177)
                      ++..+..|+++|+||||+|++.|++||||+++||+|..|....        .++....                  |   
T Consensus        16 ~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~   95 (395)
T 2qp8_A           16 RGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVS   95 (395)
T ss_dssp             EEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CCCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcEEEEEEEeEEEE
Confidence            3456778999999999999999999999999999999885210        0000000                  1   


Q ss_pred             ---------------------------cCCC-----------------------------cccc---ccCC---------
Q psy3212          53 ---------------------------KFVG-----------------------------HSHF---RNAS---------   64 (177)
Q Consensus        53 ---------------------------~fdG-----------------------------~~~F---~~~~---------   64 (177)
                                                 ++||                             +++|   +...         
T Consensus        96 ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~  175 (395)
T 2qp8_A           96 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEV  175 (395)
T ss_dssp             CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHH
T ss_pred             ECCCCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHHHHHHccCCcceEEEEecccccccccccc
Confidence                                       1234                             1345   1110         


Q ss_pred             -CCCCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec------CCcEEEEeCCCCcEEeCHHHHHHHHH
Q psy3212          65 -DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC------SNCQAIADTGTSLIIGPSKVIAELNK  137 (177)
Q Consensus        65 -~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~------~~~~ai~DSGt~~~~lP~~~~~~l~~  137 (177)
                       ....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|+++.+.      ....+++||||++++||++++++|++
T Consensus       176 ~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~  255 (395)
T 2qp8_A          176 LASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVK  255 (395)
T ss_dssp             HHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHHHH
T ss_pred             ccCCCcEEEECCcCcccccCceEEeccCCCceEEEEEEEEEECCEEcccCccccCCceEEEEcCCCcEecCHHHHHHHHH
Confidence             14689999999999999999999999988999999999999998764      13689999999999999999999999


Q ss_pred             HhCCccCC----CC---CEEEcCCCCC-----CCccEEEEECCE------EEEeccC
Q psy3212         138 LIGAVPLA----NG---PAKVDCDNLD-----KMPNVDIILGGK------NFTLTRT  176 (177)
Q Consensus       138 ~~~~~~~~----~g---~~~~~C~~~~-----~~p~l~f~~gg~------~~~l~~~  176 (177)
                      ++++....    .+   .+.++|....     .+|+|+|+|+|.      +++|+|+
T Consensus       256 ~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~p~  312 (395)
T 2qp8_A          256 SIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ  312 (395)
T ss_dssp             HHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHH
T ss_pred             HHhhhcccccCCccccccccccccccccchHhhCCcEEEEEccCCCCceEEEEECHH
Confidence            99765211    11   2468998654     489999999875      6898875

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=100.00  E-value=7.2e-33  Score=224.82  Aligned_cols=174  Identities=17%  Similarity=0.365  Sum_probs=135.2

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCC-----------CCCCC-----------------CCCCCCCC---
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQ-----------HCSIL-----------------NIACSVDK---   51 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-----------~c~~~-----------------~~~c~~~~---   51 (177)
                      |+.+.+|+++|.||||||++.|+|||||+++||+|.           .|...                 ...|....   
T Consensus        17 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~~~~~~~~   96 (403)
T 3aup_A           17 DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGL   96 (403)
T ss_dssp             CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTBCSSEEEE
T ss_pred             CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCCCCCCccee
Confidence            778999999999999999999999999999999998           55410                 00111100   


Q ss_pred             -----------------C---------------------------------------cCCC-------------------
Q psy3212          52 -----------------D---------------------------------------KFVG-------------------   56 (177)
Q Consensus        52 -----------------D---------------------------------------~fdG-------------------   56 (177)
                                       |                                       .+||                   
T Consensus        97 ~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~  176 (403)
T 3aup_A           97 MSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHF  176 (403)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTTSHHHHHHHHH
T ss_pred             EeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCcCHHHHHHhhc
Confidence                             1                                       1233                   


Q ss_pred             --cccc---ccCCCCCCcEEEEcccCCCCe--e-e-----eeeEEecCcc--cceEEEEeEEEEcCeEe-c--CC-----
Q psy3212          57 --HSHF---RNASDENGGEIMFGGVDKDKF--V-G-----DITYSPVSRK--GYWQFGVESIKIEKNVY-C--SN-----  113 (177)
Q Consensus        57 --~~~F---~~~~~~~~G~l~fGg~d~~~~--~-g-----~l~~~p~~~~--~~w~v~~~~i~v~~~~~-~--~~-----  113 (177)
                        +++|   +.......|.|+||| |+++|  . |     +|.|+|+...  .+|.|.+++|+|+++.+ .  ..     
T Consensus       177 ~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~  255 (403)
T 3aup_A          177 GLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIV  255 (403)
T ss_dssp             TCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECTTSCEEECEEEEEETTEEEECC--------
T ss_pred             CCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCCCCcceEEEEEEEECCEEcccCChhHeeec
Confidence              3566   223235789999999 99888  5 6     9999999865  89999999999999877 3  22     


Q ss_pred             ----cEEEEeCCCCcEEeCHHHHHHHHHHh----CCccC----CCCCEEEcCCCCCCCccEEEEECCE---EEEeccCC
Q psy3212         114 ----CQAIADTGTSLIIGPSKVIAELNKLI----GAVPL----ANGPAKVDCDNLDKMPNVDIILGGK---NFTLTRTN  177 (177)
Q Consensus       114 ----~~ai~DSGt~~~~lP~~~~~~l~~~~----~~~~~----~~g~~~~~C~~~~~~p~l~f~~gg~---~~~l~~~d  177 (177)
                          ..+||||||++++||++++++|++++    ++...    ....|.++|+....+|.|+|+|+|.   +++|+|++
T Consensus       256 ~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~~~~~~P~i~f~f~g~~~~~~~l~~~~  334 (403)
T 3aup_A          256 GSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGED  334 (403)
T ss_dssp             ----CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGGGCCCCCCEEEEESSTTCCEEEECHHH
T ss_pred             cCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECCCcCcCCcEEEEEcCCCceEEEEcccc
Confidence                24999999999999999999999999    33211    1345889999777899999999885   99999864

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=100.00  E-value=1.7e-32  Score=208.45  Aligned_cols=141  Identities=46%  Similarity=0.910  Sum_probs=117.7

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||++.|++||||+++||+|..|.. ...|..+.                             
T Consensus         7 l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~   85 (239)
T 1b5f_A            7 LTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCIN-SKACRAHSMYESSDSSTYKENGTFGAIIYGTGSITGF   85 (239)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS-CHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             eeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCC-CcccCCCCCCCCccCCCeeeCCcEEEEEECCCcEEEE
Confidence            578999999999999999999999999999999999999851 12343222                             


Q ss_pred             ---C----------------------------cCCC------------------------cccc---ccC--CCCCCcEE
Q psy3212          52 ---D----------------------------KFVG------------------------HSHF---RNA--SDENGGEI   71 (177)
Q Consensus        52 ---D----------------------------~fdG------------------------~~~F---~~~--~~~~~G~l   71 (177)
                         |                            ++||                        +++|   +..  .....|.|
T Consensus        86 ~~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l  165 (239)
T 1b5f_A           86 FSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGEL  165 (239)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEE
T ss_pred             EEEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEE
Confidence               1                            2344                        3455   222  13568999


Q ss_pred             EEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc
Q psy3212          72 MFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVIAELNKLIGAV  142 (177)
Q Consensus        72 ~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~  142 (177)
                      +|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+.   ....+++||||+++++|++++++|+++++++
T Consensus       166 ~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i~~~iga~  239 (239)
T 1b5f_A          166 VFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN  239 (239)
T ss_dssp             EETSCCGGGEEEEEEEEEEEEETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHHHHHTTCC
T ss_pred             EECCcChhhccCceEEEEcccCCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHHHHHHHHHHhCCC
Confidence            9999999999999999999988999999999999998763   5679999999999999999999999999874

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A

Probab=99.97  E-value=2.5e-32  Score=222.15  Aligned_cols=175  Identities=22%  Similarity=0.331  Sum_probs=132.9

Q ss_pred             cccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCC-----------CCC------C-----------CCCCCCC---
Q psy3212           3 SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC-----------SIL------N-----------IACSVDK---   51 (177)
Q Consensus         3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c-----------~~~------~-----------~~c~~~~---   51 (177)
                      +..+.+|+++|+||||||++.|++||||+++||+|..|           ...      .           ..|....   
T Consensus        16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~~~~~c~~~~c~~   95 (413)
T 3vla_A           16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGV   95 (413)
T ss_dssp             CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSSCCCTTCEECBTTSHHHHHTTCCEEECCSSCCBTTBCSSEEEE
T ss_pred             cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCCCCCCCcCccCCCcccccccccCCCcccccCCCCCCCCCcCcc
Confidence            56788999999999999999999999999999999543           210      0           1121110   


Q ss_pred             -----------------C------------------------------------cCCC---------------------c
Q psy3212          52 -----------------D------------------------------------KFVG---------------------H   57 (177)
Q Consensus        52 -----------------D------------------------------------~fdG---------------------~   57 (177)
                                       |                                    .+||                     +
T Consensus        96 ~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dGIlGLg~~~lSl~sql~~~~~i~  175 (413)
T 3vla_A           96 FPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFK  175 (413)
T ss_dssp             CCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCEEEECSSSSSSHHHHHHHHHTCC
T ss_pred             eeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccccccccCCCCcchHHHHhhhcCCC
Confidence                             1                                    1344                     2


Q ss_pred             ccc---ccCCCCCCcEEEEcccCCC-----Ceeee-eeEEecCcc--------------cceEEEEeEEEEcCeEec-C-
Q psy3212          58 SHF---RNASDENGGEIMFGGVDKD-----KFVGD-ITYSPVSRK--------------GYWQFGVESIKIEKNVYC-S-  112 (177)
Q Consensus        58 ~~F---~~~~~~~~G~l~fGg~d~~-----~~~g~-l~~~p~~~~--------------~~w~v~~~~i~v~~~~~~-~-  112 (177)
                      ++|   +.......|.|+||++|..     +|.|+ +.|+|+.++              .+|.|++++|+||++.+. . 
T Consensus       176 ~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~  255 (413)
T 3vla_A          176 RKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNT  255 (413)
T ss_dssp             SEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCG
T ss_pred             ceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCc
Confidence            677   3333457899999999875     37888 999999854              699999999999999765 2 


Q ss_pred             ---------CcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC-------CCCCEEEcCCCCC---------CCccEEEEEC
Q psy3212         113 ---------NCQAIADTGTSLIIGPSKVIAELNKLIGAVPL-------ANGPAKVDCDNLD---------KMPNVDIILG  167 (177)
Q Consensus       113 ---------~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~-------~~g~~~~~C~~~~---------~~p~l~f~~g  167 (177)
                               ...+|+||||++++||++++++|.++++++..       ....+...|...+         .+|+|+|+|+
T Consensus       256 ~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~  335 (413)
T 3vla_A          256 SLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQ  335 (413)
T ss_dssp             GGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCCEETTEECCCCEEEECS
T ss_pred             hhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCccccccccCCCcEEEEEc
Confidence                     36899999999999999999999999865411       1122345676543         6899999999


Q ss_pred             C--EEEEeccCC
Q psy3212         168 G--KNFTLTRTN  177 (177)
Q Consensus       168 g--~~~~l~~~d  177 (177)
                      |  ++++|+|++
T Consensus       336 g~~~~~~l~~~~  347 (413)
T 3vla_A          336 SESVVWTITGSN  347 (413)
T ss_dssp             STTCEEEECHHH
T ss_pred             CCcEEEEeCccc
Confidence            8  899999863

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=99.95  E-value=6.9e-29  Score=200.08  Aligned_cols=111  Identities=20%  Similarity=0.272  Sum_probs=88.2

Q ss_pred             CCcEEEEcccCCC--CeeeeeeEEecCcc---cceEEEEeEEEEcCeEec-C-----CcEEEEeCCCCcEEeCHHHHHHH
Q psy3212          67 NGGEIMFGGVDKD--KFVGDITYSPVSRK---GYWQFGVESIKIEKNVYC-S-----NCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus        67 ~~G~l~fGg~d~~--~~~g~l~~~p~~~~---~~w~v~~~~i~v~~~~~~-~-----~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      ..|+|+|||+|..  +|.|++.|+|+.+.   .+|.|.+++|+|+++.+. .     ...+|+||||++++||++++++|
T Consensus       172 ~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l  251 (381)
T 1t6e_X          172 GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPL  251 (381)
T ss_dssp             SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHH
T ss_pred             CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHH
Confidence            6899999998765  58899999999853   467799999999998775 2     35799999999999999999999


Q ss_pred             HHHhCCc-c----------C--CCCCEEEcCCCCC---------CCccEEEEEC-CEEEEeccCC
Q psy3212         136 NKLIGAV-P----------L--ANGPAKVDCDNLD---------KMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       136 ~~~~~~~-~----------~--~~g~~~~~C~~~~---------~~p~l~f~~g-g~~~~l~~~d  177 (177)
                      .++++++ .          .  ....+..+|...+         .+|+|+|+|+ |++++|++++
T Consensus       252 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~  316 (381)
T 1t6e_X          252 MDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKN  316 (381)
T ss_dssp             HHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHH
T ss_pred             HHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCcCCeEEEEECCCcEEEeCCCe
Confidence            8888653 1          0  1122336786433         6899999997 5999999864

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=99.93  E-value=2.4e-25  Score=168.98  Aligned_cols=111  Identities=40%  Similarity=0.875  Sum_probs=102.5

Q ss_pred             CCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEe-c-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          67 NGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY-C-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~-~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      ..|+|+|||+|+++|.|++.|+|+.+..+|.|.+++|+++++.+ + .+..+++||||+++++|++++++|++++++...
T Consensus        72 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~  151 (241)
T 1lya_B           72 PGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL  151 (241)
T ss_dssp             SCEEEEETSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEE
T ss_pred             CCcEEEECCcCHHHcCCceEEEECccccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeec
Confidence            38999999999999999999999999999999999999999864 4 778999999999999999999999999988854


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ..|.|.++|+..+++|+|+|+|+|++++|||++
T Consensus       152 ~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~  184 (241)
T 1lya_B          152 IQGEYMIPCEKVSTLPAITLKLGGKGYKLSPED  184 (241)
T ss_dssp             ETTEEEEEGGGGGGSCCEEEEETTEEEEECTTT
T ss_pred             cCCcEEEECCCCccCCeEEEEECCEEEEECHHH
Confidence            568899999977789999999999999999985

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*

Probab=99.67  E-value=3.4e-17  Score=107.29  Aligned_cols=50  Identities=60%  Similarity=1.199  Sum_probs=43.2

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCC
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVD   50 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~   50 (177)
                      |.|+.+.+|+++|.||||||+|.|+|||||+++||+|..|......|..+
T Consensus         7 l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~   56 (97)
T 1lya_A            7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH   56 (97)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS
T ss_pred             eEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC
Confidence            56889999999999999999999999999999999999997322456543

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=98.05  E-value=1e-06  Score=55.80  Aligned_cols=31  Identities=45%  Similarity=0.838  Sum_probs=28.0

Q ss_pred             CCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         147 GPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       147 g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |.|.+||+..+++|+|+|+|+|++++|+|+|
T Consensus         1 G~y~v~C~~~~~~P~i~f~~gg~~~~l~~~~   31 (87)
T 1b5f_B            1 EELQVDCNTLSSMPNVSFTIGGKKFGLTPEQ   31 (87)
T ss_dssp             CCCEECGGGGGGCCCEEEEETTEEEEECHHH
T ss_pred             CcEEEECCCCCcCCcEEEEECCEEEEECHHH
Confidence            6799999987789999999999999999864

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...

Probab=93.12  E-value=0.17  Score=32.41  Aligned_cols=30  Identities=27%  Similarity=0.331  Sum_probs=25.8

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      +..|.||  +|.+++++|||..++-+...+..
T Consensus        10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~~p   39 (99)
T 2hs1_A           10 LVTIKIG--GQLKEALLDTGADDTIIEEMSLP   39 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSEEESCCSSC
T ss_pred             EEEEEEC--CEEEEEEeccCCCcEEEecccCC
Confidence            4679999  59999999999999999876654

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*

Probab=92.30  E-value=0.18  Score=32.61  Aligned_cols=27  Identities=15%  Similarity=0.320  Sum_probs=23.8

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQ   38 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~   38 (177)
                      +..|.||  +|.+++++|||+.++-+...
T Consensus        10 ~v~v~I~--Gq~~e~LLDTGAD~TVl~~~   36 (104)
T 1fmb_A           10 TTIVLIN--DTPLNVLLDTGADTSVLTTA   36 (104)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred             EEEEEEC--CEEEEEEeccCCCcEEEccc
Confidence            5789999  59999999999999999843

>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*

Probab=92.19  E-value=0.19  Score=32.97  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             EEEEEeC---CCCceEEEEEecCCCceEEeCCCCC
Q psy3212          10 YGTISLG---TPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        10 ~~~i~iG---tP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      ...|.||   +|+|.++.++|||..++-+...++.
T Consensus        12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~lP   46 (116)
T 3liy_A           12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFS   46 (116)
T ss_dssp             EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGSC
T ss_pred             eEEEEEccccCCCeEeEEEeccCCCccEEecccCC
Confidence            4566666   8899999999999999999987775

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=91.80  E-value=0.18  Score=34.37  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=25.7

Q ss_pred             CceEEEEEEeCCCCceEEEEEecCCCceEEeC
Q psy3212           6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPS   37 (177)
Q Consensus         6 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~   37 (177)
                      ...+++++.|+  ++++++++|||++.+.+..
T Consensus        24 ~~~~~v~v~In--G~~~~~LvDTGAs~s~is~   53 (148)
T 2i1a_A           24 VPMLYINIEIN--NYPVKAFVDTGAQTTIMST   53 (148)
T ss_dssp             CCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred             cceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence            44588999998  5899999999999998863

>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...

Probab=91.60  E-value=0.31  Score=31.16  Aligned_cols=30  Identities=20%  Similarity=0.251  Sum_probs=25.4

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      +..|.||  +|.+++++|||..++-+...+..
T Consensus        10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~~P   39 (99)
T 3ec0_A           10 VVTAYIE--GQPVEVLLDTGADDSIVAGIELG   39 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEESSCCCC
T ss_pred             eEEEEEC--CEEEEEEEecCCCceEEcCcccC
Confidence            4679999  59999999999999999766554

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=89.58  E-value=0.35  Score=33.21  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=25.9

Q ss_pred             ceEEEEEEeCCCCceEEEEEecCCCceEEeCC
Q psy3212           7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQ   38 (177)
Q Consensus         7 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~   38 (177)
                      ..|++++.|.  ++++++++|||++.+.+...
T Consensus        23 ~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~   52 (148)
T 3s8i_A           23 TMLYINCKVN--GHPLKAFVDSGAQMTIMSQA   52 (148)
T ss_dssp             CCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred             CEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence            3578999998  59999999999999998754

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=87.90  E-value=0.67  Score=31.39  Aligned_cols=29  Identities=24%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      +.++|+.+    .+++|||++.+.++.+.++.+
T Consensus        31 v~InG~~~----~~LvDTGAs~s~is~~~a~~l   59 (148)
T 2i1a_A           31 IEINNYPV----KAFVDTGAQTTIMSTRLAKKT   59 (148)
T ss_dssp             EEETTEEE----EEEECTTCSSCEEEHHHHHHH
T ss_pred             EEECCEEE----EEEEECCCCccccCHHHHHHc
Confidence            67788754    599999999999999988776

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=87.89  E-value=0.54  Score=32.24  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=24.7

Q ss_pred             EEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHH
Q psy3212         103 IKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL  135 (177)
Q Consensus       103 i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l  135 (177)
                      .++|++.+    .+++|||++.+.++.+.++++
T Consensus        29 ~~Ing~~v----~~LVDTGAs~s~Is~~~A~rl   57 (148)
T 3s8i_A           29 CKVNGHPL----KAFVDSGAQMTIMSQACAERC   57 (148)
T ss_dssp             EEETTEEE----EEEECTTCSSCEEEHHHHHHT
T ss_pred             EEECCEEE----EEEEeCCCCcEeeCHHHHHHc
Confidence            55777655    599999999999999999887

>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*

Probab=87.80  E-value=0.62  Score=30.62  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=23.0

Q ss_pred             EEeCCCCceEEEEEecCCCceEEeCCCC
Q psy3212          13 ISLGTPPQEFKVIFDTGSSNLWIPSQHC   40 (177)
Q Consensus        13 i~iGtP~q~~~v~~DTGS~~~wv~~~~c   40 (177)
                      |.||  +|.+++++|||..++-+...+.
T Consensus        18 ikI~--Gq~~eaLLDTGAD~TVi~~~~~   43 (116)
T 2hah_A           18 IFVN--GYPIKFLLDTGADITVLNRRDF   43 (116)
T ss_dssp             EEET--TEEEEEEECTTCSSCEEEGGGC
T ss_pred             EEEC--CEEEEEEecCCCCcEEEccccc
Confidence            8999  5999999999999999986554

>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A

Probab=87.28  E-value=0.82  Score=29.92  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      ...|.||  +|.+++++|||..++-+...+..
T Consensus        11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~lp   40 (114)
T 3sqf_A           11 SLTLWLD--DKMFTGLINTGADVTIIKLEDWP   40 (114)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEEGGGSC
T ss_pred             eEEEEEC--CEEEEEEEccCCCceEEecccCC
Confidence            5678999  59999999999999999876664

>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*

Probab=85.31  E-value=1.4  Score=29.62  Aligned_cols=30  Identities=20%  Similarity=0.230  Sum_probs=24.9

Q ss_pred             EEEEEEeCCCCceEEEEEecCCCceEEeCCCC
Q psy3212           9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC   40 (177)
Q Consensus         9 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c   40 (177)
                      =++.+.|+  +|.+++++|||.+.+-+.....
T Consensus        23 P~v~i~I~--G~~~~~LlDTGAd~tVl~~~~~   52 (132)
T 3slz_A           23 PRITLKVG--GQPVTFLVDTGAQHSVLTQNPG   52 (132)
T ss_dssp             SEEEEEET--TEEEEEEECTTCSSCEECSCCC
T ss_pred             CEEEEEEC--CEEEEEEEeCCCCeEEEccccC
Confidence            35678999  5999999999999999975543

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=84.23  E-value=2.7  Score=32.21  Aligned_cols=44  Identities=18%  Similarity=0.143  Sum_probs=33.3

Q ss_pred             eeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHH
Q psy3212          82 VGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        82 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~  132 (177)
                      .|.+...|+.....|.++   |.||.+.+    .+++|||++.+++|....
T Consensus         3 ~g~v~~~~~~~~~~Y~~~---i~iG~Q~~----~v~~DTGSs~lWv~~~~C   46 (323)
T 1bxo_A            3 SGVATNTPTANDEEYITP---VTIGGTTL----NLNFDTGSADLWVFSTEL   46 (323)
T ss_dssp             CEEEEEEECGGGSCEEEE---EEETTEEE----EEEEETTCCCEEECBTTS
T ss_pred             CCceeeeecCCCCEEEEE---EEECCEEE----EEEEeCCCcceEEecCCC
Confidence            366777787777778765   77885544    699999999999996543

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=82.39  E-value=3.2  Score=31.77  Aligned_cols=43  Identities=19%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             eeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHH
Q psy3212          83 GDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        83 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~  132 (177)
                      |.+...|+.....|.++   |.+|.+.+    .+++|||++.+++|....
T Consensus         4 ~~v~~~~~~~~~~Y~~~---i~iG~q~~----~v~~DTGSs~lWv~~~~C   46 (323)
T 1izd_A            4 GSVTTNPTSNDEEYITQ---VTVGDDTL----GLDFDTGSADLWVFSSQT   46 (323)
T ss_dssp             EEEEEEECGGGCCEEEE---EEETTEEE----EEEEETTCCCEEECBTTS
T ss_pred             CceeeeEcCCCCEEEEE---EEECCEEE----EEEEcCCCcceEEecCCC
Confidence            56667777767778665   77885444    699999999999996543

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=82.11  E-value=3.2  Score=31.84  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=32.2

Q ss_pred             eeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHH
Q psy3212          83 GDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        83 g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~  132 (177)
                      |.+.-.|+.....|.++   |.+|.+.+    .+++|||++.+++|....
T Consensus         3 ~~v~~~~~~~~~~Y~~~---i~iG~Q~~----~v~~DTGSs~lWv~~~~C   45 (325)
T 1ibq_A            3 GSAVTTPQNNDEEYLTP---VTVGKSTL----HLDFDTGSADLWVFSDEL   45 (325)
T ss_dssp             EEEEEEECTTTSCEEEE---EEEBTEEE----EEEEETTCCCEEEECTTS
T ss_pred             ceEEeEEcCCCCEEEEE---EEECCEEE----EEEEeCCCccceEeeCCC
Confidence            56666777777778766   67775544    699999999999996543

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*

Probab=81.64  E-value=2.8  Score=26.30  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=24.7

Q ss_pred             EecC--cccceEEEEeEEEEc--CeEecCCcEEEEeCCCCcEEeCHH
Q psy3212          88 SPVS--RKGYWQFGVESIKIE--KNVYCSNCQAIADTGTSLIIGPSK  130 (177)
Q Consensus        88 ~p~~--~~~~w~v~~~~i~v~--~~~~~~~~~ai~DSGt~~~~lP~~  130 (177)
                      .|+.  .+..|.++   |.||  .+.    ..++||||++.+++|..
T Consensus         5 ~~l~n~~~~~Y~~~---i~iGTP~Q~----~~v~~DTGSs~lWv~~~   44 (97)
T 1lya_A            5 EVLKNYMDAQYYGE---IGIGTPPQC----FTVVFDTGSSNLWVPSI   44 (97)
T ss_dssp             EEEEEETTTEEEEE---EEETTTTEE----EEEEEETTCCCEEEEBT
T ss_pred             EeeEECCCCeEEEE---EEECCCCeE----EEEEEeCCCCceEEeEc
Confidence            4453  34456554   7777  333    36999999999999954

>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*

Probab=81.41  E-value=2.2  Score=28.32  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=21.1

Q ss_pred             eCCCCceEEEEEecCCCceEEeCCCCC
Q psy3212          15 LGTPPQEFKVIFDTGSSNLWIPSQHCS   41 (177)
Q Consensus        15 iGtP~q~~~v~~DTGS~~~wv~~~~c~   41 (177)
                      ||  +|.++.++|||..++.+...+..
T Consensus        27 i~--gq~~eaLLDTGAD~TVl~~~~lP   51 (124)
T 2rsp_A           27 QR--SVYITALLDSGADITIISEEDWP   51 (124)
T ss_dssp             CS--EEEEEEEECTTCSSCEEETTTSC
T ss_pred             CC--CEEEEEEecCCCCcEEEecccCC
Confidence            66  48889999999999999876664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	5e-21
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	2e-11
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	1e-20
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	9e-15
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	5e-20
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	4e-13
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	2e-18
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	2e-16
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	4e-18
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	2e-14
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	6e-18
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	1e-15
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	6e-18
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	8e-14
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	2e-17
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	9e-15
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	9e-17
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	4e-14
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	2e-16
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	5e-16
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	2e-16
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	8e-15
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	2e-16
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	8e-15
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	3e-16
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	2e-14
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	8e-16
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	2e-14
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	1e-15
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	9e-12
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	3e-15
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	2e-13
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	3e-15
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	3e-11
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	4e-15
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	2e-14
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	3e-14
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	2e-09
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	1e-13
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	1e-12
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	3e-11
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	1e-10
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	1e-07

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 86.2 bits (212), Expect = 5e-21
 Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 2/119 (1%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQ 115
           S + +++D++G  ++ GG+D   + G + + PVS +GYWQ  ++SI ++         CQ
Sbjct: 196 SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQ 255

Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           AI DTGTSL+ GP+  IA +   IGA   ++G   + C ++D +P++   + G  + L+
Sbjct: 256 AIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLS 314

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 24/41 (58%), Positives = 32/41 (78%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
          + +    +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS 90

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score = 84.6 bits (208), Expect = 1e-20
 Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 49  VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
           +D+ +F  +    +   ENGGE  FGG+D+ KF GDIT+ PV RK YW+   E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206

Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
                +  A  DTGTSLI  PS +   +N  IGA     G   +DC+  D +P++     
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFN 266

Query: 168 GKNFTLT 174
           G NFT+ 
Sbjct: 267 GYNFTIG 273

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score = 68.4 bits (166), Expect = 9e-15
 Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 2/48 (4%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          + +   AQYY  I+LGTPPQ FKVI DTGSSNLW+PS  C   ++AC 
Sbjct: 7  LTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACF 52

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.5 bits (192), Expect = 2e-18
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 52  DKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY- 110
            + V   ++       GGE++ GG D   + GD  Y  +S+   WQ  ++ + +  +   
Sbjct: 151 KEKVFSVYYNRGPHLLGGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLL 210

Query: 111 -CSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGK 169
               C+ + DTG+S I  P+  +  + + +GA         V C  +  +P++   LGG+
Sbjct: 211 CEEGCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGR 270

Query: 170 NFTLTRTN 177
            +TL+ T+
Sbjct: 271 AYTLSSTD 278

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.1 bits (178), Expect = 2e-16
 Identities = 29/48 (60%), Positives = 36/48 (75%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          + +   +QYYG I +GTPPQ FKVIFDTGS+NLW+PS  CS L +AC 
Sbjct: 9  LTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACG 56

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 77.7 bits (190), Expect = 4e-18
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 52  DKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVY 110
            + +   +   A +  GGE +FGG D  KF G +T  P+ + +G+W   V+   +  +  
Sbjct: 150 SRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTV 209

Query: 111 CSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKN 170
            S+   I DTGT+L+I P+ + A + +  GA    +G   + CD       +   + G +
Sbjct: 210 ASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDT-SAFKPLVFSINGAS 268

Query: 171 FTLT 174
           F ++
Sbjct: 269 FQVS 272

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 67.6 bits (164), Expect = 2e-14
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
             +YYG +++GTP ++F + FDTGSS+LWI S  C+
Sbjct: 13 NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT 49

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 77.3 bits (189), Expect = 6e-18
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 15  LGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFG 74
           LG  P +  V   +  ++  IP+   ++ +   ++  +          +     GE+ FG
Sbjct: 105 LGVGPVDLTVGTLSPHTSTSIPTVTDNLFS-QGTIPTNLLAVSFEPTTSESSTNGELTFG 163

Query: 75  GVDKDKFVGDITYSPVSR----KGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSK 130
             D  K+ G ITY+P++       YW               S+   I DTGT+L +  S 
Sbjct: 164 ATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAGIVDTGTTLTLIASD 223

Query: 131 VIAELNKLIGAVPLANGPA-KVDCDNLDKMPNVDIILGGKNFTLT 174
             A+  K  GAV   N    ++       + ++   +GG+ F LT
Sbjct: 224 AFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELT 268

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 70.7 bits (172), Expect = 1e-15
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 3  SSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
          ++    Y   + +G+P   + ++ DTGSSN W+ +    +     S   DK 
Sbjct: 8  TNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKV 59

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 75.8 bits (185), Expect = 2e-17
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY-CSNCQA 116
           S + +    NG E+M GGVD   + G I + PV+ + YWQ  ++ I +      C  CQA
Sbjct: 152 SFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQA 211

Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           I DTGTS I+ P   +A + K IGA     G    +C ++  +P++   + G    L 
Sbjct: 212 IVDTGTSKIVAPVSALANIMKDIGASEN-QGEMMGNCASVQSLPDITFTINGVKQPLP 268

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 68.5 bits (166), Expect = 9e-15
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 2/48 (4%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          M++    +YYG IS+GTPP+ FKVIFDTGSSNLW+ S HCS    ACS
Sbjct: 6  MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS--AQACS 51

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 9e-17
 Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 57  HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNC 114
                   +     +  G +D   + G + + PV+ + YWQF V+S+ I   V      C
Sbjct: 152 LFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGC 211

Query: 115 QAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
           QAI DTGTS ++GPS  I  + + IGA     G   +DCDNL  MP V   + GK + LT
Sbjct: 212 QAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLT 271

Query: 175 RTN 177
            + 
Sbjct: 272 PSA 274

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 4e-14
 Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 2/48 (4%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          + +   +QY+G I LGTPPQEF V+FDTGSS+ W+PS +C   + AC 
Sbjct: 8  LTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACK 53

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 73.4 bits (179), Expect = 2e-16
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 3/152 (1%)

Query: 26  FDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDI 85
           F    +   +       L     ++K+ +   S + N+ D + G+I+FGGVD  K+ G +
Sbjct: 128 FTADEAGYNLYDNVPVTLKKQGIINKNAY---SLYLNSEDASTGKIIFGGVDNAKYTGTL 184

Query: 86  TYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLA 145
           T  PV+     +  + SI  +     +N   + D+GT++         +  +++GA   +
Sbjct: 185 TALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDS 244

Query: 146 NGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
                           V     G   T+  + 
Sbjct: 245 RNEIYRLPSCDLSGDAVFNFDQGVKITVPLSE 276

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 68.4 bits (166), Expect = 8e-15
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
          +    Y   I +G+  Q+  V+ DTGSS+LW+                +       F
Sbjct: 9  NEGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTF 65

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 73.5 bits (179), Expect = 2e-16
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAI 117
           + +    D + G +  GG+++  + G+ITY  ++   YWQ  ++    ++         I
Sbjct: 201 TFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQT--MEKANVI 258

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            D+GT+ I  PS+ + +    +  + +   P  V   +  +MP ++       +TL 
Sbjct: 259 VDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLE 315

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 68.8 bits (167), Expect = 8e-15
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 7   AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
             +YG   +G   Q+F +IFDTGS+NLW+PS+ C+  +  CS+  
Sbjct: 60  IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSIKN 102

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 3e-16
 Identities = 28/44 (63%), Positives = 32/44 (72%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
             QYYG I +GTPPQ FKV+FDTGSSN+W+PS  CS L  AC 
Sbjct: 13 MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV 56

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 2e-14
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 57  HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS--NC 114
           ++     S   GG+I+ GG D   + G+  Y  + + G WQ  ++ + +  +       C
Sbjct: 159 YNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGC 218

Query: 115 QAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            A+ DTG S I G +  I +L + +GA         V C+    +P++   LGGK +TLT
Sbjct: 219 LALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEYTLT 277

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 71.6 bits (174), Expect = 8e-16
 Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 51  KDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY 110
            D        R+  +  GGEI+FGG+D   +VG+ TY PV++KGYWQF +  + +     
Sbjct: 151 SDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKST 210

Query: 111 C---SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
                 C AIAD+GTSL+ GP+ +I E+N+ IGA     G + VDC +L  MP+++  +G
Sbjct: 211 GFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGSPMGESAVDCGSLGSMPDIEFTIG 270

Query: 168 GKNFTLT 174
           GK F L 
Sbjct: 271 GKKFALK 277

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 67.4 bits (163), Expect = 2e-14
 Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 1  MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
          +++   AQY+G I +GTPPQ+F VIFDTGSSNLW+PS  C   +IAC 
Sbjct: 9  LKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCY-FSIACY 55

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 71.1 bits (173), Expect = 1e-15
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
           Q  Y   I++G+  Q+  VI DTGSS+LW+P  +            D       +
Sbjct: 10 EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTY 65

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 59.9 bits (144), Expect = 9e-12
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNCQA 116
           S + N+ D   G+I+FGGVD  K+ G +   PV+     +  + S+++  K +   N   
Sbjct: 156 SLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDV 215

Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVPLANGPA-KVDCDNLDKMPNVDIIL-GGKNFTLT 174
           + D+GT++      +  ++ K        +         + +   +V          ++ 
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAKISVP 275

Query: 175 RTN 177
            + 
Sbjct: 276 ASE 278

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 69.6 bits (169), Expect = 3e-15
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIAC 47
          S    Y   + +GTP Q   + FDTGSS+LW+ S   +   +  
Sbjct: 12 SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDG 55

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 64.2 bits (155), Expect = 2e-13
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 57  HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCS-NC 114
                +      G   FG +D   + G ITY+ V +++G+W++      +    + S + 
Sbjct: 155 PVFTADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSI 214

Query: 115 QAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
             IADTGT+L+  P+ V++     +     ++            +P+    +G     + 
Sbjct: 215 DGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIP 274

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 69.6 bits (169), Expect = 3e-15
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGT 122
                G   FG  D  K+ G ITY+ V + +G+W F  +   I  +    +   IADTGT
Sbjct: 158 KHNAPGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGT 217

Query: 123 SLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
           +L++    ++    + +      +        +   +P+  + +G    T+    
Sbjct: 218 TLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEY 272

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIAC 47
          S   +Y   +++G       + FDTGS++LW+ S        + 
Sbjct: 12 SNDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSERSG 53

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score = 69.7 bits (169), Expect = 4e-15
 Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 58  SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAI 117
           + +    D++ G +  GG+++  + G +TY  ++   YWQ  +++     N+       I
Sbjct: 155 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVG--NIMLEKANCI 212

Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
            D+GTS I  P+  + ++ + +  + +   P  V   N  K+P  +       +TL 
Sbjct: 213 VDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLE 269

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score = 67.4 bits (163), Expect = 2e-14
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 5  YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
              +YG   +G   Q F  I DTGS+NLW+PS  C+     C 
Sbjct: 12 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT--TAGCL 53

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 6  QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
            +Y   +S+GTP Q+F ++FDTGSS+ W+P + C 
Sbjct: 13 LEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCD 48

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 64  SDENGGEIMFGGVDKDKFVGDITYSPVSRK----GYWQFGVESIKIEKNVYC---SNCQA 116
           +++ GG+++FGGV+     GDI Y+ V +      +W   V  +KI+ +           
Sbjct: 171 TNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAF 230

Query: 117 IADTGTSLIIGPSKVIAELNKLIGA--VPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
             DTGT+  I PS    ++ K           G         D      ++L     +  
Sbjct: 231 TIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSD 290

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 1e-13
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 9  YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
          YY  +++G+PPQ   ++ DTGSSN  + +    
Sbjct: 16 YYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP 48

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 48  SVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK 107
           S+         +        GG ++ GG+D   + G + Y+P+ R+ Y++  +  ++I  
Sbjct: 153 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEING 212

Query: 108 NVYCSNC------QAIADTGTSLIIGPSKVIAELNKLIGAVPLANG------------PA 149
                +C      ++I D+GT+ +  P KV     K I A                    
Sbjct: 213 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCW 272

Query: 150 KVDCDNLDKMPNVDIILGGKNF 171
           +      +  P + + L G+  
Sbjct: 273 QAGTTPWNIFPVISLYLMGEVT 294

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 4   SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNA 63
           +   +Y   +++G       + FDTGS++LW+ S        A           S     
Sbjct: 12  ANDEEYITPVTIGGTT--LNLNFDTGSADLWVFSTELP----ASQQSGHSVYNPSATGKE 65

Query: 64  SDENGGEIMFG-GVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS 112
                  I +G G      V   + +      + Q    + +I       
Sbjct: 66  LSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQD 115

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 51  KDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNV 109
           K              +  G   FG +D  K+ G +TY+ V + +G+W F V+S     + 
Sbjct: 145 KSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTA-GSQ 203

Query: 110 YCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGK 169
                  IADTGT+L++    V+++    +      +       D    +P+  + + G 
Sbjct: 204 SGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFSVSISGY 263

Query: 170 NFTLT 174
             T+ 
Sbjct: 264 TATVP 268

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 4/38 (10%), Positives = 8/38 (21%), Gaps = 5/38 (13%)

Query: 4  SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
             + Y      G       ++ D     +W       
Sbjct: 11 PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	100.0
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	100.0
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	100.0
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	100.0
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	100.0
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	100.0
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	100.0
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	100.0
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	100.0
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	100.0
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	100.0
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	100.0
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	100.0
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	100.0
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	100.0
g1b5f.1	326	Plant acid proteinase, phytepsin {Cynara carduncul	100.0
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	99.97
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	99.92
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	93.59
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	92.7
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	91.65
d4fiva_	113	Feline immunodeficiency virus (FIV) protease {Feli	89.95
d2nmza1	99	Human immunodeficiency virus type 1 protease {Huma	89.49
d2fmba_	104	EIAV protease {Equine infectious anemia virus [Tax	88.95
d3ecga1	99	Human immunodeficiency virus type 2 (HIV-2) protea	88.33
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	80.77

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=100.00  E-value=3.5e-39  Score=252.57  Aligned_cols=175  Identities=45%  Similarity=0.776  Sum_probs=152.7

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|.||||||++.|++||||+++||+|..|..  ..|..+.                             
T Consensus         7 l~n~~~~~Y~~~i~iGtP~q~~~~~iDTGSs~~Wv~~~~C~~--~~c~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~   84 (329)
T d1dpja_           7 LTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGS--LACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGY   84 (329)
T ss_dssp             CEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCS--HHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             eEEccCCEEEEEEEEeCCCeEEEEEEECCcccEEEECCCCCC--ccccCCCcCCcccCCceeECCeeEEEEccCceEEEE
Confidence            689999999999999999999999999999999999999972  2333222                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc------ccCCCC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF------RNASDE   66 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F------~~~~~~   66 (177)
                         |                            .++|                            ++.|      ......
T Consensus        85 ~~~D~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~  164 (329)
T d1dpja_          85 ISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTE  164 (329)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCS
T ss_pred             EEEEEEEecceEEeeEEEEEEeeccCccccccccccccccccCccccccCCchhhhHhhccCcccceEEEEEEecCCCcC
Confidence               1                            2233                            3445      123446


Q ss_pred             CCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCC
Q psy3212          67 NGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLA  145 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~  145 (177)
                      ..|.|+|||+|++++.+++.|+|+....+|.|.++++.++++.+. .+..++|||||+++++|++++++|.+++++....
T Consensus       165 ~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~~  244 (329)
T d1dpja_         165 NGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGW  244 (329)
T ss_dssp             SSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECT
T ss_pred             CCCceECCCCchhhccCceeEecccccceeEEEEeeEEECCeEeeeeecccccCcccceeeCCHHHHHHHHHHhCCcccc
Confidence            679999999999999999999999999999999999999999887 8889999999999999999999999999988777


Q ss_pred             CCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         146 NGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       146 ~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .+.|.++|+...++|+|+|+|+|++++|+|++
T Consensus       245 ~~~~~~~c~~~~~~P~i~f~f~g~~~~l~p~~  276 (329)
T d1dpja_         245 TGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYD  276 (329)
T ss_dssp             TSSEEECGGGGGGCCCEEEEETTEEEEECTTT
T ss_pred             ceeEEEeccccCccceEEEEECCEEEEECHHH
Confidence            88999999987789999999999999999986

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.2e-39  Score=259.87  Aligned_cols=175  Identities=40%  Similarity=0.839  Sum_probs=149.0

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||++.|++||||+++||+|..|..+  .|..+.                             
T Consensus        50 l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~--~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~  127 (370)
T d3psga_          50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSL--ACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGI  127 (370)
T ss_dssp             TGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSG--GGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEE
T ss_pred             cccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCc--ccccccccCCCcccccccCCCcEEEEeCCceEEEE
Confidence            6789999999999999999999999999999999999999832  233322                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCCCCc
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDENGG   69 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~~~G   69 (177)
                         |                            .++|                            +++|   ........|
T Consensus       128 ~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g  207 (370)
T d3psga_         128 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGS  207 (370)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CE
T ss_pred             EEEEEEeeeceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCc
Confidence               0                            2233                            3444   334456689


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG  147 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g  147 (177)
                      .|+|||+|++++.|++.|+|+.+..+|.+.++++.++++.+.  .+..+++||||+++++|++++++|++++++.....+
T Consensus       208 ~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~  287 (370)
T d3psga_         208 VVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDG  287 (370)
T ss_dssp             EEEETCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTC
T ss_pred             eEecCCcCchhcccceeEEeecccceEEEEEeeEEeCCeEEecCCCccEEEecCCceEeCCHHHHHHHHHHhCCeeecCC
Confidence            999999999999999999999999999999999999998776  778999999999999999999999999988866788


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|...+.+|+|+|+|+|++++|+|++
T Consensus       288 ~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~  317 (370)
T d3psga_         288 EMVISCSSIDSLPDIVFTIDGVQYPLSPSA  317 (370)
T ss_dssp             CEECCGGGGGGCCCEEEEETTEEEEECHHH
T ss_pred             cEEEeccccCCCceEEEEECCEEEEEChHH
Confidence            999999987789999999999999999864

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-39  Score=253.02  Aligned_cols=177  Identities=36%  Similarity=0.753  Sum_probs=152.4

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|.||||||++.|++||||+++||+|..|..+...|..+.                             
T Consensus         9 l~n~~~~~Y~~~i~iGtP~Q~~~l~~DTGSs~~Wv~~~~C~~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~Y~~gs~~G~   88 (335)
T d1smra_           9 LTNYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDDFTIHYGSGRVKGF   88 (335)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCGGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             ecccCCCEEEEEEEECCCCeEEEEEEECCcccEEEEcCCCCCccccccCCCcCCCccCcccccCCCcEEEEecCceEEEE
Confidence            679999999999999999999999999999999999999985544555433                             


Q ss_pred             ---C---------------------------cCCC----------------------------cccc---c-cCCCCCCc
Q psy3212          52 ---D---------------------------KFVG----------------------------HSHF---R-NASDENGG   69 (177)
Q Consensus        52 ---D---------------------------~fdG----------------------------~~~F---~-~~~~~~~G   69 (177)
                         |                           .++|                            ++.|   + .......|
T Consensus        89 ~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~g  168 (335)
T d1smra_          89 LSQDSVTVGGITVTQTFGEVTQLPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLLGG  168 (335)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCBSSSEEEEEECCSSSSCCE
T ss_pred             EEEEEEEecccccccEEEEEEecccccccccccccccccccccccccCCCchHHHHHHhcCccccceeEEeccCCCccce
Confidence               1                           2233                            3344   1 22344579


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG  147 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g  147 (177)
                      .|+||++|++++.|++.|+|+.+..+|.|.+.+|.+++..+.  ....++|||||+++++|++++++|++++++......
T Consensus       169 ~l~~G~~d~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~  248 (335)
T d1smra_         169 EVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQALGAKEKRLH  248 (335)
T ss_dssp             EEEESSCCGGGEEEEEEEEECSBTTTTEEEEEEEEETTSCCBCTTCEEEEECTTBSSEEECHHHHHHHHHHHTCEEEETT
T ss_pred             eEeccccCcccccCceeeeecccccceEEEEeEEEECCeeEeccCCceEEEeCCCCcccCCHHHHHHHHHHhCCeeccCC
Confidence            999999999999999999999999999999999999998765  778999999999999999999999999998866677


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|.++|...+.+|.|+|+|+|++++|||++
T Consensus       249 ~~~~~c~~~~~~P~i~f~f~g~~~~l~~~~  278 (335)
T d1smra_         249 EYVVSCSQVPTLPDISFNLGGRAYTLSSTD  278 (335)
T ss_dssp             EEEEEGGGGGGSCCEEEEETTEEEEECHHH
T ss_pred             ceeecccccCCCCccEEEECCeEEEEChHH
Confidence            899999988889999999999999999863

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=100.00  E-value=5.8e-38  Score=245.84  Aligned_cols=172  Identities=33%  Similarity=0.677  Sum_probs=146.4

Q ss_pred             Cccc-cCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC----------------------------
Q psy3212           1 MRSS-YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK----------------------------   51 (177)
Q Consensus         1 l~~~-~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~----------------------------   51 (177)
                      |.++ +|.+|+++|.||||||++.|++||||+++||+|..|.    .|..+.                            
T Consensus         8 l~~~~~d~~Y~~~i~iGtP~Q~~~v~vDTGS~~~Wv~~~~C~----~c~~~~~~y~~~~SsT~~~~~~~~~~~y~~g~~~   83 (325)
T d2apra_           8 MTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT----NCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSA   83 (325)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS----SCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEE
T ss_pred             eEecCCCcEEEEEEEEeCCCEEEEEEEECCCCcEEEeCCCCC----ccccCCCccCcccCCceeECCeEEEEEeCCCCeE
Confidence            3455 4589999999999999999999999999999999998    332211                            


Q ss_pred             ------C---------------------------cCCC-----------------------------cccc---c-cCCC
Q psy3212          52 ------D---------------------------KFVG-----------------------------HSHF---R-NASD   65 (177)
Q Consensus        52 ------D---------------------------~fdG-----------------------------~~~F---~-~~~~   65 (177)
                            |                           +++|                             +++|   + ....
T Consensus        84 ~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~~~~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~  163 (325)
T d2apra_          84 SGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKN  163 (325)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGGG
T ss_pred             EEEEEeeeEEeeeeeccCcceeeeeeecccccccccCcccccccccccccccCCcchhHHHhhccccceeEEEEeccCCC
Confidence                  1                           2333                             3455   1 2234


Q ss_pred             CCCcEEEEcccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          66 ENGGEIMFGGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        66 ~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      ...|.|+|||+|++++.|++.|+|+. +..+|.|.++++.+++..+.....+++||||++++||++++++|.+.+++...
T Consensus       164 ~~~g~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~v~l~~i~i~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~~~~~~~  243 (325)
T d2apra_         164 GGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDN  243 (325)
T ss_dssp             TCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTEEEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEEC
T ss_pred             CCCeEEEecCCCchhhccceeeEeecCCCceEEEEEeeEEECCEeecceeeeeccCCCccccCCHHHHHHHHHHhCCccc
Confidence            56799999999999999999999998 56799999999999999888788999999999999999999999999998877


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ..+.|.++|+. ..+|+|+|+|+|.+++|||++
T Consensus       244 ~~~~~~~~C~~-~~~p~i~f~f~g~~~~i~~~~  275 (325)
T d2apra_         244 GDGTYTISCDT-SAFKPLVFSINGASFQVSPDS  275 (325)
T ss_dssp             SSSCEEECSCG-GGCCCEEEEETTEEEEECGGG
T ss_pred             CCCceeecccC-CCCCcEEEEECCEEEEEChHH
Confidence            78899999985 468999999999999999975

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=242.36  Aligned_cols=176  Identities=38%  Similarity=0.741  Sum_probs=148.5

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+||.|.+|+++|+||||||++.|++||||+++||+|..|......|..+.                             
T Consensus         9 l~n~~d~~Y~~~i~iGtP~Q~~~~~~DTGS~~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~~~~~~g~~~G~   88 (337)
T d1hrna_           9 LTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGF   88 (337)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHSSCCBCGGGCSSCEEEEEEEEEEETTEEEEEE
T ss_pred             eEEcCCcEEEEEEEEeCCCEEEEEEEECCCcceEEEcCCCCCcccccccCCCCChhhCCceEECCccEEEEecCcEEEEE
Confidence            689999999999999999999999999999999999999985444444333                             


Q ss_pred             ---C---------------------------cCCC----------------------------cccc---c----cCCCC
Q psy3212          52 ---D---------------------------KFVG----------------------------HSHF---R----NASDE   66 (177)
Q Consensus        52 ---D---------------------------~fdG----------------------------~~~F---~----~~~~~   66 (177)
                         |                           .++|                            ++.|   +    .....
T Consensus        89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GilGl~~~~~~~~~~~~~~~~l~~~~~i~~~~f~~~l~~~~~~~~~  168 (337)
T d1hrna_          89 LSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQS  168 (337)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCHHHHTTCSSCEEEECSCGGGCGGGCCCHHHHHHTTTCBSSSEEEEEECCCCC---C
T ss_pred             EEEeeeeecCceeeeEEEEEEeccccccccccccccccccccccccCCCCcchhhHhhcCCCccceeeEEeccccCCCcc
Confidence               0                           2222                            2333   1    12234


Q ss_pred             CCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          67 NGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        67 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      ..|.|+||++|++++.+++.|+|+....+|.+.++++.+++....  ....+++||||++++||++++++|++++++.. 
T Consensus       169 ~~g~l~~G~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~-  247 (337)
T d1hrna_         169 LGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-  247 (337)
T ss_dssp             CCEEEEETSCCGGGEEEEEEEEEBSSTTSCEEEECEEEETTEEEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-
T ss_pred             cCceEEccccChhhcCCceeeeeeeccceeEEeecceeccccccccccCcceEEeCCCcceeccHHHHHHHHHHhCCcc-
Confidence            579999999999999999999999999999999999999998765  77889999999999999999999999998763 


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ..+.|.++|+..+.+|+|+|+|+|++++|||++
T Consensus       248 ~~~~~~~~c~~~~~~P~l~f~f~g~~~~l~p~~  280 (337)
T d1hrna_         248 RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSAD  280 (337)
T ss_dssp             CSSCEEEETTTGGGCCCEEEEETTEEEEECHHH
T ss_pred             cccceeeeccccCCCCceeEEECCEEEEEChHH
Confidence            356799999988889999999999999999864

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=100.00  E-value=1.4e-37  Score=247.51  Aligned_cols=172  Identities=28%  Similarity=0.589  Sum_probs=142.5

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||+|.|++||||+++||+|..|.  +..|..+.                             
T Consensus        54 l~n~~~~~Y~~~I~iGtP~Q~~~v~~DTGSs~lWv~~~~C~--~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~  131 (373)
T d1miqa_          54 LDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGF  131 (373)
T ss_dssp             GGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCC--SSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             eeeccCCEEEEEEEECCCCEEEEEEEECCchheEEECCCCC--CccccCCCccCCCCCCceeECCccEEEEeCCcEEEEE
Confidence            57899999999999999999999999999999999999998  34454443                             


Q ss_pred             ---C-----------------------------cCCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-----------------------------KFVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-----------------------------~fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                             .++|                            +++|   ........
T Consensus       132 ~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~  211 (373)
T d1miqa_         132 FSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHA  211 (373)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTE
T ss_pred             EEEEEEEEcCcceEeeEEEEEeccccCccccccccccccccccccccCCCccceehhhhhhhccccceEEEEeccCCCCC
Confidence               1                             1111                            3445   34445567


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANG  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g  147 (177)
                      |.++|||+|++++.|++.|+|+.+..+|.+.++ +.+++... ....+++||||+++++|++++++|++++++. ....+
T Consensus       212 g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~i~l~-~~~~~~~~-~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~  289 (373)
T d1miqa_         212 GYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM-EKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLP  289 (373)
T ss_dssp             EEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE-EEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSS
T ss_pred             ceeeccCCCchhccceeeEEeccccceEEEEEE-EEECcEec-CCcceEeccCCceeccCHHHHHHHHHHhCCeeccCCC
Confidence            899999999999999999999999999999986 66666544 4667999999999999999999999999887 44455


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|..+|+ ..++|+|+|+|+|++++|+|++
T Consensus       290 ~~~~~~~-~~~~P~itf~f~g~~~~l~p~~  318 (373)
T d1miqa_         290 FYVTTCD-NKEMPTLEFKSANNTYTLEPEY  318 (373)
T ss_dssp             CEEEETT-CTTCCCEEEECSSCEEEECGGG
T ss_pred             eeEeccc-cCCCceEEEEECCEEEEECHHH
Confidence            6666665 3689999999999999999975

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=100.00  E-value=1.8e-36  Score=236.59  Aligned_cols=174  Identities=41%  Similarity=0.795  Sum_probs=147.7

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|.||||+|++.|++||||+++||+|..|..  ..|..+.                             
T Consensus         6 ~~n~~d~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~~~~C~~--~~~~~~~~f~p~~Sst~~~~~~~~~~~y~~g~~~G~   83 (324)
T d1am5a_           6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSA--QACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGI   83 (324)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCS--HHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             eeccCCcEEEEEEEEcCCCeEEEEEEECCCcceEEecCCCCc--cccCCCCCCCcccCCceeECCcceEEEecCCceEEE
Confidence            678999999999999999999999999999999999999972  2233222                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc---ccCCCCCCc
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF---RNASDENGG   69 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F---~~~~~~~~G   69 (177)
                         |                            .++|                            ++.|   +.......|
T Consensus        84 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~gLg~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~~~~g  163 (324)
T d1am5a_          84 LGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGS  163 (324)
T ss_dssp             EEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCE
T ss_pred             EEEeecccCcccceeEEEEEeeeeccceeecccccccccccCcccccCCCCcHHHHHHhccCcccceEEEEecCCCCCCc
Confidence               0                            2233                            3444   334456689


Q ss_pred             EEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCC
Q psy3212          70 EIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP  148 (177)
Q Consensus        70 ~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~  148 (177)
                      .|+|||+|++++.+++.|+|+.+..+|.+.++++.+++..+. .+..++||||+++++||++++++|++++++... .+.
T Consensus       164 ~l~~Gg~d~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~~-~~~  242 (324)
T d1am5a_         164 EVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGASEN-QGE  242 (324)
T ss_dssp             EEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCEEC-CCC
T ss_pred             eEEeeccccccccCceEEeeccccceEEEEEeeEEeCCcccccCCcceeeccCcccccCCHHHHHHHHHHhCCccc-CCc
Confidence            999999999999999999999999999999999999999888 888999999999999999999999999987633 456


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +...|...+++|+|+|+|+|++++|||++
T Consensus       243 ~~~~~~~~~~~P~i~f~f~g~~~~l~~~~  271 (324)
T d1am5a_         243 MMGNCASVQSLPDITFTINGVKQPLPPSA  271 (324)
T ss_dssp             EECCTTSSSSSCCEEEEETTEEEEECHHH
T ss_pred             ccccccccccCCceEEEECCEEEEECHHH
Confidence            66777766789999999999999999863

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=100.00  E-value=4.1e-35  Score=230.59  Aligned_cols=171  Identities=25%  Similarity=0.414  Sum_probs=140.6

Q ss_pred             cCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCC-------CCCCCCCC--------------------------
Q psy3212           5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSIL-------NIACSVDK--------------------------   51 (177)
Q Consensus         5 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~-------~~~c~~~~--------------------------   51 (177)
                      .+..|+++|.||||||++.|++||||+++||++..|...       ...|..+.                          
T Consensus        10 ~~~~Y~~~i~iGtP~q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Y~~g~~   89 (334)
T d1j71a_          10 EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLTS   89 (334)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSCE
T ss_pred             CCCEEEEEEEEcCCCeEEEEEEECCCcceEEeeCCCCccccccccCCcccccCCcCCcccCCcccCCCcCEEEEeCCCce
Confidence            468899999999999999999999999999987655311       12233322                          


Q ss_pred             -------C---------------------cCCC------------------------------cccc---ccCCCCCCcE
Q psy3212          52 -------D---------------------KFVG------------------------------HSHF---RNASDENGGE   70 (177)
Q Consensus        52 -------D---------------------~fdG------------------------------~~~F---~~~~~~~~G~   70 (177)
                             |                     .++|                              +++|   +.......|.
T Consensus        90 ~~G~~~~D~~~~g~~~~~~~~f~~~~~~~~~~GilGlg~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~g~  169 (334)
T d1j71a_          90 SQGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGK  169 (334)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEE
T ss_pred             EEEEEEeeEEEEeeeeccCceeeeeeeeccccCccccccccccccccccchhhHHHHhccccccceEEEEeccCCCCCce
Confidence                   1                     2333                              3344   3334456799


Q ss_pred             EEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCCCE
Q psy3212          71 IMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANGPA  149 (177)
Q Consensus        71 l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g~~  149 (177)
                      |+|||+|++++.|++.|+|+.+..+|.+++++|++++..+..+..|+|||||++++||++++++|++.+++. ....+.|
T Consensus       170 l~lGg~d~~~~~g~~~~~~~~~~~~~~v~l~~i~v~g~~~~~~~~aiiDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~  249 (334)
T d1j71a_         170 IIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIY  249 (334)
T ss_dssp             EEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEETTTTEE
T ss_pred             EEecccChhhcccceeEeeeccccceEEeeceEEECCEEecccccccccCCCcceeccHHHHHHHHHHhCCEEcCCCCee
Confidence            999999999999999999999999999999999999998886778999999999999999999999999988 4556678


Q ss_pred             EEcCCCCCCCccEEEEEC-CEEEEeccCC
Q psy3212         150 KVDCDNLDKMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       150 ~~~C~~~~~~p~l~f~~g-g~~~~l~~~d  177 (177)
                      .++|.  +..|.++|+|+ |++++|||++
T Consensus       250 ~~~~~--~~~p~i~f~f~~g~~~~i~~~~  276 (334)
T d1j71a_         250 RLPSC--DLSGDAVFNFDQGVKITVPLSE  276 (334)
T ss_dssp             ECSSS--CCCSEEEEEESTTCEEEEEGGG
T ss_pred             ecccc--ccCCCceEEeCCCEEEEEChHH
Confidence            89887  46799999995 7999999975

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=8.2e-35  Score=229.03  Aligned_cols=170  Identities=25%  Similarity=0.440  Sum_probs=138.5

Q ss_pred             cCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCC-------CCCCCCCC--------------------------
Q psy3212           5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSIL-------NIACSVDK--------------------------   51 (177)
Q Consensus         5 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~-------~~~c~~~~--------------------------   51 (177)
                      ++..|+++|.||||||++.|++||||+++||+|..|...       ...|..+.                          
T Consensus        10 ~~~~Y~~~i~iGtP~Q~~~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~~~~~~~y~~~~Sst~~~~~~~~~~~Y~~g~~   89 (342)
T d1eaga_          10 EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDGSS   89 (342)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTSCE
T ss_pred             CCcEEEEEEEECCCCeEEEEEEECCCcceEEeecCCCccccccccCccccccCCcCCCccCcceeECCeeEEEEeCCCce
Confidence            578999999999999999999999999999988755310       11222211                          


Q ss_pred             -------C---------------------cCCC-----------------------------cccc---ccCCCCCCcEE
Q psy3212          52 -------D---------------------KFVG-----------------------------HSHF---RNASDENGGEI   71 (177)
Q Consensus        52 -------D---------------------~fdG-----------------------------~~~F---~~~~~~~~G~l   71 (177)
                             |                     .++|                             +++|   ........|.|
T Consensus        90 ~~G~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~Glg~~~~~~~~~~~~~~~~L~~q~~i~~~~fs~~l~~~~~~~G~l  169 (342)
T d1eaga_          90 SQGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQI  169 (342)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSCGGGCSSCSCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEE
T ss_pred             EEEEEEeeEEEeceEeeeeeEEEeeceeecccccccccccccccCCccCccceehhhcCCccceEEEEEcCCCCCCCceE
Confidence                   1                     1122                             3445   33334567999


Q ss_pred             EEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec-CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc--cC--CC
Q psy3212          72 MFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAV--PL--AN  146 (177)
Q Consensus        72 ~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~-~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~--~~--~~  146 (177)
                      +|||+|+.++.|++.|+|+.++.+|.+.+++|++|++.+. .+..++|||||+++++|++++++|.+++++.  ..  ..
T Consensus       170 ~~Gg~d~~~~~g~~~~~p~~~~~~w~v~l~~i~vgg~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~l~~~~~~~~~~~  249 (342)
T d1eaga_         170 IFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGN  249 (342)
T ss_dssp             EETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EEcccCchhccceEEEEecccccceEEEEeeEEECCEEecccccccccccCCccccCCHHHHHHHHHHhCccccccCCCC
Confidence            9999999999999999999999999999999999999888 7889999999999999999999999999776  22  23


Q ss_pred             CCEEEcCCCCCCCccEEEEEC-CEEEEeccCC
Q psy3212         147 GPAKVDCDNLDKMPNVDIILG-GKNFTLTRTN  177 (177)
Q Consensus       147 g~~~~~C~~~~~~p~l~f~~g-g~~~~l~~~d  177 (177)
                      ..|.++|+   ..|+|+|+|+ +.++.|||++
T Consensus       250 ~~~~~~c~---~~p~i~f~f~~~~~~~i~~~~  278 (342)
T d1eaga_         250 SFYEVDCN---LSGDVVFNFSKNAKISVPASE  278 (342)
T ss_dssp             EEEEEESC---CCSEEEEECSTTCEEEEEGGG
T ss_pred             ceeccccc---cCCCEEEEECCCEEEEEChHH
Confidence            46899998   5789999996 7999999975

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-34  Score=223.02  Aligned_cols=175  Identities=41%  Similarity=0.760  Sum_probs=149.3

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+|+.|.+|+++|+||||||++.|++||||+++||+|..|..+  .|..+.                             
T Consensus         8 l~~~~d~~Y~~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~C~~~--~~~~~~~y~~~~Sst~~~~~~~~~~~y~~gs~~G~   85 (323)
T d3cmsa_           8 LTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSN--ACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGI   85 (323)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSH--HHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEE
T ss_pred             eEeccCCEEEEEEEECCCCEEEEEEEECCCCceEEecCCCCCc--ccCCCCCCCccccCccccCCCcEEEEcCCceEEEE
Confidence            5689999999999999999999999999999999999999832  222222                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc--ccCCCCCCcE
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF--RNASDENGGE   70 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F--~~~~~~~~G~   70 (177)
                         |                            ...+                            ++.|  ........|.
T Consensus        86 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~  165 (323)
T d3cmsa_          86 LGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM  165 (323)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEE
T ss_pred             EEEEEEEEeccccccceEEEEEeecccccccccccccccccccccccCCCcchhhhHhhcCCCcccceeEEeccCCCCCc
Confidence               0                            0000                            3334  3344566799


Q ss_pred             EEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec--CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccCCCCC
Q psy3212          71 IMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP  148 (177)
Q Consensus        71 l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~--~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~~~g~  148 (177)
                      +.+|++|..++.+++.|+|..+..+|.+.+.++.+++....  ....+++||||++++||++++++|++++++.....+.
T Consensus       166 ~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~  245 (323)
T d3cmsa_         166 LTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGE  245 (323)
T ss_dssp             EEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTE
T ss_pred             eeccccCcccccCceEEeeccccceeEEEEeeEeeCCeeeecCCCeeEEEecCcceEEecHHHHHHHHHHhCceeccCCc
Confidence            99999999999999999999999999999999999988766  7789999999999999999999999999888667888


Q ss_pred             EEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         149 AKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       149 ~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      |..+|+..+.+|+|+|+|+|++++|||++
T Consensus       246 ~~~~~~~~~~~p~i~f~f~g~~~~l~~~~  274 (323)
T d3cmsa_         246 FDIDCDNLSYMPTVVFEINGKMYPLTPSA  274 (323)
T ss_dssp             EEECTTCTTTSCCEEEEETTEEEEECHHH
T ss_pred             eeEeccccCCCCeEEEEECCEEEEECHHH
Confidence            99999988899999999999999999863

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=100.00  E-value=1.1e-34  Score=228.23  Aligned_cols=172  Identities=26%  Similarity=0.488  Sum_probs=138.2

Q ss_pred             CceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC------------------C---------------
Q psy3212           6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK------------------D---------------   52 (177)
Q Consensus         6 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~------------------D---------------   52 (177)
                      .++|+++|+||||||++.|++||||+++||+|..|...+..+....                  |               
T Consensus        11 ~~~Y~~~i~iGtP~Q~~~~i~DTGSs~~wv~~~~c~~~sst~~~~~~~~~i~Y~~gs~~G~~~~D~~~~~~~~~~~~~fg   90 (340)
T d1wkra_          11 LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIG   90 (340)
T ss_dssp             SSCEEEEEEETTTTEEEEEEEETTCCCCEECSSSCCCCCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CeEEEEEEEEcCCCeEEEEEEECCCcceEEcCCCCCCCCCCcCCCCCeEEEEeCCeEEEEEEEEEEEeeCCeeeccEEEE
Confidence            4679999999999999999999999999999999963322111100                  1               


Q ss_pred             ---------cCCC------------------------------------cccc---c---cCCCCCCcEEEEcccCCCCe
Q psy3212          53 ---------KFVG------------------------------------HSHF---R---NASDENGGEIMFGGVDKDKF   81 (177)
Q Consensus        53 ---------~fdG------------------------------------~~~F---~---~~~~~~~G~l~fGg~d~~~~   81 (177)
                               .++|                                    ++.|   .   .......|.|+|||+|++++
T Consensus        91 ~~~~~~~~~~~~gi~g~g~~~~~~~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~~~  170 (340)
T d1wkra_          91 VASRDSGFDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKY  170 (340)
T ss_dssp             EEEEEESCTTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGC
T ss_pred             EEEeccCcccccceecccccccccccccCccccCcCchhhhHHhhhccchhheeeeecccCCCCCCCceEEccccChhhc
Confidence                     1122                                    2334   1   12234568999999999999


Q ss_pred             eeeeeEEecCc----ccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCCCEEEcCCCC
Q psy3212          82 VGDITYSPVSR----KGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANGPAKVDCDNL  156 (177)
Q Consensus        82 ~g~l~~~p~~~----~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g~~~~~C~~~  156 (177)
                      .|++.|+|+.+    ..+|.+.++.+.+++..+..+..|+|||||++++||++++++|++++++. ....+.|.++|+..
T Consensus       171 ~g~i~~~pv~~~~~~~~y~~i~~~~~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~c~~~  250 (340)
T d1wkra_         171 TGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQY  250 (340)
T ss_dssp             SSCCEEEECCSSTTGGGSSEEEEEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTSSEEECHHHH
T ss_pred             ccceEEEEeecCCCCcceeEEEEEEEECCceEeccCcceEEecCCccEeccHHHHHHHHHHhCccccCCceEEEEecccc
Confidence            99999999984    35899999866666666656778999999999999999999999999887 55678899999977


Q ss_pred             CCCccEEEEECCEEEEeccCC
Q psy3212         157 DKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       157 ~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      +++|+|+|+|+|++++|++++
T Consensus       251 ~~~P~i~f~f~g~~~~i~~~~  271 (340)
T d1wkra_         251 ANLQSLFFTIGGQTFELTANA  271 (340)
T ss_dssp             HTCCCEEEEETTEEEEECTGG
T ss_pred             CCCCceEEEECCEEEEEChHH
Confidence            789999999999999999874

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=4.2e-34  Score=223.22  Aligned_cols=176  Identities=47%  Similarity=0.941  Sum_probs=144.9

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |+||.|.+|+++|.||||||++.|++||||+++||+|..|..+ ..|..+.                             
T Consensus         9 l~~y~d~~Y~~~v~iGtP~q~~~l~~DTGS~~~Wv~~~~C~~~-~~~~~~~~y~p~~SsT~~~~~~~~~~~y~~gs~~G~   87 (337)
T d1qdma2           9 LKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFS-IACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGY   87 (337)
T ss_dssp             GCCGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSC-GGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEE
T ss_pred             eeeecCCEEEEEEEEcCCCEEEEEEEECCCcceEEecCCCCCC-ccccCCCCCCcccCCccccCCceEEEecCCceEEEE
Confidence            7899999999999999999999999999999999999988632 1222221                             


Q ss_pred             ---C----------------------------cCCC----------------------------cccc-----ccCCCCC
Q psy3212          52 ---D----------------------------KFVG----------------------------HSHF-----RNASDEN   67 (177)
Q Consensus        52 ---D----------------------------~fdG----------------------------~~~F-----~~~~~~~   67 (177)
                         |                            .++|                            +++|     .......
T Consensus        88 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  167 (337)
T d1qdma2          88 FSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGE  167 (337)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----
T ss_pred             EEeeeEEEEeeccccceeeeeccccceeecccccccccccccCccccCCCccchhhhhhhhccCCCeEEEEeecCCCccc
Confidence               1                            1122                            2333     2334566


Q ss_pred             CcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHHHHHHHHhCCccC
Q psy3212          68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL  144 (177)
Q Consensus        68 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~~~  144 (177)
                      .|.|+||++|++++.+++.++|+....+|.+.+.++.+++....   ....+++||||+++++|.+++++|+++++....
T Consensus       168 ~g~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~iiDtgt~~~~l~~~~~~~~~~~l~~~~~  247 (337)
T d1qdma2         168 GGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGS  247 (337)
T ss_dssp             CEEEEETCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCC
T ss_pred             CcceecCCcCccccccceeeeeeccccceeeccceEEECCeEeeecCCCceEEeeccCcceecchHHHHHHHHHhccccc
Confidence            89999999999999999999999999999999999999988664   677899999999999999999999999987755


Q ss_pred             CCCCEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         145 ANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       145 ~~g~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      ....+.++|...+..|.++|+|+|++++|+|++
T Consensus       248 ~~~~~~~~~~~~~~~p~itf~f~g~~~~l~~~~  280 (337)
T d1qdma2         248 PMGESAVDCGSLGSMPDIEFTIGGKKFALKPEE  280 (337)
T ss_dssp             SSSCCEECGGGGTTCCCEEEEETTEEEEECHHH
T ss_pred             cCCcccccccccCCCCceEEEECCEEEEEChHH
Confidence            566678899888889999999999999999864

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=100.00  E-value=2.7e-34  Score=224.16  Aligned_cols=172  Identities=26%  Similarity=0.504  Sum_probs=141.1

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.|..|+++|+||||||++.|++||||+++||+|..|.  +..|..+.                             
T Consensus         8 l~~~~~~~Y~~~v~iGtP~q~~~~~~DTGS~~~Wv~~~~C~--~~~~~~~~~y~~~~SsT~~~~~~~~~~~Y~~g~~~G~   85 (329)
T d2bjua1           8 LVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT--TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGF   85 (329)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC--STTGGGSCCBCGGGCTTCEEEEEEEEEECSSSEEEEE
T ss_pred             eEEecCCEEEEEEEECCCCEEEEEEEECCCcceEEECCCCC--CccccCCCCCCcccCCCccCCCccEEEEcCCCcEEEE
Confidence            57899999999999999999999999999999999999998  33443332                             


Q ss_pred             ---C-----------------------------cCCC----------------------------cccc---ccCCCCCC
Q psy3212          52 ---D-----------------------------KFVG----------------------------HSHF---RNASDENG   68 (177)
Q Consensus        52 ---D-----------------------------~fdG----------------------------~~~F---~~~~~~~~   68 (177)
                         |                             .++|                            ++.|   ........
T Consensus        86 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~~~~~~  165 (329)
T d2bjua1          86 FSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHT  165 (329)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBC
T ss_pred             EEEeeeeeeeeeeccceEEEEEeeccCccccccccCccccccccccccCCccccchhhhhhhccccceeeEEecCCcCCc
Confidence               0                             2222                            3444   33445668


Q ss_pred             cEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc-cCCCC
Q psy3212          69 GEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV-PLANG  147 (177)
Q Consensus        69 G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~-~~~~g  147 (177)
                      |.++|||+|+.++.|++.|+|+....+|.+.++.+.++.. . ....+++||||++++||.+++++|++++++. ....+
T Consensus       166 g~l~~gg~d~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~~iDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~  243 (329)
T d2bjua1         166 GFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIM-L-EKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLP  243 (329)
T ss_dssp             EEEEESSCCGGGEEEEEEEEEEEEETTEEEEEEEEETTEE-E-EEEEEEECTTCCSEEECHHHHHHHTTTSSCEECTTSS
T ss_pred             ceeeecCCCcccccCceEEEeeeeeeeEEEEEeeeEeeeE-c-cCCcccccccccceeCCHHHHHHHHHHhCCeecCCCC
Confidence            9999999999999999999999999999999987765422 1 4567999999999999999999999999887 44456


Q ss_pred             CEEEcCCCCCCCccEEEEECCEEEEeccCC
Q psy3212         148 PAKVDCDNLDKMPNVDIILGGKNFTLTRTN  177 (177)
Q Consensus       148 ~~~~~C~~~~~~p~l~f~~gg~~~~l~~~d  177 (177)
                      .|..+|+. +.+|.++|+|+|.+++|+|++
T Consensus       244 ~~~~~~~~-~~~p~~~f~~~g~~~~i~p~~  272 (329)
T d2bjua1         244 FYVTLCNN-SKLPTFEFTSENGKYTLEPEY  272 (329)
T ss_dssp             CEEEETTC-TTCCCEEEECSSCEEEECHHH
T ss_pred             eeEeeccc-CCCCceeEEeCCEEEEECHHH
Confidence            67777764 679999999999999999863

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=100.00  E-value=4.8e-33  Score=217.07  Aligned_cols=167  Identities=24%  Similarity=0.441  Sum_probs=139.1

Q ss_pred             ccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------
Q psy3212           4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------   51 (177)
Q Consensus         4 ~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------   51 (177)
                      .+|.+|+++|.||+  |++.|++||||+++||+|..|..  ..|..+.                                
T Consensus        12 ~~d~~Y~~~i~iG~--q~~~l~~DTGSs~~Wv~~~~C~~--~~~~~~~~~~~~sSt~~~~~~~~~i~Y~~G~~~~G~~~~   87 (323)
T d1izea_          12 SNDEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTPS--SERSGHDYYTPGSSAQKIDGATWSISYGDGSSASGDVYK   87 (323)
T ss_dssp             GGGCCEEEEEEETT--EEEEEEEETTCCCCEECBTTSCH--HHHTTSCCBCCCTTCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCccEEEEEEEECC--eeEEEEEECCCcceEEEcCCCCC--hhhcCCCccCccccccccCCCEEEEEcCCcceeeeEEEe
Confidence            34789999999995  88999999999999999999972  2333322                                


Q ss_pred             C----------------------------cCCC-----------------------------cccc-ccCCCCCCcEEEE
Q psy3212          52 D----------------------------KFVG-----------------------------HSHF-RNASDENGGEIMF   73 (177)
Q Consensus        52 D----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~f   73 (177)
                      |                            .+||                             +++| ........|.|+|
T Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~l~~~~~g~l~~  167 (323)
T d1izea_          88 DKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHNAPGVYDF  167 (323)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGGSSSSEEEEECCTTSCEEEEE
T ss_pred             eeeeccCccccceEEEEEEeccCccccccccccccccccccccccCcccchHHHHhhhhhcCcceEEEEccCCCCeeEEc
Confidence            1                            2333                             3344 2334456799999


Q ss_pred             cccCCCCeeeeeeEEecC-cccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc--cCCCCCEE
Q psy3212          74 GGVDKDKFVGDITYSPVS-RKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV--PLANGPAK  150 (177)
Q Consensus        74 Gg~d~~~~~g~l~~~p~~-~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~--~~~~g~~~  150 (177)
                      ||+|+++++|++.|+|+. ...+|.+.++++.++++.......+++||||+++++|+++++++++.+++.  ....+.+.
T Consensus       168 Gg~d~~~~~g~~~~~~~~~~~~~~~v~~~~i~v~~~~~~~~~~~ivDSGts~~~lp~~~~~~~~~~~~~~~~~~~~~~~~  247 (323)
T d1izea_         168 GYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYV  247 (323)
T ss_dssp             SSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETTEEECCCEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEE
T ss_pred             cccCcccccCcceeeeecCCCceEEEEeceEEECCCccccCceEEeccCCccccCCHHHHHHHHHHcCCccccCCCCcEE
Confidence            999999999999999998 467899999999999998877788999999999999999999999999655  55567788


Q ss_pred             EcCCCCCCCccEEEEECCEEEEeccC
Q psy3212         151 VDCDNLDKMPNVDIILGGKNFTLTRT  176 (177)
Q Consensus       151 ~~C~~~~~~p~l~f~~gg~~~~l~~~  176 (177)
                      ++|.  .++|.++|+|+|++++||++
T Consensus       248 ~~~~--~~~p~i~f~f~g~~~~ip~~  271 (323)
T d1izea_         248 FPSS--ASLPDFSVTIGDYTATVPGE  271 (323)
T ss_dssp             EETT--CCCCCEEEEETTEEEEECHH
T ss_pred             eecc--cCCceEEEEECCEEEEcChH
Confidence            8888  57899999999999999875

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=100.00  E-value=3e-33  Score=221.19  Aligned_cols=175  Identities=27%  Similarity=0.494  Sum_probs=139.9

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |.|+.+.+|+++|+||||||+++|+|||||+++||+|..|.. ...|..+.                             
T Consensus         8 ~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~-~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~g~~~G~   86 (357)
T d1mppa_           8 LYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDN-SEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGI   86 (357)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCG-GGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             eecCCCCEEEEEEEEcCCCeEEEEEEeCCCcceEEccCCCCC-CccccCCCCCCCccCCccccCCcceEEecCCCcEEEE
Confidence            578999999999999999999999999999999999999863 23455543                             


Q ss_pred             ---C---------------------------------cCCC----------------------------------cccc-
Q psy3212          52 ---D---------------------------------KFVG----------------------------------HSHF-   60 (177)
Q Consensus        52 ---D---------------------------------~fdG----------------------------------~~~F-   60 (177)
                         |                                 .++|                                  +++| 
T Consensus        87 ~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs  166 (357)
T d1mppa_          87 YFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFS  166 (357)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEE
T ss_pred             EEeeecccccceECcEEEEEEEeecccceecccccccccccccccccCCccccccccCCCCCCHHHHHHhccccccceEE
Confidence               0                                 1122                                  2334 


Q ss_pred             -ccCCCCCCcEEEEcccCCCCeeeeeeEEecCcc----cceEEEEeEEEEcCeEec---CCcEEEEeCCCCcEEeCHHHH
Q psy3212          61 -RNASDENGGEIMFGGVDKDKFVGDITYSPVSRK----GYWQFGVESIKIEKNVYC---SNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        61 -~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~w~v~~~~i~v~~~~~~---~~~~ai~DSGt~~~~lP~~~~  132 (177)
                       ........|.|+|||+|++++++++.|+|+.+.    .+|.|.++++.++++...   ....++|||||++++||++++
T Consensus       167 ~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~lp~~~~  246 (357)
T d1mppa_         167 VYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFA  246 (357)
T ss_dssp             EECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEEEEHHHH
T ss_pred             EEeccCCCCceEECcccChhHcCCceeEEEeccCCCCceeEEEEEeeEEECCeEeeecCCCcceEeeccCccccCCHHHH
Confidence             123345679999999999999999999999843    389999999999997553   556789999999999999999


Q ss_pred             HHHHHHhCCc-cCCCCCEEEcCCC-CCCCccEEEEECC-------EEEEeccC
Q psy3212         133 AELNKLIGAV-PLANGPAKVDCDN-LDKMPNVDIILGG-------KNFTLTRT  176 (177)
Q Consensus       133 ~~l~~~~~~~-~~~~g~~~~~C~~-~~~~p~l~f~~gg-------~~~~l~~~  176 (177)
                      ++|++++++. ....+.|.+||+. .+..|.++|.|++       .++.||++
T Consensus       247 ~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  299 (357)
T d1mppa_         247 EKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPIS  299 (357)
T ss_dssp             HHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGG
T ss_pred             HHHHHHhcCCccccCCceecccccccccCceEEEEEeccccccccEEEEEchH
Confidence            9999999766 4557789999974 2466788888853       47888876

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=100.00  E-value=7.2e-33  Score=215.94  Aligned_cols=165  Identities=25%  Similarity=0.487  Sum_probs=136.9

Q ss_pred             cCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--------------------------------C
Q psy3212           5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--------------------------------D   52 (177)
Q Consensus         5 ~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--------------------------------D   52 (177)
                      +|.+|+++|+||+  |+++|++||||+++||+|..|..  ..|..+.                                |
T Consensus        13 ~d~~Y~~~i~vG~--~~~~v~~DTGSs~~Wv~~~~C~~--c~~~~~~~y~~s~Sst~~~~~~~~~~Y~~G~~~~G~~~~D   88 (323)
T d1bxoa_          13 NDEEYITPVTIGG--TTLNLNFDTGSADLWVFSTELPA--SQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNVFTD   88 (323)
T ss_dssp             GGSCEEEEEEETT--EEEEEEEETTCCCEEECBTTSCH--HHHTTSCCBCHHHHCEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCcEEEEEEEECC--ccEEEEEECCCcceEEECCCCCc--hhhcCCCCCCCcccccccCCCEEEEEeCCCCcEEEEEEEE
Confidence            5789999999998  45789999999999999999972  2344333                                1


Q ss_pred             ----------------------------cCCC-----------------------------cccc-ccCCCCCCcEEEEc
Q psy3212          53 ----------------------------KFVG-----------------------------HSHF-RNASDENGGEIMFG   74 (177)
Q Consensus        53 ----------------------------~fdG-----------------------------~~~F-~~~~~~~~G~l~fG   74 (177)
                                                  +++|                             +++| ........|.|+||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~s~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~g~l~~G  168 (323)
T d1bxoa_          89 SVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFG  168 (323)
T ss_dssp             EEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGGBSSSEEEEECCSSSCEEEEES
T ss_pred             eeeccCcccccceeeeeeeeecccccccccccccccccCcccccCCCcCchHHHHHhhhcccceeeeccccCCCceeeee
Confidence                                        2233                             2333 33455678999999


Q ss_pred             ccCCCCeeeeeeEEecCc-ccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHHHHHHHHhCCc--cCCCCCEEE
Q psy3212          75 GVDKDKFVGDITYSPVSR-KGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAV--PLANGPAKV  151 (177)
Q Consensus        75 g~d~~~~~g~l~~~p~~~-~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~~~l~~~~~~~--~~~~g~~~~  151 (177)
                      |+|++++.|++.|+|+.. ..+|.+.++++.++++.. ....+++||||+++++|++++++|++++++.  ....+.|.+
T Consensus       169 g~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~-~~~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~  247 (323)
T d1bxoa_         169 FIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSG-DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVF  247 (323)
T ss_dssp             SCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETTEEE-EEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEE
T ss_pred             ccccccccCceeeeeccCcccceeEeeeeEEECCEec-CCcceEEecccccccCCHHHHHHHHHHhCCccccCCCCcEEE
Confidence            999999999999999985 568999999999998755 4567999999999999999999999999654  566788999


Q ss_pred             cCCCCCCCccEEEEECCEEEEeccC
Q psy3212         152 DCDNLDKMPNVDIILGGKNFTLTRT  176 (177)
Q Consensus       152 ~C~~~~~~p~l~f~~gg~~~~l~~~  176 (177)
                      +|+  +++|+|+|+|+|+++.||++
T Consensus       248 ~c~--~~~p~itf~f~g~~~~i~~~  270 (323)
T d1bxoa_         248 DCS--TNLPDFSVSISGYTATVPGS  270 (323)
T ss_dssp             CTT--CCCCCEEEEETTEEEEECHH
T ss_pred             ecc--CCCCcEEEEECCEEEEEChH
Confidence            999  58999999999999999986

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=212.80  Aligned_cols=172  Identities=24%  Similarity=0.405  Sum_probs=133.9

Q ss_pred             CccccCceEEEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC-----------------------------
Q psy3212           1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK-----------------------------   51 (177)
Q Consensus         1 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~-----------------------------   51 (177)
                      |++.....|+++|+||||||++.|+|||||+++||+|..|.    .|...-                             
T Consensus         8 l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~----~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G~~~   83 (387)
T d2qp8a1           8 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP----FLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELG   83 (387)
T ss_dssp             EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT----TCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEE
T ss_pred             ccCCCCCEEEEEEEECCCCEEEEEEEECCccceEEccCCCC----cCCCccCcccCCCcEeCCCcEEEEeCCccEEEEEE
Confidence            45566778999999999999999999999999999999986    333211                             


Q ss_pred             -C------------------------------cCCC-----------------------------cccc---cc------
Q psy3212          52 -D------------------------------KFVG-----------------------------HSHF---RN------   62 (177)
Q Consensus        52 -D------------------------------~fdG-----------------------------~~~F---~~------   62 (177)
                       |                              ++||                             +++|   +.      
T Consensus        84 ~D~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~~~~fs~~l~~~~~~~  163 (387)
T d2qp8a1          84 TDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPL  163 (387)
T ss_dssp             EEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCC
T ss_pred             EEEEEEcCCCceeEeEEEEEEEecCCcccccccccccccccccccccCCCCCCchHHHHhhccCcceeEeEeeccccccc
Confidence             1                              2233                             2334   10      


Q ss_pred             ----CCCCCCcEEEEcccCCCCeeeeeeEEecCcccceEEEEeEEEEcCeEec------CCcEEEEeCCCCcEEeCHHHH
Q psy3212          63 ----ASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC------SNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        63 ----~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~------~~~~ai~DSGt~~~~lP~~~~  132 (177)
                          ......|.|+|||+|++++.|++.|+|+.+..+|.+.+.+|.++++.+.      ....|+||||+++++||++++
T Consensus       164 ~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~~~~  243 (387)
T d2qp8a1         164 NQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVF  243 (387)
T ss_dssp             CHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHH
T ss_pred             cccccccCCCceeEecccccccccCceEeecccccceeEEEEEEEEECCEecccccccCCccceEEecCCCeEeCCHHHH
Confidence                1234679999999999999999999999999999999999999999774      456799999999999999999


Q ss_pred             HHHHHHhCCccCC-------CCCEEEcCCCCC-----CCccEEEEECC------EEEEeccC
Q psy3212         133 AELNKLIGAVPLA-------NGPAKVDCDNLD-----KMPNVDIILGG------KNFTLTRT  176 (177)
Q Consensus       133 ~~l~~~~~~~~~~-------~g~~~~~C~~~~-----~~p~l~f~~gg------~~~~l~~~  176 (177)
                      ++|++++++....       ...+.++|+..+     .+|.++|.|.+      .+++|+|+
T Consensus       244 ~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~  305 (387)
T d2qp8a1         244 EAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ  305 (387)
T ss_dssp             HHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHH
T ss_pred             HHHHHHhcccccccccCCccccceeeeeeecCCCccccccceEEEeccccccceEEEEECHH
Confidence            9999999654111       223456676543     47899999965      46888775

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.92  E-value=1.5e-25  Score=177.76  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=85.9

Q ss_pred             CCCCCCcEEEEcccCCCCeeeeeeEEecCc---ccceEEEEeEEEEcCeEec------CCcEEEEeCCCCcEEeCHHHHH
Q psy3212          63 ASDENGGEIMFGGVDKDKFVGDITYSPVSR---KGYWQFGVESIKIEKNVYC------SNCQAIADTGTSLIIGPSKVIA  133 (177)
Q Consensus        63 ~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~w~v~~~~i~v~~~~~~------~~~~ai~DSGt~~~~lP~~~~~  133 (177)
                      ......+.+.+|+++..++.|++.|+|+..   ..+|.+.++++.+++..+.      ....+++||||++++||+++++
T Consensus       170 ~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~~~lp~~~~~  249 (381)
T d1t6ex_         170 TGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYR  249 (381)
T ss_dssp             SSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHH
T ss_pred             CCcccceEeecccccccccCCceEEEeeeccCCCceeEEEEEEEeeCCeeeccCcccccCcceEEecCCceEECCHHHHH
Confidence            344455677778899999999999999974   3589999999999998763      4557999999999999999999


Q ss_pred             HHHHHhCCc--cCCCCC----------------EEEcCC----CCCCCccEEEEE-CCEEEEeccCC
Q psy3212         134 ELNKLIGAV--PLANGP----------------AKVDCD----NLDKMPNVDIIL-GGKNFTLTRTN  177 (177)
Q Consensus       134 ~l~~~~~~~--~~~~g~----------------~~~~C~----~~~~~p~l~f~~-gg~~~~l~~~d  177 (177)
                      +|+++++..  ......                |..++.    ....+|.|+|+| +|++++|+|++
T Consensus       250 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~  316 (381)
T d1t6ex_         250 PLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKN  316 (381)
T ss_dssp             HHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHH
T ss_pred             HHHHHHHHHhcccccccccccccccccCCcceeeccccccccccccccccEEEEEcCCcEEEEChhH
Confidence            999988544  111111                111111    112579999999 58999999863

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=93.59  E-value=0.14  Score=34.80  Aligned_cols=106  Identities=21%  Similarity=0.286  Sum_probs=57.7

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCCCCCCCCCCCCCC--CcCCC-------cccc-ccCCCCCCcEEEEcccCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK--DKFVG-------HSHF-RNASDENGGEIMFGGVDKD   79 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c~~~~~~c~~~~--D~fdG-------~~~F-~~~~~~~~G~l~fGg~d~~   79 (177)
                      .+.|.||  +|..++++|||..++-+...+-.    .-....  =...|       ..+- ........|+++.|-. +.
T Consensus        10 ~VtVkIg--GQ~~eaLLDTGADDTVLe~inLp----G~WkPkiIGGIGGfIkVrqY~~V~IeI~gkk~~gTVLVgPT-Pv   82 (203)
T d1hvca_          10 LVTIRIG--GQLKEALLDTGADDTVLEEMNLP----GKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT-PV   82 (203)
T ss_dssp             EEEEESS--SCEEEEEECTTCSSEEEECCCCS----SCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEESC-SS
T ss_pred             eEEEEEC--CEEEEEEecCCCCceEEecccCC----CCCcccEEEecCceEEEEEeCCEEEEECCcEEEEEEEECCC-Cc
Confidence            5788999  59999999999999999764433    000000  00000       0000 1112223344444431 11


Q ss_pred             Ceee---------eeeEEecC---cccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEe
Q psy3212          80 KFVG---------DITYSPVS---RKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIG  127 (177)
Q Consensus        80 ~~~g---------~l~~~p~~---~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~l  127 (177)
                      ..-|         .|.+ |=.   +-..|+-.+..++++++..    .|++|||+--+.+
T Consensus        83 NIIGRNlLtqlG~tLnF-pG~dGP~i~~wqrp~vt~ki~gq~~----ealldtgaddtv~  137 (203)
T d1hvca_          83 NIIGRNLLTQIGCTLNF-GGSSGPQITLWQRPLVTIKIGGQLK----EALLDTGADDTVL  137 (203)
T ss_dssp             CEECHHHHGGGTCEEEC-TTTTSSEECSSSCCEEEEEETTEEE----EEEECTTCSSCEE
T ss_pred             cccchhhhhhhhheeec-ccCCCCceeecccceEEEecchhHH----HHHhcccCCceEE
Confidence            1111         0111 100   1236888888899999866    4999999988877

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=92.70  E-value=0.12  Score=37.53  Aligned_cols=44  Identities=18%  Similarity=0.143  Sum_probs=35.4

Q ss_pred             eeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHH
Q psy3212          82 VGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        82 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~  132 (177)
                      .|-++.+|+.++.+|.++   |.||...+    .+++|||++.+++|....
T Consensus         3 ~~~~~~~~~~~d~~Y~~~---i~vG~~~~----~v~~DTGSs~~Wv~~~~C   46 (323)
T d1bxoa_           3 SGVATNTPTANDEEYITP---VTIGGTTL----NLNFDTGSADLWVFSTEL   46 (323)
T ss_dssp             CEEEEEEECGGGSCEEEE---EEETTEEE----EEEEETTCCCEEECBTTS
T ss_pred             CcccccccccCCcEEEEE---EEECCccE----EEEEECCCcceEEECCCC
Confidence            467888999988888776   77887654    589999999999997543

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=91.65  E-value=0.17  Score=36.78  Aligned_cols=44  Identities=18%  Similarity=0.185  Sum_probs=35.3

Q ss_pred             eeeeeEEecCcccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHHHH
Q psy3212          82 VGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI  132 (177)
Q Consensus        82 ~g~l~~~p~~~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~~~  132 (177)
                      .|.++..|+..+.+|.++   |.||.+.+    .+++|||++.+++|..-.
T Consensus         3 ~~~~~~~~~~~d~~Y~~~---i~iG~q~~----~l~~DTGSs~~Wv~~~~C   46 (323)
T d1izea_           3 TGSVTTNPTSNDEEYITQ---VTVGDDTL----GLDFDTGSADLWVFSSQT   46 (323)
T ss_dssp             CEEEEEEECGGGCCEEEE---EEETTEEE----EEEEETTCCCCEECBTTS
T ss_pred             cCcccccccCCccEEEEE---EEECCeeE----EEEEECCCcceEEEcCCC
Confidence            477888899888888665   88997654    599999999999996544

>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Feline immunodeficiency virus (FIV) protease
species: Feline immunodeficiency virus [TaxId: 11673]

Probab=89.95  E-value=0.17  Score=31.56  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=24.8

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHC   40 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~c   40 (177)
                      ...+.|+  +|.+++++|||..++-+...+-
T Consensus        12 ~v~v~I~--Gq~v~~LLDTGAD~TVi~~~d~   40 (113)
T d4fiva_          12 EILIFVN--GYPIKFLLDTGADITILNRRDF   40 (113)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEEGGGC
T ss_pred             eEEEEEC--CEEEEEEEcCCCCcEEEecccc
Confidence            4678888  5999999999999999986554

>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=89.49  E-value=0.29  Score=29.43  Aligned_cols=28  Identities=29%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQH   39 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~   39 (177)
                      .+.|.||  +|..++++|||..++-+..-+
T Consensus        10 ~vtvkIg--Gq~~eaLLDTGADdTVleei~   37 (99)
T d2nmza1          10 LVTIKIG--GQLKEALLDTGADDTVIEEMS   37 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEESCC
T ss_pred             eEEEEEC--CEEEEEeeccCCCceEEeccc
Confidence            5788999  599999999999999997544

>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: EIAV protease
species: Equine infectious anemia virus [TaxId: 11665]

Probab=88.95  E-value=0.25  Score=30.26  Aligned_cols=28  Identities=18%  Similarity=0.380  Sum_probs=23.8

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQH   39 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~   39 (177)
                      ...+.|+  +|+++.++|||..++-+...+
T Consensus        10 ~~~i~I~--Gq~v~~LLDTGAD~TVI~~~~   37 (104)
T d2fmba_          10 TTIVLIN--DTPLNVLLDTGADTSVLTTAH   37 (104)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEEEHHH
T ss_pred             EEEEEEC--CEEEEEEEeCCCCeEEEcccc
Confidence            4678888  699999999999999997543

>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 2 (HIV-2) protease
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=88.33  E-value=0.31  Score=29.30  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             EEEEEeCCCCceEEEEEecCCCceEEeCCC
Q psy3212          10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQH   39 (177)
Q Consensus        10 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~   39 (177)
                      .+.|.||  +|..++++|||..++-+..-+
T Consensus        10 ~vtvkIg--Gq~~eaLLDTGADdTVle~i~   37 (99)
T d3ecga1          10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE   37 (99)
T ss_dssp             EEEEEET--TEEEEEEECTTCSSCEECSCC
T ss_pred             eEEEEEC--CEEeeeecccCCCceeeeccC
Confidence            5788999  599999999999999996443

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.77  E-value=1.2  Score=31.60  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             eeeeEEecC--cccceEEEEeEEEEcCeEecCCcEEEEeCCCCcEEeCHH
Q psy3212          83 GDITYSPVS--RKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSK  130 (177)
Q Consensus        83 g~l~~~p~~--~~~~w~v~~~~i~v~~~~~~~~~~ai~DSGt~~~~lP~~  130 (177)
                      |+.+-+|+.  .+.+|.++   |.||.-.  ....+++|||++.+++|..
T Consensus         1 ~~~~svPl~~~~d~~Y~~~---i~vGtP~--q~~~~~~DTGSs~~Wv~~~   45 (323)
T d3cmsa_           1 GEVASVPLTNYLDSQYFGK---IYLGTPP--QEFTVLFDTGSSDFWVPSI   45 (323)
T ss_dssp             CCCEEEEEEEETTTEEEEE---EEETTTT--EEEEEEEETTCCCEEEEBT
T ss_pred             CCceEEeeEeccCCEEEEE---EEECCCC--EEEEEEEECCCCceEEecC
Confidence            456778885  35567665   7777411  2346999999999999854