Psyllid ID: psy3230

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL
cccccccccccEEEEEcccEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccccccccccccc
ccccccccccccEEEEccccEEccccEEEEEEEEEEcccEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccc
maprkgkvqkEEVLVSlgpqvkegedvFGVAHIFASFNDTFVHVTDLSGRETIARITGGmkvkadrdeasPYAAMLAAQDVAEKCKTLGITALHIKLRatggnrtktpgpgAQSALRALARSNmkigriedvtpipsdstrrkggrrgrrl
maprkgkvqkeevLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIklratggnrtktpgpgaQSALRALARsnmkigriedvtpipsdstrrkggrrgrrl
MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTrrkggrrgrrL
**************V*LGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKA*****SPYAAMLAAQDVAEKCKTLGITALHIKLRA****************************************************
**************************VFGVAHIFASFNDTFVHVTDLSGRETIARITGGM******DEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGN***TP*PGAQSALRALARSNMKIGRIEDVTPIPSDST***********
**********EEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIP***************
***********EVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDST***********
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MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query151 2.2.26 [Sep-21-2011]
P14130151 40S ribosomal protein S14 yes N/A 0.927 0.927 0.928 7e-72
Q6XI08151 40S ribosomal protein S14 N/A N/A 0.927 0.927 0.928 7e-72
Q1HR24151 40S ribosomal protein S14 N/A N/A 0.927 0.927 0.914 1e-70
Q5UAM9151 40S ribosomal protein S14 N/A N/A 0.927 0.927 0.914 1e-69
Q7QBX2152 40S ribosomal protein S14 yes N/A 0.927 0.921 0.907 2e-69
Q7QEH1152 40S ribosomal protein S14 yes N/A 0.927 0.921 0.907 3e-69
P62264151 40S ribosomal protein S14 yes N/A 0.927 0.927 0.885 4e-69
P62263151 40S ribosomal protein S14 yes N/A 0.927 0.927 0.885 4e-69
P62265151 40S ribosomal protein S14 yes N/A 0.927 0.927 0.885 4e-69
P13471151 40S ribosomal protein S14 yes N/A 0.927 0.927 0.885 5e-69
>sp|P14130|RS14_DROME 40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1 Back     alignment and function desciption
 Score =  268 bits (686), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/140 (92%), Positives = 136/140 (97%)

Query: 1   MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60
           MAPRK KVQKEEV V LGPQV++GE VFGVAHI+ASFNDTFVHVTDLSGRETIAR+TGGM
Sbjct: 1   MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
           KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGN+TKTPGPGAQSALRALA
Sbjct: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSNMKIGRIEDVTPIPSDST 140
           RS+MKIGRIEDVTPIPSDST
Sbjct: 121 RSSMKIGRIEDVTPIPSDST 140

Drosophila melanogaster (taxid: 7227)
>sp|Q6XI08|RS14A_DROYA 40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1 Back     alignment and function description
>sp|Q1HR24|RS14_AEDAE 40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1 Back     alignment and function description
>sp|Q5UAM9|RS14_BOMMO 40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1 Back     alignment and function description
>sp|Q7QBX2|RS14B_ANOGA 40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2 Back     alignment and function description
>sp|Q7QEH1|RS14A_ANOGA 40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2 Back     alignment and function description
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3 Back     alignment and function description
>sp|P62263|RS14_HUMAN 40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3 Back     alignment and function description
>sp|P62265|RS14_CRIGR 40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3 Back     alignment and function description
>sp|P13471|RS14_RAT 40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
110671466151 putative ribosomal protein S14e [Diaphor 1.0 1.0 1.0 2e-81
156554296151 PREDICTED: 40S ribosomal protein S14a [N 0.927 0.927 0.942 5e-72
264667381151 ribosomal protein S14 [Chrysomela tremul 0.927 0.927 0.95 7e-72
91091798151 PREDICTED: similar to S14e ribosomal pro 0.927 0.927 0.95 9e-72
50344488151 S14e ribosomal protein [Dascillus cervin 0.927 0.927 0.95 1e-71
188572393144 putative 40S ribosomal protein RPS14 [No 0.953 1.0 0.931 4e-71
195169445151 GL15135 [Drosophila persimilis] gi|19847 0.927 0.927 0.935 1e-70
195396959151 GJ16536 [Drosophila virilis] gi|19414686 0.927 0.927 0.935 2e-70
70909537152 ribosomal protein S14e [Sphaerius sp. AP 0.927 0.921 0.928 2e-70
195381475151 GJ20727 [Drosophila virilis] gi|19414427 0.927 0.927 0.921 3e-70
>gi|110671466|gb|ABG81984.1| putative ribosomal protein S14e [Diaphorina citri] Back     alignment and taxonomy information
 Score =  306 bits (783), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60
           MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM
Sbjct: 1   MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60

Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
           KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120

Query: 121 RSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
           RSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL
Sbjct: 121 RSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156554296|ref|XP_001602465.1| PREDICTED: 40S ribosomal protein S14a [Nasonia vitripennis] gi|152940797|gb|ABS44863.1| putative ribosomal protein S14 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|264667381|gb|ACY71276.1| ribosomal protein S14 [Chrysomela tremula] Back     alignment and taxonomy information
>gi|91091798|ref|XP_970498.1| PREDICTED: similar to S14e ribosomal protein [Tribolium castaneum] gi|270000834|gb|EEZ97281.1| hypothetical protein TcasGA2_TC011085 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|50344488|emb|CAH04330.1| S14e ribosomal protein [Dascillus cervinus] Back     alignment and taxonomy information
>gi|188572393|gb|ACD65103.1| putative 40S ribosomal protein RPS14 [Novocrania anomala] Back     alignment and taxonomy information
>gi|195169445|ref|XP_002025532.1| GL15135 [Drosophila persimilis] gi|198470570|ref|XP_002133506.1| GA22775 [Drosophila pseudoobscura pseudoobscura] gi|194109011|gb|EDW31054.1| GL15135 [Drosophila persimilis] gi|198145514|gb|EDY72134.1| GA22775 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195396959|ref|XP_002057096.1| GJ16536 [Drosophila virilis] gi|194146863|gb|EDW62582.1| GJ16536 [Drosophila virilis] Back     alignment and taxonomy information
>gi|70909537|emb|CAJ17191.1| ribosomal protein S14e [Sphaerius sp. APV-2005] Back     alignment and taxonomy information
>gi|195381475|ref|XP_002049474.1| GJ20727 [Drosophila virilis] gi|194144271|gb|EDW60667.1| GJ20727 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
FB|FBgn0004403151 RpS14a "Ribosomal protein S14a 0.927 0.927 0.928 6.7e-65
FB|FBgn0004404151 RpS14b "Ribosomal protein S14b 0.927 0.927 0.928 6.7e-65
UNIPROTKB|Q6XI08151 RpS14a "40S ribosomal protein 0.927 0.927 0.928 6.7e-65
UNIPROTKB|Q1HR24151 RpS14 "40S ribosomal protein S 0.927 0.927 0.914 9.7e-64
UNIPROTKB|Q5UAM9151 RpS14 "40S ribosomal protein S 0.927 0.927 0.914 3.3e-63
UNIPROTKB|Q7QBX2152 RpS14b "40S ribosomal protein 0.927 0.921 0.907 5.4e-63
ZFIN|ZDB-GENE-030131-8631151 rps14 "ribosomal protein S14" 0.927 0.927 0.892 5.4e-63
UNIPROTKB|Q7QEH1152 RpS14a "40S ribosomal protein 0.927 0.921 0.907 6.9e-63
UNIPROTKB|Q5ZHW8151 RPS14 "Uncharacterized protein 0.927 0.927 0.885 1.1e-62
UNIPROTKB|F2Z4N1162 RPS14 "Uncharacterized protein 0.927 0.864 0.885 1.1e-62
FB|FBgn0004403 RpS14a "Ribosomal protein S14a" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 130/140 (92%), Positives = 136/140 (97%)

Query:     1 MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60
             MAPRK KVQKEEV V LGPQV++GE VFGVAHI+ASFNDTFVHVTDLSGRETIAR+TGGM
Sbjct:     1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGM 60

Query:    61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
             KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGN+TKTPGPGAQSALRALA
Sbjct:    61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query:   121 RSNMKIGRIEDVTPIPSDST 140
             RS+MKIGRIEDVTPIPSDST
Sbjct:   121 RSSMKIGRIEDVTPIPSDST 140
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS
GO:0006412 "translation" evidence=ISS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0005811 "lipid particle" evidence=IDA
FB|FBgn0004404 RpS14b "Ribosomal protein S14b" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6XI08 RpS14a "40S ribosomal protein S14a" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|Q1HR24 RpS14 "40S ribosomal protein S14" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UAM9 RpS14 "40S ribosomal protein S14" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms
UNIPROTKB|Q7QBX2 RpS14b "40S ribosomal protein S14b" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8631 rps14 "ribosomal protein S14" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7QEH1 RpS14a "40S ribosomal protein S14a" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZHW8 RPS14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4N1 RPS14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7QBX2RS14B_ANOGANo assigned EC number0.90780.92710.9210yesN/A
Q6LXM9RS11_METMPNo assigned EC number0.58400.74830.9112yesN/A
O22584RS14_LUPLUNo assigned EC number0.82850.92050.9266N/AN/A
A4FWL3RS11_METM5No assigned EC number0.58400.74830.9112yesN/A
P14130RS14_DROMENo assigned EC number0.92850.92710.9271yesN/A
P48150RS14_CAEELNo assigned EC number0.83680.92710.9210yesN/A
P27069RS14_KLULANo assigned EC number0.82640.80130.8832yesN/A
C6A1B2RS11_THESMNo assigned EC number0.62930.76820.8345yesN/A
Q46GC9RS11_METBFNo assigned EC number0.58330.79470.9523yesN/A
A2SSV8RS11_METLZNo assigned EC number0.59500.80130.9236yesN/A
P19950RS141_MAIZENo assigned EC number0.82850.91390.9261N/AN/A
P19951RS142_MAIZENo assigned EC number0.82480.89400.9N/AN/A
A0B9L3RS11_METTPNo assigned EC number0.60620.84100.9844yesN/A
Q12ZR4RS11_METBUNo assigned EC number0.59500.80130.9603yesN/A
B6YSQ2RS11_THEONNo assigned EC number0.62060.76820.8345yesN/A
Q9SIH0RS141_ARATHNo assigned EC number0.82140.92050.9266yesN/A
P62264RS14_MOUSENo assigned EC number0.88570.92710.9271yesN/A
P62265RS14_CRIGRNo assigned EC number0.88570.92710.9271yesN/A
P62263RS14_HUMANNo assigned EC number0.88570.92710.9271yesN/A
Q8U0E3RS11_PYRFUNo assigned EC number0.63790.76820.8467yesN/A
P19115RS14_NEUCRNo assigned EC number0.79280.92050.9266N/AN/A
P48855RS14_PROCLNo assigned EC number0.850.92710.9271N/AN/A
P62011RS11_PYRHONo assigned EC number0.62930.76820.8467yesN/A
Q18G55RS11_HALWDNo assigned EC number0.60680.77480.8931yesN/A
Q6XI08RS14A_DROYANo assigned EC number0.92850.92710.9271N/AN/A
Q8PV17RS11_METMANo assigned EC number0.58330.79470.9523yesN/A
Q2FT98RS11_METHJNo assigned EC number0.57720.81450.9389yesN/A
A6UPW6RS11_METVSNo assigned EC number0.57750.76820.9354yesN/A
P42036RS143_ARATHNo assigned EC number0.81420.92050.9266yesN/A
Q7QEH1RS14A_ANOGANo assigned EC number0.90780.92710.9210yesN/A
A3CWH8RS11_METMJNo assigned EC number0.60.76150.8914yesN/A
Q54EG3RS14_DICDINo assigned EC number0.75160.97350.9671yesN/A
Q9XEK6RS14_TORRUNo assigned EC number0.86840.74830.8432N/AN/A
Q96W53RS14_CANAXNo assigned EC number0.86840.75490.8507N/AN/A
P19800RS14_TRYBBNo assigned EC number0.67660.88070.9236N/AN/A
O14150RS14_SCHPONo assigned EC number0.80.82780.8992yesN/A
A7IAH6RS11_METB6No assigned EC number0.59480.76820.8787yesN/A
P13471RS14_RATNo assigned EC number0.88570.92710.9271yesN/A
Q8TRR0RS11_METACNo assigned EC number0.59160.79470.9523yesN/A
P39516RS14B_YEASTNo assigned EC number0.80160.80130.8768yesN/A
Q5UAM9RS14_BOMMONo assigned EC number0.91420.92710.9271N/AN/A
Q5JJF3RS11_PYRKONo assigned EC number0.62930.76820.8285yesN/A
A6VGQ8RS11_METM7No assigned EC number0.58400.74830.9112yesN/A
A6UW04RS11_META3No assigned EC number0.60.79470.9677yesN/A
P46295RS14_CHLRENo assigned EC number0.84500.92710.9150N/AN/A
P06367RS14A_YEASTNo assigned EC number0.80160.80130.8832yesN/A
Q0W1V4RS11_UNCMANo assigned EC number0.58640.84760.9696yesN/A
Q1HR24RS14_AEDAENo assigned EC number0.91420.92710.9271N/AN/A
Q08699RS14_PODCANo assigned EC number0.87140.92710.9271N/AN/A
Q9CAX6RS142_ARATHNo assigned EC number0.82140.92050.9266yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
PTZ00129149 PTZ00129, PTZ00129, 40S ribosomal protein S14; Pro 6e-88
PRK09607132 PRK09607, rps11p, 30S ribosomal protein S11P; Revi 3e-69
TIGR03628114 TIGR03628, arch_S11P, archaeal ribosomal protein S 5e-56
COG0100129 COG0100, RpsK, Ribosomal protein S11 [Translation, 6e-46
pfam00411109 pfam00411, Ribosomal_S11, Ribosomal protein S11 2e-45
TIGR03632108 TIGR03632, bact_S11, 30S ribosomal protein S11 8e-23
PRK05309128 PRK05309, PRK05309, 30S ribosomal protein S11; Val 2e-22
CHL00041116 CHL00041, rps11, ribosomal protein S11 1e-16
>gnl|CDD|185465 PTZ00129, PTZ00129, 40S ribosomal protein S14; Provisional Back     alignment and domain information 
 Score =  252 bits (646), Expect = 6e-88
 Identities = 115/149 (77%), Positives = 132/149 (88%)

Query: 1   MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60
              +  K+ K++ + +LGP V +GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   SKKKATKMSKKQEVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGM 60

Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
           KVKADRDE+SPYAAM+AAQDVA +CK LGI ALHIKLRATGG RTKTPGPGAQ+ALRALA
Sbjct: 61  KVKADRDESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALA 120

Query: 121 RSNMKIGRIEDVTPIPSDSTRRKGGRRGR 149
           R+ +KIGRIEDVTPIP+DSTRRKGGRRGR
Sbjct: 121 RAGLKIGRIEDVTPIPTDSTRRKGGRRGR 149

Length = 149
>gnl|CDD|236588 PRK09607, rps11p, 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>gnl|CDD|132667 TIGR03628, arch_S11P, archaeal ribosomal protein S11P Back     alignment and domain information
>gnl|CDD|223178 COG0100, RpsK, Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|189537 pfam00411, Ribosomal_S11, Ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|188357 TIGR03632, bact_S11, 30S ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated Back     alignment and domain information
>gnl|CDD|176982 CHL00041, rps11, ribosomal protein S11 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 151
PTZ00129149 40S ribosomal protein S14; Provisional 100.0
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 100.0
COG0100129 RpsK Ribosomal protein S11 [Translation, ribosomal 100.0
PRK05309128 30S ribosomal protein S11; Validated 100.0
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 100.0
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 100.0
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 100.0
CHL00041116 rps11 ribosomal protein S11 100.0
PTZ00090233 40S ribosomal protein S11; Provisional 100.0
KOG0407|consensus139 100.0
KOG0408|consensus190 100.0
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 97.64
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 97.39
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 97.37
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 97.2
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 97.06
CHL00139109 rpl18 ribosomal protein L18; Validated 96.94
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 96.42
PTZ00032211 60S ribosomal protein L18; Provisional 93.78
PTZ00069 300 60S ribosomal protein L5; Provisional 91.25
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-55  Score=337.45  Aligned_cols=146  Identities=79%  Similarity=1.211  Sum_probs=140.1

Q ss_pred             CCCcccceeeEEecCceeeccceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHHHHHH
Q psy3230           4 RKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAE   83 (151)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~~~~~   83 (151)
                      .+++.+|++.+..++|++.++++..||+||++|+|||||||||++|++++|+|||+++||++++|+||||||.||+++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~Gi~hI~as~NNTiItiTD~~G~~~~w~SsG~~gfKg~r~KsTpyAAq~aa~~~a~   83 (149)
T PTZ00129          4 KATKMSKKQEVATLGPNVAKGELVFGVAHIFASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAQDVAA   83 (149)
T ss_pred             ccccCCcceeeeecCCcccCCceeEEEEEEEcccCCeEEEEEcccCCEEEEEecCcceecccccCCCHHHHHHHHHHHHH
Confidence            45778899999999999888999999999999999999999999999988888888999998779999999999999999


Q ss_pred             HHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q psy3230          84 KCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGR  149 (151)
Q Consensus        84 k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~~  149 (151)
                      +|.++||+.|+|+|||+||++.+|+|+||+++|++|+++||+|.+|+|+||||||||||||+||.|
T Consensus        84 k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhNGcRppk~RR~r  149 (149)
T PTZ00129         84 RCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDSTRRKGGRRGR  149 (149)
T ss_pred             HHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999987

>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>KOG0407|consensus Back     alignment and domain information
>KOG0408|consensus Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
2zkq_k151 Structure Of A Mammalian Ribosomal 40s Subunit With 2e-70
3iz6_K150 Localization Of The Small Subunit Ribosomal Protein 4e-64
3izb_K137 Localization Of The Small Subunit Ribosomal Protein 2e-55
1s1h_K136 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 5e-55
3jyv_K125 Structure Of The 40s Rrna And Proteins And PE TRNA 2e-54
2xzm_K151 Crystal Structure Of The Eukaryotic 40s Ribosomal S 4e-53
3j0l_K140 Core Of Mammalian 80s Pre-Ribosome In Complex With 5e-51
3zey_H144 High-resolution Cryo-electron Microscopy Structure 3e-45
3j20_M137 Promiscuous Behavior Of Proteins In Archaeal Riboso 4e-36
2gy9_K116 Structure Of The 30s Subunit Of A Pre-Translocation 5e-15
3fih_K117 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 6e-15
1vs5_K129 Crystal Structure Of The Bacterial Ribosome From Es 6e-15
1p6g_K128 Real Space Refined Coordinates Of The 30s Subunit F 6e-15
3bbn_K140 Homology Model For The Spinach Chloroplast 30s Subu 1e-08
1pns_K119 Crystal Structure Of A Streptomycin Dependent Ribos 1e-06
1i94_K128 Crystal Structures Of The Small Ribosomal Subunit W 1e-06
1fjg_K129 Structure Of The Thermus Thermophilus 30s Ribosomal 1e-06
>pdb|2ZKQ|KK Chain k, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 151 Back     alignment and structure 
Iteration: 1

 Score =  260 bits (664), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 133/140 (95%)
Query: 1   MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60
           MAPRKGK +KEE ++SLGPQV EGE+VFGV HIFASFNDTFVHVTDLSG+ETI R+TGGM
Sbjct: 1   MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
           KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 121 RSNMKIGRIEDVTPIPSDST 140
           RS MKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>pdb|3IZ6|K Chain K, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 150 Back     alignment and structure
>pdb|3IZB|K Chain K, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 137 Back     alignment and structure
>pdb|1S1H|K Chain K, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 136 Back     alignment and structure
>pdb|3JYV|K Chain K, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125 Back     alignment and structure
>pdb|2XZM|K Chain K, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 151 Back     alignment and structure
>pdb|3J0L|K Chain K, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 140 Back     alignment and structure
>pdb|3ZEY|H Chain H, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 144 Back     alignment and structure
>pdb|3J20|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 137 Back     alignment and structure
>pdb|2GY9|K Chain K, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 116 Back     alignment and structure
>pdb|3FIH|K Chain K, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 117 Back     alignment and structure
>pdb|1VS5|K Chain K, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 129 Back     alignment and structure
>pdb|1P6G|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 128 Back     alignment and structure
>pdb|3BBN|K Chain K, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 140 Back     alignment and structure
>pdb|1PNS|K Chain K, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 119 Back     alignment and structure
>pdb|1I94|K Chain K, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 128 Back     alignment and structure
>pdb|1FJG|K Chain K, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 129 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 3e-68
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 6e-68
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 2e-47
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 8e-43
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 4e-42
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Length = 151 Back     alignment and structure
 Score =  202 bits (515), Expect = 3e-68
 Identities = 109/151 (72%), Positives = 124/151 (82%)

Query: 1   MAPRKGKVQKEEVLVSLGPQVKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGM 60
           MAP+K    ++EV+    P V   E+VFGV HI A++NDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MAPKKTAPVQKEVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGM 60

Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
           KVKADR+E+SPYAAM AA DV  +CK L I ALHIKLRA GG  TK PGPGAQSALRALA
Sbjct: 61  KVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALA 120

Query: 121 RSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
           RS MKIGRIEDVTPIP+DSTRR+GGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPIPTDSTRREGGRRGRRL 151
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Length = 137 Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 140 Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 100.0
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 100.0
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 100.0
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 100.0
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 100.0
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 100.0
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 96.94
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 96.76
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 96.69
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 96.08
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 95.89
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 95.31
2zkr_n 297 60S ribosomal protein L5; protein-RNA complex, 60S 94.84
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 94.35
3u5e_D 297 60S ribosomal protein L5; translation, ribosome, r 92.02
4a17_M 301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 91.54
3iz5_Q 304 60S ribosomal protein L5 (L18P); eukaryotic riboso 86.76
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
Probab=100.00  E-value=5e-61  Score=371.46  Aligned_cols=150  Identities=73%  Similarity=1.118  Sum_probs=136.4

Q ss_pred             CCCCCCcccceeeEEecCce-eeccceeeeEEEEEccCCCeEEEEEcCCCCEEEEEecccceeeccCCCCCHHHHHHHHH
Q psy3230           1 MAPRKGKVQKEEVLVSLGPQ-VKEGEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQ   79 (151)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg~g~k~~~rK~t~~Aa~~aa~   79 (151)
                      |||+++++ +++++++|+|| +.++++.+|++||++|+|||||||||++|++++||+|||++||++++|+||||||+||+
T Consensus         1 ~~~~~~~~-~~~~~~~~~p~~~~~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~   79 (151)
T 2xzm_K            1 MAPKKTAP-VQKEVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAI   79 (151)
T ss_dssp             ------------CCCCCSCSCCCTTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHH
T ss_pred             CCCccccc-cccceeecCCccccCCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHH
Confidence            89999988 77788999999 99999999999999999999999999999988999999999999988999999999999


Q ss_pred             HHHHHHHHcCceEEEEEEEecCCCcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q psy3230          80 DVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL  151 (151)
Q Consensus        80 ~~~~k~~~~gi~~v~V~vr~~~g~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~~~~  151 (151)
                      +++++|+++||+.|+|+|+|+||++.||+|+||++||++|+.+|++|.+|+|+||||||||||||+||+||+
T Consensus        80 ~~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K~RRvr~~  151 (151)
T 2xzm_K           80 DVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL  151 (151)
T ss_dssp             HHHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSSCTTCSCC
T ss_pred             HHHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 151
d2qalk1117 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escheri 5e-37
d2uubk1119 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus 1e-33
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

 Score =  121 bits (304), Expect = 5e-37
 Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 29  GVAHIFASFNDTFVHVTDLSGRETIARITGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
           GVAHI ASFN+T V +TD  G        GG        +++P+AA +AA+  A+  K  
Sbjct: 7   GVAHIHASFNNTIVTITDRQGNALGWATAGGS-GFRGSRKSTPFAAQVAAERCADAVKEY 65

Query: 89  GITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRR 147
           GI  L + +        K PGPG +S +RAL  +  +I  I DVTPIP +  R    RR
Sbjct: 66  GIKNLEVMV--------KGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRR 116
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 100.0
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 100.0
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 97.32
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 96.33
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 96.3
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 96.22
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 94.0
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-48  Score=288.37  Aligned_cols=115  Identities=35%  Similarity=0.537  Sum_probs=106.7

Q ss_pred             cceeeeEEEEEccCCCeEEEEEcCCCCEEEEEeccc-ceeeccCCCCCHHHHHHHHHHHHHHHHHcCceEEEEEEEecCC
Q psy3230          24 GEDVFGVAHIFASFNDTFVHVTDLSGRETIARITGG-MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGG  102 (151)
Q Consensus        24 ~~~~~gi~hI~~t~NNTiitlTD~~G~~~~~~sSgg-~g~k~~~rK~t~~Aa~~aa~~~~~k~~~~gi~~v~V~vr~~~g  102 (151)
                      .++..|++||++|+|||||||||++||++ +|+|+| +||++. +|+||||||++++.++++++++||+.|+|++     
T Consensus         2 ~~~~~GivhI~~t~NNT~itlTD~~Gn~i-~~~S~G~~gfkg~-rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~-----   74 (119)
T d2uubk1           2 RQVASGRAYIHASYNNTIVTITDPDGNPI-TWSSGGVIGYKGS-RKGTPYAAQLAALDAAKKAMAYGMQSVDVIV-----   74 (119)
T ss_dssp             CCCSEEEEEEEECSSCEEEEEECTTSCEE-EEEETTTSSCCSG-GGGSHHHHHHHHHHHHHHHHTTTCCEEEEEE-----
T ss_pred             ccccccEEEEEeccCCEEEEEECCCCCEE-EEEecccceeccc-cccchhHHHHHHHHHHHHHHHcCCcEEEEEE-----
Confidence            34788999999999999999999999985 555555 688875 5999999999999999999999999999999     


Q ss_pred             CcccCCCCChHHHHHHHHhCCCeEEEEEecCCCCCCCCCCCCCCCC
Q psy3230         103 NRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRG  148 (151)
Q Consensus       103 ~~~kG~G~Gr~~~ik~L~~~gl~I~~I~D~TpiphNGCRpkK~RR~  148 (151)
                         +|+|+||+++|++|+.+|++|++|+|+||+|||||||||+||+
T Consensus        75 ---kG~G~gR~~~ik~l~~~g~kI~~I~D~T~iphnGcRp~K~RRk  117 (119)
T d2uubk1          75 ---RGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK  117 (119)
T ss_dssp             ---ECCCTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGCC
T ss_pred             ---EcCCCChHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Confidence               7999999999999999999999999999999999999999986
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure