Psyllid ID: psy3231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKTS
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEcccccHHHHEEEEcccccccccccccccEcccccHHHHEHHccccccccccHccHHHHccccccccHHHHHHHcccccccccccccccEccccHHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccccEccccHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccEEcccccHHEEEEEEcccccccccccccccEccccHHHHHHHHcccccccccccccEccccHHHHHHHHHccccccccccccccEEccccHHHHHHHHccccccccccccEEEcccccEEcccccccccccccccEccccHHHHHHHHcccccccccccccccccccccccEccccHHHHHHHHccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mtlktytcdFCSAAFALKHSIADHiqtehmgnpkhqdtkqypafrngsfyiradieqpkvkvEHETIMSYARRQVEyeqeqqipaqgksIQERkfkcemcpksfdhksnIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLkmhkgpkiftcaqcdkafslksnLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKShqnrrfkcpcceriftsetrmrnhidmkhadenLFKCKKCLKVFSDEIKFhlhgrahakfyrcsecekrFATEDIMRQHFRnyhnkedayVCNYCYDSFETKSTLVDHffhhgnpymcnhcflmfpdeknlrnhectscftcpfcqrkYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKTS
Flexible Loop (DISEMBL)
MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIradieqpkvkVEHETIMSYARRQVEyeqeqqipaqgksiqerKFKCEMCPKSFDHKSNIRRHMaathdlqkkyKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHvkshqnrrfkcpcceRIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLhgrahakfyrcSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIEsciqlnptttvLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKTS
Low Complexity Region (SEG)
MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKTS
Disordered region (IsUnstruct)
***KTYTCDFCSAAFALKHSIADHIQ**************YPAFRNGSFYIRADIEQPKVKVEHETIMSYA**************************************IRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLG****
Disordered Region (DISOPRED)
MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLG****
Disordered Region (DISEMBL)
MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEE*********FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKTS
Disordered Region (DISPRO)
***KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVC******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLKTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
P10076	861	Zinc finger protein 26 OS	no	N/A	0.907	0.442	0.282	8e-34
Q09FC8	603	Zinc finger protein 415 O	yes	N/A	0.726	0.505	0.325	1e-33
Q05481	1191	Zinc finger protein 91 OS	no	N/A	0.911	0.321	0.293	3e-33
B7Z6K7	855	Putative uncharacterized	no	N/A	0.711	0.349	0.310	7e-33
Q96MU6	729	Zinc finger protein 778 O	no	N/A	0.709	0.408	0.308	3e-32
Q9HCG1	818	Zinc finger protein 160 O	no	N/A	0.926	0.475	0.275	3e-32
Q6ZNA1	936	Zinc finger protein 836 O	no	N/A	0.923	0.414	0.294	3e-32
P0CJ79	500	Zinc finger protein 888 O	no	N/A	0.719	0.604	0.321	5e-32
Q3ZCX4	644	Zinc finger protein 568 O	no	N/A	0.719	0.468	0.334	9e-32
Q5R8X1	613	Zinc finger protein 665 O	no	N/A	0.711	0.487	0.303	1e-31

>sp|P10076|ZFP26_MOUSE Zinc finger protein 26 OS=Mus musculus GN=Zfp26 PE=2 SV=2

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 182/443 (41%), Gaps = 62/443 (13%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSF---YIRADI-EQP- 58
           K Y CD C  AFA    +  H++T H G    +      AF   S+   +IR    E+P 
Sbjct: 328 KPYQCDQCGNAFASSSYLTTHLRT-HTGEKPFECNICGKAFTRSSYLLGHIRTHTGEKPY 386

Query: 59  KVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATH 118
           + KV  +     +   +            K   ER + C  C K+F   + +  H+  TH
Sbjct: 387 ECKVCGKAFSGRSWLTIHLR---------KHTGERPYPCTECEKAFTSFAQLTEHIK-TH 436

Query: 119 DLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 177
             +K ++CK+CAR +R    LK H ++H G K + C  C KAF+ +S L+KHV  H+ E 
Sbjct: 437 TGEKPFRCKVCARTFRNSSCLKTHFRIHTGIKPYKCNYCGKAFTARSGLTKHVLIHNGEK 496

Query: 178 VKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFK 236
             +CK C + F     L EH++ H   + F+C  C +     + +  H+   H  E  F+
Sbjct: 497 PYECKECGKAFSTSSGLVEHIRIHTGEKPFECYQCGKALAHSSSLVGHLRT-HTGEKPFE 555

Query: 237 CKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNY----------- 283
           C +C K F+      +H R H   K Y C EC K F     + +H R +           
Sbjct: 556 CNQCDKTFTRSSYLRIHMRTHTGEKPYECKECGKTFPERSCLTKHIRTHTGERPYECKEC 615

Query: 284 ----------------HNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMF 325
                           H+ E  + C  C  SF   S+L  HF  H G  PY C++C   F
Sbjct: 616 GKGFISFAQLTVHIKTHSSERPFQCKVCTKSFRNSSSLETHFRIHTGVKPYKCSYCGKAF 675

Query: 326 PDEKN----LRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
                    LRNH     + C  C + +     L  HI S     P         +C +C
Sbjct: 676 TARSGLTIHLRNHTGEKSYACQECGKAFSTSSGLIAHIRSHKGEKPF--------ECDHC 727

Query: 382 QRMFRNEDKLTAHELSHTMEKTF 404
            + F +   L  H   HT EK F
Sbjct: 728 GKAFASSSYLNVHLKIHTGEKPF 750

May be involved in transcriptional regulation.
Mus musculus (taxid: 10090)

>sp|Q09FC8|ZN415_HUMAN Zinc finger protein 415 OS=Homo sapiens GN=ZNF415 PE=2 SV=2

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 150/326 (46%), Gaps = 21/326 (6%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ +KC++C K F  KSN+ RH    H  +K YKC  C R +     L  H ++H G K 
Sbjct: 289 EKGYKCDLCGKVFSQKSNLARHWRV-HTGEKPYKCNECDRSFSRNSCLALHRRVHTGEKP 347

Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 209
           + C +CDK FS  S L+ H + H+ E    CK C + F     L  H   H  ++ +KC 
Sbjct: 348 YKCYECDKVFSRNSCLALHQKTHIGEKPYTCKECGKAFSVRSTLTNHQVIHSGKKPYKCN 407

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C ++F+  + +  H  + H  E  +KC +C KVFS       H R H   K Y+C+EC 
Sbjct: 408 ECGKVFSQTSSLATHQRI-HTGEKPYKCNECGKVFSQTSSLARHWRIHTGEKPYKCNECG 466

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHGN-PYMCNHCFLMF 325
           K F+    +  H R  H  E  Y CN C  +F   S L  H   H G  PY CN C   F
Sbjct: 467 KVFSYNSHLASH-RRVHTGEKPYKCNECGKAFSVHSNLTTHQVIHTGEKPYKCNQCGKGF 525

Query: 326 PDEKNLRNHECTSCFTCPF----CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
               +L  H+       P+    C + + +  +L +H     Q+  T    K   KC  C
Sbjct: 526 SVHSSLTTHQVIHTGEKPYKCNECGKSFSVRPNLTRH-----QIIHTG---KKPYKCSDC 577

Query: 382 QRMFRNEDKLTAHELSHTMEKTFYRN 407
            + F     L  H++ HT EK + RN
Sbjct: 578 GKSFSVRPNLFRHQIIHTKEKPYKRN 603

Involved in transcriptional regulation. Transcriptional activity differed among the various isoforms. All isoforms except isoform 3 seem to suppresses the transcriptional activities of AP-1 and p53/TP53.

Homo sapiens (taxid: 9606)

>sp|Q05481|ZNF91_HUMAN Zinc finger protein 91 OS=Homo sapiens GN=ZNF91 PE=2 SV=2

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 179/409 (43%), Gaps = 26/409 (6%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
           K Y C+ C  AF    ++  H +  H G   ++  +   AFR      +  I   + K  
Sbjct: 488 KPYKCEECGKAFRQSSTLTKH-KIIHTGEKPYKFEECGKAFRQSLTLNKHKIIHSREKPY 546

Query: 64  HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
                  A +Q       +I   GK +    +KCE C K+F+H S++  H    H  +K 
Sbjct: 547 KCKECGKAFKQFSTLTTHKIIHAGKKL----YKCEECGKAFNHSSSLSTH-KIIHTGEKS 601

Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCK 182
           YKC+ C + + +   L+ H ++H G K + C +C KAFS  S L+KH R H  E   +CK
Sbjct: 602 YKCEECGKAFLWSSTLRRHKRIHTGEKPYKCEECGKAFSHSSALAKHKRIHTGEKPYKCK 661

Query: 183 ICLEIFEDDEVLEEHVKSH-QNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCL 241
            C + F +   L  H  +H + + +KC  C++ F   + +  H  + HA E L+KC++C 
Sbjct: 662 ECGKAFSNSSTLANHKITHTEEKPYKCKECDKTFKRLSTLTKH-KIIHAGEKLYKCEECG 720

Query: 242 KVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
           K F+      +H   H   K Y+C EC K F     + +H R  H +E  + C  C  +F
Sbjct: 721 KAFNRSSNLTIHKFIHTGEKPYKCEECGKAFNWSSSLTKHKR-IHTREKPFKCKECGKAF 779

Query: 300 ETKSTLVDH-FFHHGN-PYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKIEK 353
              STL  H   H G  PY C  C   F     L  H+        + C  C + +K   
Sbjct: 780 IWSSTLTRHKRIHTGEKPYKCEECGKAFSRSSTLTKHKTIHTGEKPYKCKECGKAFKHSS 839

Query: 354 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 402
            L KH              + L KC  C + F     LT H++ HT EK
Sbjct: 840 ALAKH--------KIIHAGEKLYKCEECGKAFNQSSNLTTHKIIHTKEK 880

Homo sapiens (taxid: 9606)

>sp|B7Z6K7|ZN814_HUMAN Putative uncharacterized zinc finger protein 814 OS=Homo sapiens GN=ZNF814 PE=2 SV=2

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 159/348 (45%), Gaps = 49/348 (14%)

Query: 95  FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
           ++C  C KSF  KS++ +H    H  +K Y C+ C + +  + +L++H ++H G + F C
Sbjct: 408 YECGECGKSFSQKSSLIQHQR-FHTGEKPYGCEECGKSFSSEGHLRSHQRVHAGERPFKC 466

Query: 155 AQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCE 212
            +C K+FS K +L  H R H  E   QC  C + F     L  H + H   R ++C  C 
Sbjct: 467 GECVKSFSHKRSLVHHQRVHSGERPYQCGECGKSFSQKGNLVLHQRVHTGARPYECGECG 526

Query: 213 RIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAK--FYRCSECEKRF 270
           + F+S+  +RNH  + H  + L++C +C K FS +    LH R H +   Y C EC K F
Sbjct: 527 KSFSSKGHLRNHQQI-HTGDRLYECGECGKSFSHKGTLILHQRVHPRERSYGCGECGKSF 585

Query: 271 ATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMFPDE 328
           ++   +R H R  H  E  Y C  C  SF  K +LV H   H    PY C  C   F ++
Sbjct: 586 SSIGHLRSHQR-VHTGERPYECGECGKSFSHKRSLVHHQRMHTGERPYKCGDCGKSFNEK 644

Query: 329 KNLRNH-------------ECTSCFT-------------------CPFCQRKYKIEKHLE 356
            +LRNH             EC  CF+                   C  C + +K + HL 
Sbjct: 645 GHLRNHQRVHTTERPFKCGECGKCFSHKGNLILHQHGHTGERPYVCRECGKLFKKKSHLL 704

Query: 357 KHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
            H        P          C  CQ+ FRN+ +L AH+  HT E+ +
Sbjct: 705 VHQRIHNGEKPYA--------CEACQKFFRNKYQLIAHQRVHTGERPY 744

Homo sapiens (taxid: 9606)

>sp|Q96MU6|ZN778_HUMAN Zinc finger protein 778 OS=Homo sapiens GN=ZNF778 PE=2 SV=3

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 154/327 (47%), Gaps = 29/327 (8%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ + C+ C K+F   S +  H+  TH  +K Y+CK C + +    +L  H ++H G K 
Sbjct: 418 EKPYTCKDCGKAFCTSSGLTEHVR-THTGEKPYECKDCGKSFTVSSSLTEHARIHTGEKP 476

Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH-QNRRFKCP 209
           + C QC KAF+ +S L+KH+R H  E   +CK C + +    +L EHVK+H + + F C 
Sbjct: 477 YECKQCGKAFTGRSGLTKHMRTHTGEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICT 536

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C + F + + +  HI + H     ++CK C K F+       H R H   K Y C  C 
Sbjct: 537 VCRKSFRNSSCLNKHIQI-HTGIKPYECKDCGKTFTVSSSLTEHIRTHTGEKPYECKVCG 595

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMF 325
           K F T   +  H R  H  E  Y+C  C  +F + S L++H   H    PY+CN C   F
Sbjct: 596 KAFTTSSHLIVHIRT-HTGEKPYICKECGKAFASSSHLIEHRRTHTGEKPYICNECGKAF 654

Query: 326 PDEKNL----RNHECTSCFTCPFCQRKYK----IEKHLEKHIESCIQLNPTTTVLKTLQK 377
               +L    R H     + C  C + Y     +++HL+ + E  + +            
Sbjct: 655 RASSHLHKHGRIHTGQKPYKCKECGKAYNRFYLLKEHLKTYTEEQVFV------------ 702

Query: 378 CRYCQRMFRNEDKLTAHELSHTMEKTF 404
           C+ C + F+N   L  H   HT EK F
Sbjct: 703 CKDCGKSFKNSSCLNHHTQIHTDEKPF 729

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9HCG1|ZN160_HUMAN Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 184/435 (42%), Gaps = 46/435 (10%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRA----DIEQP- 58
           K Y C+ C  AF+++ S+A H QT H G   ++  +    FR  S+  R       E+P 
Sbjct: 395 KPYKCNECGKAFSVRSSLAIH-QTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPY 453

Query: 59  ------------KVKVEHETIMSYAR-------RQVEYEQEQQIPAQGKSIQERKFKCEM 99
                            H+ I +  +        +V  +  Q    +     E+ +KC  
Sbjct: 454 KCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNE 513

Query: 100 CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDK 159
           C K+F  +S++  H A  H  +K YKC  C + +  K +L++H  +H G K + C +C K
Sbjct: 514 CGKAFSVRSSLTTHQA-IHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGK 572

Query: 160 AFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTS 217
            F+  S L++H R H  E   +C  C   F D   L  H   H   + +KC  C ++F  
Sbjct: 573 VFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRH 632

Query: 218 ETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDI 275
            + +  H  + H  E  +KC +C K FS       H   H   K Y+C++C K F     
Sbjct: 633 NSYLATHRRI-HTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSH 691

Query: 276 MRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHGN-PYMCNHCFLMFPDEKNLRN 333
           +  H R  H  E  Y CN C  +F  +S+L  H   H G  PY CN C  +F    +L N
Sbjct: 692 LANHQRT-HTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLAN 750

Query: 334 HE----CTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNED 389
           H         + C  C + +++   L  H+             +   KC  C ++FR   
Sbjct: 751 HRRIHTGEKPYRCTECGKAFRVRSSLTTHM--------AIHTGEKRYKCNECGKVFRQSS 802

Query: 390 KLTAHELSHTMEKTF 404
            L +H   HT EK +
Sbjct: 803 NLASHHRMHTGEKPY 817

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZNA1|ZN836_HUMAN Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 174/408 (42%), Gaps = 20/408 (4%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
           K Y C+ C  +F+  +++A H Q  H G   ++  +    F+ GS      I     K  
Sbjct: 300 KPYKCNECGKSFSQSYNLAIH-QRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPY 358

Query: 64  HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
              I     RQ        +  Q     E+ +KC +C KSF   SN+  H    H   K 
Sbjct: 359 QCDICGKVFRQ----NSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTV-HSGNKP 413

Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCK 182
           YKC  C + ++   +L  H  +H G K +TC  CDK FS +S L++H R H  E   +C 
Sbjct: 414 YKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCN 473

Query: 183 ICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCL 241
            C ++F     L  H + H   + +KC  C + F   + +  H  + H  E  ++C +C 
Sbjct: 474 ECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRH-KIIHTREKRYQCGECG 532

Query: 242 KVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
           KVFS+      H R H   + Y+C+ C K F     +  H R  H  E  + CN C   F
Sbjct: 533 KVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKR-IHTGEKPFQCNECGTVF 591

Query: 300 ETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNLRNHECTSCFTCPF-CQRKYKIEKHLE 356
              S L  H   H G  PY CN C  +F D  NL NH+       PF C    K+  +  
Sbjct: 592 RNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYY- 650

Query: 357 KHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
               SC+  +      +   KC  C + +     LT H + HT EK +
Sbjct: 651 ----SCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLIIHTGEKPY 694

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P0CJ79|ZN888_HUMAN Zinc finger protein 888 OS=Homo sapiens GN=ZNF888 PE=3 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 154/327 (47%), Gaps = 25/327 (7%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ +KC  C K+F  KS +  H    H  +K YKC  C +++  + NL  H ++H G K 
Sbjct: 162 EKPYKCNECGKTFSDKSALLVH-KTIHTGEKPYKCNECGKVFNQQSNLARHHRVHTGEKP 220

Query: 152 FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSH-QNRRFKCP 209
           + C +CDK FS KS L +H R H  E   +CK+C + F  D  L +H+  H + + +KC 
Sbjct: 221 YQCKECDKVFSRKSYLERHRRIHTGEKPYKCKVCDKAFRHDSHLAQHIVIHTREKPYKCN 280

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C + F   + +  H  + H  E  +KC +C KVF+ +     H R H   K Y+C EC+
Sbjct: 281 ECGKTFGENSALLVHKTI-HTGEKPYKCNECGKVFNQQSNLARHHRLHTGEKPYKCKECD 339

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLV-DHFFHHGN-PYMCNHCFLMF 325
           K F+ +  + +H R  H  E  Y C  C  +F   S L   H  H G  PY CN C  +F
Sbjct: 340 KVFSRKSHLERH-RRIHTGEKPYKCKVCDKAFRRDSRLAYHHRLHTGEKPYKCNECGKVF 398

Query: 326 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
             +  L    R H     + C  C + + I+ HLE H        P         KCR C
Sbjct: 399 RTQSQLACHHRLHTGEKPYKCEECDKVFNIKSHLEIHRRVHTGEKPY--------KCRVC 450

Query: 382 QRMFR----NEDKLTAHELSHTMEKTF 404
            + F     +   L  H+  HT +K++
Sbjct: 451 DKAFGKAFTSRSHLIRHQRIHTGQKSY 477

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q3ZCX4|ZN568_HUMAN Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 PE=2 SV=2

 Score =  138 bits (347), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 146/323 (45%), Gaps = 21/323 (6%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ ++C+ C K+F  K N+  H    H  +K YKC  C + +    NL  H ++H G K 
Sbjct: 247 EKPYECKECGKAFSRKENLITHQ-KIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKP 305

Query: 152 FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 209
           + C  C KAFS KSNL +H R H  E   +CK C + F   + L EH K H   + + C 
Sbjct: 306 YACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACN 365

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C R F+  + +  H+   H  E  +KC KC K FS    F +H R+H   K Y CSEC 
Sbjct: 366 ECGRAFSRMSSVTLHM-RSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECG 424

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 325
           K F+    +  H RN H  E  Y C  C  +F  K  L+ H   H G  PY C+ C   F
Sbjct: 425 KAFSQSSSLTVHMRN-HTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAF 483

Query: 326 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
               NL    R H     + C  C + +  + +L +H +      P          C  C
Sbjct: 484 IQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPY--------HCNQC 535

Query: 382 QRMFRNEDKLTAHELSHTMEKTF 404
            + F     L  HE  HT EK F
Sbjct: 536 GKAFSQRQNLLEHEKIHTGEKPF 558

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q5R8X1|ZN665_PONAB Zinc finger protein 665 OS=Pongo abelii GN=ZNF665 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 151/326 (46%), Gaps = 27/326 (8%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ +KC  C K+F  +S++  H    H  +K YKC  C +++R+   L  H ++H G K 
Sbjct: 250 EKPYKCNECGKAFSVRSSLTTHQT-IHTGEKPYKCNECGKVFRHNSYLTKHRRVHTGEKP 308

Query: 152 FTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 209
           + C +C KAFS+ SNL+KH + H  E   +C  C+++F     L  H + H   + ++C 
Sbjct: 309 YKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCD 368

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C + F+  + +  H  + H  E  +KC  C KVF+       H   H+  K Y+C EC 
Sbjct: 369 ECGKAFSVRSSLTTHQAI-HTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECG 427

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHHGN-PYMCNHCFLMF 325
           K F+    + +H+R  H  E  Y CN C  +F   S+L  H   H G  PY CN C  +F
Sbjct: 428 KAFSQTSQLARHWR-VHTGEKPYKCNECGKAFSVHSSLTTHQTIHTGQKPYKCNDCGKVF 486

Query: 326 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQ---KC 378
                L    R H     + C  C + + +  +L  H            V+ T +   KC
Sbjct: 487 RHNSYLAVHQRIHTGEKPYKCNECGKAFSVHSNLATH-----------QVIHTGEKPYKC 535

Query: 379 RYCQRMFRNEDKLTAHELSHTMEKTF 404
             C ++F     L  H   HT EK +
Sbjct: 536 NECGKVFTQNSHLANHRRIHTGEKPY 561

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
366039961	581	zinc-finger protein 80-like [Mus musculu	0.909	0.657	0.311	4e-37
390365308	646	PREDICTED: zinc finger protein 658B-like	0.909	0.591	0.272	4e-36
326676493	689	PREDICTED: zinc finger protein 845-like	0.883	0.538	0.284	5e-36
195500481	537	GE26193 [Drosophila yakuba] gi|194183493	0.921	0.720	0.287	1e-34
358416962	1156	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.85	0.308	0.291	1e-34
125804658	519	PREDICTED: zinc finger protein 84-like [	0.719	0.581	0.313	1e-34
351700788	513	Zinc finger protein 420, partial [Hetero	0.754	0.617	0.286	2e-34
348551881	867	PREDICTED: zinc finger protein 624-like	0.857	0.415	0.275	2e-34
390345459	581	PREDICTED: zinc finger protein 84-like [	0.738	0.533	0.311	3e-34
326676531	711	PREDICTED: zinc finger protein 850 [Dani	0.907	0.535	0.275	3e-34

>gi|366039961|ref|NP_001242994.1| zinc-finger protein 80-like [Mus musculus]

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/414 (31%), Positives = 197/414 (47%), Gaps = 32/414 (7%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFR---NGSFYIRADIEQPKV 60
           K Y C+ C  AF+LK+S+  HI+T H G    +  +   AF    N   + R    +   
Sbjct: 159 KPYKCNQCDKAFSLKYSLQRHIRT-HTGEKPFKCNQCEKAFSHHCNLQTHRRTHTREKPF 217

Query: 61  KVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDL 120
           K   E   +++  Q    Q  +    G    E+ FKC  C K+F  K ++++H+ + H  
Sbjct: 218 KCN-ECDKAFS--QFGNLQNHRRTHTG----EKPFKCNECDKAFSEKGSLQKHI-SIHTG 269

Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVK 179
           +K YKC  C + + +K +L  H+++H G K + C QCDKAFS K  L  H+R H  E   
Sbjct: 270 EKPYKCNQCDKAFSHKQSLLIHIRIHTGEKPYKCNQCDKAFSHKHILKNHIRIHSGEKPY 329

Query: 180 QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCK 238
           +C +C ++F     L+ H+++H   + ++C  C++ F+    ++ H    H  E  FKC 
Sbjct: 330 KCNLCDKVFSRHFHLQNHIRTHTGEKPYRCNQCDKAFSHHKTLQTHRKT-HTGEKPFKCN 388

Query: 239 KCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCY 296
           +C K FS++     H R H   K Y+C++C+K F+ +  ++ H R  H  E  Y CN C 
Sbjct: 389 ECDKAFSEKGSLQSHIRTHTGEKPYKCNQCDKAFSHKQNLQIHIR-IHTGEKPYKCNQCD 447

Query: 297 DSFETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYK 350
            +F  K  L  H   H G  PY CN C   F  + NL+ H  T      F C  C + + 
Sbjct: 448 KAFSYKQNLQIHIRIHTGEKPYKCNQCDKAFLHQGNLQTHRRTHTRDKPFQCNLCDKVFS 507

Query: 351 IEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
              HL+ HI +  +  P         KC  C + F     L  H  +HT EK F
Sbjct: 508 RHFHLQNHIRTHTREKPY--------KCNECGKGFSQHSSLQTHRRTHTGEKPF 553

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390365308|ref|XP_784091.2| PREDICTED: zinc finger protein 658B-like [Strongylocentrotus purpuratus]

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 194/414 (46%), Gaps = 32/414 (7%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
           K + C  C+  +  + ++A HI T H+G   +Q +     F   S Y++  I        
Sbjct: 211 KPFKCSVCNKGYVKRSTLAVHITT-HIGAQSYQCSVCNETFSQ-SDYLKEHI------AT 262

Query: 64  HETIMSYARRQV--EYEQEQQIPAQGKS-IQERKFKCEMCPKSFDHKSNIRRHMAATHDL 120
           H+  + Y   Q    +++ + +    ++   E+ F+C +CPKSF  +S +R+HM   H  
Sbjct: 263 HKKYLRYTCSQCGKSFQRSRNLDDHIRTHTGEKPFQCTLCPKSFAQRSGVRKHMT-IHSG 321

Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK- 179
           +K Y+C +C   +     L  H++ H   + F C+ C++ FS  S+LS+H+  H+ +   
Sbjct: 322 EKPYQCTVCQTSFARTEGLAVHMRTHTKEQPFQCSVCNRRFSHGSSLSEHMGTHIGDAPM 381

Query: 180 QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCK 238
            C +C + F  +  L  H++ H  ++ + CP CE+ F   + +R+H    H  E  + C 
Sbjct: 382 NCPVCNKGFYYNSGLVSHMRIHTGKKPYACPDCEKFFPRLSSLRSH-RRTHTGEKPYVCT 440

Query: 239 KCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCY 296
            C K F+       H R H   K Y+C+ C+KR+A   ++  H RN H  E+ Y C+ C 
Sbjct: 441 ICKKAFAQSTGLSTHMRVHTGEKPYQCTLCDKRYAQSGLLTIHMRN-HTGENPYKCSVCE 499

Query: 297 DSFETKSTLVDHFFHHGN--PYMCNHCFLMFPDEKNLRNHE----CTSCFTCPFCQRKYK 350
            +F +K TL  H   H    P+ C  C   F  + +L NH+        + C  C +++ 
Sbjct: 500 KAFTSKKTLTKHLRTHTGERPFECPVCKKAFARDDSLLNHQKIHTGERNYQCSVCDKRFI 559

Query: 351 IEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
            ++ L  H+ +     P         +C  C+  F     LTAH  +HT EK +
Sbjct: 560 QKQGLSTHMRTHTGDRPF--------QCSVCEHWFAQRSTLTAHMRTHTGEKPY 605

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|326676493|ref|XP_689690.3| PREDICTED: zinc finger protein 845-like [Danio rerio]

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 194/453 (42%), Gaps = 82/453 (18%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
           K +TC  C   F +KHS+  H++        H   K Y     G      +  + ++  +
Sbjct: 119 KPFTCPDCGKKFRIKHSLEGHMRI-------HTGEKPYKCRECG-----KNFREKQILDK 166

Query: 64  HETIMSYARRQVEYEQEQQIPAQGKSIQ--------------ERKFKCEMCPKSFDHKSN 109
           H TI +        E+    P  G++ +              E+ + C+ C  SF  K N
Sbjct: 167 HLTIHTG-------EKPYSCPECGRNFRVKKCLENHIKTHTGEKPYTCQDCGISFAVKQN 219

Query: 110 IRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSK 169
           ++RHM   H  +K Y C  C R +R K +LK+H+++H G K F+C QC K+FS    L  
Sbjct: 220 LKRHMRI-HTGEKPYSCPECGRSFRVKQDLKSHVRIHTGEKPFSCQQCGKSFSENKTLES 278

Query: 170 HVRHHM-----------------ENVK------------QCKICLEIFEDDEVLEEHVKS 200
           H+R H                  +N+K             C  C + + + + LE H+++
Sbjct: 279 HMRIHTGEKPFTCSQCGKNFRRKQNLKSHMRLHTGDKPYSCPQCGKSYNEQKSLENHIRT 338

Query: 201 HQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA- 258
           H   + F C  C + FT ++ +R HI + H  E  + C++C K F+++     H R H  
Sbjct: 339 HTGEKPFACDQCGKTFTQQSTLRGHIKI-HTGEKPYTCQECGKSFTEKQNLKRHMRIHTG 397

Query: 259 -KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-P 315
            K + CS C K F     ++ H R  H  E  + C  C  SF     L  H   H G  P
Sbjct: 398 EKPFTCSHCGKSFRVSKDLKIHVR-IHTGEKPFSCQQCGKSFSENKKLTSHMRIHTGEKP 456

Query: 316 YMCNHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTV 371
           ++C+HC   F  ++NL    R H     +TCP C + Y  +K LE HI S     P    
Sbjct: 457 FVCSHCGKRFRGKQNLESHIRLHTGEKRYTCPQCGKSYNEQKSLENHIRSHTGEKPFA-- 514

Query: 372 LKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
                 C  C + FR +  L  H   HT EK F
Sbjct: 515 ------CDQCGKSFRQQRILKGHIRIHTGEKPF 541

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195500481|ref|XP_002097392.1| GE26193 [Drosophila yakuba] gi|194183493|gb|EDW97104.1| GE26193 [Drosophila yakuba]

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 195/435 (44%), Gaps = 48/435 (11%)

Query: 5   TYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADI---EQPKVK 61
           T+ C  C  AF  K ++  H++T H+G    + +     F + S Y R  +   E    K
Sbjct: 85  TFKCTLCQKAFTRKENLQTHLRT-HIGERPFECSHCSKTFGSSSHYKRHLLIHAENRPFK 143

Query: 62  VEH--ETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHD 119
             H  +T +         +Q  +I        ER F C  C  SF  KS++  HM   H 
Sbjct: 144 CPHCSKTFI----LNTSLKQHLRI-----HTGERPFSCSQCSASFTVKSSLHTHMIV-HT 193

Query: 120 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK 179
            ++ +KC  C+  +  K N + HL+ H G + F C  C KAF   S+L +H+R HME   
Sbjct: 194 GERPFKCTQCSTSFARKSNFQEHLRAHTGERPFKCIHCPKAFKSNSHLQEHLRTHMEARP 253

Query: 180 -QCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCK 238
            +C  C + F+   +L++H+++H    FKC  C + F     ++ H+ + HA EN ++C 
Sbjct: 254 FECSHCSKSFKLKSILQKHLRTHTEGSFKCTQCTKTFAENASLQIHLRV-HAGENPYECS 312

Query: 239 KCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCY 296
            C + F+    F LH   HA  +  +CS+C   FA   +++ H R+ H +E  + C  C 
Sbjct: 313 HCSETFASNSTFQLHLLKHAGKEPLKCSQCSATFAMRSLLQIHVRS-HTRERKFKCAECS 371

Query: 297 DSFETKSTLVDHFFHH--GNPYMCNHCFLMFPD----EKNLRNHECTSCFTCPFCQRKYK 350
            SF  K+ L +H   H  G P+ C HC   F      + +L++H       C +C +++K
Sbjct: 372 KSFFRKTHLKEHQVVHTGGRPFKCTHCSKDFRHRSHLQVHLQDHTGKKPLMCSYCSKEFK 431

Query: 351 IEKHLEKHIES--------CIQLNPTTTVLKTLQ-------------KCRYCQRMFRNED 389
           +   L+ H+          C   + T      LQ             KC YC + F    
Sbjct: 432 LHSQLQVHLRDHTGKSPFECSHCSKTYLAKSNLQIHLRSHTGEELPFKCSYCSKSFARSG 491

Query: 390 KLTAHELSHTMEKTF 404
              AH L HT EK F
Sbjct: 492 DHKAHLLVHTGEKPF 506

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358416962|ref|XP_003583526.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 729 [Bos taurus]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 186/411 (45%), Gaps = 54/411 (13%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
           K + CD C   F+    +A H Q+ H G   ++  +   AFR  S  +R           
Sbjct: 547 KLFKCDICDKVFSRSEQLAGH-QSVHSGEKPYKCDECGKAFRVKSILLR----------- 594

Query: 64  HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
           H+T+ +                      E+ +KC+ C K+F H SN+RRH    H  QK 
Sbjct: 595 HQTVHT---------------------GEKPYKCDECGKAFTHSSNLRRHQK-IHTGQKL 632

Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHMENVKQCK 182
           +KC +C +++    +L  H  +H G K + C +CDKAF +KS L  H   H  E   +C+
Sbjct: 633 FKCDICDKVFSRSEHLAGHQSVHSGAKPYKCDECDKAFRVKSILLIHQTVHTGEKPYKCE 692

Query: 183 ICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCL 241
            C + F     L  H K H  ++ FKC  C+++F    ++  H  + H+    +KC +C 
Sbjct: 693 ECGKAFTHSSNLRRHQKIHTGQKLFKCDICDKVFNRSEQLAGHQSV-HSGAKPYKCNECG 751

Query: 242 KVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
           K F    +F  H R H   K Y+C EC K F  + I+ +H +  H  E  Y C+ C  +F
Sbjct: 752 KHFGQPSQFISHKRLHTAEKPYKCDECGKAFRVKSILLRH-QTVHTGEKPYKCDECGKAF 810

Query: 300 ETKSTLVDH-FFHHGN-PYMCNHCFLMFPDEKNLRNHECTSCFTCPF----CQRKYKIEK 353
             KSTL+ H   H G  PY C+ C   F  +  L +H+       P+    C + ++++ 
Sbjct: 811 RVKSTLLRHQTVHTGEKPYKCDECGKAFRVKSMLLSHQTVHTGEKPYKCNECGKAFRVKA 870

Query: 354 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
            L +H         T    +   KC  C + FR +  L +H+  HT EK +
Sbjct: 871 ILFRH--------QTVHTGEKPYKCDECGKAFRVKSMLLSHQTVHTGEKPY 913

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|125804658|ref|XP_001342130.1| PREDICTED: zinc finger protein 84-like [Danio rerio]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 158/325 (48%), Gaps = 23/325 (7%)

Query: 90  IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           I+E+ F C +C  SF H+ +++RHM   H  +K Y C+ C + +  K +L++H+++H G 
Sbjct: 173 IEEKPFNCSLCEMSFTHQQSLKRHMLI-HVGEKPYVCRQCGKSFSVKQSLESHIRIHTGE 231

Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHMENVK--QCKICLEIFEDDEVLEEHVKSHQNRR-F 206
           K F CA+C K F++K NL  H+R H   VK   C  C + F   + LE H+  H   R F
Sbjct: 232 KPFACAECGKGFAVKQNLESHMRVHT-GVKPFSCPQCGKRFTVKQSLESHMTIHTGERPF 290

Query: 207 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
            C  C++ FT + ++  H+   H  E  + C +C   ++       H R H   K + CS
Sbjct: 291 TCSMCDKTFTVKHKLEYHMR-NHTGEKPYICPQCGNSYALRNHLERHVRIHTGEKPFSCS 349

Query: 265 ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCF 322
           +C KRF  +  ++ H R  HN+   Y+C+ C   F  K +L  H   H G  P+ C  C 
Sbjct: 350 KCAKRFTMKQSLKSHMR-VHNRTKPYICSQCGKRFTVKQSLESHMSLHTGEKPFTCTECG 408

Query: 323 ----LMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKC 378
               L    E ++R H    CF+C  C R + ++++L  H+       P T        C
Sbjct: 409 KSYTLRQSLETHMRVHTGDKCFSCSDCGRSFTVKQNLHVHMRVHTGERPYT--------C 460

Query: 379 RYCQRMFRNEDKLTAHELSHTMEKT 403
             C + F    +L  H   HT +KT
Sbjct: 461 AQCGKRFTQHGQLNRHMRIHTEQKT 485

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351700788|gb|EHB03707.1| Zinc finger protein 420, partial [Heterocephalus glaber]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 157/366 (42%), Gaps = 49/366 (13%)

Query: 77  YEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYK 136
           + +   +P Q  +I+   + C+ C K+F   SN+ RHM  TH  +K Y+CK C + +   
Sbjct: 109 HSEGHAVPVQMHTIKH--YACKTCGKAFGRSSNLNRHMR-THTGEKPYECKECRKPFTTY 165

Query: 137 WNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHHMENVKQCKICLEIFEDDEVLE 195
             L  H + H G K + C  C KAF+ +S L  HV  H  E   +CK C + F     L 
Sbjct: 166 SRLVEHFRTHTGEKPYKCKDCGKAFTKRSGLITHVPTHASEKPYECKQCGKAFASSPRLS 225

Query: 196 EHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF--SDEIKFHL 252
           +HV++H   R + C  C R F + + +RNH+   H+ E  + C +C K F  S  ++ H+
Sbjct: 226 QHVRTHSGERPYTCKECGRAFLTSSYLRNHVRRTHSGERPYICGECGKAFHSSSYLRRHV 285

Query: 253 HGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH 312
              +  + + C EC + F T   +  H R  H+ E  Y+C  C   F   S L  H   H
Sbjct: 286 KTHSGERPFTCKECGRAFLTSSYLHNHVRKTHSGEVPYICGECGKVFHASSYLRRHVRTH 345

Query: 313 GN--PYMCNHCFLMFPDEKNLRNH----------ECTSC--------------------- 339
               PY+C  C   F +   LR H          EC  C                     
Sbjct: 346 SGERPYICKECGKAFLNVSYLRKHLTIHTGEKPYECQECGKAYNRCNLLNEHLKTHTVEK 405

Query: 340 -FTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH 398
            F C  C + ++   +L KH+     + P         KC+YC + F      T H  SH
Sbjct: 406 PFDCHVCGKSFQYFSYLTKHVRIHTGIKP--------YKCKYCGKAFTTSSSRTEHVRSH 457

Query: 399 TMEKTF 404
           T E+ +
Sbjct: 458 TGERPY 463

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348551881|ref|XP_003461757.1| PREDICTED: zinc finger protein 624-like [Cavia porcellus]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 172/414 (41%), Gaps = 54/414 (13%)

Query: 34  KHQDTKQYPAFRNGSFYIRADIEQ-PKVKVEHETIMSYARRQV----EYEQEQQIPAQGK 88
           + Q +   P  R+ S     D  Q  ++  EH    ++ + Q+     +     +P Q  
Sbjct: 100 RGQTSHGMPTARSQSAGELCDSAQCGEIFSEHSYFKTHLKTQIYGNFPHSTGHTVPVQVH 159

Query: 89  SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
           ++  + + C+ C K+F   SN+ RHM  TH  +K Y+CK C + +     L  H + H G
Sbjct: 160 AV--KHYACKTCGKAFGRSSNLNRHM-RTHTGEKPYECKECRKPFTTYSRLVEHFRTHTG 216

Query: 149 PKIFTCAQCDKAFSLKSNLSKHV-RHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-F 206
            K + C  C KAF+ +S L  H+  H  E   +C  C + F     L +HV++H   R +
Sbjct: 217 EKPYQCKDCGKAFTKRSGLITHLPTHASEKPYECTQCGKAFASPPRLSQHVRTHSGERPY 276

Query: 207 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCS 264
            C  C R F + + +RNH+   H+ E  + C +C K F      H H R H+  + + C 
Sbjct: 277 VCKECGRAFLTSSYLRNHVRRTHSGERPYVCGECGKAFHSSSYLHRHVRTHSGERPFTCK 336

Query: 265 ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCF 322
           EC + F T   +  H R  H+ E  Y+C  C   F   S L  H   H    PY+C  C 
Sbjct: 337 ECGRAFLTSSYLHNHVRKTHSAEIPYICGECGKVFHASSYLRRHVRTHSGERPYICKECG 396

Query: 323 LMFPDEKNLRNH----------ECTSC----------------------FTCPFCQRKYK 350
             F +   LR H          EC  C                      F C  C + ++
Sbjct: 397 KAFLNVSYLRKHLTIHTGEKPYECQECGKAYNRCNLLNEHLKTHTVEKPFDCHVCGKSFQ 456

Query: 351 IEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
              +L KHI     + P         KC+YC + F      T H  SHT E+ +
Sbjct: 457 YFSYLTKHIRIHTGIKP--------YKCKYCGKAFTTSSSRTEHIRSHTGERPY 502

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390345459|ref|XP_003726339.1| PREDICTED: zinc finger protein 84-like [Strongylocentrotus purpuratus]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 167/343 (48%), Gaps = 33/343 (9%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ FKC +C K F  ++++  H+  TH  +K +KC  C + +  + NL  H++ H G K 
Sbjct: 151 EKPFKCSLCDKDFTQQNHLTSHLR-THTGEKPFKCSHCDKGFSCRSNLNCHVRTHTGEKP 209

Query: 152 FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 209
           F C+QCDK FS K+ L  H+R H  E   QC  C + F   +VL  H+++H   + FKC 
Sbjct: 210 FECSQCDKGFSQKTTLINHLRTHSGEKPYQCPYCEKEFSKKDVLTTHLRTHTGEKPFKCS 269

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C + F+ +T++  H+   H  E  FKC +C K FS      +H R H+  K ++C  C+
Sbjct: 270 QCHKEFSQKTKLTRHLRT-HTGEKPFKCSQCDKDFSYRSTLFIHLRIHSGEKPHQCPYCD 328

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHCFLMF 325
           K F+ +  + +H R  H  E  + C+ C   F  +S L  H   H    P+ C +C   F
Sbjct: 329 KEFSLKAKLTRHLRT-HTGEKPFKCSQCDKDFSHRSALFIHLRTHSGEKPHQCPYCDKGF 387

Query: 326 PDEK----NLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNP------------TT 369
             +     +LR H     F C  C + +  + HL  H+ +     P             T
Sbjct: 388 SQKSQLTSHLRIHTGEKPFKCSQCDKDFTQQNHLTSHLRTHTGEKPFKCSHCDTGFSQKT 447

Query: 370 TVLKTLQ--------KCRYCQRMFRNEDKLTAHELSHTMEKTF 404
           T++  L+        +C YC++ F  +D+LT H  +HT EK F
Sbjct: 448 TLINHLRTHSGERPYQCPYCEKEFSKKDELTTHIRTHTGEKPF 490

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|326676531|ref|XP_003200602.1| PREDICTED: zinc finger protein 850 [Danio rerio]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 195/443 (44%), Gaps = 62/443 (13%)

Query: 4   KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNG-SFYIRADIEQPKVKV 62
           K YTC  C  +FA+K ++  H++        H   K Y     G SF ++ D+   K+ V
Sbjct: 197 KPYTCQECGKSFAIKQNLERHMRI-------HTGEKPYSCPECGRSFRVKQDL---KIHV 246

Query: 63  E---HETIMSYARRQVEYEQEQQIPAQGK-SIQERKFKCEMCPKSFDHKSNIRRHM---- 114
                E   S  +    + + +++ +  +    E+ F C  C K+F  K N+  HM    
Sbjct: 247 RIHTGEKPFSCQQCGKSFTENKKLESHMRIHTGEKPFVCSHCGKNFRGKQNLESHMRLHT 306

Query: 115 -----------------------AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
                                    TH  +K + C  C + + ++ NLK H+++H G K 
Sbjct: 307 GSKPYTCPQCGKSYNQQKSLDIHIRTHTGEKPFACDQCGKSFTHQSNLKGHIRIHTGEKP 366

Query: 152 FTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCP 209
           FTC QC K+F  K+ L +H + H  E    C+ C + F + ++L++H+  H   + + CP
Sbjct: 367 FTCPQCGKSFIEKTKLERHKKIHSGEKPYDCQHCKKSFTEKQILDKHLTIHTGEKPYSCP 426

Query: 210 CCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECE 267
            C + F  +  + NHI + H  E  + C++C K F+++     H R H   K + C EC 
Sbjct: 427 ECGKSFRVKNCLENHIKI-HTGEKPYTCQECGKSFTEKQNLERHIRIHTGEKPFACPECG 485

Query: 268 KRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMF 325
           + F  +  ++ H R  H  E  + C  C  SF     L +H   H G  P++C+HC   F
Sbjct: 486 RSFRVKQDLKIHLR-IHTGEKPFSCQQCGKSFSENKKLENHMRIHTGEKPFVCSHCGKNF 544

Query: 326 PDEKNL----RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
             ++NL    R H     +TCP C + Y  +K L+ HI +     P          C  C
Sbjct: 545 RGKQNLESHMRLHTGNQPYTCPQCGKSYNQQKSLQIHIRTHTGEKPFA--------CDQC 596

Query: 382 QRMFRNEDKLTAHELSHTMEKTF 404
            + F  +  L  H   HT EK F
Sbjct: 597 GKSFTQQSTLKGHIKIHTGEKPF 619

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
ZFIN|ZDB-GENE-120214-27	493	si:ch73-367f21.4 "si:ch73-367f	0.897	0.764	0.274	2.3e-46
ZFIN|ZDB-GENE-110914-121	541	si:ch211-202h22.10 "si:ch211-2	0.897	0.696	0.287	4.8e-46
UNIPROTKB|Q05481	1191	ZNF91 "Zinc finger protein 91"	0.911	0.321	0.295	5.2e-45
ZFIN|ZDB-GENE-120214-29	518	si:ch73-367f21.5 "si:ch73-367f	0.907	0.735	0.291	2.4e-44
UNIPROTKB|P17035	718	ZNF28 "Zinc finger protein 28"	0.909	0.532	0.290	6.1e-44
ZFIN|ZDB-GENE-110913-129	380	si:dkey-176f19.2 "si:dkey-176f	0.816	0.902	0.297	6.4e-44
UNIPROTKB|F1MJE7	1173	F1MJE7 "Uncharacterized protei	0.916	0.328	0.299	6.9e-44
UNIPROTKB|F1LVU4	738	LOC100365915 "Protein LOC10036	0.921	0.524	0.302	1.3e-43
UNIPROTKB|F1MQS9	842	LOC100847180 "Uncharacterized	0.911	0.454	0.296	1.9e-43
UNIPROTKB|J9PBN9	758	ZNF425 "Uncharacterized protei	0.916	0.507	0.286	2.5e-43

ZFIN|ZDB-GENE-120214-27 si:ch73-367f21.4 "si:ch73-367f21.4" [Danio rerio (taxid:7955)]

 Score = 460 (167.0 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 113/411 (27%), Positives = 196/411 (47%)

Query:     6 YTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGS-FYIRADIEQPKVKVEH 64
             +TC  C   F +KHS+  H++  H G       K +     G  F I+  +E   +++ H
Sbjct:    93 FTCPECDKCFTMKHSLESHLKI-HTGE------KPFTCPDCGKKFRIKHSLEG-HMRI-H 143

Query:    65 ETIMSYARRQVEYE-QEQQIPAQGKSIQ--ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ 121
                  Y  R+     +E+QI  +  +I   E+ + C  C ++F  K  +  H+  TH  +
Sbjct:   144 TGEKPYKCRECGKNFREKQILDKHLTIHTGEKPYSCPECGRNFRVKKCLENHIK-THTGE 202

Query:   122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQ 180
             K Y C+ C   +  K NLK H+++H G K ++C +C ++F +K +L  HVR H  E    
Sbjct:   203 KPYTCQDCGISFAVKQNLKRHMRIHTGEKPYSCPECGRSFRVKQDLKSHVRIHTGEKPFS 262

Query:   181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
             C+ C + F +++ LE H++ H   + F C  C + F  +  +++H+ + H  +  + C +
Sbjct:   263 CQQCGKSFSENKTLESHMRIHTGEKPFTCSQCGKNFRRKQNLKSHMRL-HTGDKPYSCPQ 321

Query:   240 CLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYD 297
             C K ++++     H R H   K + C +C K F  +  +R H +  H  E  + C  C  
Sbjct:   322 CGKSYNEQKSLENHIRTHTGEKPFACDQCGKTFTQQSTLRGHIK-IHTGEKPFTCPQCGK 380

Query:   298 SFETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKI 351
             SF  ++ L  H   H G  P+ C+HC   F  +++L    R H     +TC  C++ + +
Sbjct:   381 SFIERTKLERHKKIHSGEKPFDCHHCKKSFTMKQSLDIHMRIHTGEKLYTCQQCKKSFAV 440

Query:   352 EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 402
             ++  + H+       P T        C+ C + FR + KL +H   HT EK
Sbjct:   441 KQKFDSHMTIHTGEKPYT--------CQQCGKCFREKRKLVSHMKVHTEEK 483

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110914-121 si:ch211-202h22.10 "si:ch211-202h22.10" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 120/417 (28%), Positives = 197/417 (47%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFY-IRADIEQPKVKV 62
             K +TC  C   F+    +  H++T       H   K +   + G  Y ++  +E   ++V
Sbjct:   114 KPFTCPECGMIFSQLGYLKRHVRT-------HTGLKPFSCTQCGKRYKVKQSLES-HMRV 165

Query:    63 EHETIMSYARRQVE--YEQEQQIPAQ-GKSIQERKFKCEMCPKSFDHKSNIRRHMAATHD 119
              H     +A  Q    +  +Q + +     I+E+ F C +C  SF H+ +++RHM   H 
Sbjct:   166 -HTGEKPFACPQCGKGFTAKQCLKSHMSVHIEEKPFNCSLCEMSFTHQQSLKRHMLI-HV 223

Query:   120 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK 179
              +K Y C+ C + +  K +L++H+++H G K F CA+C K F++K NL  H+R H   VK
Sbjct:   224 GEKPYVCRQCGKSFSVKQSLESHIRIHTGEKPFACAECGKGFAVKQNLESHMRVHT-GVK 282

Query:   180 --QCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFK 236
                C  C + F   + LE H+  H   R F C  C++ FT + ++  H+   H  E  + 
Sbjct:   283 PFSCPQCGKRFTVKQSLESHMTIHTGERPFTCSMCDKTFTVKHKLEYHM-RNHTGEKPYI 341

Query:   237 CKKCLKVFSDEIKFHL--HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
             C +C   ++  ++ HL  H R H   K + CS+C KRF  +  ++ H R  HN+   Y+C
Sbjct:   342 CPQCGNSYA--LRNHLERHVRIHTGEKPFSCSKCAKRFTMKQSLKSHMR-VHNRTKPYIC 398

Query:   293 NYCYDSFETKSTLVDHF-FHHGN-PYMCNHC---FLMFPD-EKNLRNHECTSCFTCPFCQ 346
             + C   F  K +L  H   H G  P+ C  C   + +    E ++R H    CF+C  C 
Sbjct:   399 SQCGKRFTVKQSLESHMSLHTGEKPFTCTECGKSYTLRQSLETHMRVHTGDKCFSCSDCG 458

Query:   347 RKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT 403
             R + ++++L  H+       P T        C  C + F    +L  H   HT +KT
Sbjct:   459 RSFTVKQNLHVHMRVHTGERPYT--------CAQCGKRFTQHGQLNRHMRIHTEQKT 507

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q05481 ZNF91 "Zinc finger protein 91" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.2e-45, Sum P(2) = 5.2e-45
 Identities = 121/409 (29%), Positives = 180/409 (44%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
             K Y C+ C  AF    ++  H +  H G   ++  +   AFR      +  I   + K  
Sbjct:   488 KPYKCEECGKAFRQSSTLTKH-KIIHTGEKPYKFEECGKAFRQSLTLNKHKIIHSREKPY 546

Query:    64 HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
                    A +Q       +I   GK +    +KCE C K+F+H S++  H    H  +K 
Sbjct:   547 KCKECGKAFKQFSTLTTHKIIHAGKKL----YKCEECGKAFNHSSSLSTHKII-HTGEKS 601

Query:   124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCK 182
             YKC+ C + + +   L+ H ++H G K + C +C KAFS  S L+KH R H  E   +CK
Sbjct:   602 YKCEECGKAFLWSSTLRRHKRIHTGEKPYKCEECGKAFSHSSALAKHKRIHTGEKPYKCK 661

Query:   183 ICLEIFEDDEVLEEHVKSH-QNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCL 241
              C + F +   L  H  +H + + +KC  C++ F   + +  H  + HA E L+KC++C 
Sbjct:   662 ECGKAFSNSSTLANHKITHTEEKPYKCKECDKTFKRLSTLTKH-KIIHAGEKLYKCEECG 720

Query:   242 KVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
             K F+      +H   H   K Y+C EC K F     + +H R  H +E  + C  C  +F
Sbjct:   721 KAFNRSSNLTIHKFIHTGEKPYKCEECGKAFNWSSSLTKHKR-IHTREKPFKCKECGKAF 779

Query:   300 ETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKIEK 353
                STL  H   H G  PY C  C   F     L  H+        + C  C + +K   
Sbjct:   780 IWSSTLTRHKRIHTGEKPYKCEECGKAFSRSSTLTKHKTIHTGEKPYKCKECGKAFKHSS 839

Query:   354 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 402
              L KH    I         + L KC  C + F     LT H++ HT EK
Sbjct:   840 ALAKH--KIIHAG------EKLYKCEECGKAFNQSSNLTTHKIIHTKEK 880

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0008270 "zinc ion binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

ZFIN|ZDB-GENE-120214-29 si:ch73-367f21.5 "si:ch73-367f21.5" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 120/411 (29%), Positives = 186/411 (45%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNG-SFYIRADIEQPKVKV 62
             K + C +C   F +KHS+  H++  H G       K YP    G SF  +  +E+     
Sbjct:   116 KPFICPYCGKNFRIKHSLEGHMRI-HTGE------KPYPCQVCGKSFREKQSLEKHLTIH 168

Query:    63 EHETIMSYARRQVEYEQEQQIPAQGK-SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQ 121
               E   S       +  +  +    K    E+ + C+ C KSF  K N++RHM   H  +
Sbjct:   169 TGEKPYSCPECGKSFRVKNCLENHIKIHTGEKPYTCQECGKSFTEKQNLKRHMRI-HTGE 227

Query:   122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQ 180
             K + C  C + +R   +LK H+++H G K F+C QC K+FS    L+ H+R H  E    
Sbjct:   228 KPFTCSHCGKSFRVSKDLKIHVRIHTGEKPFSCQQCGKSFSENKKLTSHMRIHTGEKPFV 287

Query:   181 CKICLEIFEDDEVLEEHVKSHQN-RRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
             C  C + F   + LE H++ H   +R+ CP C + +  +  + NHI   H  E  F C +
Sbjct:   288 CSHCGKRFRGKQNLESHIRLHTGEKRYTCPQCGKSYNEQKSLENHI-RSHTGEKPFACDQ 346

Query:   240 CLKVFSDE--IKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYD 297
             C K F  +  +K H+      K + C +C K F  +  + +H +  H+ E  Y C++C  
Sbjct:   347 CGKSFRQQRILKGHIRIHTGEKPFTCPQCGKSFIEKTKLERH-KKIHSGEKPYTCHHCKK 405

Query:   298 SFETKSTLVDHF-FHHGNP-YMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKI 351
             SF  K +L  H   H G   Y C  C   F  ++ L +H         +TC  C + ++ 
Sbjct:   406 SFTMKQSLDIHMRIHTGEKLYTCQQCGKSFALKQRLISHMKVHTGEKPYTCLQCGKGFRE 465

Query:   352 EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 402
             ++ L+ H       NP T        C  C + FR + KL +H   HT EK
Sbjct:   466 KQSLDIHNRIHTGQNPFT--------CSQCGKSFRVKQKLVSHMRVHTEEK 508

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P17035 ZNF28 "Zinc finger protein 28" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 6.1e-44, P = 6.1e-44
 Identities = 119/410 (29%), Positives = 181/410 (44%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIR-ADIEQPKVKV 62
             K Y C  C  AF     +A H    H G   ++  +    F   S   R   +   +   
Sbjct:   325 KPYKCKVCDKAFTCNSYLAKHTII-HTGEKPYKCNECGKVFNRLSTLARHRRLHTGEKPY 383

Query:    63 EHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQK 122
             E E       R+   E+ ++I   G    E+ +KC++C K+F + S + +H +  H  +K
Sbjct:   384 ECEECEKVFSRKSHLERHKRIHT-G----EKPYKCKVCDKAFAYNSYLAKH-SIIHTGEK 437

Query:   123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQC 181
              YKC  C +++  +  L  H ++H   K + C +CDK F  KS+L +H R H  E   +C
Sbjct:   438 PYKCNECGKVFNQQSTLARHHRLHTAEKPYKCEECDKVFRCKSHLERHRRIHTGEKPYKC 497

Query:   182 KICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKC 240
             K+C + F  D  L EH + H   + + C  C ++F+++  +  H  + H  E  +KC++C
Sbjct:   498 KVCDKAFRSDSCLTEHQRVHTGEKPYMCNECGKVFSTKANLACHHKL-HTAEKPYKCEEC 556

Query:   241 LKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 298
              KVFS +     H R H   K Y+C  C+K F  +  + QH R  H  E  Y CN C  +
Sbjct:   557 EKVFSRKSHMERHRRIHTGEKPYKCKVCDKAFRRDSHLAQHQR-VHTGEKPYKCNECGKT 615

Query:   299 FETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNL----RNHECTSCFTCPFCQRKYKIE 352
             F   S+L+ H   H G  PY CN C   F    +L    R H     + C  C + +  +
Sbjct:   616 FRQTSSLIIHRRLHTGEKPYKCNECGKTFSQMSSLVYHHRLHSGEKPYKCNECGKVFNQQ 675

Query:   353 KHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK 402
              HL +H        P         KC  C + F     L  H   H+ EK
Sbjct:   676 AHLAQHQRVHTGEKP--------YKCNECGKTFSQMSNLVYHHRLHSGEK 717

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-110913-129 si:dkey-176f19.2 "si:dkey-176f19.2" [Danio rerio (taxid:7955)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 109/366 (29%), Positives = 156/366 (42%)

Query:    54 DIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQG--KSIQERKFKCEMCPKSFDHKSNIR 111
             D+++    +E           V+ E++  +   G  K   E  F C  C KSF   S++ 
Sbjct:    23 DLQELTDPIEENVESKEEEHHVKIEEKTHLQTDGILKRRDENCFTCTQCGKSFSQSSSLN 82

Query:   112 RHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV 171
              HM + H  +K + C  C + +    +L  H+++H G K FTC QC K+FS  SNL+ H+
Sbjct:    83 LHMMS-HTGEKPFTCTQCGKTFNCSSHLNQHMRIHTGEKPFTCTQCGKSFSQSSNLNLHM 141

Query:   172 RHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKH 229
             R H  E   QC  C + F     L +H++ H   + F C  C + F   + +  H+ + H
Sbjct:   142 RIHTGEKPFQCTQCGKSFSHSSSLNQHMRIHTGEKTFTCSQCGKSFNCLSLLNKHMKI-H 200

Query:   230 ADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
               E  F C +C K FS     + H R H   K + C++C K F     + QH +  H  E
Sbjct:   201 TGEKPFTCTQCGKSFSQSTSLNQHMRIHTGEKPFSCTQCGKSFRQSSSLNQHMK-IHTGE 259

Query:   288 DAYVCNYCYDSFETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNLR----NHECTSCFT 341
               + C  C  SF  K  L  H   H G  P+ C  C   F    NL     NH     FT
Sbjct:   260 KPFTCTQCGKSFNCKPHLNQHTRIHSGEKPFTCTQCGKSFSQSSNLNLHMINHTGEKPFT 319

Query:   342 CPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTME 401
             C  C + +    HL  H+       P T        C  C R F +   L  H + HT +
Sbjct:   320 CTQCGKSFNFLSHLNLHMRIHTGEKPFT--------CTQCGRSFSHSSSLNRHMMRHTRD 371

Query:   402 KTFYRN 407
             K F  N
Sbjct:   372 KPFMSN 377

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MJE7 F1MJE7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 6.9e-44, P = 6.9e-44
 Identities = 123/411 (29%), Positives = 185/411 (45%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
             K Y CD C  AF +K  +  H QT H G   ++  +    F + S   R      K+   
Sbjct:   700 KPYKCDECGKAFRVKSILLSH-QTVHTGEKPYKCDECGKTFTHSSNLRR----HQKIHTG 754

Query:    64 HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
              +        +V    EQ    Q     E+ +KC+ C K+F  KS + RH    H  +K 
Sbjct:   755 QKLFKCDICDKVFSRSEQLAGHQSVHSGEKPYKCDECGKAFRVKSILLRHQTV-HTGEKP 813

Query:   124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCK 182
             YKC  C + + +  NL+ H K+H G K+F C  CDK FS   +L+ H   H      +C 
Sbjct:   814 YKCDECGKAFTHSSNLRRHQKIHTGQKLFKCDICDKVFSRSEHLAGHQSVHSGAKPYKCD 873

Query:   183 ICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCL 241
              C + F    +L  H   H   + +KC  C + FT  + +R H  + H  + LFKC  C 
Sbjct:   874 ECDKAFRVKSILLIHQTVHTGEKPYKCEECGKAFTHSSNLRRHQKI-HTGQKLFKCDICD 932

Query:   242 KVF--SDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF 299
             KVF  S+++  H    +  K Y+C EC K F  + I+ +H +  H  E  Y C+ C  +F
Sbjct:   933 KVFNRSEQLAGHQSVHSGEKPYKCDECGKAFRVKSILLRH-QTVHTGEKPYKCDECGKAF 991

Query:   300 ETKSTLVDH-FFHHGN-PYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKIEK 353
               KSTL+ H   H G  PY C+ C   F  +  L +H+        + C  C + ++++ 
Sbjct:   992 RVKSTLLRHQTVHTGEKPYKCDECGKAFRVKSMLLSHQTVHTGEKPYKCNECGKAFRVKA 1051

Query:   354 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
              L +H         T    +   KC  C + FR +  L +H+  HT EK +
Sbjct:  1052 ILFRH--------QTVHTGEKPYKCDECGKAFRVKSMLLSHQTVHTGEKPY 1094

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1LVU4 LOC100365915 "Protein LOC100365915" [Rattus norvegicus (taxid:10116)]

 Score = 465 (168.7 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 126/417 (30%), Positives = 181/417 (43%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAF-RNGSFYIRADIEQPKVKV 62
             K Y CD C  AF+ +  +  H Q  H G   +   +   +F + G F     I   +   
Sbjct:   283 KPYKCDECGKAFSQRTHLVQH-QRIHTGEKPYTCNECGKSFSQRGHFMEHQKIHTGEKPF 341

Query:    63 EHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSN-IRRHMAATHDLQ 121
             + E       R     Q Q+I   G    E+ +KC  C K+F+  S  IR HM   H  +
Sbjct:   342 KCEECEKTFTRSTHLTQHQKIHT-G----EKTYKCNECGKAFNGPSTFIRHHMI--HTGE 394

Query:   122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQ 180
             K Y+C  C + +    NL  H K H G K + CA+C KAFS  S+L++H++ H  E   +
Sbjct:   395 KPYECNECGKAFSQHSNLTQHQKTHTGEKPYDCAECGKAFSYWSSLAQHLKIHTGEKPYK 454

Query:   181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKK 239
             C  C + F     L +H + H   + F+C  C + F+  + +  H    H  E  ++CK+
Sbjct:   455 CSDCGKAFSYCSSLTQHRRIHTREKPFECSECGKAFSYLSNLNQH-QKTHTQEKAYECKE 513

Query:   240 CLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYD 297
             C K F        H R H   K Y+C EC K F+    + QH +  H  E  Y CN C  
Sbjct:   514 CGKAFIRSSSLAKHERIHTGEKPYQCLECGKTFSYGSSLIQH-KKIHTGERPYKCNECER 572

Query:   298 SFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKI 351
             +F  K  L  H   H G  PY C  C   F    +L  H+ T      + C  C++ +  
Sbjct:   573 AFNQKIHLTQHKRIHTGVKPYACPKCGKTFRHCSSLAQHQKTHTEGKHYQCNKCEKTFSQ 632

Query:   352 EKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV 408
             + HL +H +  +   P         KC  C R F     LT H+  HT EK +  NV
Sbjct:   633 KSHLTQHQQVHMGEKP--------YKCNDCDRCFTQSTHLTEHQSIHTGEKPYSSNV 681

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1MQS9 LOC100847180 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 466 (169.1 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 122/412 (29%), Positives = 182/412 (44%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIR-ADIEQPKVKV 62
             K Y CD C  AF +K ++  H QT H G  +++  +   A  + S   R   I   K   
Sbjct:   256 KPYKCDECGKAFRVKSNLLKH-QTVHTGEKRYKCDECGKALTHSSHLRRHKKIHTGKKLF 314

Query:    63 EHETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQK 122
             + +      +R  +    Q++  +     E+++KC  C ++F  KS +  H    H  +K
Sbjct:   315 KCDICEKVFKRNAKLAGHQRVHTR-----EKRYKCGECGEAFRLKSTLLSHQTV-HTGEK 368

Query:   123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQC 181
              YKC  C +++ +   L+ H K+H G K+F C  CDK FS  SNL+ H   H  E   +C
Sbjct:   369 PYKCDECGKVFTHSSQLRRHKKIHTGKKLFKCDICDKVFSKNSNLAGHQTVHTGEKPYKC 428

Query:   182 KICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKC 240
               C + F     L +H   H   + +KC  C + F+  + +R H  + H  + LFKC  C
Sbjct:   429 DECGKAFRVKSNLLQHQTVHTGEKPYKCDECGKAFSHSSHLRRHKKI-HTGKKLFKCDIC 487

Query:   241 LKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 298
              KVFS       H   H   K Y+C EC K F  +  +  H +  H  E  Y C  C ++
Sbjct:   488 DKVFSKNSNLAGHQTVHTGEKPYKCDECGKAFRVKSNLLSH-QTVHTGEKPYKCGECGEA 546

Query:   299 FETKSTLVDH-FFHHGN-PYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKIE 352
             F  KSTL+ H   H G  PY C  C   F  +  L +H+        + C  C + +   
Sbjct:   547 FRLKSTLLSHQTVHTGEKPYKCE-CGEAFRLKSTLLSHQTVHTGEKPYKCGECGKAFTHS 605

Query:   353 KHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
               L +H +  I         K L KC  C ++F     L  H+  HT EK +
Sbjct:   606 SQLRRHKK--IHTG------KKLFKCDICDKVFSRNSNLAGHQTVHTGEKPY 649

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9PBN9 ZNF425 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 463 (168.0 bits), Expect = 2.5e-43, P = 2.5e-43
 Identities = 118/412 (28%), Positives = 197/412 (47%)

Query:     4 KTYTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVE 63
             K + C  C  ++ LK S+  H +  HMG    Q     P   + +F  +A + +     +
Sbjct:   235 KRFQCGKCEKSYYLKCSLITHHRLVHMG----QRPLPCPEC-DKTFQCKATLRKHMCLHK 289

Query:    64 HETIMSYARRQVEYEQEQQIPAQGK-SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQK 122
              E + S  +   ++ ++ ++    +    E+ F+C  C +SF  +S+++ H+   H  +K
Sbjct:   290 REKLFSCEQCGKDFIEQCRLTKHLRVHTGEKPFQCPECNRSFRLQSSLKAHLCQ-HSGKK 348

Query:   123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQC 181
              + C  C R +  K  +KAH ++H G K F+C QC + F+ K+ L++H+R H  E   QC
Sbjct:   349 PFHCPECGRSFSQKAAVKAHQRIHSGEKPFSCDQCGRKFTHKTKLTEHIRVHTGEKPFQC 408

Query:   182 KICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKC 240
               C + F     L+ H+  H  ++ F+CP C+R F+ +  M+ H  + H++E  F C +C
Sbjct:   409 PECKKSFRLKRSLKAHLFQHSGKKPFQCPQCDRSFSWKNAMKAHQRL-HSEEKPFSCAEC 467

Query:   241 LKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDS 298
              K F+   K   HGR H+  K + C EC K F  +  + +H +  H KE  + C+ C  S
Sbjct:   468 GKRFTRPSKLARHGRVHSRQKEFSCGECTKTFPRQSRLTEHLK-VHTKEKPFSCSECSRS 526

Query:   299 FETKSTLVDHF-FHHGN-PYMCNHCFLMFPDEKNLRNHECTSC----FTCPFCQRKYKIE 352
             F   S L +H   H G  P+ C  C   F  + +++ H+ T      F C  C + Y  +
Sbjct:   527 FSRHSHLTEHRRLHSGEEPFQCPECDKSFFWKASMKFHQRTHSGERPFACSECGKTYTQQ 586

Query:   353 KHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF 404
               L +H    I         K  Q C  C + FR +  L +H L H+ +K F
Sbjct:   587 SQLTEHER--IHSGE-----KPFQ-CPECNKSFRLKGNLKSHLLQHSDKKPF 630

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	420
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	0.003

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 40/175 (22%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 187 IFEDDEVLEEHVKSHQNRRFKCP--CCERIFTSETRMRNHIDMKHADENLFKCKKCL--- 241
            +E ++V +E         FKCP   C R   S   ++ H   +H       C +C+   
Sbjct: 136 FYEGEDVRDE---MEDLLSFKCPKSKCHRRCGSLKELKKHYKAQH---GFVLCSECIGNK 189

Query: 242 KVFSDEIKFH------------LHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
           K F +EI+              L          C  C+  F  +D +R+H R  H  E  
Sbjct: 190 KDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH--EAC 247

Query: 290 YVCNYC----YDSFETKSTLVDHFFHHGNPYMCN------HCFLMFPDEKNLRNH 334
           ++C+      Y  F++   L  HF +    Y C           +FP    L  H
Sbjct: 248 HICDMVGPIRYQYFKSYEDLEAHFRN--AHYCCTFQTCRVGKCYVFPYHTELLEH 300

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
KOG3608|consensus	467		99.96
KOG1074|consensus	958		99.94
KOG1074|consensus	958		99.94
KOG3608|consensus	467		99.94
KOG2462|consensus	279		99.93
KOG2462|consensus	279		99.93
KOG3623|consensus	1007		99.86
KOG3623|consensus	1007		99.84
KOG3576|consensus	267		99.61
KOG3576|consensus	267		99.59
PLN03086	567	PRLI-interacting factor K; Provisional	99.18
PLN03086	567	PRLI-interacting factor K; Provisional	99.11
PHA02768	55	hypothetical protein; Provisional	99.03
PHA00733	128	hypothetical protein	99.0
PHA00733	128	hypothetical protein	98.96
PHA02768	55	hypothetical protein; Provisional	98.78
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.77
KOG3993|consensus	500		98.75
PHA00616	44	hypothetical protein	98.7
KOG3993|consensus	500		98.7
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.34
KOG1146|consensus	1406		98.29
PHA00732	79	hypothetical protein	98.18
PHA00616	44	hypothetical protein	98.16
PHA00732	79	hypothetical protein	98.16
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.06
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.02
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.95
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.64
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.63
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.58
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.49
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.44
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.39
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.29
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.26
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.16
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.12
smart00355	26	ZnF_C2H2 zinc finger.	97.02
PRK04860	160	hypothetical protein; Provisional	96.85
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.74
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.72
KOG2482|consensus	423		96.63
KOG2231|consensus	669		96.5
KOG2231|consensus	669		96.42
smart00355	26	ZnF_C2H2 zinc finger.	96.31
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.31
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.27
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.22
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.08
KOG1146|consensus	1406		95.99
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.8
KOG2482|consensus	423		95.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.23
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.23
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.08
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.51
PRK04860	160	hypothetical protein; Provisional	94.21
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.66
KOG2893|consensus	341		93.39
KOG2785|consensus	390		92.07
KOG4173|consensus	253		92.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.72
KOG2785|consensus	390		91.45
COG5048	467	FOG: Zn-finger [General function prediction only]	90.48
COG4049	65	Uncharacterized protein containing archaeal-type C	89.53
KOG4173|consensus	253		89.3
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	88.74
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	87.72
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	87.17
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.16
KOG2893|consensus	341		84.72
COG4049	65	Uncharacterized protein containing archaeal-type C	83.92
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	82.77
COG5048	467	FOG: Zn-finger [General function prediction only]	82.51
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	82.48
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.91
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	80.03

>KOG3608|consensus

Probab=99.96  E-value=1.8e-28  Score=209.27  Aligned_cols=221  Identities=24%  Similarity=0.594  Sum_probs=185.1

Q ss_pred             ccc--ccccccccChHHHHHHHHHhcC------------C--CCCc--chhhhccCCHHHHHHHHHhhC-CCccccCCCc
Q psy3231         152 FTC--AQCDKAFSLKSNLSKHVRHHME------------N--VKQC--KICLEIFEDDEVLEEHVKSHQ-NRRFKCPCCE  212 (420)
Q Consensus       152 ~~C--~~C~~~f~~~~~l~~H~~~h~~------------~--~~~C--~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~  212 (420)
                      |.|  ..|+..|.+...|..|+..|..            +  .+.|  ..|.+.+.++..|.+|++.|+ ++...|+.||
T Consensus       135 f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg  214 (467)
T KOG3608|consen  135 FRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCG  214 (467)
T ss_pred             hccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHH
Confidence            556  5799999999999999987752            1  2345  458999999999999999998 7889999999


Q ss_pred             cccCCHHHHHcccccc-CCCCCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHHhhcCCCCccc
Q psy3231         213 RIFTSETRMRNHIDMK-HADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYV  291 (420)
Q Consensus       213 ~~f~~~~~l~~H~~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  291 (420)
                      ..|.+...|.+|++.. -....+|.|..|.+.|.++..|..|+..|..-|+|++|+.+....+.|..|++..|..++||+
T Consensus       215 ~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfK  294 (467)
T KOG3608|consen  215 ELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFK  294 (467)
T ss_pred             HHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCcc
Confidence            9999999999998543 234568999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCCCcccccc--cccccCChhHHHHHHHHhhccCCcc
Q psy3231         292 CNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTT  369 (420)
Q Consensus       292 C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~  369 (420)
                      |+.|++.|.+.++|++|+..|..+                       .|.|..  |..++.+...|+.|++.++..+.. 
T Consensus       295 Cd~Cd~~c~~esdL~kH~~~HS~~-----------------------~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np-  350 (467)
T KOG3608|consen  295 CDECDTRCVRESDLAKHVQVHSKT-----------------------VYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNP-  350 (467)
T ss_pred             ccchhhhhccHHHHHHHHHhcccc-----------------------ceecCCCCCcHHHHHHHHHHHHHHHhccCCCC-
Confidence            999999999999999999988643                       245555  777777777888888775543332 


Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcC
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                          .+|.|..|++.|++..+|.+|++.-++
T Consensus       351 ----~~Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  351 ----ILYACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             ----CceeeecchhhhccchhHHHHHHHhhc
Confidence                368899999999999999999865444

>KOG1074|consensus

Probab=99.94  E-value=1.7e-28  Score=231.30  Aligned_cols=106  Identities=25%  Similarity=0.523  Sum_probs=83.5

Q ss_pred             ccccCCCccccCCHHHHHccccccCCCCCceecccccccccChHHHHHHhhccC------CCccCc---chhhcCCCHHH
Q psy3231         205 RFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA------KFYRCS---ECEKRFATEDI  275 (420)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------~~~~C~---~C~~~f~~~~~  275 (420)
                      |-+|-+|.++..-.+.|+.|. ..|++++||+|.+||+.|.++.+|+.|+.+|.      -++.|+   +|-+.|...-.
T Consensus       605 PNqCiiC~rVlSC~saLqmHy-rtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHY-RTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             ccceeeeeecccchhhhhhhh-hcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            356888888888888888888 45888888888888888888888888888885      358888   88888888888


Q ss_pred             HHHHHHhhcCC-CC------------ccccccchhccCChhHHHHHHhhC
Q psy3231         276 MRQHFRNYHNK-ED------------AYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       276 l~~H~~~~H~~-~~------------~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      |..|++. |.+ ..            .-+|..|.+.|.+...+..++..|
T Consensus       684 lpQhIri-H~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~  732 (958)
T KOG1074|consen  684 LPQHIRI-HLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQ  732 (958)
T ss_pred             ccceEEe-ecCCCCCCCcccccccchhcccchhhhcccccccchhhhhcc
Confidence            8888887 652 21            246888888888777777776544

>KOG1074|consensus

Probab=99.94  E-value=6.3e-28  Score=227.52  Aligned_cols=101  Identities=23%  Similarity=0.507  Sum_probs=85.8

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhCC------CcccCC---ccCCcCCCchh
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG------NPYMCN---HCFLMFPDEKN  330 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------~~~~C~---~C~~~f~~~~~  330 (420)
                      |-+|-+|.+...=++.|+.|+++ |+||+||+|.+||+.|.++.+|+.|+-+|.      .++.|+   +|-+.|.....
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrt-HtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRT-HTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhc-ccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            37899999999999999999998 999999999999999999999999999983      368999   99999999888


Q ss_pred             hhcccCC-----------------CcccccccccccCChhHHHHHHHH
Q psy3231         331 LRNHECT-----------------SCFTCPFCQRKYKIEKHLEKHIES  361 (420)
Q Consensus       331 l~~H~~~-----------------~~~~C~~C~~~f~~~~~l~~H~~~  361 (420)
                      |..|.+.                 ..-+|..|.+.|.....+..++..
T Consensus       684 lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se  731 (958)
T KOG1074|consen  684 LPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISE  731 (958)
T ss_pred             ccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhc
Confidence            8777543                 124688888888777777777654

>KOG3608|consensus

Probab=99.94  E-value=1.7e-26  Score=197.31  Aligned_cols=233  Identities=27%  Similarity=0.610  Sum_probs=202.6

Q ss_pred             Cccccc--cCccccCCHHHHHHHHHHhcCC------------C-Cccccc--cccccccCchHHHHHHhhccCCCccccc
Q psy3231          93 RKFKCE--MCPKSFDHKSNIRRHMAATHDL------------Q-KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus        93 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~------------~-~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      ..|.|.  .|+..|.+...+..|+. .|..            + ..+.|.  -|.+.+.+++.|++|++.|++++...|+
T Consensus       133 ~~f~C~WedCe~~F~s~~ef~dHV~-~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp  211 (467)
T KOG3608|consen  133 QNFRCGWEDCEREFVSIVEFQDHVV-KHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACP  211 (467)
T ss_pred             hhhccChhhcCCcccCHHHHHHHHH-HhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecc
Confidence            347885  69999999999999987 4521            1 235564  4899999999999999999999999999


Q ss_pred             cccccccChHHHHHHHHHhc---CCCCCcchhhhccCCHHHHHHHHHhhCCCccccCCCccccCCHHHHHccccccCCCC
Q psy3231         156 QCDKAFSLKSNLSKHVRHHM---ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADE  232 (420)
Q Consensus       156 ~C~~~f~~~~~l~~H~~~h~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  232 (420)
                      .||.-|.++..|..|++...   .++|.|..|.+.|.+...|..|+..|-+ -|+|+.|+.+....++|.+|++..|..+
T Consensus       212 ~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn-~ykCplCdmtc~~~ssL~~H~r~rHs~d  290 (467)
T KOG3608|consen  212 HCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN-CYKCPLCDMTCSSASSLTTHIRYRHSKD  290 (467)
T ss_pred             hHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-cccccccccCCCChHHHHHHHHhhhccC
Confidence            99999999999999998665   4599999999999999999999988754 5999999999999999999999999999


Q ss_pred             CceecccccccccChHHHHHHhhccC-CCccCcc--hhhcCCCHHHHHHHHHhhcCCC--CccccccchhccCChhHHHH
Q psy3231         233 NLFKCKKCLKVFSDEIKFHLHGRAHA-KFYRCSE--CEKRFATEDIMRQHFRNYHNKE--DAYVCNYCYDSFETKSTLVD  307 (420)
Q Consensus       233 ~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~--~~~~C~~C~~~f~~~~~l~~  307 (420)
                      +||+|+.|++.+.+.+.|..|..+|. ..|+|..  |...|.+...|++|++.+|.|.  .+|.|-.|++.|++-.+|..
T Consensus       291 kpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~  370 (467)
T KOG3608|consen  291 KPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSA  370 (467)
T ss_pred             CCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHH
Confidence            99999999999999999999999998 5699987  9999999999999999989655  56999999999999999999


Q ss_pred             HH-hhCC-------CcccCCccCCcCCC
Q psy3231         308 HF-FHHG-------NPYMCNHCFLMFPD  327 (420)
Q Consensus       308 H~-~~h~-------~~~~C~~C~~~f~~  327 (420)
                      |+ +.|+       ..|.=.+|...|..
T Consensus       371 HL~kkH~f~~PsGh~RFtYk~~edG~mR  398 (467)
T KOG3608|consen  371 HLMKKHGFRLPSGHKRFTYKVDEDGFMR  398 (467)
T ss_pred             HHHHhhcccCCCCCCceeeeeccCceee
Confidence            96 4553       23444555555533

>KOG2462|consensus

Probab=99.93  E-value=7e-27  Score=194.98  Aligned_cols=133  Identities=27%  Similarity=0.588  Sum_probs=115.4

Q ss_pred             CCccccCCCccccCCHHHHHccccccCC---CCCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHH
Q psy3231         203 NRRFKCPCCERIFTSETRMRNHIDMKHA---DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQH  279 (420)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H  279 (420)
                      ...|+|+.||+.+.+...|.+|.+. |.   ..+.+.|++|++.|.+...|..|+++|.-+.+|.+||+.|.....|+-|
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~-H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGH  206 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQT-HRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGH  206 (279)
T ss_pred             CCceeccccccccccccccchhhcc-cccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcc
Confidence            4568899999999999999999854 43   3567899999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCccccccchhccCChhHHHHHHhhCC--CcccCCccCCcCCCchhhhcccCC
Q psy3231         280 FRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG--NPYMCNHCFLMFPDEKNLRNHECT  337 (420)
Q Consensus       280 ~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~  337 (420)
                      +++ |+||+||.|+.|++.|.++++|+.||++|.  ++|+|..|+++|...+.|..|...
T Consensus       207 iRT-HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  207 IRT-HTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccc-ccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            998 999999999999999999999999999995  677766666666666666666533

>KOG2462|consensus

Probab=99.93  E-value=6.5e-27  Score=195.17  Aligned_cols=128  Identities=25%  Similarity=0.437  Sum_probs=90.7

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcC---CCCccccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhccc
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHN---KEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHE  335 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~  335 (420)
                      ..|+|+.||+.+.+...|.+|.++ |-   ..+.+.|++|++.|.+...|..|+++|+-|..|.+||+.|..+-.|    
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~-H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLL----  203 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQT-HRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLL----  203 (279)
T ss_pred             Cceeccccccccccccccchhhcc-cccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHh----
Confidence            457788888888888888888776 53   2456778888888888888888877777666666666655555444    


Q ss_pred             CCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcccccccceeeEEe
Q psy3231         336 CTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCL  415 (420)
Q Consensus       336 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~~~~  415 (420)
                                          .-|+|+        ++|++||.|+.|++.|.++++|+.||++|++.|+|.|..|+|+|++
T Consensus       204 --------------------QGHiRT--------HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl  255 (279)
T KOG2462|consen  204 --------------------QGHIRT--------HTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL  255 (279)
T ss_pred             --------------------hccccc--------ccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence                                444554        7777777777777777777777777777777777777777777776


Q ss_pred             eccc
Q psy3231         416 GMKT  419 (420)
Q Consensus       416 ~~~~  419 (420)
                      .++|
T Consensus       256 ~SyL  259 (279)
T KOG2462|consen  256 KSYL  259 (279)
T ss_pred             HHHH
Confidence            6665

>KOG3623|consensus

Probab=99.86  E-value=3.7e-22  Score=185.64  Aligned_cols=102  Identities=28%  Similarity=0.664  Sum_probs=88.4

Q ss_pred             cccccccccccCchHHHHHHhhc--cCCCccccccccccccChHHHHHHHHHhcC--------------CCCCcchhhhc
Q psy3231         124 YKCKLCARMYRYKWNLKAHLKMH--KGPKIFTCAQCDKAFSLKSNLSKHVRHHME--------------NVKQCKICLEI  187 (420)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------------~~~~C~~C~~~  187 (420)
                      ..|++|+..+.....|+.|++.-  ..+..|.|..|..+|..+..|.+|+..|..              +.|+|.+|++.
T Consensus       211 ltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKA  290 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKA  290 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchh
Confidence            67999999999999999998653  345679999999999999999999988742              25899999999


Q ss_pred             cCCHHHHHHHHHhhC-CCccccCCCccccCCHHHHHccc
Q psy3231         188 FEDDEVLEEHVKSHQ-NRRFKCPCCERIFTSETRMRNHI  225 (420)
Q Consensus       188 f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~  225 (420)
                      |.-+-.|++|+++|. ++||.|+.|++.|+....+..||
T Consensus       291 FKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm  329 (1007)
T KOG3623|consen  291 FKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM  329 (1007)
T ss_pred             hhhHHHHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence            999999999999998 89999999999999998888887

>KOG3623|consensus

Probab=99.84  E-value=1.9e-21  Score=180.97  Aligned_cols=107  Identities=35%  Similarity=0.805  Sum_probs=91.3

Q ss_pred             eecchhhHHHHhhhhhhhhhcccCCCCCCCCCCCCCcccccCcceeeeeccCCCccccceeehhhhhhhhhhhhhhhccC
Q psy3231           6 YTCDFCSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPA   85 (420)
Q Consensus         6 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (420)
                      ..|+.|+..+..-..|+.|++.+|...                                                     
T Consensus       211 ltcpycdrgykrltslkeHikyrhekn-----------------------------------------------------  237 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTSLKEHIKYRHEKN-----------------------------------------------------  237 (1007)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhhC-----------------------------------------------------
Confidence            468888888888888888888766443                                                     


Q ss_pred             CCCCccCCccccccCccccCCHHHHHHHHHHhcCC-------------CCccccccccccccCchHHHHHHhhccCCCcc
Q psy3231          86 QGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDL-------------QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIF  152 (420)
Q Consensus        86 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~-------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  152 (420)
                            +..|.|..|.++|..+..|.+||. .|..             .+.|+|+.|++.|+.+-.|++|+|+|.|++||
T Consensus       238 ------e~nfsC~lCsytFAyRtQLErhm~-~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPf  310 (1007)
T KOG3623|consen  238 ------EPNFSCMLCSYTFAYRTQLERHMQ-LHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPF  310 (1007)
T ss_pred             ------CCCCcchhhhhhhhhHHHHHHHHH-hhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCCCCc
Confidence                  123779999999999999999998 5532             25699999999999999999999999999999


Q ss_pred             ccccccccccChHHHHHHHH
Q psy3231         153 TCAQCDKAFSLKSNLSKHVR  172 (420)
Q Consensus       153 ~C~~C~~~f~~~~~l~~H~~  172 (420)
                      .|+.|+++|...+.+..||-
T Consensus       311 eCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  311 ECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             CCcccccccccCCccccccc
Confidence            99999999999999999974

>KOG3576|consensus

Probab=99.61  E-value=2.4e-16  Score=125.08  Aligned_cols=85  Identities=27%  Similarity=0.680  Sum_probs=79.4

Q ss_pred             ccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHH
Q psy3231          90 IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSK  169 (420)
Q Consensus        90 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  169 (420)
                      .+...|.|.+|++.|.-...|.+|++ .|...+.+.|..||+.|....+|++|+++|+|.+||+|..|++.|..+-.|..
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~k-ch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsles  191 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLK-CHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLES  191 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhh-hccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHH
Confidence            34567999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q psy3231         170 HVRHHM  175 (420)
Q Consensus       170 H~~~h~  175 (420)
                      |++.-+
T Consensus       192 hl~kvh  197 (267)
T KOG3576|consen  192 HLKKVH  197 (267)
T ss_pred             HHHHHc
Confidence            987544

>KOG3576|consensus

Probab=99.59  E-value=3.2e-16  Score=124.40  Aligned_cols=51  Identities=24%  Similarity=0.644  Sum_probs=26.3

Q ss_pred             ccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhC
Q psy3231         261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      |.|.+|++.|.....|.+|++- |++.+.+.|..||+.|.+..+|++|+++|
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kc-h~~vkr~lct~cgkgfndtfdlkrh~rth  168 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKC-HSDVKRHLCTFCGKGFNDTFDLKRHTRTH  168 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhh-ccHHHHHHHhhccCcccchhhhhhhhccc
Confidence            4455555555555555555543 55555555555555555555555555544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.18  E-value=3.9e-11  Score=113.84  Aligned_cols=60  Identities=22%  Similarity=0.476  Sum_probs=30.4

Q ss_pred             ecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhcc
Q psy3231         236 KCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSF  299 (420)
Q Consensus       236 ~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f  299 (420)
                      .|+.|++.|. ...|..|+..++.++.|+ ||+.+ .+..|..|+.+ |...+++.|+.|++.|
T Consensus       455 ~C~~Cgk~f~-~s~LekH~~~~Hkpv~Cp-Cg~~~-~R~~L~~H~~t-hCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        455 HCEKCGQAFQ-QGEMEKHMKVFHEPLQCP-CGVVL-EKEQMVQHQAS-TCPLRLITCRFCGDMV  514 (567)
T ss_pred             cCCCCCCccc-hHHHHHHHHhcCCCccCC-CCCCc-chhHHHhhhhc-cCCCCceeCCCCCCcc
Confidence            4555555553 344555555544555555 55433 33455555443 4555555555555555

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.11  E-value=8.7e-11  Score=111.54  Aligned_cols=132  Identities=21%  Similarity=0.376  Sum_probs=73.2

Q ss_pred             cCcchhhcCCCHHHHHHHHHhhcCCCCcccccc--chhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCC--
Q psy3231         262 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECT--  337 (420)
Q Consensus       262 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~--  337 (420)
                      .|+.|.+.... ..|..|...  -.-....|+.  |+..|. +..|..|       +.|+.|++.|. ...|..|+..  
T Consensus       409 ~C~NC~~~i~l-~~l~lHe~~--C~r~~V~Cp~~~Cg~v~~-r~el~~H-------~~C~~Cgk~f~-~s~LekH~~~~H  476 (567)
T PLN03086        409 ECRNCKHYIPS-RSIALHEAY--CSRHNVVCPHDGCGIVLR-VEEAKNH-------VHCEKCGQAFQ-QGEMEKHMKVFH  476 (567)
T ss_pred             ECCCCCCccch-hHHHHHHhh--CCCcceeCCcccccceee-ccccccC-------ccCCCCCCccc-hHHHHHHHHhcC
Confidence            45555544433 233355432  1122344553  555552 2233333       34666666654 3455555443  


Q ss_pred             CcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCC----------hhHHHHHHhhhcCCcccccc
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRN----------EDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~----------~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .++.|+ ||+.+ .+..|..|++.        +-+.+++.|++|++.|..          .+.|..|+..+ |.+++.|.
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~t--------hCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~  545 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQAS--------TCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCD  545 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhc--------cCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcc
Confidence            566666 66543 45667777664        555566777777777741          34677777775 67777777


Q ss_pred             cceeeEEee
Q psy3231         408 VATVSVCLG  416 (420)
Q Consensus       408 ~c~~~~~~~  416 (420)
                      .||+.|+..
T Consensus       546 ~Cgk~Vrlr  554 (567)
T PLN03086        546 SCGRSVMLK  554 (567)
T ss_pred             ccCCeeeeh
Confidence            777777654

>PHA02768 hypothetical protein; Provisional

Probab=99.03  E-value=1.3e-10  Score=73.17  Aligned_cols=42  Identities=10%  Similarity=0.173  Sum_probs=37.8

Q ss_pred             ccccccccccCChhHHHHHHhhhcCCcccccccceeeEEeeccc
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKT  419 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~~~~~~~~  419 (420)
                      |.|+.||+.|+..++|..||++|+  +||.|..|+++|.+.+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            789999999999999999999998  799999999999987765

>PHA00733 hypothetical protein

Probab=99.00  E-value=4.8e-10  Score=86.69  Aligned_cols=83  Identities=19%  Similarity=0.356  Sum_probs=46.0

Q ss_pred             CCccccCCCccccCCHHHHHcc--c--cccCCCCCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHH
Q psy3231         203 NRRFKCPCCERIFTSETRMRNH--I--DMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQ  278 (420)
Q Consensus       203 ~~~~~C~~C~~~f~~~~~l~~H--~--~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~  278 (420)
                      .+++.|.+|...|.+...|..+  +  -..+.++.+|.|+.|++.|.+...|..|++.+..+|.|+.|++.|.....|..
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~  117 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLD  117 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHH
Confidence            3445555555555444444333  0  01223355666666666666666666666655555666666666666666666


Q ss_pred             HHHhhcC
Q psy3231         279 HFRNYHN  285 (420)
Q Consensus       279 H~~~~H~  285 (420)
                      |+...|+
T Consensus       118 H~~~~h~  124 (128)
T PHA00733        118 HVCKKHN  124 (128)
T ss_pred             HHHHhcC
Confidence            6665554

>PHA00733 hypothetical protein

Probab=98.96  E-value=5.8e-10  Score=86.25  Aligned_cols=48  Identities=23%  Similarity=0.479  Sum_probs=23.0

Q ss_pred             CCccccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcc
Q psy3231         287 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNH  334 (420)
Q Consensus       287 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H  334 (420)
                      ++||.|+.|++.|.+...|..|++.|..+|.|++|++.|.....|..|
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H  118 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDH  118 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHH
Confidence            445555555555555555555555443334444444444444444333

>PHA02768 hypothetical protein; Provisional

Probab=98.78  E-value=3.2e-09  Score=66.92  Aligned_cols=42  Identities=14%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             cccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhh
Q psy3231         290 YVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNL  331 (420)
Q Consensus       290 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l  331 (420)
                      |.|+.||+.|...+.|..|+++|.+||+|..|++.|...+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcCCcccCCcccceeccccee
Confidence            455555555555555555555555555555555555544443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.77  E-value=4.1e-09  Score=56.75  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=23.6

Q ss_pred             HHHHHHhhhcCCcccccccceeeEE
Q psy3231         390 KLTAHELSHTMEKTFYRNVATVSVC  414 (420)
Q Consensus       390 ~l~~H~~~H~~~~~~~c~~c~~~~~  414 (420)
                      +|.+||++|+|++||.|++|+++|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            5899999999999999999999996

...

>KOG3993|consensus

Probab=98.75  E-value=3.5e-09  Score=94.21  Aligned_cols=25  Identities=24%  Similarity=0.671  Sum_probs=15.3

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhc
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYH  284 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H  284 (420)
                      .|.|..|++.|.....|+.|+.++|
T Consensus       356 i~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHHhhh
Confidence            4666666666666666666665544

>PHA00616 hypothetical protein

Probab=98.70  E-value=1.1e-08  Score=61.12  Aligned_cols=42  Identities=17%  Similarity=0.322  Sum_probs=38.9

Q ss_pred             cccccccccccCChhHHHHHHhhhcCCcccccccceeeEEee
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLG  416 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~~~~~  416 (420)
                      ||+|+.||+.|.++++|..|+++|+|++|+.|+.=-..|+++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f~v~   42 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYFRVR   42 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEEEee
Confidence            689999999999999999999999999999998888888765

>KOG3993|consensus

Probab=98.70  E-value=3.2e-09  Score=94.44  Aligned_cols=108  Identities=19%  Similarity=0.447  Sum_probs=63.6

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCcccc-cc-ccc-cccChHHHHHH
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC-AQ-CDK-AFSLKSNLSKH  170 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C-~~-C~~-~f~~~~~l~~H  170 (420)
                      .|.|..|...|.+.-.|.+|.- .-.....|+|+.|+++|.-..+|..|.+.|.....-.= .. =.+ ...+....+.-
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC-~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRC-PRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccC-CeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            4889999999999999988853 12222468899999999999999999888854211000 00 000 00111111111


Q ss_pred             HHH---hcCCCCCcchhhhccCCHHHHHHHHHhhC
Q psy3231         171 VRH---HMENVKQCKICLEIFEDDEVLEEHVKSHQ  202 (420)
Q Consensus       171 ~~~---h~~~~~~C~~C~~~f~~~~~l~~H~~~h~  202 (420)
                      .+.   -.+..|.|..|++.|.....|+.|+.+|+
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence            110   01225777777777777777777766665

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.34  E-value=2.5e-07  Score=49.74  Aligned_cols=26  Identities=42%  Similarity=0.912  Sum_probs=22.8

Q ss_pred             HHHHHHHhhcCCCCccccccchhccCC
Q psy3231         275 IMRQHFRNYHNKEDAYVCNYCYDSFET  301 (420)
Q Consensus       275 ~l~~H~~~~H~~~~~~~C~~C~~~f~~  301 (420)
                      +|.+|+++ |++++||.|++|+++|.+
T Consensus         1 ~l~~H~~~-H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRT-HTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH-HSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhh-cCCCCCCCCCCCcCeeCc
Confidence            48899997 999999999999999864

...

>KOG1146|consensus

Probab=98.29  E-value=6.1e-07  Score=91.40  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             ccCCccCCcCCCchhhhcccCC-CcccccccccccCChhHHHHHHHHhhccCCcccccc---------cccccccccccc
Q psy3231         316 YMCNHCFLMFPDEKNLRNHECT-SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLK---------TLQKCRYCQRMF  385 (420)
Q Consensus       316 ~~C~~C~~~f~~~~~l~~H~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~---------~~~~C~~C~~~f  385 (420)
                      +.|..|.+.|...-.+. |+.+ .+|.|..|.-.|.....|..|.+.+.........+.         ..| |.+|...|
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~ 1338 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLDVTHRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLL 1338 (1406)
T ss_pred             chhhhccccccCcccee-ecccchhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCcccccc-chHHHhhc
Confidence            44555555555444444 4433 669999999999999999999876433322211111         345 99999999


Q ss_pred             CChhHHHHHHhhh
Q psy3231         386 RNEDKLTAHELSH  398 (420)
Q Consensus       386 ~~~~~l~~H~~~H  398 (420)
                      ....+|+.||++-
T Consensus      1339 ~~~~alqihm~~~ 1351 (1406)
T KOG1146|consen 1339 SGREALQIHMRSS 1351 (1406)
T ss_pred             chhHHHHHHHHHh
Confidence            9999999999953

>PHA00732 hypothetical protein

Probab=98.18  E-value=1.3e-06  Score=61.08  Aligned_cols=47  Identities=28%  Similarity=0.595  Sum_probs=27.6

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      ||.|+.|++.|.+...|..|++..|.+   +.|+.|++.|.   .|..|++..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhccc
Confidence            456666666666666666666533432   45666666665   355565544

>PHA00616 hypothetical protein

Probab=98.16  E-value=1.1e-06  Score=52.73  Aligned_cols=34  Identities=21%  Similarity=0.531  Sum_probs=28.6

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCCCcccccc
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY  294 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  294 (420)
                      ||+|+.||+.|...+.|.+|++. |.+++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCCCccceeE
Confidence            58899999999999999999987 66778888765

>PHA00732 hypothetical protein

Probab=98.16  E-value=1.3e-06  Score=60.98  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=32.4

Q ss_pred             ccccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCC
Q psy3231         289 AYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECT  337 (420)
Q Consensus       289 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~  337 (420)
                      ||.|+.|++.|.+...|..|++.+..++.|++||+.|.   .|..|..+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhhcc
Confidence            57788888888888888888874323467777777776   46666544

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.06  E-value=5.9e-06  Score=53.55  Aligned_cols=50  Identities=24%  Similarity=0.501  Sum_probs=39.6

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCC-CccccccchhccCChhHHHHHHhhC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKE-DAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~-~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      .|.||+|++ ..+...|..|+...|..+ +.+.|++|...+.  .+|..|+..+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            488999999 566788999998888875 5699999998655  4888887653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.02  E-value=9.4e-06  Score=52.59  Aligned_cols=51  Identities=27%  Similarity=0.472  Sum_probs=39.8

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcCCC-CccccccccccccCchHHHHHHhhcc
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHDLQ-KKYKCKLCARMYRYKWNLKAHLKMHK  147 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (420)
                      .|.|+.|++ ..+...|..|....|..+ +.+.|++|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            488999999 566788999988888764 5688999987654  48888887665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=4.3e-06  Score=43.63  Aligned_cols=23  Identities=30%  Similarity=0.645  Sum_probs=15.9

Q ss_pred             ccccccccccCChhHHHHHHhhh
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSH  398 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H  398 (420)
                      |.|+.|++.|.+..+|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            45777777777777777777654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.64  E-value=3e-05  Score=40.83  Aligned_cols=24  Identities=29%  Similarity=0.677  Sum_probs=15.9

Q ss_pred             ccccccccccCChhHHHHHHhhhc
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      |.|++|++.|.+..+|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            467777777777777777777653

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.63  E-value=2.3e-05  Score=40.81  Aligned_cols=22  Identities=32%  Similarity=0.931  Sum_probs=11.0

Q ss_pred             ccCcchhhcCCCHHHHHHHHHh
Q psy3231         261 YRCSECEKRFATEDIMRQHFRN  282 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~  282 (420)
                      |+|++|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455555555555555555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.58  E-value=3.5e-05  Score=41.94  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             cccccccccccCChhHHHHHHhhhcC
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ||.|..|++.|.+..+|..|++.|.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57788888888888888888887753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.49  E-value=6.8e-05  Score=55.99  Aligned_cols=73  Identities=23%  Similarity=0.480  Sum_probs=19.2

Q ss_pred             ccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHh
Q psy3231          96 KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH  174 (420)
Q Consensus        96 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  174 (420)
                      +|..|+..|.+...|..||...|....+     ....+.....+..+++... ...+.|..|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccc-----ccccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            4888999999999999998877754322     1111223333444443322 22588888888888888888888754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.44  E-value=6.7e-05  Score=56.02  Aligned_cols=71  Identities=24%  Similarity=0.484  Sum_probs=12.9

Q ss_pred             ccCCCccccCCHHHHHccccccCCCCCceecccccccccChHHHHHHhhccC-CCccCcchhhcCCCHHHHHHHHHh
Q psy3231         207 KCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA-KFYRCSECEKRFATEDIMRQHFRN  282 (420)
Q Consensus       207 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~C~~C~~~f~~~~~l~~H~~~  282 (420)
                      +|..|+..|.+...|..|+...|.-..+     ....+.....+..+.+... ..+.|.+|++.|.+...|..|++.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             Cccccccccccccccccccccccccccc-----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            3667777777777777777555543322     0111112222222222111 235555555555555555555554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.39  E-value=0.0001  Score=38.68  Aligned_cols=23  Identities=35%  Similarity=0.829  Sum_probs=11.7

Q ss_pred             ccCcchhhcCCCHHHHHHHHHhh
Q psy3231         261 YRCSECEKRFATEDIMRQHFRNY  283 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~~  283 (420)
                      |.|++|++.|.+...|..|+.+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555555543

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.29  E-value=6.6e-05  Score=64.91  Aligned_cols=51  Identities=25%  Similarity=0.625  Sum_probs=38.7

Q ss_pred             CCccCcc--hhhcCCCHHHHHHHHHhhcC------------------CCCccccccchhccCChhHHHHHH
Q psy3231         259 KFYRCSE--CEKRFATEDIMRQHFRNYHN------------------KEDAYVCNYCYDSFETKSTLVDHF  309 (420)
Q Consensus       259 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~------------------~~~~~~C~~C~~~f~~~~~l~~H~  309 (420)
                      +||+|++  |.+.+.....|+.|+.--|.                  .++||+|++|++++++...|+.|.
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            8999987  99999999999999875552                  235677777777777666666664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.26  E-value=6.2e-05  Score=65.08  Aligned_cols=72  Identities=18%  Similarity=0.468  Sum_probs=49.0

Q ss_pred             cccceecch--hhHHHHhhhhhhhhhcccCCCCCCCCCCCCCcccccCcceeeeeccCCCccccceeehhhhhhhhhhhh
Q psy3231           2 TLKTYTCDF--CSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQ   79 (420)
Q Consensus         2 ~~k~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (420)
                      +.|||+|++  |+|++.+...|..|+..=|....-    .+.+.                                    
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~----~~~p~------------------------------------  385 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKL----HENPS------------------------------------  385 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCccc----CCCCC------------------------------------
Confidence            359999998  999999999999997643322200    00000                                    


Q ss_pred             hhhccCCCCCccCCccccccCccccCCHHHHHHHHH
Q psy3231          80 EQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                        ..+.+.-....|||+|++|++.+.....|+-|..
T Consensus       386 --p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         386 --PEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             --ccccccccccCCceeccccchhhccCccceeccc
Confidence              0001111446789999999999999999988864

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.16  E-value=0.00021  Score=38.76  Aligned_cols=24  Identities=29%  Similarity=0.603  Sum_probs=16.2

Q ss_pred             ccccccchhccCChhHHHHHHhhC
Q psy3231         289 AYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       289 ~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      ||.|..|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            466777777777777777776655

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.12  E-value=0.00025  Score=37.21  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=17.5

Q ss_pred             ccccccccccCChhHHHHHHhhhcC
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      |+|+.|+++.. ...|..|++.|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888888887 8888888887653

>smart00355 ZnF_C2H2 zinc finger

Probab=97.02  E-value=0.00055  Score=36.51  Aligned_cols=24  Identities=25%  Similarity=0.631  Sum_probs=18.2

Q ss_pred             ccccccccccCChhHHHHHHhhhc
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      |.|..|+++|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            467788888888888888877664

>PRK04860 hypothetical protein; Provisional

Probab=96.85  E-value=0.00078  Score=54.23  Aligned_cols=41  Identities=12%  Similarity=0.207  Sum_probs=36.2

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCcccccccceeeEEeecc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMK  418 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~~~~~~~  418 (420)
                      -+|.|. |+.   ....+++|.++|+|+++|.|..|+..|.....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~~  158 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKGE  158 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEecc
Confidence            479998 998   88889999999999999999999999987654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.74  E-value=0.00078  Score=35.70  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=17.2

Q ss_pred             ccccccccccCChhHHHHHHhhh
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSH  398 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H  398 (420)
                      |.|..|++.|.+..+|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            46778888888888888887654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.72  E-value=0.0016  Score=40.03  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             ccccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         372 LKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       372 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      .+.|-.|+.|+..+.+..+|++|+.++++.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34566788888888888888888888777776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2482|consensus

Probab=96.63  E-value=0.0033  Score=55.31  Aligned_cols=156  Identities=19%  Similarity=0.305  Sum_probs=98.2

Q ss_pred             hHHHHHHhhccC---CCccCcchhhcC-CCHHHHHHHHHhhcCC---------------------CCccccccchhccCC
Q psy3231         247 EIKFHLHGRAHA---KFYRCSECEKRF-ATEDIMRQHFRNYHNK---------------------EDAYVCNYCYDSFET  301 (420)
Q Consensus       247 ~~~l~~H~~~h~---~~~~C~~C~~~f-~~~~~l~~H~~~~H~~---------------------~~~~~C~~C~~~f~~  301 (420)
                      ...|..+++.-.   ...+|-.|...+ ..++....|+...|.-                     -..+.|-.|.+.|.+
T Consensus       128 ~eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrd  207 (423)
T KOG2482|consen  128 KEALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRD  207 (423)
T ss_pred             HHHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCC
Confidence            345666655443   457899998765 5677888898877741                     123899999999999


Q ss_pred             hhHHHHHHhhCC----Cc--------cc--CCccCCcCCC-chhh-----hcccCC------------Cc--cccccccc
Q psy3231         302 KSTLVDHFFHHG----NP--------YM--CNHCFLMFPD-EKNL-----RNHECT------------SC--FTCPFCQR  347 (420)
Q Consensus       302 ~~~l~~H~~~h~----~~--------~~--C~~C~~~f~~-~~~l-----~~H~~~------------~~--~~C~~C~~  347 (420)
                      +..|+.||+.-+    +|        |.  =..=|++... .+.+     ..+..+            .+  ..|-+|..
T Consensus       208 kntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~  287 (423)
T KOG2482|consen  208 KNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTN  287 (423)
T ss_pred             cHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeecc
Confidence            999999996531    22        00  0011221110 0111     111100            22  58999999


Q ss_pred             ccCChhHHHHHHHHhhccCCcccccc-------------------ccccccccccccCChhHHHHHHh--hhcCCc
Q psy3231         348 KYKIEKHLEKHIESCIQLNPTTTVLK-------------------TLQKCRYCQRMFRNEDKLTAHEL--SHTMEK  402 (420)
Q Consensus       348 ~f~~~~~l~~H~~~~~~~~~~~~~~~-------------------~~~~C~~C~~~f~~~~~l~~H~~--~H~~~~  402 (420)
                      .......|..||+..+.-+-.-.+..                   ..-.|..|+-+|-....|..||.  .|++.-
T Consensus       288 ~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k~l~i~  363 (423)
T KOG2482|consen  288 FYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDKHLSIL  363 (423)
T ss_pred             chhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccccccccc
Confidence            99999999999998443211100110                   23369999999999999999996  555533

>KOG2231|consensus

Probab=96.50  E-value=0.005  Score=60.29  Aligned_cols=69  Identities=25%  Similarity=0.562  Sum_probs=47.6

Q ss_pred             cccccCccccCCHHHHHHHHHHhcCCCCcccccccc------ccccCchHHHHHHhhccCCCccccc--ccc-ccccChH
Q psy3231          95 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCA------RMYRYKWNLKAHLKMHKGPKIFTCA--QCD-KAFSLKS  165 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~------~~f~~~~~l~~H~~~h~~~~~~~C~--~C~-~~f~~~~  165 (420)
                      -.|..|...|-....|..|++..|     |.|.+|+      ..|....+|..|.+..+    |.|.  .|. +.|....
T Consensus       183 p~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~  253 (669)
T KOG2231|consen  183 PLCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAF  253 (669)
T ss_pred             ccchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccceeeehh
Confidence            468899999999999999988655     5666663      45667778888888765    6776  563 3343333


Q ss_pred             HHHHHHH
Q psy3231         166 NLSKHVR  172 (420)
Q Consensus       166 ~l~~H~~  172 (420)
                      .+..+++
T Consensus       254 ~~ei~lk  260 (669)
T KOG2231|consen  254 ELEIELK  260 (669)
T ss_pred             HHHHHHH
Confidence            4555554

>KOG2231|consensus

Probab=96.42  E-value=0.0055  Score=60.02  Aligned_cols=113  Identities=24%  Similarity=0.519  Sum_probs=79.3

Q ss_pred             eecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccch---------hccCChhHH
Q psy3231         235 FKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCY---------DSFETKSTL  305 (420)
Q Consensus       235 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~---------~~f~~~~~l  305 (420)
                      +.|.+|+..|....          ..-.|..| -.|.+...|+.|+...|..   +.|.+|-         ....+..+|
T Consensus       100 ~~C~~C~~~~~~~~----------~~~~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el  165 (669)
T KOG2231|consen  100 HSCHICDRRFRALY----------NKKECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAEL  165 (669)
T ss_pred             hhcCccccchhhhc----------ccCCCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHH
Confidence            56777777663211          11357777 6777888899998777753   4454442         233456778


Q ss_pred             HHHHhhC-------CCcccCCccCCcCCCchhhhcccCCCcccccccc------cccCChhHHHHHHHH
Q psy3231         306 VDHFFHH-------GNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQ------RKYKIEKHLEKHIES  361 (420)
Q Consensus       306 ~~H~~~h-------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~C~~C~------~~f~~~~~l~~H~~~  361 (420)
                      ..|+..-       .+--.|..|...|.....|..|++...|.|.+|.      ..|.....|+.|.+.
T Consensus       166 ~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~  234 (669)
T KOG2231|consen  166 NLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRK  234 (669)
T ss_pred             HHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhh
Confidence            8887543       1235699999999999999999988888888884      456778889999886

>smart00355 ZnF_C2H2 zinc finger

Probab=96.31  E-value=0.0026  Score=33.80  Aligned_cols=23  Identities=39%  Similarity=0.746  Sum_probs=13.3

Q ss_pred             cccccchhccCChhHHHHHHhhC
Q psy3231         290 YVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       290 ~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      |.|+.|++.|.+...|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34556666666666666665544

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.31  E-value=0.0066  Score=53.53  Aligned_cols=125  Identities=25%  Similarity=0.481  Sum_probs=81.0

Q ss_pred             CCcch--hhhccCCHHHHHHHHHhhCCCccccCCCc---------cccCCHHHHHccccccCCCC----Cceeccccccc
Q psy3231         179 KQCKI--CLEIFEDDEVLEEHVKSHQNRRFKCPCCE---------RIFTSETRMRNHIDMKHADE----NLFKCKKCLKV  243 (420)
Q Consensus       179 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~C~---------~~f~~~~~l~~H~~~~h~~~----~~~~C~~C~~~  243 (420)
                      |.|+.  |.........|..|.+..+.+ +-|.+|-         -..-+...|+.|... -..+    .--.|..|...
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~-~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~-G~~e~GFKGHP~C~FC~~~  229 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF-VLCSECIGNKKDFWNEIRLFRSSTLRDHKNG-GLEEEGFKGHPLCIFCKIY  229 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc-EEhHhhhcCcccCccceeeeecccccccccC-CccccCcCCCchhhhccce
Confidence            45543  455555556666666655433 3355442         123345677888632 2222    12369999999


Q ss_pred             ccChHHHHHHhhccCCCccCcchhh-------cCCCHHHHHHHHHhhcCCCCcccccc--ch----hccCChhHHHHHH-
Q psy3231         244 FSDEIKFHLHGRAHAKFYRCSECEK-------RFATEDIMRQHFRNYHNKEDAYVCNY--CY----DSFETKSTLVDHF-  309 (420)
Q Consensus       244 f~~~~~l~~H~~~h~~~~~C~~C~~-------~f~~~~~l~~H~~~~H~~~~~~~C~~--C~----~~f~~~~~l~~H~-  309 (420)
                      |.+...|..|++..+  -.|-+|++       -|.+...|..|.+..|     |.|.+  |-    ..|.....|+.|+ 
T Consensus       230 FYdDDEL~~HcR~~H--E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-----y~ct~qtc~~~k~~vf~~~~el~~h~~  302 (493)
T COG5236         230 FYDDDELRRHCRLRH--EACHICDMVGPIRYQYFKSYEDLEAHFRNAH-----YCCTFQTCRVGKCYVFPYHTELLEHLT  302 (493)
T ss_pred             ecChHHHHHHHHhhh--hhhhhhhccCccchhhhhCHHHHHHHhhcCc-----eEEEEEEEecCcEEEeccHHHHHHHHH
Confidence            999999999998654  24555554       4788999999988766     67755  43    5789999999996 


Q ss_pred             hhC
Q psy3231         310 FHH  312 (420)
Q Consensus       310 ~~h  312 (420)
                      +-|
T Consensus       303 ~~h  305 (493)
T COG5236         303 RFH  305 (493)
T ss_pred             HHh
Confidence            455

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.27  E-value=0.0015  Score=35.38  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=18.1

Q ss_pred             ccccccccccCChhHHHHHHhh
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      |.|..|++.|.+..+|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.22  E-value=0.0022  Score=39.44  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=7.5

Q ss_pred             ccccccccccccCchHHHHHHhh
Q psy3231         123 KYKCKLCARMYRYKWNLKAHLKM  145 (420)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~  145 (420)
                      |-.|++|+..+....+|++|+..
T Consensus        24 PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHH
T ss_pred             CCCCCcchhhccchhhHHHHHHH
Confidence            33344444444444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.08  E-value=0.0028  Score=33.51  Aligned_cols=21  Identities=29%  Similarity=0.790  Sum_probs=11.6

Q ss_pred             cccccchhccCChhHHHHHHh
Q psy3231         290 YVCNYCYDSFETKSTLVDHFF  310 (420)
Q Consensus       290 ~~C~~C~~~f~~~~~l~~H~~  310 (420)
                      |.|.+|+..|.+...|..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            345555555555555555554

>KOG1146|consensus

Probab=95.99  E-value=0.0027  Score=65.92  Aligned_cols=146  Identities=16%  Similarity=0.210  Sum_probs=98.8

Q ss_pred             CcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhh-CCCcccCCccCCcCCCchhhhcccC-----
Q psy3231         263 CSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFH-HGNPYMCNHCFLMFPDEKNLRNHEC-----  336 (420)
Q Consensus       263 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~C~~C~~~f~~~~~l~~H~~-----  336 (420)
                      |.-++..+.+...+..|+...|.-.+.++|+.|+..|+....|..|+|. |-..-. .+|.       ..+.|.+     
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~-~~c~-------~gq~~~~~arg~  510 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS-AYCK-------AGQNHPRLARGE  510 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch-hHhH-------hccccccccccc
Confidence            4455666667777777777777778889999999999999999999876 311100 2221       1122221     


Q ss_pred             -----CCcccccccccccCChhHHHHHHHHhhccCC------------------------c----------c-ccccccc
Q psy3231         337 -----TSCFTCPFCQRKYKIEKHLEKHIESCIQLNP------------------------T----------T-TVLKTLQ  376 (420)
Q Consensus       337 -----~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~------------------------~----------~-~~~~~~~  376 (420)
                           .++|.|..|..+++...+|.+|+........                        .          + ...+..+
T Consensus       511 ~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~  590 (1406)
T KOG1146|consen  511 VYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSW  590 (1406)
T ss_pred             cccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCc
Confidence                 1789999999999999999999976111000                        0          0 1111457


Q ss_pred             cccccccccCChhHHHHHHh-hhcCCcccccccceeeEEee
Q psy3231         377 KCRYCQRMFRNEDKLTAHEL-SHTMEKTFYRNVATVSVCLG  416 (420)
Q Consensus       377 ~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~c~~c~~~~~~~  416 (420)
                      .|..|++.-+-.-+|+.||. .++..-|--+-.++..+..-
T Consensus       591 ~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~  631 (1406)
T KOG1146|consen  591 RCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLA  631 (1406)
T ss_pred             chhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhcc
Confidence            99999999999999999997 45544446666666655443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.80  E-value=0.008  Score=31.37  Aligned_cols=23  Identities=43%  Similarity=0.886  Sum_probs=12.4

Q ss_pred             cccccCccccCCHHHHHHHHHHhc
Q psy3231          95 FKCEMCPKSFDHKSNIRRHMAATH  118 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~~~~h  118 (420)
                      |+|+.|++... ...|.+|++..|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666666665 666666665443

>KOG2482|consensus

Probab=95.33  E-value=0.044  Score=48.52  Aligned_cols=23  Identities=35%  Similarity=0.727  Sum_probs=16.6

Q ss_pred             ccccccccccccChHHHHHHHHH
Q psy3231         151 IFTCAQCDKAFSLKSNLSKHVRH  173 (420)
Q Consensus       151 ~~~C~~C~~~f~~~~~l~~H~~~  173 (420)
                      .+.|-.|.+.|.++..|+.||+.
T Consensus       195 r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHh
Confidence            36777777777777777777753

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.23  E-value=0.046  Score=48.42  Aligned_cols=135  Identities=17%  Similarity=0.365  Sum_probs=74.3

Q ss_pred             ceecch--hhHHHHhhhhhhhhhcccCCCCCCCCCCCCCcccccC---cceeeeeccCCCccccceeehhhhhhhhhhhh
Q psy3231           5 TYTCDF--CSAAFALKHSIADHIQTEHMGNPKHQDTKQYPAFRNG---SFYIRADIEQPKVKVEHETIMSYARRQVEYEQ   79 (420)
Q Consensus         5 ~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (420)
                      .|.|+.  |..+......|..|.+..|..         +.|..|-   +.|..             ++  ..|.+.....
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~---------~~C~~C~~nKk~F~~-------------E~--~lF~~~~Lr~  206 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF---------VLCSECIGNKKDFWN-------------EI--RLFRSSTLRD  206 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc---------EEhHhhhcCcccCcc-------------ce--eeeecccccc
Confidence            477775  777777788899999887743         3444442   11111             10  0111111112


Q ss_pred             hhhccCCCCCccCCccccccCccccCCHHHHHHHHHHhcCCCCcccccccccc-------ccCchHHHHHHhhccCCCcc
Q psy3231          80 EQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARM-------YRYKWNLKAHLKMHKGPKIF  152 (420)
Q Consensus        80 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~-------f~~~~~l~~H~~~h~~~~~~  152 (420)
                      |.....++... ..--.|..|...|.+-..|..|++..|.     .|.+|+++       |++..+|..|.+.-    -|
T Consensus       207 H~~~G~~e~GF-KGHP~C~FC~~~FYdDDEL~~HcR~~HE-----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~----hy  276 (493)
T COG5236         207 HKNGGLEEEGF-KGHPLCIFCKIYFYDDDELRRHCRLRHE-----ACHICDMVGPIRYQYFKSYEDLEAHFRNA----HY  276 (493)
T ss_pred             cccCCccccCc-CCCchhhhccceecChHHHHHHHHhhhh-----hhhhhhccCccchhhhhCHHHHHHHhhcC----ce
Confidence            22211111111 1123699999999999999999986664     57777654       45555666666532    24


Q ss_pred             cccc--cc----ccccChHHHHHHHHH
Q psy3231         153 TCAQ--CD----KAFSLKSNLSKHVRH  173 (420)
Q Consensus       153 ~C~~--C~----~~f~~~~~l~~H~~~  173 (420)
                      .|.+  |.    ..|.....|..|+..
T Consensus       277 ~ct~qtc~~~k~~vf~~~~el~~h~~~  303 (493)
T COG5236         277 CCTFQTCRVGKCYVFPYHTELLEHLTR  303 (493)
T ss_pred             EEEEEEEecCcEEEeccHHHHHHHHHH
Confidence            4532  32    356666677777543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.23  E-value=0.016  Score=30.55  Aligned_cols=20  Identities=45%  Similarity=0.916  Sum_probs=14.3

Q ss_pred             cccccccccCChhHHHHHHHH
Q psy3231         341 TCPFCQRKYKIEKHLEKHIES  361 (420)
Q Consensus       341 ~C~~C~~~f~~~~~l~~H~~~  361 (420)
                      .|++||++| ..+.|..|+..
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHh
Confidence            577777777 56777777765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.08  E-value=0.0089  Score=32.25  Aligned_cols=17  Identities=35%  Similarity=0.862  Sum_probs=6.2

Q ss_pred             CCccCCcCCCchhhhcc
Q psy3231         318 CNHCFLMFPDEKNLRNH  334 (420)
Q Consensus       318 C~~C~~~f~~~~~l~~H  334 (420)
                      |..|++.|.+...|..|
T Consensus         4 C~~C~k~f~~~~~~~~H   20 (27)
T PF12171_consen    4 CDACDKYFSSENQLKQH   20 (27)
T ss_dssp             BTTTTBBBSSHHHHHCC
T ss_pred             cccCCCCcCCHHHHHHH
Confidence            33333333333333333

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.51  E-value=0.03  Score=29.51  Aligned_cols=21  Identities=43%  Similarity=0.770  Sum_probs=18.4

Q ss_pred             ccccccccccCChhHHHHHHhh
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      ..|+.||++| ..++|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 88999999864

>PRK04860 hypothetical protein; Provisional

Probab=94.21  E-value=0.022  Score=45.94  Aligned_cols=37  Identities=22%  Similarity=0.809  Sum_probs=25.7

Q ss_pred             ccccccccccccCchHHHHHHhhccCCCccccccccccccC
Q psy3231         123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSL  163 (420)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~  163 (420)
                      +|.|. |+.   ....+.+|.++|.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            46776 766   55667777777777777777777766653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.66  E-value=0.046  Score=31.47  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=18.6

Q ss_pred             cccccccccccCChhHHHHHHh
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHEL  396 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~  396 (420)
                      +|.|.+|+..|.+..++..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4778999999998888888886

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=93.39  E-value=0.025  Score=47.22  Aligned_cols=46  Identities=28%  Similarity=0.568  Sum_probs=35.9

Q ss_pred             cCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHH-HhhC
Q psy3231         262 RCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH-FFHH  312 (420)
Q Consensus       262 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H-~~~h  312 (420)
                      .|.+|++.|.....|.+|++..|     |+|.+|.+..-+--.|..| +.+|
T Consensus        12 wcwycnrefddekiliqhqkakh-----fkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH-----FKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc-----ceeeeehhhhccCCCceeehhhhh
Confidence            58888888988888888877655     8899998887777777777 4444

>KOG2785|consensus

Probab=92.07  E-value=0.3  Score=44.33  Aligned_cols=23  Identities=30%  Similarity=0.706  Sum_probs=20.1

Q ss_pred             ccccccCccccCCHHHHHHHHHH
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAA  116 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~  116 (420)
                      .|.|..|...|.+....+.|++.
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKS   25 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKS   25 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhh
Confidence            48999999999999999999863

>KOG4173|consensus

Probab=92.00  E-value=0.12  Score=42.29  Aligned_cols=52  Identities=31%  Similarity=0.686  Sum_probs=37.8

Q ss_pred             cCcchhhcCCCHHHHHHHHHhhcC---------CCCcccccc--chhccCChhHHHHHH-hhCC
Q psy3231         262 RCSECEKRFATEDIMRQHFRNYHN---------KEDAYVCNY--CYDSFETKSTLVDHF-FHHG  313 (420)
Q Consensus       262 ~C~~C~~~f~~~~~l~~H~~~~H~---------~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~  313 (420)
                      .|..|.+.|++...|..|+...|.         |...|.|-+  |+..|.+...-..|+ +.|.
T Consensus       108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            577777777777777777766663         456788855  888888888888885 5563

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.72  E-value=0.12  Score=29.76  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=17.3

Q ss_pred             cccccccccccCChhHHHHHHHH
Q psy3231         339 CFTCPFCQRKYKIEKHLEKHIES  361 (420)
Q Consensus       339 ~~~C~~C~~~f~~~~~l~~H~~~  361 (420)
                      +|.|++|+..|.+...+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46788888888877788887754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785|consensus

Probab=91.45  E-value=0.41  Score=43.52  Aligned_cols=53  Identities=17%  Similarity=0.349  Sum_probs=39.4

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCC----------------------CCccccccch---hccCChhHHHHHHhh
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNK----------------------EDAYVCNYCY---DSFETKSTLVDHFFH  311 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~  311 (420)
                      .|-.|-.|++.+.+-..-..||...|+-                      ..-|.|-.|+   +.|.+....+.||..
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            3567888888888888888888876642                      1237788888   888888888888753

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.48  E-value=0.058  Score=52.05  Aligned_cols=148  Identities=19%  Similarity=0.282  Sum_probs=101.2

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHh-hcCCC--Cccccc--cchhccCChhHHHHHHhhCC--CcccCCc--cCCcCCCch
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRN-YHNKE--DAYVCN--YCYDSFETKSTLVDHFFHHG--NPYMCNH--CFLMFPDEK  329 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~-~H~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~--~~~~C~~--C~~~f~~~~  329 (420)
                      .++.|..|...|.....|..|.+. .|.++  +++.|+  .|++.|.....+..|...|.  .++.+..  +...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            368999999999999999999994 59999  999999  79999999999999998884  3444433  333333322


Q ss_pred             hhhccc------C---CCcccccc--cccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhh
Q psy3231         330 NLRNHE------C---TSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH  398 (420)
Q Consensus       330 ~l~~H~------~---~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H  398 (420)
                      .-..+.      .   ...+.+..  |-..+.....+..|...+.      ......+.+..|.+.|.....+..|++.|
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHL------SFRPYNCKNPPCSKSFNRHYNLIPHKKIH  441 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhcccccccccccccc------ccCCcCCCCCcchhhccCccccccccccc
Confidence            211111      0   02333332  5555555555555544311      11123567899999999999999999999


Q ss_pred             cCCcccccccceee
Q psy3231         399 TMEKTFYRNVATVS  412 (420)
Q Consensus       399 ~~~~~~~c~~c~~~  412 (420)
                      ....++.+...+..
T Consensus       442 ~~~~~~~~~~~~~~  455 (467)
T COG5048         442 TNHAPLLCSILKSF  455 (467)
T ss_pred             ccCCceeecccccc
Confidence            98887776655543

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.53  E-value=0.18  Score=31.67  Aligned_cols=31  Identities=23%  Similarity=0.481  Sum_probs=25.8

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcC
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHD  119 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  119 (420)
                      ..++..+.|+.|+..|....+..+|+...|.
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            3466778999999999999999999887764

>KOG4173|consensus

Probab=89.30  E-value=0.26  Score=40.44  Aligned_cols=77  Identities=23%  Similarity=0.591  Sum_probs=59.0

Q ss_pred             CCcccccc--CccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhc----------cCCCcccc--ccc
Q psy3231          92 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH----------KGPKIFTC--AQC  157 (420)
Q Consensus        92 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h----------~~~~~~~C--~~C  157 (420)
                      ...|.|++  |...|.+......|....|+    ..|.+|.+.|.+..-|..|+...          .|...|+|  ..|
T Consensus        77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgC  152 (253)
T KOG4173|consen   77 VPAFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGC  152 (253)
T ss_pred             cccccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhh
Confidence            45578876  88899988888888765564    47999999999988888887543          24567888  458


Q ss_pred             cccccChHHHHHHHH
Q psy3231         158 DKAFSLKSNLSKHVR  172 (420)
Q Consensus       158 ~~~f~~~~~l~~H~~  172 (420)
                      +..|.+...-..|+-
T Consensus       153 t~KFkT~r~RkdH~I  167 (253)
T KOG4173|consen  153 TEKFKTSRDRKDHMI  167 (253)
T ss_pred             hhhhhhhhhhhhHHH
Confidence            888888888777764

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=88.74  E-value=0.2  Score=28.45  Aligned_cols=10  Identities=10%  Similarity=0.069  Sum_probs=5.9

Q ss_pred             ccccccccee
Q psy3231         402 KTFYRNVATV  411 (420)
Q Consensus       402 ~~~~c~~c~~  411 (420)
                      .|+.|++||.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            5556666654

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=87.72  E-value=1  Score=33.70  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             cccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhc---ccCC-Ccc------------cccccccccCChh
Q psy3231         290 YVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRN---HECT-SCF------------TCPFCQRKYKIEK  353 (420)
Q Consensus       290 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~---H~~~-~~~------------~C~~C~~~f~~~~  353 (420)
                      |.|+.|+-..-            .-|..|++||-+.....+|.+   |+-. ++|            .|--|+..|....
T Consensus         2 Y~CPrC~skvC------------~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~   69 (112)
T TIGR00622         2 YFCPQCRAKVC------------ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPP   69 (112)
T ss_pred             ccCCCCCCCcc------------CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcc
Confidence            67777764432            247789999998888777754   3221 111            3777777776433


Q ss_pred             HHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhc
Q psy3231         354 HLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       354 ~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      ...          +........|.|+.|..-|-..-++-.|...|.
T Consensus        70 ~~~----------~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        70 VSP----------FDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             ccc----------ccccccccceeCCCCCCccccccchhhhhhccC
Confidence            110          000122346889999999998888888887775

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=87.17  E-value=0.95  Score=34.12  Aligned_cols=73  Identities=18%  Similarity=0.337  Sum_probs=46.0

Q ss_pred             CCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhcc-----------------------C
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK-----------------------G  148 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-----------------------~  148 (420)
                      -+...|..|+..... +++..|++..|.......-          ..+..-.+...                       .
T Consensus         9 ~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~----------~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~   77 (109)
T PF12013_consen    9 YRVLICRQCQYAVQP-SEVESHLRKRHHILKSQER----------QRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPV   77 (109)
T ss_pred             CCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHH----------HHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCC
Confidence            355789999988766 8899999866643211100          01111111100                       0


Q ss_pred             CCcccc----ccccccccChHHHHHHHHHhc
Q psy3231         149 PKIFTC----AQCDKAFSLKSNLSKHVRHHM  175 (420)
Q Consensus       149 ~~~~~C----~~C~~~f~~~~~l~~H~~~h~  175 (420)
                      ...|.|    ..|++.+.+...+..|++.++
T Consensus        78 ~~G~~C~~~~~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   78 YDGYRCQCDPPHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             CCCeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence            123899    999999999999999988654

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.16  E-value=0.53  Score=24.98  Aligned_cols=9  Identities=33%  Similarity=1.150  Sum_probs=4.9

Q ss_pred             ccccccccc
Q psy3231         341 TCPFCQRKY  349 (420)
Q Consensus       341 ~C~~C~~~f  349 (420)
                      .|+.||..|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            355555555

Several members are annotated as putative helicases.

>KOG2893|consensus

Probab=84.72  E-value=0.24  Score=41.61  Aligned_cols=41  Identities=34%  Similarity=0.560  Sum_probs=23.8

Q ss_pred             CCccCCcCCCchhhhcccCCCcccccccccccCChhHHHHH
Q psy3231         318 CNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKH  358 (420)
Q Consensus       318 C~~C~~~f~~~~~l~~H~~~~~~~C~~C~~~f~~~~~l~~H  358 (420)
                      |=.|..-|.+..-|.+|...+.|+|.+|.+..-+--.|..|
T Consensus        13 cwycnrefddekiliqhqkakhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhhccceeeeehhhhccCCCceee
Confidence            44555555555566666655666666666665555555554

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=83.92  E-value=0.51  Score=29.71  Aligned_cols=31  Identities=16%  Similarity=0.267  Sum_probs=25.3

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcC
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ..|+-.++|+-||+.|....++.+|...-++
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            4556678999999999999999999975444

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=82.77  E-value=1.3  Score=33.30  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=23.3

Q ss_pred             ccc----cccccccCChhHHHHHHhhhcC
Q psy3231         376 QKC----RYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       376 ~~C----~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      |.|    ..|++.+.+...+..|.+.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            789    9999999999999999998775

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=82.51  E-value=0.68  Score=44.56  Aligned_cols=54  Identities=26%  Similarity=0.473  Sum_probs=34.5

Q ss_pred             ccccCCCccccCCHHHHHccccc-cCCCC--Cceecc--cccccccChHHHHHHhhccC
Q psy3231         205 RFKCPCCERIFTSETRMRNHIDM-KHADE--NLFKCK--KCLKVFSDEIKFHLHGRAHA  258 (420)
Q Consensus       205 ~~~C~~C~~~f~~~~~l~~H~~~-~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~  258 (420)
                      ++.|..|...|.....|..|.+. .|.++  .++.|+  .|++.|.....+..|...|.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc
Confidence            56677777777777777777642 56666  666666  56666666666666655554

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=82.48  E-value=1  Score=29.00  Aligned_cols=12  Identities=50%  Similarity=1.157  Sum_probs=6.7

Q ss_pred             CCCcccCCccCC
Q psy3231         312 HGNPYMCNHCFL  323 (420)
Q Consensus       312 h~~~~~C~~C~~  323 (420)
                      ++++|.|+.||.
T Consensus        47 ~g~~Y~Cp~CGF   58 (61)
T COG2888          47 LGNPYRCPKCGF   58 (61)
T ss_pred             cCCceECCCcCc
Confidence            345666666654

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.91  E-value=1.1  Score=33.40  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=12.3

Q ss_pred             ccccccchhccCChhHHHHHHhhC
Q psy3231         289 AYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       289 ~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      .|.|+.|...|-..-+...|...|
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhcc
Confidence            355555555555555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=80.03  E-value=0.82  Score=26.09  Aligned_cols=11  Identities=18%  Similarity=0.504  Sum_probs=6.2

Q ss_pred             ccccccccccC
Q psy3231         376 QKCRYCQRMFR  386 (420)
Q Consensus       376 ~~C~~C~~~f~  386 (420)
                      |.|..||+.+.
T Consensus         3 ~~C~~CG~i~~   13 (34)
T cd00729           3 WVCPVCGYIHE   13 (34)
T ss_pred             EECCCCCCEeE
Confidence            55666665543

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-20
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-13
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-11
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		7e-08
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		4e-05
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-07
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		5e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		5e-07
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		9e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		6e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		7e-05
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		6e-04
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-04
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		5e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		7e-04
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		6e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		7e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		5e-04
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		7e-06
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		7e-06
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		4e-05
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		7e-05
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		1e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		3e-04
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		3e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		6e-04
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		7e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 114 MAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRH 173
            AA    +K Y C  C + +    +L  H + H G K + C +C K+FS K +L++H R 
Sbjct: 12  QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 174 HM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHAD 231
           H  E   +C  C + F     L  H ++H   + + CP C + F+    +R H    H  
Sbjct: 72  HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTG 130
Query: 232 ENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
           E  +KC +C K FS E   H H R H   K Y+C EC K F+  D +  H R +  K+ +
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 77/202 (38%), Gaps = 38/202 (18%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRC 263
           + CP C + F+    +  H    H  E  +KC +C K FSD+     H R H   K Y+C
Sbjct: 22  YACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 264 SECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PYMCNHC 321
            EC K F+    +R H R  H  E  Y C  C  SF   + L  H   H    PY C  C
Sbjct: 81  PECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 322 FLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC 381
              F  E NL  H           QR +  EK                       KC  C
Sbjct: 140 GKSFSREDNLHTH-----------QRTHTGEKPY---------------------KCPEC 167
Query: 382 QRMFRNEDKLTAHELSHTMEKT 403
            + F   D L  H+ +HT +KT
Sbjct: 168 GKSFSRRDALNVHQRTHTGKKT 189

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ +KC  C KSF   SN+++H   TH  +K YKC  C + +    +L+ H + H G K 
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM 175
           + C +C K+FS   +LS+H R H 
Sbjct: 61  YKCPECGKSFSRSDHLSRHQRTHQ 84

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRC 263
           +KCP C + F+  + ++ H    H  E  +KC +C K FS       H R H   K Y+C
Sbjct: 5   YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 264 SECEKRFATEDIMRQHFRNYHNKE 287
            EC K F+  D + +H R + NK+
Sbjct: 64  PECGKSFSRSDHLSRHQRTHQNKK 87

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGN--PY 316
           K Y+C EC K F+    +++H R  H  E  Y C  C  SF   S L  H   H    PY
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 317 MCNHCFLMFPDEKNLRNHECT 337
            C  C   F    +L  H+ T
Sbjct: 62  KCPECGKSFSRSDHLSRHQRT 82

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 95  FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
           F C++C KSF   S +  H+   H   + Y C+ C + +  K ++K H  +H G K   C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 155 AQCDKAFSLKSNLSKHVRHH 174
             C KAFS  SNL  H R H
Sbjct: 61  QVCGKAFSQSSNLITHSRKH 80

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F  K+N+  H+   H  QK ++C++C R +  + +L AH++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+     ++H + H+
Sbjct: 61  KPFACDICGRKFATLHTRTRHTKIHL 86

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
           CD+ FS K+NL  H+R H  +   QC+IC+  F     L  H+++H   + F C  C R 
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 215 F-TSETRMR 222
           F T  TR R
Sbjct: 72  FATLHTRTR 80

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--K 259
           R + CP   C+R F+ +T +  HI + H  +  F+C+ C++ FS +   + H R H   K
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNKED 288
            + C  C ++FAT     +H + +  ++D
Sbjct: 62  PFACDICGRKFATLHTRTRHTKIHLRQKD 90

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 127 KLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHMENVKQCKI-- 183
           K C +M+R    ++ HL  H GP++  CA+C KAF   S L +H + H  E   QC    
Sbjct: 11  KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 184 CLEIFEDDEVLEEHVKSH-QNRRFKCP--CCERIFTSETRMRNHIDMKHA 230
           C + F  D  L  HV+ H  +R + CP   C + F   T +++HI + HA
Sbjct: 70  CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI-LTHA 118

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCK 182
           +KC++C + +  K  LK H++ H G K + C  CD A +  S+L+KH+R H  E   +C+
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 183 ICLEIFEDDEVLEEHVKSHQN 203
           IC     +   L  H++SH  
Sbjct: 69  ICPYASRNSSQLTVHLRSHTG 89

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F   SN+ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
           CD+ FS  SNL++H+R H  +   QC+IC+  F   + L  H+++H   + F C  C R 
Sbjct: 12  CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
           F      + H  +
Sbjct: 72  FARSDERKRHTKI 84

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 89  SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
           S  ++ + C+ C KSF HKS   RHM+  H   + Y C +C + ++ K +L  H+K+H G
Sbjct: 5   SSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 149 PKIFTCAQCDKAFSLKSNLSKHV 171
            K + C  C K F  + +  +HV
Sbjct: 63  IKPYECNICAKRFMWRDSFHRHV 85

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F  K+N+  H+   H  QK ++C++C R +     L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFATLHTRDRHTKIHL 86

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
           CD+ FS K+NL  H+R H  +   QC+IC+  F     L +H+++H   + F C  C R 
Sbjct: 12  CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 215 FTS 217
           F +
Sbjct: 72  FAT 74

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 204 RRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--K 259
           R + CP   C+R F+ +T +  HI + H  +  F+C+ C++ FS     + H R H   K
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRI-HTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 260 FYRCSECEKRFATEDIMRQHFRNYHNK 286
            + C  C ++FAT      H R+ H K
Sbjct: 62  PFACDICGRKFAT-----LHTRDRHTK 83

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F   +++ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
           CD+ FS  ++L++H+R H  +   QC+IC+  F   + L  H+++H   + F C  C R 
Sbjct: 12  CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
           F      + H  +
Sbjct: 72  FARSDERKRHTKI 84

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 125 KCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHM---ENVKQ 180
           +C  C + +  K+ LK H + H G K F C +C K +  K NL +H  R+ M   E V  
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 181 CKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNHIDMKHADEN 233
           C +C E F     L  H+ SH     +KC  C + F  +  +++H+   H+  +
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F    ++ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
           CD+ FS   +L++H+R H  +   QC+IC+  F   + L  H+++H   + F C  C R 
Sbjct: 12  CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
           F      + H  +
Sbjct: 72  FARSDERKRHTKI 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F   + + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 157 CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERI 214
           CD+ FS  + L++H+R H  +   QC+IC+  F   + L  H+++H   + F C  C R 
Sbjct: 12  CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 215 FTSETRMRNHIDM 227
           F      + H  +
Sbjct: 72  FARSDERKRHTKI 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F     + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 60  KPFACDICGRKFARSDERKRHTKIHL 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F     + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 204
           H+ P       CD+ FS    L++H+R H  +   QC+IC+  F   + L  H+++H   
Sbjct: 1   HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 205 R-FKCPCCERIFTSETRMRNHIDM 227
           + F C  C R F      + H  +
Sbjct: 61  KPFACDICGRKFARSDERKRHTKI 84

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F     + RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           K F C  C + F+      +H + H+
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHL 86

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHMENVK-QCKICL 185
           C ++Y    +LKAHL+ H G K + C    CD  F+    L++H R H      QC +C 
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 186 EIFEDDEVLEEHVKSHQN 203
             F   + L  H+K HQN
Sbjct: 83  RSFSRSDHLALHMKRHQN 100

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           K YKC  C   +RYK NL +H  +H G K + C  C   F+  +NL  H R H
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 97  CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP--KIFTC 154
           CE+C K F    ++ RH   +H  +K Y C +C   ++ K  +  H++ H G   K + C
Sbjct: 10  CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 155 AQCDKAFSLKSNLSKHVRH 173
             C K FS   +L+ H++ 
Sbjct: 69  QSCGKGFSRPDHLNGHIKQ 87

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 82  QIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKA 141
           ++P++ K    ++F C+ C + F    N+  H   TH  ++ Y C +C + +R + +L+ 
Sbjct: 9   RLPSKTK----KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN 177
           H  +H   K F C +C K F     L+ H   HM+ 
Sbjct: 64  HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 91  QERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG 148
           + R++KC+ C KSF H S++ +H   TH  +K YKC  C + +  + +L  H ++H G
Sbjct: 15  ERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 113 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
           H     D +  Y C +C R Y    +L+ H  +H   K + C  C+K F L    +KH  
Sbjct: 12  HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 173 HHM-ENVKQCKICLEIFEDDEVLEEHVKS 200
           HH  E   QC  C + F + + +  H+KS
Sbjct: 72  HHTGERRYQCLACGKSFINYQFMSSHIKS 100

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 110 IRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKS 165
           +RRH       +K +KC    C + Y    NLK HL+ H G K + C    C KAFS  S
Sbjct: 59  MRRHTG-----EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 166 NLSKHVR--HHMENVKQCKI--CLEIFEDDEVLEEHVKS 200
           + +KH    H  E    CK+  C + + D   L +HVK+
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 129 CARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMENVK--QCKIC 184
           C + Y    +L+ H + H G K + C    C++ FS    L +H R H   VK  QCK C
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-GVKPFQCKTC 72
Query: 185 LEIFEDDEVLEEHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDM 227
              F   + L+ H ++H   + F C  P C++ F     +  H +M
Sbjct: 73  QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 211 CERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCSE- 265
           C   +    +++ H+  KH  E  F CK+  C K F+       H   H   K + C   
Sbjct: 20  CGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 266 -CEKRFATEDIMRQHFRNYHN-KEDAYVCNY--CYDSFETKSTLVDHFFHHGN--PYMCN 319
            C+ RF T+  M++HF  +HN K   YVC++  C  +F+  + L  H F H    PY C 
Sbjct: 79  GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 320 H--CFLMFPDEKNLRNHE-------CTSCFTCPFCQRKYKIEKHLEKHIESCIQ 364
           H  C   F     L+ HE       C    +C F  + + +     KH+  C Q
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKHVAECHQ 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-18
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-13
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-15
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-14
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-13
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-13
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-08
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-13
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-13
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	6e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-10
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-11
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-06
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-10
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	9e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-10
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-10
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-10
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	9e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-07
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	3e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	1e-04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	2e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-05
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	1e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	1e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	2e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	2e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	2e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	3e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	3e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	5e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	6e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	7e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	7e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	7e-04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	7e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 80.6 bits (200), Expect = 5e-18
 Identities = 59/209 (28%), Positives = 80/209 (38%), Gaps = 33/209 (15%)

Query: 103 SFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS 162
           S    S+     A     +K Y C  C + +    +L  H + H G K + C +C K+FS
Sbjct: 2   SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60

Query: 163 LKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRM 221
            K +L++H R H  E   +C  C + F     L  H              +R        
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH--------------QRT------- 99

Query: 222 RNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQH 279
                  H  E  + C +C K FS       H R H   K Y+C EC K F+ ED +  H
Sbjct: 100 -------HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152

Query: 280 FRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
            R  H  E  Y C  C  SF  +  L  H
Sbjct: 153 QR-THTGEKPYKCPECGKSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 36/195 (18%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ + C  C KSF    ++  H   TH  +K YKC  C + +  K +L  H + H G K 
Sbjct: 19  EKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77

Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 210
           + C +C K+FS ++NL  H R H  E                           + + CP 
Sbjct: 78  YKCPECGKSFSQRANLRAHQRTHTGE---------------------------KPYACPE 110

Query: 211 CERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSEC 266
           C + F+    +R H      H  E  +KC +C K FS E   H H R H   K Y+C EC
Sbjct: 111 CGKSFSQLAHLRAHQRT---HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

Query: 267 EKRFATEDIMRQHFR 281
            K F+  D +  H R
Sbjct: 168 GKSFSRRDALNVHQR 182

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 66.3 bits (163), Expect = 5e-13
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 30/167 (17%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           E+ +KC  C KSF  K ++ RH   TH  +K YKC  C + +  + NL+AH + H G K 
Sbjct: 47  EKPYKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105

Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC 210
           + C +C K+FS  ++L  H R H  E   +C  C + F  ++ L  H             
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH------------- 152

Query: 211 CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
            +R               H  E  +KC +C K FS     ++H R H
Sbjct: 153 -QRT--------------HTGEKPYKCPECGKSFSRRDALNVHQRTH 184

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 53/197 (26%), Positives = 70/197 (35%), Gaps = 47/197 (23%)

Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
              E  + C +C K FS       H R H   K Y+C EC K F+ +  + +H R  H  
Sbjct: 16  EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG 74

Query: 287 EDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMCNHCFLMFPDEKNLRNH---------- 334
           E  Y C  C  SF  ++ L  H   H G  PY C  C   F    +LR H          
Sbjct: 75  EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134

Query: 335 ECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQ---------KCRYCQRMF 385
           +C  C    F +       +L  H                 Q         KC  C + F
Sbjct: 135 KCPECGKS-FSRE-----DNLHTH-----------------QRTHTGEKPYKCPECGKSF 171

Query: 386 RNEDKLTAHELSHTMEK 402
              D L  H+ +HT +K
Sbjct: 172 SRRDALNVHQRTHTGKK 188

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 69.8 bits (172), Expect = 4e-15
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
               KCE+C K F  K  ++ HM   H   K YKCK C        +L  HL++H   + 
Sbjct: 6   SGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64

Query: 152 FTCAQCDKAFSLKSNLSKHVRHH 174
           F C  C  A    S L+ H+R H
Sbjct: 65  FKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM- 175
           +      +KC++C + +  K  LK H++ H G K + C  CD A +  S+L+KH+R H  
Sbjct: 2   SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61

Query: 176 ENVKQCKICLEIFEDDEVLEEHVKSH 201
           E   +C+IC     +   L  H++SH
Sbjct: 62  ERPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
                  KC+ C K FS + K   H R H   K Y+C  C+   A    + +H R  H+ 
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSD 61

Query: 287 EDAYVCNYCYDSFETKSTLVDH 308
           E  + C  C  +    S L  H
Sbjct: 62  ERPFKCQICPYASRNSSQLTVH 83

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
            + +KC+ C  +    S++ +H+   H  ++ +KC++C    R    L  HL+ H G   
Sbjct: 34  VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92

Query: 152 FTCA 155
            +  
Sbjct: 93  PSSG 96

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG-NPYMC 318
           ++C  C K F+ +D ++ H R  H     Y C  C  +    S+L  H   H    P+ C
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

Query: 319 NHCFLMFPDEKNLRNH 334
             C     +   L  H
Sbjct: 68  QICPYASRNSSQLTVH 83

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 66.7 bits (164), Expect = 4e-14
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 92  ERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           ER + C  E C + F    ++ RH+   H  QK ++C++C R +    +L  H++ H G 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
           K F C  C + F+      +H + H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
           ++ F+C +C ++F    ++  H+  TH  +K + C +C R +      K H K+H   K
Sbjct: 32  QKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 206 FKCPC--CERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFY 261
           + CP   C+R F+    +  HI   H  +  F+C+ C++ FS       H R H   K +
Sbjct: 5   YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63

Query: 262 RCSECEKRFATEDIMRQHFR 281
            C  C ++FA  D  ++H +
Sbjct: 64  ACDICGRKFARSDERKRHTK 83

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 235 FKC--KKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 290
           + C  + C + FS       H R H   K ++C  C + F+  D +  H R  H  E  +
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63

Query: 291 VCNYCYDSFETKSTLVDH 308
            C+ C   F        H
Sbjct: 64  ACDICGRKFARSDERKRH 81

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 67.5 bits (166), Expect = 5e-14
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHM--AATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           E+ F+C  C K +  K N+  H      +  ++ + C +C   +R +  L+ H+  H G 
Sbjct: 33  EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE 92

Query: 150 KIFTCAQCDKAFSLKSNLSKH 170
             + C+ C + F  K +L  H
Sbjct: 93  MPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAH---LKMHKG 148
               +C  C K F  K  ++ H    H  +K ++C  C + Y  K NL  H     M++ 
Sbjct: 5   SSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63

Query: 149 PKIFTCAQCDKAFSLKSNLSKHVRHH 174
            ++FTC+ C + F  +  L  H+  H
Sbjct: 64  EQVFTCSVCQETFRRRMELRLHMVSH 89

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM----EN 177
              +C  C + +  K+ LK H + H G K F C +C K +  K NL +H   +     E 
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65

Query: 178 VKQCKICLEIFEDDEVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH 224
           V  C +C E F     L  H+ SH     +KC  C + F  +  +++H
Sbjct: 66  VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 32/139 (23%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSHQNR 204
             G     C  C K F  K  L  H R H  E                           +
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---------------------------K 34

Query: 205 RFKCPCCERIFTSETRMRNH--IDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KF 260
            F+CP C + +  +  +  H   +  +  E +F C  C + F   ++  LH  +H     
Sbjct: 35  PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94

Query: 261 YRCSECEKRFATEDIMRQH 279
           Y+CS C ++F  +  ++ H
Sbjct: 95  YKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA-----KF 260
            +CP C + F S+  ++ H + KH  E  F+C KC K +  +     H   +      + 
Sbjct: 8   VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66

Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
           + CS C++ F     +R H  + H  E  Y C+ C   F  K  L  H
Sbjct: 67  FTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 22/115 (19%)

Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH----FFHHG- 313
               C  C K+F ++  ++ H R  H  E  + C  C   +  K  L++H      +   
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64

Query: 314 NPYMCNHCFLMFPDEKNLRNH----------ECTSCFTCPFCQRKYKIEKHLEKH 358
             + C+ C   F     LR H          +C+SC    F Q+     K L+ H
Sbjct: 65  QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ-FMQK-----KDLQSH 113

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 65.1 bits (160), Expect = 2e-13
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           +++F C+ C + F    N+  H   TH  ++ Y C +C + +R + +L+ H  +H   K 
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73

Query: 152 FTCAQCDKAFSLKSNLSKHVRHHM 175
           F C +C K F     L+ H   HM
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHM 97

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 107 KSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSN 166
            S            +K++ CK C R +   +NL  H + H   + +TC  C KAF  + +
Sbjct: 2   SSGSSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60

Query: 167 LSKHVRHH 174
           L  H   H
Sbjct: 61  LRDHRYIH 68

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
              +  F CK C + F+      +H R H   + Y C  C K F  +D +R H    H+K
Sbjct: 12  SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSK 70

Query: 287 EDAYVCNYCYDSFETKSTLVDH-FFHHG-NPYMCN 319
           E  + C  C   F    TL  H   H   +     
Sbjct: 71  EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.0 bits (105), Expect = 5e-06
 Identities = 27/158 (17%), Positives = 38/158 (24%), Gaps = 58/158 (36%)

Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
                    K  K F C  C + F+   NL                              
Sbjct: 4   GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLI---------------------------- 35

Query: 198 VKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH 257
              H+          R               H DE  + C  C K F  +     H   H
Sbjct: 36  ---HE----------RT--------------HTDERPYTCDICHKAFRRQDHLRDHRYIH 68

Query: 258 A--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
           +  K ++C EC K F     +  H    H +  +    
Sbjct: 69  SKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTAA 105

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           ER + C++C K+F  + ++R H    H  +K +KC+ C + +     L  H  +H     
Sbjct: 43  ERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101

Query: 152 FTC 154
            T 
Sbjct: 102 PTA 104

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 63.2 bits (155), Expect = 5e-13
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 95  FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
           F C++C KSF   S +  H+   H   + Y C+ C + +  K ++K H  +H G K   C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60

Query: 155 AQCDKAFSLKSNLSKHVRHH 174
             C KAFS  SNL  H R H
Sbjct: 61  QVCGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
           F CK C K F        H   H+  + Y C  C KRF  +  M++H    H  E  + C
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60

Query: 293 NYCYDSFETKSTLVDH 308
             C  +F   S L+ H
Sbjct: 61  QVCGKAFSQSSNLITH 76

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 63.3 bits (155), Expect = 7e-13
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKG--P 149
                CE+C K F    ++ RH   +H  +K Y C +C   ++ K  +  H++ H G   
Sbjct: 5   SSGVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63

Query: 150 KIFTCAQCDKAFSLKSNLSKHVR 172
           K + C  C K FS   +L+ H++
Sbjct: 64  KPYICQSCGKGFSRPDHLNGHIK 86

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 52.1 bits (126), Expect = 6e-09
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVK- 179
               C++C +++R  ++L  H   H G K ++C  C   F  K  +S HVR H     K 
Sbjct: 6   SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 180 -QCKICLEIFEDDEVLEEHVK 199
             C+ C + F   + L  H+K
Sbjct: 66  YICQSCGKGFSRPDHLNGHIK 86

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.2 bits (103), Expect = 8e-06
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
            +  +   C+ C K+F D    + H  +H+  K Y C  C  RF  +D M  H R+ H+ 
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDG 60

Query: 287 EDA--YVCNYCYDSFETKSTLVDH 308
                Y+C  C   F     L  H
Sbjct: 61  SVGKPYICQSCGKGFSRPDHLNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEHVKSH--- 201
             G     C  C K F    +L++H   H  E    C +C   F+  + +  HV+SH   
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 202 QNRRFKCPCCERIFTSETRMRNHIDMKH 229
             + + C  C + F+    +  HI   H
Sbjct: 62  VGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAH----AKFY 261
             C  C +IF     +  H  + H+ E  + C  C   F  + +   H R+H     K Y
Sbjct: 8   VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66

Query: 262 RCSECEKRFATEDIMRQHFRNYH 284
            C  C K F+  D +  H +  H
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHD--LQKKYKCKLCARMYRYKWNLKAHLKM-HKG 148
           E+ + C +C   F  K  +  H+  +HD  + K Y C+ C + +    +L  H+K  H G
Sbjct: 33  EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91

Query: 149 PK 150
           P 
Sbjct: 92  PS 93

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 90  IQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
           ++ R   C    C K F   S +R+H+  TH   + + C  C + +     LK H  +H 
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHL-HTHG-PRVHVCAECGKAFVESSKLKRHQLVHT 58

Query: 148 GPKIFTCA--QCDKAFSLKSNLSKHVRHH 174
           G K F C    C K FSL  NL  HVR H
Sbjct: 59  GEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 149
            R   C  C K+F   S ++RH    H  +K ++C    C + +   +NL+ H+++H G 
Sbjct: 32  PRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90

Query: 150 KIFTCA--QCDKAFSLKSNLSKHVRHH 174
           + + C    C+K F+  +NL  H+  H
Sbjct: 91  RPYVCPFDGCNKKFAQSTNLKSHILTH 117

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 95  FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC 154
           F+C +C ++F    ++  H+  TH  +K + C +C R +      K H  +         
Sbjct: 4   FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61

Query: 155 AQCDKAFSLKSNLSKHVRHH 174
            + ++  S   +L   V   
Sbjct: 62  DKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQC 181
           K ++C++C R +    +L  H++ H G K F C  C + F+      +H           
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61

Query: 182 KICLEIFEDDEVLEEHVK 199
               E+   +  LE  V 
Sbjct: 62  DKVEELLSKNYHLENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVC 292
           F+C+ C++ FS       H R H   K + C  C ++FA  D  ++H    H      + 
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILE 61

Query: 293 NYCYDSFETKSTLVDHFFHH 312
           +   +       L +     
Sbjct: 62  DKVEELLSKNYHLENEVARL 81

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 261 YRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHGNPYMCN 319
           ++C  C + F+  D +  H R  H  E  + C+ C   F        H    H  P + +
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62

Query: 320 HCFLMFPDEKNLRNH 334
               +     +L N 
Sbjct: 63  KVEELLSKNYHLENE 77

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 61.7 bits (151), Expect = 4e-12
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           ++ + C+ C KSF HKS   RHM+  H   + Y C +C + ++ K +L  H+K+H G K 
Sbjct: 8   DKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65

Query: 152 FTCAQCDKAFSLKSNLSKHVRHHMENVKQCKIC 184
           + C  C K F  + +  +HV        +    
Sbjct: 66  YECNICAKRFMWRDSFHRHV-TSCTKSYEAAKA 97

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 57.1 bits (139), Expect = 2e-10
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
            R + C +C K F  K ++  HM   H   K Y+C +CA+ + ++ +   H  +    K 
Sbjct: 35  LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKS 91

Query: 152 FTCAQCDKAFSLKSNLS 168
           +  A+ ++  +  S  S
Sbjct: 92  YEAAKAEQNTTEASGPS 108

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNK 286
           H     + C  C K F  +     H + H   K Y C+ C KRF   D   +H     + 
Sbjct: 32  HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV---TSC 88

Query: 287 EDAYVCNYCYDSFETKSTL 305
             +Y       +    S  
Sbjct: 89  TKSYEAAKAEQNTTEASGP 107

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 92  ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 147
           +R F C    C K +   S+++ H    H  +K Y+C    C R +     LK H + H 
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62

Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           G K F C  C + FS   +L  H R H
Sbjct: 63  GVKPFQCKTCQRKFSRSDHLKTHTRTH 89

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 61.0 bits (149), Expect = 8e-12
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 92  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           E+ ++C+   C + F     ++RH    H   K ++CK C R +    +LK H + H G 
Sbjct: 34  EKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92

Query: 150 KIFTC--AQCDKAFSLKSNLSKHVRHH 174
           K F+C    C K F+    L +H   H
Sbjct: 93  KPFSCRWPSCQKKFARSDELVRHHNMH 119

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 63/168 (37%)

Query: 122 KKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHMEN 177
           + + C    C + Y    +L+ H + H G K + C    C++ FS    L          
Sbjct: 5   RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL---------- 54

Query: 178 VKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC 237
                                K HQ          R               H     F+C
Sbjct: 55  ---------------------KRHQ----------RR--------------HTGVKPFQC 69

Query: 238 KKCLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFR 281
           K C + FS       H R H   K + C    C+K+FA  D + +H  
Sbjct: 70  KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 40/207 (19%)

Query: 92  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 147
            +++ C    C  +++    ++ H+   H  +K + CK   C + +    +L  H   H 
Sbjct: 10  YKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68

Query: 148 GPKIFTCAQ--CDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKSHQNR 204
           G K FTC    CD  F+ K+N+ KH    H   +                          
Sbjct: 69  GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV------------------------ 104

Query: 205 RFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAH--A 258
            + C    C + F    +++ H    H  +  ++C    C K FS   +   H + H   
Sbjct: 105 -YVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 162

Query: 259 KFYRCSECEKRFATEDIMRQHFRNYHN 285
              +   C     T  +  +H    H 
Sbjct: 163 PCKKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 16/183 (8%)

Query: 141 AHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM-ENVKQCK--ICLEIFEDDEVLE 195
               +    K + C  A C  A++    L  H+  H  E    CK   C + F     L 
Sbjct: 2   GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61

Query: 196 EHVKSHQNRR-FKC--PCCERIFTSETRMRNHIDMKHADENL-FKC--KKCLKVFSDEIK 249
            H  +H   + F C    C+  FT++  M+ H +  H  +   + C  + C K F    +
Sbjct: 62  RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121

Query: 250 FHLHGRAHA--KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL 305
             +H  +H     Y C    C+KRF+    +++H +  H        + C    +T +  
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLY 180

Query: 306 VDH 308
           + H
Sbjct: 181 LKH 183

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 95  FKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPK 150
           + C    C K+F   + ++ H   +H  Q  Y+C    C + +     LK H K+H G  
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163

Query: 151 IFTCAQCDKAFSLKSNLSKHVRH-HME 176
                 C       +   KHV   H +
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAECHQD 190

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 44/225 (19%), Positives = 62/225 (27%), Gaps = 75/225 (33%)

Query: 117 THDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVR 172
              + K+Y C    C   Y   W L+AHL  H G K F C +  C+K F+   +L++   
Sbjct: 6   LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR--- 62

Query: 173 HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADE 232
                                       H                           H  E
Sbjct: 63  ----------------------------HS----------LT--------------HTGE 70

Query: 233 NLFKCK--KCLKVFSDEIKFHLHGRAH----AKFYRCS--ECEKRFATEDIMRQHFRNYH 284
             F C    C   F+ +     H           Y C    C K F   + ++ H  + H
Sbjct: 71  KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-H 129

Query: 285 NKEDAYVCN--YCYDSFETKSTLVDHF-FHHGN----PYMCNHCF 322
            ++  Y C    C   F   S L  H   H G        C+   
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVG 174

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMH---KGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 177
              +C++C    R K +L  H + H        F C  C K F    +++ H    H   
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 178 VKQCK 182
           +   +
Sbjct: 66  LLAPQ 70

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQ---KKYKCKLCARMYRYKWNLKAHLKMHKG 148
               +CE+C  +   K+++  H    H       ++ C+ C + +    ++ AH      
Sbjct: 5   SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63

Query: 149 PKIFTCAQCDKAFS 162
             +    +     S
Sbjct: 64  ALLLAPQESSGPSS 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK----QCKICLEIFEDDEVLEEHVKSH 201
             G     C  C      K++L+ H R H E V      C+ C + FE  + +  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 202 QNRRFKCPCC 211
                  P  
Sbjct: 62  HPALLLAPQE 71

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 5/66 (7%)

Query: 235 FKCKKCLKVFSDEIKFHLHGRAHA-----KFYRCSECEKRFATEDIMRQHFRNYHNKEDA 289
            +C+ C      +   + H R HA       + C  C KRF   D +  H    H     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 290 YVCNYC 295
                 
Sbjct: 68  APQESS 73

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYK-----WNLKAHLK 144
           E   + + C + FD +  +  H+ +   H  +K++ C         +     + L  H++
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 145 MHKGPKIFTC--AQCDKAFSLKSNLSKHVRHH 174
            H G K   C    C K++S   NL  H+R H
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 97  CEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTC 154
           C    + F  +  +  HM   H  +K +KC    C + Y    NLK HL+ H G K + C
Sbjct: 42  CSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100

Query: 155 AQ--CDKAFSLKSNLSKHVR--HHMENVKQCKI--CLEIFEDDEVLEEHVKSH 201
               C KAFS  S+ +KH    H  E    CK+  C + + D   L +HVK+ 
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 35/171 (20%)

Query: 150 KIFTCAQCDKAFSLKSNLSKHVR----HHMENVKQCKICLEIFEDDEVLEEHVKSHQNRR 205
                  C + F  +  L  H+     H       C                        
Sbjct: 2   TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG--------------------- 40

Query: 206 FKCPCCERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--KFY 261
             C    R F ++  +  H+  +H  E   KC    C K +S       H R+H   K Y
Sbjct: 41  -GCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98

Query: 262 RCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDH 308
            C    C K F+      +H    H+ E  YVC    C   +   S+L  H
Sbjct: 99  MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 28/85 (32%)

Query: 92  ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP 149
           E+ + CE   C K+F + S+  +H   TH  +K Y CK                      
Sbjct: 95  EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK---------------------- 132

Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
                  C K ++  S+L KHV+  
Sbjct: 133 ----LPGCTKRYTDPSSLRKHVKTV 153

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAAT----HDLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
             KF+C+ C  ++D    +  HM  T     D  +             K +L        
Sbjct: 17  ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76

Query: 148 GPKIFTCAQCDKAFSLKSNLSKHV--RHHMENV 178
             K+  C  C  +F    +LS H+    H + V
Sbjct: 77  AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 8/107 (7%)

Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVK------QCKICLEIFEDD 191
           + K +  +  G   F C  C  A+     L+ H+                          
Sbjct: 6   SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65

Query: 192 EVLEEHVKSHQNRR-FKCPCCERIFTSETRMRNH-IDMKHADENLFK 236
             L E       ++  KC  C   F S   +  H I  KH  +    
Sbjct: 66  RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           ++       KC  C+     K  L+ H ++H   + F C  C       SNLSKH++  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 254 GRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDH 308
           G + +     +CSEC    +++  +R H R  H  +  + CNYC    +  S L  H
Sbjct: 1   GSSGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRPFKCNYCSFDTKQPSNLSKH 56

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 92  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHK 147
                C+   C + F ++  +  H    H  QK + C    C + + +K +LK H+K+H 
Sbjct: 5   SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64

Query: 148 GPKIFTCAQCDKAF 161
             + + C     + 
Sbjct: 65  DTRDYICEFSGPSS 78

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP 149
                   C K++   S+++ H+  TH  +K Y C    C   +     L  H + H G 
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63

Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHHM 175
           + F C +CD+AFS   +L+ H++ H 
Sbjct: 64  RPFQCQKCDRAFSRSDHLALHMKRHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC--AQCDKAFSLKSNLSKHVRHHM 175
                      C + Y    +LKAHL+ H G K + C    C   F+    L++H R H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 176 -ENVKQCKICLEIFEDDEVLEEHVKSH 201
                QC+ C   F   + L  H+K H
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQ 202
                    A C K ++  S+L  H+R H  E    C    C   F   + L  H + H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 203 N-RRFKCPCCERIFT 216
             R F+C  C+R F+
Sbjct: 62  GHRPFQCQKCDRAFS 76

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 96  KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFT 153
           +C    KSF  K  +  H+   H  +K + C    C +++    NLK H + H G K F 
Sbjct: 64  ECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122

Query: 154 CA--QCDKAFSLKSNLSKHVRHH 174
           C    CD+ F+  S+  KH+  H
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 27/159 (16%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEEHVKS 200
              + +         CD+ FS    L  HV   H+   +Q        E           
Sbjct: 16  CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE----------- 64

Query: 201 HQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKK--CLKVFSDEIKFHLHGRAHA 258
                  CP   + F ++ ++ NHI   H  E  F C    C K+F+      +H R H 
Sbjct: 65  -------CPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116

Query: 259 --KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCN 293
             K ++C    C++RFA     ++H    H  + +   +
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 18/153 (11%)

Query: 102 KSFDHKSNIRRHMAA--THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT------ 153
            S      I++ ++     + Q     K C R +     L  H+ M              
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

Query: 154 ---CAQCDKAFSLKSNLSKHVRHHM-ENVKQCKI--CLEIFEDDEVLEEHVKSHQNRR-F 206
              C +  K+F  K  L  H+R H  E    C    C +IF   E L+ H ++H   + F
Sbjct: 62  WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121

Query: 207 KCPC--CERIFTSETRMRNHIDMKHADENLFKC 237
           KC    C+R F + +  + H+   H  +     
Sbjct: 122 KCEFEGCDRRFANSSDRKKHM-HVHTSDKSGPS 153

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATH----DLQKKYKCKLCARMYRYKWNLKAHLKMHK 147
           E+ + C  C K+F  K  +  H    +     +   + C  C + +  +  +  H     
Sbjct: 13  EKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71

Query: 148 GPKIFTCAQCDKAF 161
           GP          + 
Sbjct: 72  GPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKG----PKIFTCAQCDKAFSLKSNLSKHVR 172
           TH  +K Y C  C + +R K  L  H K +      P  F C++C K F+ ++ +++H  
Sbjct: 9   THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68

Query: 173 HH 174
           + 
Sbjct: 69  NC 70

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 25/108 (23%)

Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVKQCKICLEIFEDDEVLEE 196
           +  +  + H G K + C+ CDK F  K  L  H + +H  N                   
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP---------------- 45

Query: 197 HVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVF 244
                    F C  C + FT    M  H D   A  +  + +      
Sbjct: 46  -------AAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 253 HGRAHA--KFYRCSECEKRFATEDIMRQHFRNYH---NKEDAYVCNYCYDSFETKSTLVD 307
            GR H   K Y CS C+K F  + ++  HF+ YH       A+VC+ C  +F  ++T+  
Sbjct: 6   SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 308 H-FFHHG-NPYMCNHC 321
           H     G +     + 
Sbjct: 66  HADNCAGPDGVEGENS 81

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 53.7 bits (130), Expect = 8e-10
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 117 THDLQKKYKCKLCARMYRYKWNLKAHL--KMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           T + +  Y+CK+C+R+Y +  N   H      +  K++ C  C K F+ K N++ HV+  
Sbjct: 4   TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA----KFYRCSECEKRFATEDIMRQHFRNYH 284
              E+ ++CK C +V++    F  H         K Y C  C K F  +D M  H +  H
Sbjct: 5   KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 92  ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHK 147
            R   C+   C K +   S+++ H+  TH  +K YKC    C   +     L  H + H 
Sbjct: 13  RRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71

Query: 148 GPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           G K F C  C+++FS   +L+ H++ H
Sbjct: 72  GAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 194 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKC--KKCLKVF--SDEIK 249
             E  + H       P C +++T  + ++ H+   H  E  +KC  + C   F  SDE+ 
Sbjct: 9   DLEKRRIH---YCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELT 64

Query: 250 FHLHGRAH--AKFYRCSECEKRFATEDIMRQHFR 281
            H   R H  AK ++C  C + F+  D +  H +
Sbjct: 65  RHY--RKHTGAKPFQCGVCNRSFSRSDHLALHMK 96

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 108 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL 167
            +   H        K YKC  C   +RYK NL +H  +H G K + C  C   F+  +NL
Sbjct: 3   HHHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61

Query: 168 SKHVRHH 174
             H R H
Sbjct: 62  KTHTRIH 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMENVK--QCKICLEIFEDDEVL 194
           +  +  + H G K + C  C   F+    +  H+   H ENV    C  C  +      L
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 195 EEHVKSH 201
             H++  
Sbjct: 62  GVHLRKQ 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAA-THDLQKKYKCKLCARMYRYKWNLKAHL-KMHKGP 149
           E+ ++C +C   F     ++ H+     +   K+ C  C  +   K +L  HL K H   
Sbjct: 13  EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72

Query: 150 K 150
            
Sbjct: 73  G 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 235 FKCKKCLKVFSDEIKFHLHGRAH----AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 290
           ++C  C   F+      +H           + C  C+   A +  +  H R  H+     
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 106 HKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKS 165
              +  R        +++YKC  C + + +  +L  H + H G K + C +C KAF  +S
Sbjct: 2   SSGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60

Query: 166 NLSKHVRHH 174
           +L  H R H
Sbjct: 61  HLIGHHRVH 69

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           K Y C  C + +     L  H ++H G K + C +C KAFS  S L  H R H
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 139 LKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM-ENVKQCKICLEIFEDDEVLEEH 197
                 +H G K + C +C KAFS  S L +H R H  E   +C  C + F  +  L  H
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

Query: 198 VKSH 201
            + H
Sbjct: 62  QRIH 65

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 140 KAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVK 199
            +     +  +++ C  C+   S       H R    N   C  C   F   E+ +EH  
Sbjct: 5   SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHES 63

Query: 200 SHQNRRFKCPCCERIFTSETRMRNHIDMKHADENL 234
             + ++  C  C R F S   +  H    H   N+
Sbjct: 64  KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 231 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAY 290
           ++ +++C+ C    S  ++   H R       C  C  RF + ++ ++H      +    
Sbjct: 13  NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES--KCEYKKL 70

Query: 291 VCNYCYDSFETKSTLVDH 308
            C  C  +F++  ++  H
Sbjct: 71  TCLECMRTFKSSFSIWRH 88

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 287 EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSC---FTCP 343
           ++ Y C  C     +      H     N  +C +C L F   +  + HE        TC 
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCL 73

Query: 344 FCQRKYKIEKHLEKHIES 361
            C R +K    + +H   
Sbjct: 74  ECMRTFKSSFSIWRHQVE 91

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQ 180
           ++ Y+C+LC           +H ++ +      C  C   F       +H          
Sbjct: 14  KEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71

Query: 181 CKICLEIFEDDEVLEEHVKSHQNRRFKCPC 210
           C  C+  F+    +  H     N+    P 
Sbjct: 72  CLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 4/95 (4%)

Query: 194 LEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLH 253
                       ++C  C    +S     +H   +    N   C  C   F        H
Sbjct: 5   SSGASPVENKEVYQCRLCNAKLSSLLEQGSH---ERLCRNAAVCPYCSLRFFSPELKQEH 61

Query: 254 GRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKE 287
                 K   C EC + F +   + +H    HN+ 
Sbjct: 62  ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHH 174
           + + C++C R +  + +LK H + H   K + C  C++AF+ +  L +H  + H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 97  CEMCPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTC 154
            E C K+F   + ++ H   +H  Q  Y+C    C + +     LK H K+H G      
Sbjct: 6   FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64

Query: 155 AQCDKAFSLKSNLSKHVRH 173
             C       +   KHV  
Sbjct: 65  DSCSFVGKTWTLYLKHVAE 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 69/448 (15%), Positives = 132/448 (29%), Gaps = 127/448 (28%)

Query: 36  QDTKQYPAFRNGSFYIRADIEQPKVKVEHETIMSYARRQVEYEQEQQIPAQGKSIQERKF 95
              K         F++  +++        ET++         E  Q++  Q         
Sbjct: 172 LSYKVQCKMDFKIFWL--NLKNCN---SPETVL---------EMLQKLLYQ--------I 209

Query: 96  KCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYK-------WNLKAHLKMHKG 148
                 +S DH SNI+      H +Q + +  L ++ Y           N K        
Sbjct: 210 DPNWTSRS-DHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNA--- 261

Query: 149 PKIFTCAQC-------DK--AFSLKSNLSKHVR--------HHMENVKQCKICLEIFEDD 191
              F    C        K     L +  + H+            E        L+    D
Sbjct: 262 ---FN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 192 ---EVLEEH----------VKSHQNR--RFKCPCCERIFTSETRMRNHIDMKHADENLFK 236
              EVL  +          ++        +K   C+++    T + + +++    E   K
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAE-YRK 373

Query: 237 CKKCLKVFSDEIKF----------------------HLHGRAHAKFYRCSECEKRFATED 274
               L VF                             LH  +  +       E   +   
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPS 430

Query: 275 I---MRQHFRNY---HNK-EDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPD 327
           I   ++    N    H    D Y     +DS +     +D +F+    ++ +H       
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHL------ 481

Query: 328 EKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCR-YCQRMFR 386
            KN+ + E  + F   F   ++ +E+   K        N + ++L TLQ+ + Y   +  
Sbjct: 482 -KNIEHPERMTLFRMVFLDFRF-LEQ---KIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 387 NEDKLTAHELSHTMEKTFYRNVATVSVC 414
           N+ K     L + +   F   +    +C
Sbjct: 537 NDPKY--ERLVNAILD-FLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 37/302 (12%), Positives = 77/302 (25%), Gaps = 79/302 (26%)

Query: 16  ALKHSIADHIQT-EHMGNPKHQDT------KQYPA-FRNGSFYIRADIEQPKVKVEHETI 67
                        +H+   K             PA +R    + R  +  P   +    +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILL 392

Query: 68  MSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK 127
                  ++ +                   ++   S   K   +    +   +  + K K
Sbjct: 393 SLIWFDVIKSDVMV-------------VVNKLHKYSLVEKQP-KESTISIPSIYLELKVK 438

Query: 128 LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSK---------HVRHHMENV 178
           L         N  A   +H+   I       K F    +L           H+ HH++N+
Sbjct: 439 LE--------NEYA---LHR--SIVDHYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 179 KQC-KICL--EIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSET-----RMRNHIDMKHA 230
           +   ++ L   +F D   LE+ +     R              T       + +I     
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKI-----RHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 231 DENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNK--ED 288
                      ++ +  + F L  +                  D++R           E+
Sbjct: 540 KYE--------RLVNAILDF-LP-KIEENLICSKYT-------DLLRIALMAEDEAIFEE 582

Query: 289 AY 290
           A+
Sbjct: 583 AH 584

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 123 KYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           KY C+ C    +    LK H++ H   + + C  C+ +F  K NL+KH++  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 94  KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK 150
           K+ CE C       S +++H+  TH   + Y C  C   ++ K NL  H+K     K
Sbjct: 1   KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 106 HKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSL 163
           H  N   +        + Y C +  C R +     L  H+++H G K F C  C + FS 
Sbjct: 4   HPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR 61

Query: 164 KSNLSKHVRHH 174
             +L+ H+R H
Sbjct: 62  SDHLTTHIRTH 72

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 117 THDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVR 172
                + + C    C + Y    +LKAH + H G K F+C+   C++ F+    LS+H R
Sbjct: 11  DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70

Query: 173 HH 174
            H
Sbjct: 71  TH 72

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 3/123 (2%)

Query: 163 LKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMR 222
           + S   K++ +H        + LE  +    L    K       K          E+   
Sbjct: 6   VDSGSKKYLSNH--KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63

Query: 223 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRN 282
             + +     + F C  CL  FS  +    H R       C  C+K F + D    H   
Sbjct: 64  YRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK 122

Query: 283 YHN 285
            HN
Sbjct: 123 KHN 125

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSH 201
            L   K    F C  C   FS   +L +H+R+  E+ K C +C + F   +   +HV   
Sbjct: 65  RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKK 123

Query: 202 QNR 204
            N 
Sbjct: 124 HNI 126

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 64  HETIMSYARRQVEYEQEQQIPAQGKSIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK 123
           H+ I  +   +      Q  P Q + I+         P+  D  S + R +A+      +
Sbjct: 17  HKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA--ISQ 74

Query: 124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR 172
           + C LC   +    +LK H++  +  K   C  C K F+   +   HV 
Sbjct: 75  FVCPLCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVC 121

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                  G K + C QC KAFS K +L  H+R H
Sbjct: 1   GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C +C   FS   +L KH+R H
Sbjct: 2   SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + CA+C KAF+++SNL KH + H
Sbjct: 2   SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G   F C++C K F+ K+NL  H + H
Sbjct: 2   SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C+ C KAF+ KS L  H + H
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 9/34 (26%), Positives = 11/34 (32%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                  G K + C  C   F     L  H+R H
Sbjct: 1   GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C  C K+F  K NL  H R H
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +        K + C  C K ++ + NL  H R H
Sbjct: 2   SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K++ C +C K+FS    L KH R H
Sbjct: 2   SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C+QC K FSLKS L  H R H
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + CA+C KAF+ +SNL  H + H
Sbjct: 2   SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C+ C K+F+ KS L  H + H
Sbjct: 2   SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 138 NLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH 197
           +     K+H G +   C++C   F  +S LS+           C+ C +    +  L + 
Sbjct: 5   SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP------MCEKCRKDSCQEAALNKD 58

Query: 198 VKSH 201
             + 
Sbjct: 59  EGNE 62

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKM-HKGPKIFTCAQCDKAFS 162
           ++  + K Y C+ C + +    +L  H+K  H   +   C       S
Sbjct: 5   SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLC 129
            + + C+ C K F    ++  H+   H  ++ +KC++ 
Sbjct: 10  GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C++C KAF+ KSNL  H R H
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C +C KAF+ KS LS H + H
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                   K   C +C + F+LKS+L++H R H
Sbjct: 3   SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF+ KSNL  H R H
Sbjct: 2   SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
             +   G K F C  CD++FS   +L+ H + HM
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K+F C +C K F+  S+L+ H R H
Sbjct: 2   SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G   + C+QC+K+FS K  L  H R H
Sbjct: 2   SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G + + C  C KAF+ +SNL KH + H
Sbjct: 2   SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C++C KAFS KS L  H+R H
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K ++ K NL  H + H
Sbjct: 2   SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF  KS L  H R H
Sbjct: 2   SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K F CA+C K+FS+ S L+ H R H
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K ++C  C KAF L ++L++H+R H
Sbjct: 3   SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
             G   + C QC K+F+ + +L+ H R  
Sbjct: 6   SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K+F   S L KH R H
Sbjct: 2   SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K +  + +L  H R H
Sbjct: 2   SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
             G K F C+ C+KAFS KS L  H + H
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C+ C K+F  KS L  H R H
Sbjct: 2   SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G + + C++C KAF  KS LS H R H
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C +C K FS +S L+ H + H
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
                 G K  TC +C K F   S L  H R HM
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C +C K F   S    H R H
Sbjct: 2   SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF+ K+NL++H R H
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C  C K+F  +S L++H   H
Sbjct: 2   SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +CD  FS  S+L  H   H
Sbjct: 2   SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C  C K+F   S+L+ H R H
Sbjct: 2   SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C  C KAFS    L++H R H
Sbjct: 2   SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C+ C K+F+ KS L  H + H
Sbjct: 3   SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K FS KS LS H R H
Sbjct: 2   SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G +   C+ C K F   SN  +H R H
Sbjct: 3   SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G + + C++C KAF+ KS L  H R H
Sbjct: 3   SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C+ C KAFS + +LS H R H
Sbjct: 3   SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF   S L +H R H
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C  C KAF L + L +H R H
Sbjct: 3   SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K+F  KS+L++H R H
Sbjct: 2   SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C  C   F   ++L  HV  H
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K F  + +L  H   H
Sbjct: 2   SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF  KS L  H R H
Sbjct: 2   SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C QC KAFS++S+L+ H   H
Sbjct: 3   SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K   C +C K+FS  S L  H R H
Sbjct: 3   SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K F C +C K+++ + +L++H R H
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C  C KAFS  ++L++H R H
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAFS+ S+L+ H   H
Sbjct: 2   SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C  C KAF+ K++L++H + H
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G + + C +C KAF  KS+L  H R H
Sbjct: 3   SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAFS  S L++H R H
Sbjct: 2   SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K F C +C K F+  S L  H R H
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C +C KAF  +S+L+ H   H
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K   C +C KAF  KS L  H R H
Sbjct: 2   SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G   F C++CD+ F+ ++ L +H R H
Sbjct: 2   SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 20/83 (24%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI 151
           +     + C ++F     +  H+   H    +    +C       W              
Sbjct: 23  QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------YWE------------- 63

Query: 152 FTCAQCDKAFSLKSNLSKHVRHH 174
             C +  K+F  K  L  H+R H
Sbjct: 64  -ECPREGKSFKAKYKLVNHIRVH 85

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C +C KAFS  S L++H R H
Sbjct: 3   SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K F C +C K F+  S+L  H R H
Sbjct: 3   SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G   + C +C KAFS K  L  H R H
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C K F+  S+L+ H R H
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
                 G K + C +C K F   S LS+H R H
Sbjct: 3   SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K F C +C KAF    +L+ H+R H
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF   SNL+ H   H
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 141 AHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +      G K + C +C KAF   S+ ++H R H
Sbjct: 2   SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.83
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.7
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.69
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.67
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.66
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.65
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.65
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.64
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.63
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.63
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.61
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.6
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.59
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.58
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.55
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.54
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.52
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.51
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.5
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.49
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.47
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.47
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.46
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.44
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.4
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.39
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.39
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.39
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.37
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.37
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.37
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.36
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.34
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.33
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.31
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.31
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.31
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.29
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.29
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.28
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.28
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.27
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.26
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.26
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.24
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.24
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.23
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.22
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.21
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.21
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.18
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.15
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.12
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.1
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.1
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.02
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.01
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.99
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.99
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.98
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.98
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.96
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.94
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.93
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.92
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.91
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.9
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.9
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.89
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.89
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.89
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.89
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.89
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.88
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.88
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.88
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.88
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.88
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.87
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.87
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.86
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.86
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.85
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.85
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.84
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.83
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.81
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.81
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.81
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.79
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.77
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.76
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.74
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.72
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.71
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.7
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.7
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.69
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.68
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.67
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.66
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.64
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.64
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.64
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.63
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.61
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.61
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.6
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.6
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.58
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.57
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.56
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.55
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.54
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.53
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.48
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.47
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.43
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.4
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.39
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.38
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.37
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.35
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.34
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.32
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.32
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.31
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.28
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.27
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.27
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.26
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.25
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.57
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.23
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.22
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.21
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.2
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.19
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.44
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.14
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.12
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.11
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.1
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.27
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.01
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.0
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.97
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.95
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.89
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.89
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.89
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.86
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.83
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.79
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.0
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.76
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.75
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.74
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.71
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.86
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.68
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.68
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.85
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.67
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.65
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.62
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.61
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.6
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.5
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.19
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.11
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.89
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.57
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.4
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.82
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.79
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.43
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.86
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.81
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.69
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.82
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.12
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.34
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	84.91
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	84.89
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	82.52
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	82.49

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=1.3e-35  Score=251.64  Aligned_cols=167  Identities=32%  Similarity=0.613  Sum_probs=92.5

Q ss_pred             CCCCCceecccccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHH
Q psy3231         229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLV  306 (420)
Q Consensus       229 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~  306 (420)
                      |.++++|.|++|++.|.+...|..|++.|.  ++|.|++|++.|.+...|..|++. |.++++|.|++|++.|.+...|.
T Consensus        16 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~   94 (190)
T 2i13_A           16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLR   94 (190)
T ss_dssp             ---------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHH-HHCCCCEECTTTCCEESCHHHHH
T ss_pred             cCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHh-cCCCCCccCcccCCccCCHHHHH
Confidence            344444444444444444444444444442  344444444444444444444443 44444444444444444444444


Q ss_pred             HHHhhC--CCcccCCccCCcCCCchhhhcccC----CCcccccccccccCChhHHHHHHHHhhccCCccccccccccccc
Q psy3231         307 DHFFHH--GNPYMCNHCFLMFPDEKNLRNHEC----TSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY  380 (420)
Q Consensus       307 ~H~~~h--~~~~~C~~C~~~f~~~~~l~~H~~----~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~  380 (420)
                      .|++.|  ..+|.|++|++.|.+...|..|+.    .+||.|++|++.|.....|..|+++        +.++++|+|++
T Consensus        95 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~--------H~~~~~~~C~~  166 (190)
T 2i13_A           95 AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT--------HTGEKPYKCPE  166 (190)
T ss_dssp             HHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH--------HHCCCCEECTT
T ss_pred             HHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHh--------cCCCCCeECCC
Confidence            444444  134445555555444444444432    3678899999999999999999998        66678899999


Q ss_pred             cccccCChhHHHHHHhhhcCCccc
Q psy3231         381 CQRMFRNEDKLTAHELSHTMEKTF  404 (420)
Q Consensus       381 C~~~f~~~~~l~~H~~~H~~~~~~  404 (420)
                      |+++|.+..+|..|+++|+|++||
T Consensus       167 C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          167 CGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             TCCEESSHHHHHHHHTTC------
T ss_pred             CCCccCCHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.8e-34  Score=243.33  Aligned_cols=179  Identities=32%  Similarity=0.652  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHhcC-CCCCcchhhh
Q psy3231         108 SNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHME-NVKQCKICLE  186 (420)
Q Consensus       108 ~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~C~~  186 (420)
                      ..|..|+. .|.++++|.|++|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.|.+ ++|.|++|++
T Consensus         7 ~~l~~h~~-~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   85 (190)
T 2i13_A            7 SSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGK   85 (190)
T ss_dssp             -------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             ccchhhhh-hcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCC
Confidence            44556655 566667777777777777777777777777777777777777777777777777766653 2455555555


Q ss_pred             ccCCHHHHHHHHHhhC-CCccccCCCccccCCHHHHHccccccCCCCCceecccccccccChHHHHHHhhccC--CCccC
Q psy3231         187 IFEDDEVLEEHVKSHQ-NRRFKCPCCERIFTSETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRC  263 (420)
Q Consensus       187 ~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C  263 (420)
                      .|.+...|..|++.|. +++|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|+++|.  ++|.|
T Consensus        86 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C  164 (190)
T 2i13_A           86 SFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC  164 (190)
T ss_dssp             EESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEEC
T ss_pred             ccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeEC
Confidence            5555555555555443 445555555555555555555552 2444444444444444444444444444332  34444


Q ss_pred             cchhhcCCCHHHHHHHHHhhcCCCCc
Q psy3231         264 SECEKRFATEDIMRQHFRNYHNKEDA  289 (420)
Q Consensus       264 ~~C~~~f~~~~~l~~H~~~~H~~~~~  289 (420)
                      ++|++.|.+...|..|+++ |.+++|
T Consensus       165 ~~C~~~f~~~~~L~~H~~~-H~~~k~  189 (190)
T 2i13_A          165 PECGKSFSRRDALNVHQRT-HTGKKT  189 (190)
T ss_dssp             TTTCCEESSHHHHHHHHTT-C-----
T ss_pred             CCCCCccCCHHHHHHHHHh-cCCCCC
Confidence            4444444444444444443 444433

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=3.9e-28  Score=205.50  Aligned_cols=166  Identities=25%  Similarity=0.546  Sum_probs=111.3

Q ss_pred             CccCCcccc--ccCccccCCHHHHHHHHHHhcCCCCcccc--ccccccccCchHHHHHHhhccCCCccccc--ccccccc
Q psy3231          89 SIQERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKC--KLCARMYRYKWNLKAHLKMHKGPKIFTCA--QCDKAFS  162 (420)
Q Consensus        89 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~  162 (420)
                      ....++|.|  +.|++.|.+...|..|++ .|.++++|.|  +.|++.|.+...|..|++.|.++++|.|.  .|++.|.
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHH-HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEES
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHH-hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccC
Confidence            345677888  678888888888888887 6777788888  77888888888888888888888888888  7888888


Q ss_pred             ChHHHHHHH-HHhcCCCCCcchhhhccCCHHHHHHHHHhhCCCcccc--CCCccccCCHHHHHccccccCCCCCceeccc
Q psy3231         163 LKSNLSKHV-RHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKC--PCCERIFTSETRMRNHIDMKHADENLFKCKK  239 (420)
Q Consensus       163 ~~~~l~~H~-~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  239 (420)
                      +...|..|+ +.|..                         .+++|.|  +.|++.|.+...|..|++ .|.++++|.|++
T Consensus        86 ~~~~l~~H~~~~h~~-------------------------~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~  139 (190)
T 1tf6_A           86 TKANMKKHFNRFHNI-------------------------KICVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPH  139 (190)
T ss_dssp             CHHHHHHHHHTTSST-------------------------TTSCCEECSSSSCEECSSHHHHHHHHG-GGSSSCSSBCCS
T ss_pred             CHHHHHHHHHHhcCC-------------------------CcceeeCCCCCCccccCCHHHHHHHHH-HhCCCCCccCCC
Confidence            888888887 33321                         1234555  555555555555655653 355555555544


Q ss_pred             --ccccccChHHHHHHhhccCCCccCcc---hhhcCCCHHHHHHHHHh
Q psy3231         240 --CLKVFSDEIKFHLHGRAHAKFYRCSE---CEKRFATEDIMRQHFRN  282 (420)
Q Consensus       240 --C~~~f~~~~~l~~H~~~h~~~~~C~~---C~~~f~~~~~l~~H~~~  282 (420)
                        |++.|.+...|..|+++|.. |.|+.   |++.|.+...|..|+++
T Consensus       140 ~~C~k~F~~~~~L~~H~~~H~~-~~C~~~~~C~~~f~~~~~l~~H~~~  186 (190)
T 1tf6_A          140 EGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGKTWTLYLKHVAE  186 (190)
T ss_dssp             SSCCCBCSSHHHHHHHHTSSCS-CCCCSTTTCCCCCSCHHHHHHHHTT
T ss_pred             CCCCchhcCHHHHHHHHHHhCC-CcCCCCCcCCCccccHHHHHHHHHh
Confidence              55555555555555555544 55555   66666666666666655

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=7.2e-28  Score=203.83  Aligned_cols=162  Identities=25%  Similarity=0.375  Sum_probs=137.5

Q ss_pred             Cccccce--eehhhhhhhhhh-hhhhhccCCCCCccCCcccc--ccCccccCCHHHHHHHHHHhcCCCCccccc--cccc
Q psy3231          59 KVKVEHE--TIMSYARRQVEY-EQEQQIPAQGKSIQERKFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCK--LCAR  131 (420)
Q Consensus        59 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~  131 (420)
                      ..+.+.|  ..|++.|..... ..|+..     +.++++|.|  +.|++.|.+...|..|++ .|.++++|.|+  .|++
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~-----h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~   82 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCK-----HTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDL   82 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHH-----HHCCCSSCCSSTTCCCCCSSHHHHHHHHT-TTTTCCCEECCSSSCCC
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHh-----cCCCCCccCCCCCCChhhCCHHHHHHHHH-HccCCCceeCCCCCCCC
Confidence            4556777  689998877766 677766     667889999  889999999999999998 88899999999  8999


Q ss_pred             cccCchHHHHHH-hhc-cCCCcccc--ccccccccChHHHHHHHHHhcC-CCCCcch--hhhccCCHHHHHHHHHhhCCC
Q psy3231         132 MYRYKWNLKAHL-KMH-KGPKIFTC--AQCDKAFSLKSNLSKHVRHHME-NVKQCKI--CLEIFEDDEVLEEHVKSHQNR  204 (420)
Q Consensus       132 ~f~~~~~l~~H~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~-~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  204 (420)
                      .|.+...|..|+ +.| .++++|.|  +.|++.|.+...|..|++.|.+ ++|.|+.  |++.|.+...|..|+++|.+ 
T Consensus        83 ~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~-  161 (190)
T 1tf6_A           83 RFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-  161 (190)
T ss_dssp             EESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS-
T ss_pred             ccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC-
Confidence            999999999999 666 46789999  8999999999999999999875 4788877  88888888888888887766 


Q ss_pred             ccccCC---CccccCCHHHHHcccccc
Q psy3231         205 RFKCPC---CERIFTSETRMRNHIDMK  228 (420)
Q Consensus       205 ~~~C~~---C~~~f~~~~~l~~H~~~~  228 (420)
                       |.|+.   |++.|.+...|..|++.+
T Consensus       162 -~~C~~~~~C~~~f~~~~~l~~H~~~h  187 (190)
T 1tf6_A          162 -YPCKKDDSCSFVGKTWTLYLKHVAEC  187 (190)
T ss_dssp             -CCCCSTTTCCCCCSCHHHHHHHHTTC
T ss_pred             -CcCCCCCcCCCccccHHHHHHHHHhh
Confidence             77877   888888888888887543

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.9e-25  Score=182.41  Aligned_cols=145  Identities=20%  Similarity=0.439  Sum_probs=107.1

Q ss_pred             CccccCCCccccCCHHHHHccccc--cCCCCCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHH
Q psy3231         204 RRFKCPCCERIFTSETRMRNHIDM--KHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFR  281 (420)
Q Consensus       204 ~~~~C~~C~~~f~~~~~l~~H~~~--~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~  281 (420)
                      .+|.|+.|++.|.+...|..|++.  .|.++++|.|++|+                     |+.|++.|.+...|..|++
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~---------------------C~~c~~~f~~~~~l~~H~~   60 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------CSRELRPFKAQYMLVVHMR   60 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT---------------------CTTTTCCCSSHHHHHHHTH
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC---------------------ccchhhhhhhHHHHHHHHH
Confidence            356666666666666666666642  35556666666552                     5666777888888888877


Q ss_pred             hhcCCCCcccccc--chhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCCCcccccc--cccccCChhHHHH
Q psy3231         282 NYHNKEDAYVCNY--CYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPF--CQRKYKIEKHLEK  357 (420)
Q Consensus       282 ~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~~~~C~~--C~~~f~~~~~l~~  357 (420)
                      . |.+++||.|++  |++.|.+...|..|++.|.+                      .++|.|++  |++.|.+...|..
T Consensus        61 ~-h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----------------------~~~~~C~~~~C~~~f~~~~~L~~  117 (155)
T 2gli_A           61 R-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG----------------------EKPYMCEHEGCSKAFSNASDRAK  117 (155)
T ss_dssp             H-HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTT----------------------CCCEECCSTTCCCEESSSSTTHH
T ss_pred             h-cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCC----------------------CCCeeCCCCCCCCccCCHHHHHH
Confidence            6 67777788875  88888888888888777632                      24567776  8888888888888


Q ss_pred             HH-HHhhccCCccccccccccccc--cccccCChhHHHHHHhhhcC
Q psy3231         358 HI-ESCIQLNPTTTVLKTLQKCRY--CQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       358 H~-~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~  400 (420)
                      |+ +.        +.++++|.|++  |+++|.+.++|..|+++|+|
T Consensus       118 H~~~~--------H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          118 HQNRT--------HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHT--------TCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             HHHHh--------cCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            88 54        67778899988  99999999999999998876

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=1.1e-23  Score=172.02  Aligned_cols=139  Identities=24%  Similarity=0.590  Sum_probs=89.6

Q ss_pred             CccccccCccccCCHHHHHHHHHH--hcCCCCcccccccc-----ccccCchHHHHHHhhccCCCcccccc--ccccccC
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMAA--THDLQKKYKCKLCA-----RMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSL  163 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~--~h~~~~~~~C~~C~-----~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~  163 (420)
                      .+|.|+.|++.|.+...|..|++.  .|.++++|.|++|+     +.|.+...|..|++.|.++++|.|++  |++.|.+
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   81 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR   81 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC
Confidence            467888888888888888888874  46677788877543     55666666666666666555566653  5555555


Q ss_pred             hHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHHHHhhCCCccccCC--CccccCCHHHHHccccccCCCCCceeccc--
Q psy3231         164 KSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCKK--  239 (420)
Q Consensus       164 ~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--  239 (420)
                      ...|..|++.|.+                          +++|.|+.  |++.|.+...|..|+...|.++++|.|++  
T Consensus        82 ~~~l~~H~~~h~~--------------------------~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~  135 (155)
T 2gli_A           82 LENLKTHLRSHTG--------------------------EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG  135 (155)
T ss_dssp             HHHHHHHHHHTTT--------------------------CCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTT
T ss_pred             HHHHHHHHHHcCC--------------------------CCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCC
Confidence            5555555555442                          45566665  66666666666666544466666666666  


Q ss_pred             ccccccChHHHHHHhhcc
Q psy3231         240 CLKVFSDEIKFHLHGRAH  257 (420)
Q Consensus       240 C~~~f~~~~~l~~H~~~h  257 (420)
                      |++.|.+...|..|++.|
T Consensus       136 C~~~f~~~~~L~~H~~~h  153 (155)
T 2gli_A          136 CTKRYTDPSSLRKHVKTV  153 (155)
T ss_dssp             TCCEESSHHHHHHHHHHS
T ss_pred             CccccCCHHHHHHHHHhh
Confidence            666666666666666654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=6.3e-22  Score=154.99  Aligned_cols=117  Identities=24%  Similarity=0.499  Sum_probs=98.1

Q ss_pred             CCCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCC
Q psy3231         258 AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECT  337 (420)
Q Consensus       258 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~  337 (420)
                      .++|.|++|++.|.+...|..|++. |.++++|.|++|++.|.+...|..|++.|.                   .|...
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~-------------------~~~~~   64 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNC-------------------MNRSE   64 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHHHHHHH-HSSCCSCBCTTTCCBCSSHHHHHHHHHHCC-------------------CCSCC
T ss_pred             CCCCCCCCCCCcCCCHHHHHHHHHh-CCCCCCeECCCCCchhcCHHHHHHHHhhhh-------------------cCCCC
Confidence            3678888888888888899999886 778888999999999999999999987642                   12234


Q ss_pred             CcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHh-hhcCCc
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHEL-SHTMEK  402 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~  402 (420)
                      ++|.|++|++.|.....|..|++.        +.++++|.|++|++.|.+...|..|++ .|.+++
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVS--------HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH--------HSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH--------cCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            678899999999999999999988        667788999999999999999999997 677654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=4.1e-22  Score=162.55  Aligned_cols=119  Identities=25%  Similarity=0.392  Sum_probs=98.5

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCCCc--------cccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchh
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDA--------YVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKN  330 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~  330 (420)
                      .+|.|++|++.|.+...|..|++..|.++.+        |.|++|++.|.+...|..|++.|.                 
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-----------------   86 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-----------------   86 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-----------------
T ss_pred             cccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-----------------
Confidence            5688888888888888888888876777655        678888888888888888876652                 


Q ss_pred             hhcccCCCcccccc--cccccCChhHHHHHHHHhhccCCccccccccccccc--cccccCChhHHHHHHhhhcCCccccc
Q psy3231         331 LRNHECTSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY--CQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       331 l~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                           ..++|.|.+  |++.|.....|..|++.        +.++++|.|.+  |++.|.+...|..|+++|++++||.|
T Consensus        87 -----~~~~~~C~~~~C~~~f~~~~~L~~H~~~--------h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A           87 -----GEKPFPCPFPGCGKIFARSENLKIHKRT--------HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             -----CCCSEECSCTTTCCEESCHHHHHHHHTT--------TCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             -----CCCcccCCcCCCCCccCCHHHHHHHHHh--------hCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCC
Confidence                 125677777  88888888889999886        67778999998  99999999999999999999999998


Q ss_pred             c
Q psy3231         407 N  407 (420)
Q Consensus       407 ~  407 (420)
                      .
T Consensus       154 ~  154 (155)
T 2rpc_A          154 S  154 (155)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=5.3e-22  Score=155.41  Aligned_cols=115  Identities=26%  Similarity=0.567  Sum_probs=92.3

Q ss_pred             CCccCc--chhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccC
Q psy3231         259 KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHEC  336 (420)
Q Consensus       259 ~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~  336 (420)
                      ++|.|+  .|++.|.+...|..|++. | ++++|.|++|++.|.+...|..|++.|.+                      
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~----------------------   59 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHT-H-GPRVHVCAECGKAFVESSKLKRHQLVHTG----------------------   59 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGG-G-SCCCEECTTTCCEESSHHHHHHHGGGTSC----------------------
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHH-c-CCCCeECCCCCchhCCHHHHHHHHHHcCC----------------------
Confidence            578888  799999888889999876 6 77888888898888888888888877632                      


Q ss_pred             CCcccccc--cccccCChhHHHHHHHHhhccCCccccccccccccc--cccccCChhHHHHHHhhhcCCcccc
Q psy3231         337 TSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY--CQRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       337 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                      .++|.|++  |++.|.....|..|++.        +.++++|.|++  |+++|.+.++|..|+++|+++++++
T Consensus        60 ~~~~~C~~~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           60 EKPFQCTFEGCGKRFSLDFNLRTHVRI--------HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHH--------HHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHH--------hCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            25677875  99999999999999998        56677899964  9999999999999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=5.8e-22  Score=155.81  Aligned_cols=104  Identities=22%  Similarity=0.380  Sum_probs=90.3

Q ss_pred             ccccccCCCCCceecccccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccC
Q psy3231         223 NHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFE  300 (420)
Q Consensus       223 ~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~  300 (420)
                      .|....|.|+++|.|++|++.|.+...|..|+++|.  +||.|++|++.|.+...|..|+++ |++++||.|++|++.|.
T Consensus        11 ~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~k~F~   89 (133)
T 2lt7_A           11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQCLACGKSFI   89 (133)
T ss_dssp             SEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHH-HHTCCCEEESSSCCEES
T ss_pred             hhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccc-cCCCccccCCCCCCCcC
Confidence            455567899999999999999999999999999984  899999999999999999999987 99999999999999999


Q ss_pred             ChhHHHHHHhhC-C-C------cccCCccCCcCCC
Q psy3231         301 TKSTLVDHFFHH-G-N------PYMCNHCFLMFPD  327 (420)
Q Consensus       301 ~~~~l~~H~~~h-~-~------~~~C~~C~~~f~~  327 (420)
                      +...|..|++.| + .      +|.|.+|++.|..
T Consensus        90 ~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           90 NYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             SHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             CHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            999999999876 2 2      3555555555543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=4.7e-21  Score=149.95  Aligned_cols=109  Identities=26%  Similarity=0.510  Sum_probs=69.2

Q ss_pred             ccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhh---ccCCCccccccccccccChHH
Q psy3231          90 IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKM---HKGPKIFTCAQCDKAFSLKSN  166 (420)
Q Consensus        90 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~~~~~  166 (420)
                      .++++|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|++.   +.++++|.|++|++.|.+...
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~   81 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME   81 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHH
Confidence            34566777777777777777777776 56666777777777777777777777764   355666666666666666666


Q ss_pred             HHHHHHHhcC-CCCCcchhhhccCCHHHHHHHHH
Q psy3231         167 LSKHVRHHME-NVKQCKICLEIFEDDEVLEEHVK  199 (420)
Q Consensus       167 l~~H~~~h~~-~~~~C~~C~~~f~~~~~l~~H~~  199 (420)
                      |..|++.|.+ ++|.|++|++.|.+...|..|++
T Consensus        82 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             HHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccCCCccchhCCHHHHHHHHH
Confidence            6666666553 24444444444444444444443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=6.6e-21  Score=147.97  Aligned_cols=110  Identities=31%  Similarity=0.610  Sum_probs=95.0

Q ss_pred             cCCcccccc--CccccCCHHHHHHHHHHhcCCCCccccc--cccccccCchHHHHHHhhccCCCccccccccccccChHH
Q psy3231          91 QERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSN  166 (420)
Q Consensus        91 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  166 (420)
                      ++++|.|+.  |++.|.+...|..|++ .|.++++|.|+  .|++.|.+...|..|++.|.++++|.|++|++.|.+...
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHH-hhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            567899987  9999999999999988 67778899998  699999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CCCCc--chhhhccCCHHHHHHHHHhh
Q psy3231         167 LSKHVRHHME-NVKQC--KICLEIFEDDEVLEEHVKSH  201 (420)
Q Consensus       167 l~~H~~~h~~-~~~~C--~~C~~~f~~~~~l~~H~~~h  201 (420)
                      |..|++.|.+ ++|.|  +.|++.|.+...|..|+++|
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999988875 47888  67888888888888887764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.83  E-value=2.9e-21  Score=151.78  Aligned_cols=87  Identities=24%  Similarity=0.540  Sum_probs=79.8

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHH
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLS  168 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  168 (420)
                      +.|+++|.|++|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|+++|.+++||.|++|++.|.+...|.
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~   95 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMS   95 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHH-HHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHH
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHH-HcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHH
Confidence            567889999999999999999999988 7888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy3231         169 KHVRHHME  176 (420)
Q Consensus       169 ~H~~~h~~  176 (420)
                      .|++.|++
T Consensus        96 ~H~~~hh~  103 (133)
T 2lt7_A           96 SHIKSVHS  103 (133)
T ss_dssp             HHHHHHTC
T ss_pred             HHhHHhcC
Confidence            99988764

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=153.47  Aligned_cols=121  Identities=24%  Similarity=0.510  Sum_probs=85.3

Q ss_pred             cCCccccccCccccCCHHHHHHHHHHhcCCCCc--------cccccccccccCchHHHHHHhhccCCCcccccc--cccc
Q psy3231          91 QERKFKCEMCPKSFDHKSNIRRHMAATHDLQKK--------YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKA  160 (420)
Q Consensus        91 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~  160 (420)
                      ...+|.|..|++.|.+...|..|++..|.+..+        |.|++|++.|.+...|..|++.|.++++|.|.+  |++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence            456789999999999999999998865776654        667777777777777777777777777777766  7776


Q ss_pred             ccChHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHHHHhhCCCccccCC--CccccCCHHHHHccccccCCCCCceecc
Q psy3231         161 FSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK  238 (420)
Q Consensus       161 f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~  238 (420)
                      |.+...|..|++.|.+                          +++|.|+.  |++.|.+...|..|++ .|.++++|.|.
T Consensus       102 f~~~~~L~~H~~~h~~--------------------------~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~c~  154 (155)
T 2rpc_A          102 FARSENLKIHKRTHTG--------------------------EKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDKSGPSS  154 (155)
T ss_dssp             ESCHHHHHHHHTTTCS--------------------------SCSBCCSSTTCCCCBSSHHHHHHSST-TTTSCCCSCSC
T ss_pred             cCCHHHHHHHHHhhCC--------------------------CCCccCCCCCCCCccCCHHHHHHHHH-HhcCCCCCCCC
Confidence            6666666666665542                          34566665  6666666666666663 46666666653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.82  E-value=6.2e-21  Score=148.13  Aligned_cols=108  Identities=29%  Similarity=0.685  Sum_probs=85.8

Q ss_pred             CCccccCC--CccccCCHHHHHccccccCCCCCceecc--cccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHH
Q psy3231         203 NRRFKCPC--CERIFTSETRMRNHIDMKHADENLFKCK--KCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIM  276 (420)
Q Consensus       203 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l  276 (420)
                      +++|.|+.  |++.|.+...|..|++ .|.++++|.|+  .|++.|.+...|..|++.|.  ++|.|++|++.|.+...|
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   82 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL   82 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHH-hhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHH
Confidence            56778876  8888888888888874 46667778887  68888888888888877764  678888888888888888


Q ss_pred             HHHHHhhcCCCCcccc--ccchhccCChhHHHHHHhhC
Q psy3231         277 RQHFRNYHNKEDAYVC--NYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       277 ~~H~~~~H~~~~~~~C--~~C~~~f~~~~~l~~H~~~h  312 (420)
                      ..|++. |.++++|.|  +.|++.|.+...|..|+++|
T Consensus        83 ~~H~~~-h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           83 KTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHH-HHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHH-hcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            888876 777888888  77888888888888888776

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=3.2e-20  Score=145.22  Aligned_cols=109  Identities=34%  Similarity=0.608  Sum_probs=95.7

Q ss_pred             CCccccc--cCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCcccccc--ccccccChHHH
Q psy3231          92 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNL  167 (420)
Q Consensus        92 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l  167 (420)
                      +++|.|+  .|++.|.+...|..|++ .| ++++|.|++|++.|.+...|..|++.|.++++|.|..  |++.|.+...|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHG-GG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHH-Hc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            4679999  89999999999999998 67 7889999999999999999999999999999999976  99999999999


Q ss_pred             HHHHHHhcC-CCCCcc--hhhhccCCHHHHHHHHHhhC
Q psy3231         168 SKHVRHHME-NVKQCK--ICLEIFEDDEVLEEHVKSHQ  202 (420)
Q Consensus       168 ~~H~~~h~~-~~~~C~--~C~~~f~~~~~l~~H~~~h~  202 (420)
                      ..|++.|.+ ++|.|+  .|++.|.+...|..|+++|.
T Consensus        81 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             HHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             HHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            999998875 478885  48888888888888888876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=2.2e-17  Score=125.03  Aligned_cols=92  Identities=21%  Similarity=0.461  Sum_probs=67.3

Q ss_pred             CCCCccccccchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCCCcccccccccccCChhHHHHHHHHhhc
Q psy3231         285 NKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQ  364 (420)
Q Consensus       285 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  364 (420)
                      .++++|.|++|++.|.+...|..|++.|..                      .++|.|++|++.|.....|..|++.   
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~----------------------~~~~~C~~C~~~f~~~~~l~~H~~~---   67 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTD----------------------ERPYTCDICHKAFRRQDHLRDHRYI---   67 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCC----------------------SCCCBCSSSCCBCSCHHHHHHHGGG---
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCC----------------------CCCcCCCCccchhCCHHHHHHHHHH---
Confidence            345667777777777777777777666531                      2345666666666666677777665   


Q ss_pred             cCCccccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         365 LNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       365 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                           +.++++|+|.+|++.|.+...|..|+++|++++||..
T Consensus        68 -----h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           68 -----HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             -----SCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             -----hCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence                 5566788899999999999999999999999988864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.9e-17  Score=121.98  Aligned_cols=88  Identities=34%  Similarity=0.597  Sum_probs=81.3

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHH
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLS  168 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  168 (420)
                      ..++++|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|++.|.++++|.|.+|++.|.+...|.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   81 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT   81 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGG-GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHH-hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHH
Confidence            456788999999999999999999998 7888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q psy3231         169 KHVRHHMEN  177 (420)
Q Consensus       169 ~H~~~h~~~  177 (420)
                      .|++.|.++
T Consensus        82 ~H~~~h~~~   90 (96)
T 2dmd_A           82 VHLRSHTGD   90 (96)
T ss_dssp             HHHTTCCSC
T ss_pred             HHHHHhcCC
Confidence            999988754

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.1e-17  Score=125.32  Aligned_cols=93  Identities=17%  Similarity=0.340  Sum_probs=84.3

Q ss_pred             cccccCCCCCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChh
Q psy3231         224 HIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKS  303 (420)
Q Consensus       224 H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~  303 (420)
                      ++ ..|.++++|.|++|++.|.+...|..|++.|.++|.|++|++.|.....|..|+ . |.+++||.|++|++.|.+..
T Consensus         7 ~~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~-~-H~~~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A            7 GA-SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE-S-KCEYKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CC-CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHH-H-HCSTGGGEEGGGTEECSSHH
T ss_pred             cC-cccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHH-H-cCCCCCccCccccchhCCHH
Confidence            44 457889999999999999999999999999999999999999999999999998 4 99999999999999999999


Q ss_pred             HHHHHHh-hCC--CcccCC
Q psy3231         304 TLVDHFF-HHG--NPYMCN  319 (420)
Q Consensus       304 ~l~~H~~-~h~--~~~~C~  319 (420)
                      .|..|++ +|.  .+|.+.
T Consensus        84 ~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           84 SIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHcCCCCCCCCC
Confidence            9999997 884  577653

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.69  E-value=8.9e-17  Score=121.66  Aligned_cols=91  Identities=29%  Similarity=0.626  Sum_probs=83.0

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHH
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLS  168 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  168 (420)
                      ...+++|.|..|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|++.|.++++|.|.+|++.|.+...|.
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~   90 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLA   90 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHH-HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHH
Confidence            345788999999999999999999998 7888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC-CCC
Q psy3231         169 KHVRHHMEN-VKQ  180 (420)
Q Consensus       169 ~H~~~h~~~-~~~  180 (420)
                      .|++.|.+. ++.
T Consensus        91 ~H~~~H~~~~~~~  103 (106)
T 2ee8_A           91 VHKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHHTTSCCCCC
T ss_pred             HHHHHhCCCCCCc
Confidence            999998754 443

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=2.7e-17  Score=118.18  Aligned_cols=81  Identities=37%  Similarity=0.754  Sum_probs=74.7

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHH
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRH  173 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  173 (420)
                      ||.|+.|++.|.+...|..|++ .|.++++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.+...|..|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHH-HcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            5889999999999999999998 677888999999999999999999999999999999999999999999999999988


Q ss_pred             hc
Q psy3231         174 HM  175 (420)
Q Consensus       174 h~  175 (420)
                      |.
T Consensus        80 H~   81 (82)
T 2kmk_A           80 HT   81 (82)
T ss_dssp             HC
T ss_pred             hC
Confidence            85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.67  E-value=4.7e-17  Score=119.23  Aligned_cols=85  Identities=28%  Similarity=0.732  Sum_probs=76.6

Q ss_pred             CCccccc--cCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHH
Q psy3231          92 ERKFKCE--MCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSK  169 (420)
Q Consensus        92 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~  169 (420)
                      +++|.|+  .|++.|.+...|..|++ .|.++++|.|++|++.|.+...|..|++.|.++++|.|++|++.|.+...|..
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            5789998  59999999999999988 77788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q psy3231         170 HVRHHMEN  177 (420)
Q Consensus       170 H~~~h~~~  177 (420)
                      |+++|.+.
T Consensus        81 H~~~H~~~   88 (90)
T 1a1h_A           81 HTKIHLRQ   88 (90)
T ss_dssp             HHGGGGC-
T ss_pred             HHHHhccc
Confidence            99988753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.67  E-value=3.6e-17  Score=119.87  Aligned_cols=88  Identities=27%  Similarity=0.529  Sum_probs=67.5

Q ss_pred             CCCccccc--cchhccCChhHHHHHHhhCCCcccCCccCCcCCCchhhhcccCCCcccccccccccCChhHHHHHHHHhh
Q psy3231         286 KEDAYVCN--YCYDSFETKSTLVDHFFHHGNPYMCNHCFLMFPDEKNLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCI  363 (420)
Q Consensus       286 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  363 (420)
                      +++||.|+  .|++.|.+...|..|++.|..                      .++|.|++|++.|.....|..|++.  
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~----------------------~~~~~C~~C~~~f~~~~~l~~H~~~--   56 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTG----------------------QKPFQCRICMRNFSRSDHLTTHIRT--   56 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHC----------------------CCCEECTTTCCEESCHHHHHHHHHH--
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCC----------------------CCCccCCCCCcccCCHHHHHHHHHH--
Confidence            35778887  488888888888888777631                      2457777788888888888888887  


Q ss_pred             ccCCccccccccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         364 QLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       364 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                            +.++++|.|+.|++.|.+.+.|..|+++|+++++
T Consensus        57 ------h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           57 ------HTGEKPFACDICGRKFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             ------HHCCCCEECTTTCCEESSHHHHHHHHGGGGC---
T ss_pred             ------cCCCCCccCCCCCchhCCHHHHHHHHHHhcccCC
Confidence                  5566789999999999999999999999998763

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.1e-16  Score=118.71  Aligned_cols=84  Identities=30%  Similarity=0.551  Sum_probs=65.9

Q ss_pred             CCCCCceecccccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHH
Q psy3231         229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLV  306 (420)
Q Consensus       229 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~  306 (420)
                      +.++++|.|++|++.|.+...|..|++.|.  ++|.|++|++.|.+...|..|++. |.++++|.|++|++.|.+...|.
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~   81 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQICPYASRNSSQLT   81 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHH-SCCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHH-hCCCCCccCCCCCCccCCHHHHH
Confidence            345667777777777777777777777775  678888888888888888888876 77788888888888888888888


Q ss_pred             HHHhhCC
Q psy3231         307 DHFFHHG  313 (420)
Q Consensus       307 ~H~~~h~  313 (420)
                      .|+++|.
T Consensus        82 ~H~~~h~   88 (96)
T 2dmd_A           82 VHLRSHT   88 (96)
T ss_dssp             HHHTTCC
T ss_pred             HHHHHhc
Confidence            8888773

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.4e-16  Score=117.98  Aligned_cols=86  Identities=29%  Similarity=0.629  Sum_probs=74.0

Q ss_pred             ccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCC--CccccccccccccChHHH
Q psy3231          90 IQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP--KIFTCAQCDKAFSLKSNL  167 (420)
Q Consensus        90 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l  167 (420)
                      .++++|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|++.|.++  ++|.|.+|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHH-HSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHH
Confidence            45678999999999999999999987 688888899999999999999999999988886  889999999999999999


Q ss_pred             HHHHH-HhcC
Q psy3231         168 SKHVR-HHME  176 (420)
Q Consensus       168 ~~H~~-~h~~  176 (420)
                      ..|++ .|.+
T Consensus        82 ~~H~~~~H~~   91 (95)
T 2yt9_A           82 NGHIKQVHSG   91 (95)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHhcCC
Confidence            99985 5654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1.9e-17  Score=127.46  Aligned_cols=99  Identities=17%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhh--CC--Cc-ccCCccCCcC--CCchhhhcccCCCcccccccc
Q psy3231         274 DIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFH--HG--NP-YMCNHCFLMF--PDEKNLRNHECTSCFTCPFCQ  346 (420)
Q Consensus       274 ~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~--~~-~~C~~C~~~f--~~~~~l~~H~~~~~~~C~~C~  346 (420)
                      ..|..|++. |.+++||.|++|++.|.+...|..|++.  |.  .+ +.|++|++.|  .....|..|+.          
T Consensus         5 ~~l~~H~~~-H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~----------   73 (115)
T 2dmi_A            5 SSGKLYGSI-FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG----------   73 (115)
T ss_dssp             CCCCCCCCC-CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC----------
T ss_pred             hhhhhheee-eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh----------
Confidence            456778876 8999999999999999999999999988  52  33 3467776666  56666666643          


Q ss_pred             cccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcccc
Q psy3231         347 RKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       347 ~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                                    +        +.++++|.|++|++.|.....|..|+++|+......
T Consensus        74 --------------~--------H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           74 --------------K--------EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             --------------S--------CCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             --------------c--------cCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence                          2        455566777777777777777777777666555443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=6.6e-17  Score=122.56  Aligned_cols=93  Identities=22%  Similarity=0.372  Sum_probs=59.2

Q ss_pred             HhhccCCCccccccccccccChHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHHHHhhC-CCccccCCCccccCCHHHH
Q psy3231         143 LKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQ-NRRFKCPCCERIFTSETRM  221 (420)
Q Consensus       143 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~C~~C~~~f~~~~~l  221 (420)
                      ++.|.++++|.|.+|++.|.+...|..|++.| .++|.|.+|++.|.....|..|+. |. +++|.|+.|++.|.+...|
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H-~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH-HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHH
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC-CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHH
Confidence            34556666666666666666666666666665 245666666666666666666664 44 5666777777777777777


Q ss_pred             HccccccCCCCCceec
Q psy3231         222 RNHIDMKHADENLFKC  237 (420)
Q Consensus       222 ~~H~~~~h~~~~~~~C  237 (420)
                      ..|++..|.++++|.+
T Consensus        86 ~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           86 WRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             HHHHHHTSCCCCCCCC
T ss_pred             HHHHHHHcCCCCCCCC
Confidence            7776545666666654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.1e-16  Score=119.50  Aligned_cols=85  Identities=34%  Similarity=0.718  Sum_probs=80.1

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHH
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLS  168 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  168 (420)
                      +.++++|.| .|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|++.|.++++|.|.+|++.|.+...|.
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH   82 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHH-HcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHH
Confidence            567899999 99999999999999998 7888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy3231         169 KHVRHHM  175 (420)
Q Consensus       169 ~H~~~h~  175 (420)
                      .|++.|.
T Consensus        83 ~H~~~~~   89 (110)
T 2csh_A           83 RHVTSCT   89 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            9998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.64  E-value=1.1e-16  Score=105.91  Aligned_cols=58  Identities=22%  Similarity=0.504  Sum_probs=54.7

Q ss_pred             CCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         337 TSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++||.|++||+.|.....|..|+++        +++++||.|..||++|...+.|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~--------Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA--------HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH--------HHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH--------hCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4799999999999999999999998        788899999999999999999999999999975

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=3.3e-16  Score=115.96  Aligned_cols=83  Identities=30%  Similarity=0.609  Sum_probs=64.5

Q ss_pred             CCCCceecccccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHHHHHHHhhcCCC--CccccccchhccCChhHH
Q psy3231         230 ADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKE--DAYVCNYCYDSFETKSTL  305 (420)
Q Consensus       230 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~~--~~~~C~~C~~~f~~~~~l  305 (420)
                      .++++|.|++|++.|.+...|..|++.|.  ++|.|++|++.|.+...|..|++. |.++  ++|.|++|++.|.+...|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHH-HCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHH-hcCCCCCceECCCccchhCCHHHH
Confidence            35667788888888887778888877775  678888888888888888888877 5554  788888888888888888


Q ss_pred             HHHHh-hCC
Q psy3231         306 VDHFF-HHG  313 (420)
Q Consensus       306 ~~H~~-~h~  313 (420)
                      ..|++ .|.
T Consensus        82 ~~H~~~~H~   90 (95)
T 2yt9_A           82 NGHIKQVHS   90 (95)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHhcC
Confidence            88874 674

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.63  E-value=1.1e-16  Score=115.04  Aligned_cols=78  Identities=32%  Similarity=0.566  Sum_probs=56.8

Q ss_pred             ceecccccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhh
Q psy3231         234 LFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFH  311 (420)
Q Consensus       234 ~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~  311 (420)
                      ||.|++|++.|.+...|..|++.|.  ++|.|++|++.|.+...|..|++. |.++++|.|++|++.|.+...|..|+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHH-HHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHH-hcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            4666667777766666666666653  667777777777777777777776 6677777777787777777777777776


Q ss_pred             C
Q psy3231         312 H  312 (420)
Q Consensus       312 h  312 (420)
                      |
T Consensus        80 H   80 (82)
T 2kmk_A           80 H   80 (82)
T ss_dssp             H
T ss_pred             h
Confidence            6

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=4.2e-17  Score=125.48  Aligned_cols=94  Identities=17%  Similarity=0.298  Sum_probs=83.1

Q ss_pred             HHHHHccccccCCCCCceecccccccccChHHHHHHhhc--cC--CC-ccCcchhhcC--CCHHHHHHHHHhhcCCCCcc
Q psy3231         218 ETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRA--HA--KF-YRCSECEKRF--ATEDIMRQHFRNYHNKEDAY  290 (420)
Q Consensus       218 ~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~--~~-~~C~~C~~~f--~~~~~l~~H~~~~H~~~~~~  290 (420)
                      ...|..|+ ..|.++++|.|++|++.|.+...|..|++.  |.  ++ +.|++|++.|  .....|..|++. |.+++||
T Consensus         4 ~~~l~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~~~~~   81 (115)
T 2dmi_A            4 GSSGKLYG-SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK-EDAQKVL   81 (115)
T ss_dssp             CCCCCCCC-CCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCCCSSC
T ss_pred             chhhhhhe-eeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhc-cCCCcce
Confidence            45678898 568889999999999999999999999998  53  33 4599999999  899999999887 9999999


Q ss_pred             ccccchhccCChhHHHHHHhhCC
Q psy3231         291 VCNYCYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       291 ~C~~C~~~f~~~~~l~~H~~~h~  313 (420)
                      .|++|++.|.+...|..|++.|.
T Consensus        82 ~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           82 KCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             ECCCCCCccCCHHHHHHHHHHhC
Confidence            99999999999999999998873

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.3e-16  Score=119.38  Aligned_cols=85  Identities=24%  Similarity=0.518  Sum_probs=76.3

Q ss_pred             cCCCCCceecccccccccChHHHHHHhhccC--CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHH
Q psy3231         228 KHADENLFKCKKCLKVFSDEIKFHLHGRAHA--KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL  305 (420)
Q Consensus       228 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l  305 (420)
                      .|.++++|.| .|++.|.+...|..|++.|.  ++|.|++|++.|.+...|..|++. |.++++|.|++|++.|.+...|
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT-TCCCCCEECSSSCCEESCHHHH
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHH-cCCCCCeeCCCCcchhcCHHHH
Confidence            4778889999 89999999999999998885  789999999999999999999887 8889999999999999999999


Q ss_pred             HHHHhhCCC
Q psy3231         306 VDHFFHHGN  314 (420)
Q Consensus       306 ~~H~~~h~~  314 (420)
                      ..|++.|..
T Consensus        82 ~~H~~~~~~   90 (110)
T 2csh_A           82 HRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHccc
Confidence            999988753

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=113.17  Aligned_cols=86  Identities=30%  Similarity=0.650  Sum_probs=79.7

Q ss_pred             CccCCcccccc--CccccCCHHHHHHHHHHhcCCCCccccc--cccccccCchHHHHHHhhccCCCccccccccccccCh
Q psy3231          89 SIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLK  164 (420)
Q Consensus        89 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  164 (420)
                      ....++|.|..  |++.|.....|..|++ .|.++++|.|+  .|++.|.....|..|++.|.++++|.|.+|++.|.+.
T Consensus        10 ~~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   88 (100)
T 2ebt_A           10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS   88 (100)
T ss_dssp             CCSCCCEECCSSSCCCEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSH
T ss_pred             cccCcceEcCCCCCCCcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCH
Confidence            34567899997  9999999999999998 78888999996  6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy3231         165 SNLSKHVRHHM  175 (420)
Q Consensus       165 ~~l~~H~~~h~  175 (420)
                      ..|..|+++|.
T Consensus        89 ~~l~~H~~~H~   99 (100)
T 2ebt_A           89 DHLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999886

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.60  E-value=1.3e-15  Score=111.23  Aligned_cols=83  Identities=30%  Similarity=0.707  Sum_probs=76.1

Q ss_pred             CCcccccc--CccccCCHHHHHHHHHHhcCCCCccccc--cccccccCchHHHHHHhhccCCCccccccccccccChHHH
Q psy3231          92 ERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNL  167 (420)
Q Consensus        92 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  167 (420)
                      ..+|.|+.  |++.|.+...|..|++ .|.++++|.|+  .|++.|.....|..|++.|.++++|.|++|++.|.+...|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHH
Confidence            45799999  9999999999999998 78888999997  5999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy3231         168 SKHVRHHM  175 (420)
Q Consensus       168 ~~H~~~h~  175 (420)
                      ..|++.|.
T Consensus        82 ~~H~~~H~   89 (89)
T 2wbs_A           82 ALHMKRHF   89 (89)
T ss_dssp             HHHGGGGC
T ss_pred             HHHHHhhC
Confidence            99998873

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.59  E-value=8.7e-16  Score=101.62  Aligned_cols=57  Identities=30%  Similarity=0.628  Sum_probs=34.5

Q ss_pred             CCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCC
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGP  149 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (420)
                      |+||.|++||+.|.....|..|++ .|.++++|.|++|++.|.....|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-HhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            455666666666666666666655 555666666666666666666666666666554

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=9.1e-16  Score=109.25  Aligned_cols=71  Identities=20%  Similarity=0.381  Sum_probs=64.8

Q ss_pred             CCcccccc--cccccCChhHHHHHHHHhhccCCccccccccccccc--cccccCChhHHHHHHhhhcCCcccccccceee
Q psy3231         337 TSCFTCPF--CQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRY--CQRMFRNEDKLTAHELSHTMEKTFYRNVATVS  412 (420)
Q Consensus       337 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~  412 (420)
                      .++|.|..  |++.|.....|..|++.       .+.++++|.|+.  |++.|.+...|..|+++|++++||.|.+||++
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~-------~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKY-------QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHH-------GGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHH-------HhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            36788987  99999999999999983       166778899999  99999999999999999999999999999999


Q ss_pred             EE
Q psy3231         413 VC  414 (420)
Q Consensus       413 ~~  414 (420)
                      |+
T Consensus        78 F~   79 (79)
T 2dlk_A           78 SG   79 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.56  E-value=2.9e-15  Score=109.33  Aligned_cols=80  Identities=28%  Similarity=0.616  Sum_probs=60.4

Q ss_pred             CCceeccc--ccccccChHHHHHHhhccC--CCccCc--chhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHH
Q psy3231         232 ENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTL  305 (420)
Q Consensus       232 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~--~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l  305 (420)
                      ..+|.|++  |++.|.+...|..|++.|.  ++|.|+  .|++.|.+...|..|++. |.++++|.|++|++.|.+...|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHH-HHCCCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHH-cCCCCCccCCCCCcccCCHHHH
Confidence            34567777  7777777777777777665  667776  488888888888888776 7777888888888888888888


Q ss_pred             HHHHhhC
Q psy3231         306 VDHFFHH  312 (420)
Q Consensus       306 ~~H~~~h  312 (420)
                      ..|+++|
T Consensus        82 ~~H~~~H   88 (89)
T 2wbs_A           82 ALHMKRH   88 (89)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHhh
Confidence            8888776

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=7.5e-16  Score=112.14  Aligned_cols=80  Identities=20%  Similarity=0.455  Sum_probs=52.6

Q ss_pred             CccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHH
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVR  172 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  172 (420)
                      ++|.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|++.|++ .+|.|+.|++.|.+...|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            56667777777766666666666 45566666666666666666666666666653 56666666666666666666665


Q ss_pred             Hh
Q psy3231         173 HH  174 (420)
Q Consensus       173 ~h  174 (420)
                      .+
T Consensus        80 ~~   81 (88)
T 1llm_C           80 RL   81 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.55  E-value=7.8e-16  Score=112.05  Aligned_cols=82  Identities=22%  Similarity=0.430  Sum_probs=78.2

Q ss_pred             CCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHHHHh
Q psy3231         121 QKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKS  200 (420)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  200 (420)
                      +++|.|++|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|.+.++.|+.|++.|.+...|..|++.
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999998899999999999999999999876


Q ss_pred             hC
Q psy3231         201 HQ  202 (420)
Q Consensus       201 h~  202 (420)
                      .+
T Consensus        81 ~h   82 (88)
T 1llm_C           81 LK   82 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.54  E-value=7.6e-15  Score=109.61  Aligned_cols=82  Identities=30%  Similarity=0.687  Sum_probs=64.5

Q ss_pred             CCCceeccc--ccccccChHHHHHHhhccC--CCccCc--chhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhH
Q psy3231         231 DENLFKCKK--CLKVFSDEIKFHLHGRAHA--KFYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKST  304 (420)
Q Consensus       231 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~--~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~  304 (420)
                      ..++|.|++  |++.|.+...|..|++.|.  ++|.|+  .|++.|.....|..|++. |.++++|.|++|++.|.+...
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHH-HTSCCSCBCSSSCCBCSSHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHH-hCCCCCeECCCCcCccCCHHH
Confidence            345677775  8888877777877777775  678885  588888888888888876 777888888888888888888


Q ss_pred             HHHHHhhCC
Q psy3231         305 LVDHFFHHG  313 (420)
Q Consensus       305 l~~H~~~h~  313 (420)
                      |..|+++|.
T Consensus        91 l~~H~~~H~   99 (100)
T 2ebt_A           91 LALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            888888773

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.1e-14  Score=103.61  Aligned_cols=73  Identities=22%  Similarity=0.561  Sum_probs=64.9

Q ss_pred             ccCCcccccc--CccccCCHHHHHHHHHHhcCCCCcccccc--ccccccCchHHHHHHhhccCCCcccccccccccc
Q psy3231          90 IQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS  162 (420)
Q Consensus        90 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  162 (420)
                      .++++|.|..  |++.|.+...|..|++..|.++++|.|++  |++.|.....|..|+++|+++++|.|.+|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4567899987  99999999999999886788889999998  9999999999999999999999999999998873

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.4e-14  Score=102.42  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=60.8

Q ss_pred             cccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         333 NHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       333 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      .+...++|.|++|++.|.....|..|++.        +.++++|.|++|++.|.....|..|+++|++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRT--------HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTT--------TCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHH--------cCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34456899999999999999999999987        6778899999999999999999999999999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.50  E-value=2.1e-14  Score=103.68  Aligned_cols=77  Identities=29%  Similarity=0.581  Sum_probs=60.8

Q ss_pred             cccc--ccCccccCCHHHHHHHHHHhcCCCCcccccc--ccccccCchHHHHHHhhccCCCcccccc---ccccccChHH
Q psy3231          94 KFKC--EMCPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGPKIFTCAQ---CDKAFSLKSN  166 (420)
Q Consensus        94 ~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~---C~~~f~~~~~  166 (420)
                      ||.|  +.|++.|.+...|..|++ .|.++++|.|++  |++.|.....|..|++.|++   |.|..   |++.|.+...
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHH
Confidence            4778  778888888888888876 666777888877  88888888888888888777   77877   8888888888


Q ss_pred             HHHHHHHh
Q psy3231         167 LSKHVRHH  174 (420)
Q Consensus       167 l~~H~~~h  174 (420)
                      |..|++.|
T Consensus        77 l~~H~~~h   84 (85)
T 2j7j_A           77 YLKHVAEC   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            88887765

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.2e-14  Score=103.82  Aligned_cols=80  Identities=15%  Similarity=0.326  Sum_probs=67.5

Q ss_pred             hhhcccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         330 NLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       330 ~l~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .++.|...+||.|++|++.|.....|..|++.++...    ..+++|.|..|++.|.....|..|+++|++++++.|..|
T Consensus         6 H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~----~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN----FVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             CSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS----CCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             ccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc----CCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            3445555689999999999999999999998743221    112689999999999999999999999999999999999


Q ss_pred             eeeE
Q psy3231         410 TVSV  413 (420)
Q Consensus       410 ~~~~  413 (420)
                      +.+|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9876

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2e-14  Score=106.39  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=61.2

Q ss_pred             CCCcccccccccccCChhHHHHHHHH-hhccCCccccccccccccccccccCChhHHHHH-HhhhcCCccccccccee
Q psy3231         336 CTSCFTCPFCQRKYKIEKHLEKHIES-CIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAH-ELSHTMEKTFYRNVATV  411 (420)
Q Consensus       336 ~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~~~~c~~c~~  411 (420)
                      .++||.|+.|++.|.....|..|++. |..     ..++++|.|..||++|...+.|..| +++|+|++||.|.++..
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~-----~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPN-----VVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHHHHCSS-----CCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhhCCC-----CCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            34899999999999999999999974 211     0456789999999999999999999 89999999999988543

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.47  E-value=3.7e-14  Score=102.31  Aligned_cols=78  Identities=29%  Similarity=0.539  Sum_probs=69.0

Q ss_pred             cccc--ccccccccCchHHHHHHhhccCCCcccccc--ccccccChHHHHHHHHHhcCCCCCcch---hhhccCCHHHHH
Q psy3231         123 KYKC--KLCARMYRYKWNLKAHLKMHKGPKIFTCAQ--CDKAFSLKSNLSKHVRHHMENVKQCKI---CLEIFEDDEVLE  195 (420)
Q Consensus       123 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~C~~---C~~~f~~~~~l~  195 (420)
                      ||.|  +.|++.|.....|..|++.|.++++|.|++  |++.|.+...|..|++.|.+  |.|+.   |++.|.....|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f~~~~~l~   78 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTWTLYL   78 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEESSHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCccCCHHHHH
Confidence            5789  889999999999999999999999999988  99999999999999998887  88888   888888888888


Q ss_pred             HHHHhhC
Q psy3231         196 EHVKSHQ  202 (420)
Q Consensus       196 ~H~~~h~  202 (420)
                      .|+++|+
T Consensus        79 ~H~~~hh   85 (85)
T 2j7j_A           79 KHVAECH   85 (85)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhcC
Confidence            8887763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4.8e-14  Score=104.30  Aligned_cols=72  Identities=22%  Similarity=0.394  Sum_probs=65.3

Q ss_pred             CCccCCccccccCccccCCHHHHHHHHHHhc---CCCCccccccccccccCchHHHHH-HhhccCCCccccccccc
Q psy3231          88 KSIQERKFKCEMCPKSFDHKSNIRRHMAATH---DLQKKYKCKLCARMYRYKWNLKAH-LKMHKGPKIFTCAQCDK  159 (420)
Q Consensus        88 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~  159 (420)
                      ...++++|.|+.|++.|.....|..|++..|   .++++|.|++|++.|.....|..| +++|.+++||.|.++..
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            3568899999999999999999999997568   568999999999999999999999 89999999999988543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.46  E-value=6e-14  Score=98.27  Aligned_cols=64  Identities=20%  Similarity=0.430  Sum_probs=58.9

Q ss_pred             cccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCccc
Q psy3231         333 NHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTF  404 (420)
Q Consensus       333 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  404 (420)
                      .+...++|.|.+|++.|.....|..|++.        +.++++|+|..|++.|.....|..|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~--------H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTV--------HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHH--------HCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHH--------cCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            44556899999999999999999999998        66778899999999999999999999999999987

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.6e-13  Score=96.84  Aligned_cols=65  Identities=32%  Similarity=0.673  Sum_probs=60.0

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      ..++++|.|++|++.|.....|..|++ .|.++++|.|++|++.|.....|..|+++|++++||.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            456789999999999999999999998 78889999999999999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.6e-13  Score=99.15  Aligned_cols=75  Identities=21%  Similarity=0.363  Sum_probs=37.9

Q ss_pred             HHccccccCCCCCceecccccccccChHHHHHHhhccC------CCccCcchhhcCCCHHHHHHHHHhhcCCCCcccccc
Q psy3231         221 MRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHA------KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY  294 (420)
Q Consensus       221 l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~------~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  294 (420)
                      |.+|+ ..|.++++|.|++|++.|.....|..|++.+.      ++|.|++|++.|.....|..|++. |.+++++.|..
T Consensus         3 ~~~H~-~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~~~   80 (86)
T 1x6h_A            3 SGSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGEN   80 (86)
T ss_dssp             TTCCS-TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH-CCCCCSCCCCC
T ss_pred             ccccc-ceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH-ccCCCCcccCC
Confidence            44565 34555666655555555555555555544332      234555555555555555555444 44444455544


Q ss_pred             chh
Q psy3231         295 CYD  297 (420)
Q Consensus       295 C~~  297 (420)
                      |+.
T Consensus        81 ~~~   83 (86)
T 1x6h_A           81 SGP   83 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            444

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.1e-13  Score=94.31  Aligned_cols=64  Identities=16%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             ccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcccc
Q psy3231         334 HECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       334 H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                      |...++|.|++|++.|.....|..|++.        +.++++|+|++|++.|.....|..|+++|++++|..
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~--------H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERI--------HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGG--------GCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--------cCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            5556899999999999999999999987        677788999999999999999999999999998753

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.39  E-value=8.9e-14  Score=109.05  Aligned_cols=110  Identities=21%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             CccCCccccccCcccc--CCHHHHHHHHHHhcCCCCcccccccccccc------CchHHHHHHhhccCCCcccccccccc
Q psy3231          89 SIQERKFKCEMCPKSF--DHKSNIRRHMAATHDLQKKYKCKLCARMYR------YKWNLKAHLKMHKGPKIFTCAQCDKA  160 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f--~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~~  160 (420)
                      ..+.++|.|...+...  .....+..|.  ....++.+.|++|++.|.      ....|..|+ .|++++||.|++|++.
T Consensus         7 ~~~~k~~~~~~k~~~~~~s~ee~~~~~~--l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~   83 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFIHVTLEELKRYHQ--LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMP   83 (129)
T ss_dssp             CTTCCGGGGCSSCEEEECCHHHHHHHTT--SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCE
T ss_pred             cccccccccccCCeeeeecHHhhhcccc--CChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcc
Confidence            4566778776654433  2222222221  122245677777776665      334455555 5666777777777777


Q ss_pred             ccChHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHHHHhhC
Q psy3231         161 FSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQ  202 (420)
Q Consensus       161 f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~  202 (420)
                      |.....|..|++.| +++|.|++|++.|.....|..|++.|+
T Consensus        84 f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             ESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             cCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            77777777777777 667777777777777777777776665

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.39  E-value=2.5e-13  Score=96.76  Aligned_cols=63  Identities=24%  Similarity=0.517  Sum_probs=55.5

Q ss_pred             hcccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHH-hhhcCCc
Q psy3231         332 RNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHE-LSHTMEK  402 (420)
Q Consensus       332 ~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~  402 (420)
                      ..+...++|.|++|++.|.....|..|+++        +.+++||.|++|+++|.....|..|+ +.|++|.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~--------H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRL--------LHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHT--------TSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhh--------ccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            344445789999999999999999999998        77888999999999999999999998 5788764

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.39  E-value=4.4e-13  Score=93.77  Aligned_cols=63  Identities=32%  Similarity=0.730  Sum_probs=56.6

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCcc
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIF  152 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  152 (420)
                      ..++++|.|+.|++.|.....|..|++ .|.++++|.|++|++.|.....|..|++.|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            556788999999999999999999988 788889999999999999999999999999998875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.37  E-value=4.5e-13  Score=88.46  Aligned_cols=56  Identities=29%  Similarity=0.491  Sum_probs=52.7

Q ss_pred             cccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         339 CFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       339 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ||.|++|++.|.....|..|+++        +.++++|.|+.|+++|.+...|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--------HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--------TSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--------cCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999998        677889999999999999999999999999886

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=3.8e-13  Score=93.57  Aligned_cols=65  Identities=20%  Similarity=0.322  Sum_probs=58.8

Q ss_pred             hhcccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         331 LRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       331 l~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      .+.|...+||.|++|++.|.....|..|++.        +.++++|+|++|++.|.....|..|+++|+++.+
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--------h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRV--------HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHG--------GGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHh--------cCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3467778999999999999999999999997        6677899999999999999999999999998753

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=4.6e-13  Score=98.53  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=60.4

Q ss_pred             ccCCHHHHHHHHHHhcCCCCccccccccccc-cCchHHHHHHhhccCCCccccccccccccChHHHHHH-HHHhcCCCC
Q psy3231         103 SFDHKSNIRRHMAATHDLQKKYKCKLCARMY-RYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHMENVK  179 (420)
Q Consensus       103 ~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~  179 (420)
                      .|.....|..|++ .|.++++|.|++|++.| .....|..|++.| ++++|.|.+|++.|.....|..| +++|.+++|
T Consensus        15 ~~~~~~~~~~~~~-~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           15 VYAAGSLEEQWYL-EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSCTTCHHHHHHH-HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCchHHHHHHH-HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            4566677777776 56677888888888888 8888888888888 88888888888888888888888 778876654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=4.7e-13  Score=99.20  Aligned_cols=70  Identities=21%  Similarity=0.339  Sum_probs=59.8

Q ss_pred             hhhcccCCCcccccccccccC-ChhHHHHHHHHhhccCCccccc-cccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         330 NLRNHECTSCFTCPFCQRKYK-IEKHLEKHIESCIQLNPTTTVL-KTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       330 ~l~~H~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~~~~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .++.|...++|.|++|++.|. ....|..|+++        +.+ +++|.|.+|++.|.....|..|+++|++++|..-.
T Consensus        15 h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~--------h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           15 WQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEV--------CQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             HHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHH--------HHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             HHHHhccCCCcCCCCCCCChhhhHHHHHHHHHH--------HcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCC
Confidence            344555568899999999999 99999999998        444 67899999999999999999999999999986543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.34  E-value=1.8e-13  Score=107.27  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=59.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhh---ccCCCcccccccccccc------ChHHHHHHHHHhcCCCCCcchhhhc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKM---HKGPKIFTCAQCDKAFS------LKSNLSKHVRHHMENVKQCKICLEI  187 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~C~~C~~~  187 (420)
                      .+.+.++|.|...+.....  .+..+.+.   ...++.+.|++|+..|.      ....|..|+..+.+++|.|++|++.
T Consensus         6 ~~~~~k~~~~~~k~~~~~~--s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~h~~~~~~~C~~C~k~   83 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHV--TLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMP   83 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEEC--CHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHCSEECTTTCCE
T ss_pred             hcccccccccccCCeeeee--cHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHHHhCCCCCeECCCCCcc
Confidence            4567777777765544322  23334222   22345567777665554      4444555554334455666666666


Q ss_pred             cCCHHHHHHHHHhhCCCccccCCCccccCCHHHHHccccc
Q psy3231         188 FEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDM  227 (420)
Q Consensus       188 f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~  227 (420)
                      |.....|..|+++| +++|.|+.|++.|.....|..|++.
T Consensus        84 f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~  122 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCK  122 (129)
T ss_dssp             ESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            66666666665555 5556666666666666666655543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.4e-12  Score=90.61  Aligned_cols=59  Identities=36%  Similarity=0.654  Sum_probs=30.0

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHhcC
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHME  176 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  176 (420)
                      |.++++|.|++|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|.+
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            44444555555555555555555555555555555555555555555555555555443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=2e-12  Score=89.33  Aligned_cols=62  Identities=26%  Similarity=0.422  Sum_probs=44.6

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCc
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKI  151 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  151 (420)
                      +.++++|.|+.|++.|.....|..|++ .|.++++|.|++|++.|.....|..|++.|++++|
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHG-GGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHH-HcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            445667777777777777777777776 56667777777777777777777777777776654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=86.21  Aligned_cols=55  Identities=20%  Similarity=0.429  Sum_probs=48.3

Q ss_pred             CcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcC
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      +||.|++|++.|.....|..|+++        +.++++|.|+.|++.|....+|..|+++|++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRT--------HTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHH--------HHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCccCCCCcchhCChHHHHHHHHH--------cCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            689999999999999999999998        6667789999999999999999999999874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.6e-13  Score=98.81  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=54.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCcccccccccccc-CchHHHHHHhhccC-CCccccccccccccChHHHHHHHHHhcC
Q psy3231         104 FDHKSNIRRHMAATHDLQKKYKCKLCARMYR-YKWNLKAHLKMHKG-PKIFTCAQCDKAFSLKSNLSKHVRHHME  176 (420)
Q Consensus       104 f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~  176 (420)
                      +.....+..|++ .|.++++|.|++|++.|. ....|..|++.|++ +++|.|.+|++.|.+...|..|++.|++
T Consensus         6 ~~~~~~~~~h~~-~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A            6 SGPGGPEEQWQR-AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CCCCCSCSHHHH-TTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCCCcHHHHHH-HhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            344445567766 677777888888888888 78888888888777 7778888888888888888888777664

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=3.6e-12  Score=93.70  Aligned_cols=76  Identities=13%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             ccccCchHHHHHHhhccCCCccccccccccc-cChHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHH-HHhhCCCcc
Q psy3231         131 RMYRYKWNLKAHLKMHKGPKIFTCAQCDKAF-SLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEH-VKSHQNRRF  206 (420)
Q Consensus       131 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~  206 (420)
                      ..|.....|..|++.+.++++|.|++|++.| .+...|..|++.|.+++|.|.+|++.|.....|..| +++|.+++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            3566778888999999999999999999999 899999999998855588888888888888888888 888876654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.8e-12  Score=91.36  Aligned_cols=68  Identities=19%  Similarity=0.409  Sum_probs=41.6

Q ss_pred             HHccccccCCCCCceecccccccccChHHHHHHhh-ccC---CCccCcchhhcCCCHHHHHHHHHhhcCCCCc
Q psy3231         221 MRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGR-AHA---KFYRCSECEKRFATEDIMRQHFRNYHNKEDA  289 (420)
Q Consensus       221 l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~---~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~  289 (420)
                      |.+|+ ..|.++++|.|++|++.|.....|..|++ .|.   ++|+|++|++.|.....|..|++.+|..+.|
T Consensus         3 ~~~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCC-CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCccc-cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            34566 34666777777666666666666666664 343   3566666666666666666666665555544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.28  E-value=2.8e-12  Score=84.56  Aligned_cols=53  Identities=30%  Similarity=0.728  Sum_probs=25.4

Q ss_pred             CccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHh
Q psy3231         122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH  174 (420)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  174 (420)
                      ++|.|++|++.|.....|..|++.|.+++||.|++|++.|.+...|..|++.|
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            34444444444444444444444444445555555555555555555554444

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.5e-14  Score=97.81  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             CCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         337 TSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+||.|++|++.|.....|..               +++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus        16 ~~~~~C~~C~k~f~~~~~l~~---------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           16 DRSQKCSKCGIIFIRRSTLSR---------------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSEEECSSSCCEEECCCCCCC---------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCeeCCcccchhCCHHHhCc---------------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            366667777777666555544               4578999999999999999999999999999999987

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3.5e-12  Score=85.08  Aligned_cols=57  Identities=28%  Similarity=0.578  Sum_probs=51.7

Q ss_pred             CcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHH-hhhcCCc
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHE-LSHTMEK  402 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~  402 (420)
                      +||.|++|++.|.....|..|++.        +.++++|.|+.|++.|.+...|..|+ ++|+++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--------h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS--------HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--------TTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH--------hCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            589999999999999999999997        67778999999999999999999997 6888753

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.5e-12  Score=93.37  Aligned_cols=70  Identities=19%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             cccccccccccCChhHHHHHHHH-hhccCCccccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         339 CFTCPFCQRKYKIEKHLEKHIES-CIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       339 ~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.|..|++.|.....|..|++. |....+.....-.+|.|..|++.|.+...|..|+++|++++||.|..
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            46799999999999999999997 33221110001112899999999999999999999999999999963

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.26  E-value=7.2e-12  Score=89.16  Aligned_cols=60  Identities=25%  Similarity=0.480  Sum_probs=48.4

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHH-hhccCC
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHL-KMHKGP  149 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~  149 (420)
                      ....++|.|++|++.|.....|..|++ .|.++++|.|++|++.|.....|..|+ +.|.++
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            445677888888888888888888887 777888888888888888888888886 456654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=6.9e-12  Score=88.35  Aligned_cols=68  Identities=15%  Similarity=0.286  Sum_probs=55.5

Q ss_pred             hhhcccCCCcccccccccccCChhHHHHHHHHhhccCCccccc-cccccccccccccCChhHHHHHHhhhcC-Cccc
Q psy3231         330 NLRNHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVL-KTLQKCRYCQRMFRNEDKLTAHELSHTM-EKTF  404 (420)
Q Consensus       330 ~l~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~-~~~~  404 (420)
                      .++.|...+||.|++|++.|.....|..|++..       +.+ .++|+|+.|++.|.....|..|++.|++ +.|.
T Consensus         6 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~-------h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQK-------HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCSCCCSEECTTTCCEESCHHHHHHHHHHH-------SSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             cccccCCCCCeECCCcCchhCCHHHHHHHHHHh-------cCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            345566669999999999999999999999742       444 3689999999999999999999997554 5553

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=4e-12  Score=86.60  Aligned_cols=58  Identities=31%  Similarity=0.676  Sum_probs=31.8

Q ss_pred             ccCCccccccCccccCCHHHHHHHHHHhc-CCCCccccccccccccCchHHHHHHhhcc
Q psy3231          90 IQERKFKCEMCPKSFDHKSNIRRHMAATH-DLQKKYKCKLCARMYRYKWNLKAHLKMHK  147 (420)
Q Consensus        90 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (420)
                      .++++|.|+.|++.|.+...|..|++..| .++++|.|+.|++.|.....|..|++.++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            34455555555555555555555555334 34555555555555555555555555544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.24  E-value=8.6e-12  Score=82.17  Aligned_cols=56  Identities=30%  Similarity=0.602  Sum_probs=39.6

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCC
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPK  150 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (420)
                      ||.|+.|++.|.+...|..|++ .|.++++|.|++|++.|.....|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            4677777777777777777766 5666677777777777777777777777766553

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=8.1e-14  Score=97.33  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             HHHHHccccccCCCCCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccc
Q psy3231         218 ETRMRNHIDMKHADENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYC  295 (420)
Q Consensus       218 ~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C  295 (420)
                      ...|..|+ ..|.++++|.|++|++.|.....|..     .++|.|++|++.|.....|..|+++ |.+++||.|++|
T Consensus         3 ~~~l~~H~-~~h~~~~~~~C~~C~k~f~~~~~l~~-----~~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQ-KIHLGDRSQKCSKCGIIFIRRSTLSR-----RKTPMCEKCRKDSCQEAALNKDEGN-ESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCC-CCCCCCSEEECSSSCCEEECCCCCCC-----SSSCCCHHHHHTCSCCCSSCCCSSC-CCCCCCSSCCCC
T ss_pred             chhHHHHH-HHhCCCCCeeCCcccchhCCHHHhCc-----CCCCCCCCCChhhcCHHHHHHHHHh-hcCCCCCCCCCC
Confidence            34678898 45888999999999999988877765     6788899999999888888888876 888888888887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.23  E-value=8.7e-12  Score=83.10  Aligned_cols=54  Identities=28%  Similarity=0.752  Sum_probs=48.2

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHH-hhCC
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHF-FHHG  313 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~  313 (420)
                      +||.|++|++.|.+...|..|++. |.+++||.|++|++.|.+...|..|+ +.|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH-hCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            478999999999999999999987 88899999999999999999999996 6774

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=7.5e-12  Score=85.23  Aligned_cols=61  Identities=31%  Similarity=0.640  Sum_probs=56.5

Q ss_pred             HhcCCCCccccccccccccCchHHHHHHhh-c-cCCCccccccccccccChHHHHHHHHHhcC
Q psy3231         116 ATHDLQKKYKCKLCARMYRYKWNLKAHLKM-H-KGPKIFTCAQCDKAFSLKSNLSKHVRHHME  176 (420)
Q Consensus       116 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  176 (420)
                      ..|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.+...|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            368889999999999999999999999998 7 589999999999999999999999998764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=8.9e-12  Score=88.03  Aligned_cols=70  Identities=20%  Similarity=0.330  Sum_probs=58.2

Q ss_pred             ccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHH-hhhcCCccccccc
Q psy3231         334 HECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHE-LSHTMEKTFYRNV  408 (420)
Q Consensus       334 H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~~~~c~~  408 (420)
                      |...+||.|++|++.|.....|..|++.|...     .++++|.|.+|++.|.....|..|+ +.|.+++|..-..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~-----~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~   72 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAET-----VAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES   72 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHH-----TTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSSS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc-----CCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcccc
Confidence            55678999999999999999999999984431     1367899999999999999999999 5788787766443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=3.6e-12  Score=88.80  Aligned_cols=65  Identities=28%  Similarity=0.608  Sum_probs=39.9

Q ss_pred             HHHHHHHhcCCCCccccc--cccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHh
Q psy3231         110 IRRHMAATHDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH  174 (420)
Q Consensus       110 l~~H~~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h  174 (420)
                      |..|+...|.++++|.|+  .|++.|.....|..|++.|.++++|.|++|++.|.+...|..|++.|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            344444455666666665  36666666666666666666666666666666666666666666554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=86.29  Aligned_cols=62  Identities=23%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CCCCCceecccccccccChHHHHHHhhccC-----CCccCcchhhcCCCHHHHHHHHHhhcCCCCcc
Q psy3231         229 HADENLFKCKKCLKVFSDEIKFHLHGRAHA-----KFYRCSECEKRFATEDIMRQHFRNYHNKEDAY  290 (420)
Q Consensus       229 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-----~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~  290 (420)
                      |.++++|.|++|++.|.....|..|+++|.     ++|.|++|++.|.....|..|++..|.++.+.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            445555555555555555555555555442     35555555555555555555554445544443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=1.2e-11  Score=80.43  Aligned_cols=47  Identities=21%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             cccccccccccccccccCChhHHHHHHh-hhcCCcccccccceeeEEe
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHEL-SHTMEKTFYRNVATVSVCL  415 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~c~~c~~~~~~  415 (420)
                      .+.++++|.|++|++.|.....|..|++ +|++++||.|.+|+++|+.
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4677789999999999999999999997 9999999999999999975

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=4.5e-11  Score=87.93  Aligned_cols=63  Identities=17%  Similarity=0.337  Sum_probs=55.5

Q ss_pred             CccccccCccccCCHHHHHHHHHHhcCCCCc--------cccccccccccCchHHHHHHhhccCCCccccc
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMAATHDLQKK--------YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      ..|.|+.|++.|.....|..|++..|.++++        |.|++|++.|.....|..|+++|++++||.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            3478999999999999999999855888777        89999999999999999999999999999886

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=3.1e-11  Score=76.25  Aligned_cols=43  Identities=26%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccccee
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATV  411 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~  411 (420)
                      .+.++++|.|.+|++.|.....|..|+++|++++||.|.+||+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4667789999999999999999999999999999999999986

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=4.7e-11  Score=74.27  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=40.3

Q ss_pred             ccccccccccccccccccCChhHHHHHHhhhcCCcccccccce
Q psy3231         368 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVAT  410 (420)
Q Consensus       368 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~  410 (420)
                      ..++++++|.|+.|++.|...+.|..|+++|++++||.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3577889999999999999999999999999999999999997

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=5.2e-11  Score=82.81  Aligned_cols=52  Identities=29%  Similarity=0.740  Sum_probs=31.8

Q ss_pred             CccCc--chhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhC
Q psy3231         260 FYRCS--ECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       260 ~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      +|.|+  .|++.|.....|..|++. |.++++|.|++|++.|.....|..|+++|
T Consensus        19 ~~~C~~~~C~k~f~~~~~l~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           19 PYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CEECSSTTBCCEESSHHHHHHHHHH-HHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccCCcCCCCCCccCCHHHHHHHHHh-hCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            34454  355555556666666554 55666666666666666666666666655

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.1e-11  Score=76.34  Aligned_cols=41  Identities=27%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            37788999999999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.1e-11  Score=81.49  Aligned_cols=57  Identities=12%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             CCcccccccccccCChhHHHHHHHHhhccCCcccccccccccc-ccccccCChhHHHHHHhhhcCCcc
Q psy3231         337 TSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCR-YCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       337 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      .+||.|+.|++.|. ...|..|+++         .+++||+|+ .|+++|...+.|..|+++|.+.+|
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~---------~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQ---------CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHH---------CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCeeccccCCccC-HHHHHHHHHH---------cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            37899999999999 9999999874         456789999 999999999999999999988776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-11  Score=75.86  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            36788899999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.3e-11  Score=76.09  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.07  E-value=2.1e-11  Score=76.26  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.07  E-value=2.4e-11  Score=76.06  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=38.5

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|+|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            37788899999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.6e-11  Score=75.89  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            47788999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.07  E-value=2.6e-11  Score=75.84  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             ccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.6e-11  Score=75.83  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            47788999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.2e-11  Score=76.20  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=76.00  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.2e-11  Score=76.23  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.06  E-value=2.1e-11  Score=76.29  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.2e-11  Score=76.23  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.8e-11  Score=75.75  Aligned_cols=41  Identities=24%  Similarity=0.375  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|+|++|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36778899999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.3e-11  Score=76.12  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.5e-11  Score=75.96  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.8e-11  Score=75.75  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.1e-11  Score=75.50  Aligned_cols=41  Identities=22%  Similarity=0.301  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            36778899999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.9e-11  Score=75.63  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=38.0

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      +.++++|.|+.|+++|.+...|..|+++|++++||.|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7778899999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.6e-11  Score=75.83  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      +.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7778899999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.5e-11  Score=75.93  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3e-11  Score=75.57  Aligned_cols=41  Identities=27%  Similarity=0.339  Sum_probs=38.5

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            37788999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.05  E-value=2.8e-11  Score=75.74  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=38.0

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      +.++++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7778899999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.1e-11  Score=75.48  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      +.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7778899999999999999999999999999999999886

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.4e-11  Score=76.00  Aligned_cols=41  Identities=24%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.4e-11  Score=75.35  Aligned_cols=40  Identities=25%  Similarity=0.319  Sum_probs=38.1

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      +.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7788899999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.8e-11  Score=75.69  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.5e-11  Score=75.96  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36778899999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.6e-11  Score=75.87  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|++|++.|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            36778899999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.3e-11  Score=75.39  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=37.9

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      +.++++|.|+.|++.|.+.+.|..|+++|++++||.|++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6778899999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.04  E-value=3.2e-11  Score=75.44  Aligned_cols=41  Identities=22%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.5e-11  Score=75.95  Aligned_cols=41  Identities=22%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|..|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.9e-11  Score=75.67  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            36778899999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.6e-11  Score=75.88  Aligned_cols=41  Identities=20%  Similarity=0.215  Sum_probs=38.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.7e-11  Score=75.78  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.2e-11  Score=75.42  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|+.|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.6e-11  Score=75.86  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            37788999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.6e-10  Score=72.22  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788899999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.8e-11  Score=75.10  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=38.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.4e-11  Score=75.32  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.5e-11  Score=75.96  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=38.5

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|++|+++|...+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            36778899999999999999999999999999999999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=72.81  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             ccccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         368 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       368 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      ..+.++++|.|+.|+++|.+...|..|+++|++++||.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            357788999999999999999999999999999999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.4e-10  Score=72.38  Aligned_cols=42  Identities=29%  Similarity=0.375  Sum_probs=39.2

Q ss_pred             ccccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         368 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       368 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      ..+.++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            457788999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=72.39  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.+...|..|+++|++++||.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            47788999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=72.62  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=38.5

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            47788999999999999999999999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.6e-10  Score=72.22  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            47788899999999999999999999999999999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.3e-10  Score=77.73  Aligned_cols=60  Identities=23%  Similarity=0.304  Sum_probs=46.6

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccc-cccccccCchHHHHHHhhccCCCc
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCK-LCARMYRYKWNLKAHLKMHKGPKI  151 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~h~~~~~  151 (420)
                      .-++++|.|+.|++.|. ...|..|++ . .++++|.|+ .|++.|.....|..|+++|.+.++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~-~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQY-Q-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHH-H-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHH-H-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            34567788888888888 888888887 4 777888888 888888888888888887765543

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.6e-10  Score=72.19  Aligned_cols=41  Identities=22%  Similarity=0.216  Sum_probs=38.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            47788899999999999999999999999999999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=5e-11  Score=74.54  Aligned_cols=41  Identities=22%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37778899999999999999999999999999999999875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=2.9e-10  Score=69.83  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             ccccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         368 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       368 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      ..+.++++|.|..|++.|...+.|..|+++|++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            34778899999999999999999999999999999999974

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=7.5e-11  Score=74.10  Aligned_cols=41  Identities=24%  Similarity=0.219  Sum_probs=38.3

Q ss_pred             cccccccccccccccccCChhHHHHHHh-hhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHEL-SHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|+.|+++|...+.|..|++ +|++++||.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3778889999999999999999999999 9999999999987

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.98  E-value=1.8e-11  Score=82.07  Aligned_cols=47  Identities=19%  Similarity=0.242  Sum_probs=42.4

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccccceeeEEeeccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVSVCLGMKT  419 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~~~~~~~~  419 (420)
                      +.++++|+|+.|+++|.....|.   ++|++++||.|.+||++|....++
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            77888999999999999988887   899999999999999999987765

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.98  E-value=6.8e-11  Score=76.75  Aligned_cols=52  Identities=17%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             ccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCcccc
Q psy3231         346 QRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       346 ~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                      ++.|.....|..|++.        +.++++|.|..|++.|...+.|..|+++|+|++||+
T Consensus         3 ~k~~~~~~~l~~h~~~--------H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSR--------SQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHH--------HTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHh--------cCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4667888888889987        677889999999999999999999999999999984

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=8.4e-11  Score=73.49  Aligned_cols=41  Identities=27%  Similarity=0.312  Sum_probs=37.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37788899999999999999999999999999999999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.96  E-value=3.4e-10  Score=78.39  Aligned_cols=53  Identities=26%  Similarity=0.584  Sum_probs=45.5

Q ss_pred             CCccCcc--hhhcCCCHHHHHHHHHhhcCCCCcccccc--chhccCChhHHHHHHhhC
Q psy3231         259 KFYRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY--CYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       259 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  312 (420)
                      ++|.|+.  |++.|.....|..|++. |.+++||.|++  |++.|.....|..|+++|
T Consensus        16 ~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           16 RSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCEECSSTTTCCEESSHHHHHHHHHH-HSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CceeCCCCCCccccCCHHHHHHHHHh-cCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            6788877  88888889999999886 88889999965  999999999999998776

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.4e-10  Score=70.87  Aligned_cols=38  Identities=18%  Similarity=0.371  Sum_probs=35.8

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      +.++++|.|+.|+++|.+.+.|..|+++|++++||.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67788999999999999999999999999999999985

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.94  E-value=1.3e-10  Score=70.95  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=36.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|+
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            367788999999999999999999999999999999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.5e-10  Score=72.25  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            3777889999999999999999999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.4e-10  Score=72.41  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3778889999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.9e-10  Score=71.84  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=37.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3778899999999999999999999999999999999964

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.8e-10  Score=71.94  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=36.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677889999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.93  E-value=1.5e-10  Score=72.31  Aligned_cols=40  Identities=23%  Similarity=0.275  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677889999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.8e-10  Score=71.94  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|.+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            3677889999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.1e-10  Score=71.62  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      +.++++|.|+.|++.|.+.+.|..|+++|++++||.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            677889999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.2e-10  Score=71.54  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      +.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            677889999999999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.2e-10  Score=71.50  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=37.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|+|..|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3777889999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.6e-10  Score=72.12  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|+|..|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3778889999999999999999999999999999999964

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=5.9e-10  Score=67.58  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            47788999999999999999999999999999999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.7e-10  Score=72.05  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            3677889999999999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=8.2e-10  Score=68.87  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=37.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4778889999999999999999999999999999999964

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.8e-10  Score=71.91  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=36.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            3677889999999999999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.3e-10  Score=69.02  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=37.7

Q ss_pred             ccccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         368 TTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       368 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      ..+.++++|.|.+|++.|.....|..|+++|++++||.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            35778899999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.9e-10  Score=71.80  Aligned_cols=40  Identities=25%  Similarity=0.362  Sum_probs=36.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|.+.+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677889999999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2e-10  Score=71.73  Aligned_cols=40  Identities=23%  Similarity=0.384  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3777889999999999999999999999999999999964

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.1e-10  Score=71.62  Aligned_cols=40  Identities=23%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            3777889999999999999999999999999999999974

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.90  E-value=4.5e-10  Score=70.06  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55666666666666666666666666666666666666655

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.5e-10  Score=71.27  Aligned_cols=40  Identities=30%  Similarity=0.419  Sum_probs=36.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677889999999999999999999999999999999964

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.4e-10  Score=71.32  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|+.
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            3778889999999999999999999999999999999964

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=1.7e-09  Score=70.00  Aligned_cols=47  Identities=17%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccccccC
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRY  135 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~  135 (420)
                      +.++++|.|++|++.|.....|..|++..|.++++|.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            44566677777777777777777776546666667777777766654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1e-09  Score=68.45  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=37.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4778899999999999999999999999999999999974

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.5e-10  Score=70.07  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.8e-10  Score=71.01  Aligned_cols=39  Identities=23%  Similarity=0.341  Sum_probs=36.3

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|+|+.|++.|...+.|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            377788999999999999999999999999999999986

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.8e-10  Score=68.49  Aligned_cols=40  Identities=33%  Similarity=0.425  Sum_probs=37.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3778899999999999999999999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.2e-10  Score=70.23  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=25.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555666666666666666666666666666666666554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.9e-10  Score=69.89  Aligned_cols=41  Identities=24%  Similarity=0.355  Sum_probs=24.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            45555566666666666666666666666666666666554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.5e-10  Score=70.06  Aligned_cols=41  Identities=22%  Similarity=0.479  Sum_probs=26.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            45566666666666666666666666666666666666655

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=3.9e-10  Score=69.62  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|++|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.9e-10  Score=69.88  Aligned_cols=41  Identities=24%  Similarity=0.451  Sum_probs=26.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666655

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.9e-10  Score=69.89  Aligned_cols=41  Identities=20%  Similarity=0.367  Sum_probs=25.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555666666666666666666666666666666666554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.4e-10  Score=69.70  Aligned_cols=41  Identities=29%  Similarity=0.552  Sum_probs=25.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.5e-10  Score=70.08  Aligned_cols=41  Identities=27%  Similarity=0.478  Sum_probs=25.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3e-10  Score=70.15  Aligned_cols=39  Identities=23%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            377888999999999999999999999999999999984

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.7e-10  Score=70.37  Aligned_cols=39  Identities=18%  Similarity=0.362  Sum_probs=36.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            377888999999999999999999999999999999984

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4.6e-10  Score=70.05  Aligned_cols=41  Identities=20%  Similarity=0.314  Sum_probs=24.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555556666666666666666666666666666666554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.89  E-value=5e-10  Score=69.87  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            45556666666666666666666666666666666666554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.9e-10  Score=70.23  Aligned_cols=39  Identities=23%  Similarity=0.366  Sum_probs=36.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            377788999999999999999999999999999999984

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.5e-10  Score=71.25  Aligned_cols=40  Identities=25%  Similarity=0.328  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|+++|.....|..|+++|++++||.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            3777889999999999999999999999999999999964

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.88  E-value=5.2e-10  Score=69.77  Aligned_cols=41  Identities=27%  Similarity=0.493  Sum_probs=27.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56666666666666666666666666666666666666655

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.88  E-value=5.1e-10  Score=69.83  Aligned_cols=41  Identities=24%  Similarity=0.419  Sum_probs=23.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             ccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.4e-10  Score=69.71  Aligned_cols=41  Identities=24%  Similarity=0.475  Sum_probs=26.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.6e-10  Score=71.17  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      +.++++|.|+.|++.|...+.|..|+++|++++||.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            677889999999999999999999999999999999964

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=2.9e-10  Score=69.38  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            36788899999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=4.6e-10  Score=70.03  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=25.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.1e-10  Score=69.46  Aligned_cols=41  Identities=22%  Similarity=0.412  Sum_probs=26.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666655

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.88  E-value=1.7e-09  Score=74.72  Aligned_cols=57  Identities=28%  Similarity=0.551  Sum_probs=42.4

Q ss_pred             CccCCcccccc--CccccCCHHHHHHHHHHhcCCCCcccccc--ccccccCchHHHHHHhhc
Q psy3231          89 SIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL--CARMYRYKWNLKAHLKMH  146 (420)
Q Consensus        89 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h  146 (420)
                      ....++|.|..  |++.|.....|..|++ .|.++++|.|++  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHH-HHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHH-hcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34566788877  8888888888888876 677777788854  777777777777777654

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.8e-10  Score=69.55  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.88  E-value=5.1e-10  Score=69.80  Aligned_cols=41  Identities=27%  Similarity=0.379  Sum_probs=26.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.2e-10  Score=69.42  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         113 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       113 H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |++ .|.++++|.|++|++.|.....|..|++.|.++++|.|++|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGS-SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             Ccc-cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            444 56666677777777777777777777777777777777665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=5.5e-10  Score=69.67  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=23.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.7e-10  Score=69.61  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=23.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.1e-10  Score=70.83  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=35.9

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      +.++++|+|+.|++.|...+.|..|+++|++++||.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            67788999999999999999999999999999999986

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.9e-10  Score=69.54  Aligned_cols=41  Identities=27%  Similarity=0.478  Sum_probs=23.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.7e-10  Score=69.28  Aligned_cols=44  Identities=20%  Similarity=0.380  Sum_probs=29.0

Q ss_pred             HHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         113 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       113 H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |++ .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STT-CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             ccc-CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 56666666666666666666666666666666666666665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.6e-10  Score=69.62  Aligned_cols=41  Identities=24%  Similarity=0.432  Sum_probs=25.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666555

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.9e-10  Score=69.89  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=26.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666655

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.8e-10  Score=69.54  Aligned_cols=41  Identities=17%  Similarity=0.377  Sum_probs=25.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.3e-10  Score=69.75  Aligned_cols=41  Identities=27%  Similarity=0.458  Sum_probs=25.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.5e-10  Score=69.32  Aligned_cols=41  Identities=24%  Similarity=0.365  Sum_probs=25.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             TTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555666666666666666666666666666666666554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.87  E-value=6.1e-10  Score=69.46  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=25.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.3e-10  Score=69.74  Aligned_cols=41  Identities=22%  Similarity=0.449  Sum_probs=24.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555556666666666655566666655555556665554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.9e-10  Score=69.53  Aligned_cols=41  Identities=22%  Similarity=0.426  Sum_probs=24.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            45555556666666666666666666666666666666554

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.9e-10  Score=69.89  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|+.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45556666666666666666666666666666666666555

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.4e-10  Score=69.69  Aligned_cols=41  Identities=24%  Similarity=0.477  Sum_probs=24.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45555556666666666666666666666665566666554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=7.2e-10  Score=69.13  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=24.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45555556666666666655666666666655556665554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=3.3e-10  Score=69.97  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=35.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|+++|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            377888999999999999999999999999999999984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=3.8e-10  Score=69.64  Aligned_cols=39  Identities=18%  Similarity=0.310  Sum_probs=36.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            367788999999999999999999999999999999984

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.2e-10  Score=69.78  Aligned_cols=41  Identities=24%  Similarity=0.445  Sum_probs=25.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666654

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=2.8e-10  Score=69.50  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=35.6

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            37788899999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.3e-10  Score=69.75  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=28.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56666777777777777777777777777777777777665

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.1e-10  Score=69.47  Aligned_cols=41  Identities=20%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.7e-10  Score=69.61  Aligned_cols=41  Identities=32%  Similarity=0.547  Sum_probs=24.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            45555666666666666666666666666666666666554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=6.5e-10  Score=69.33  Aligned_cols=41  Identities=22%  Similarity=0.371  Sum_probs=26.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45566666666666666666666666666666666666655

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.5e-09  Score=67.57  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++||.|..
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4778889999999999999999999999999999999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.4e-09  Score=68.46  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             cccccccccccc--ccccccCChhHHHHHHhhhcCCcccccccc
Q psy3231         368 TTTVLKTLQKCR--YCQRMFRNEDKLTAHELSHTMEKTFYRNVA  409 (420)
Q Consensus       368 ~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c  409 (420)
                      ..+.++++|+|.  .|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            347788999998  899999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.5e-10  Score=69.31  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=7.5e-10  Score=69.05  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=24.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45555566666666666666666666666666666666554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.85  E-value=8.9e-10  Score=68.68  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45555555555555555555555555555555555555554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=5e-10  Score=69.87  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             HHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         113 HMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       113 H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |++ .|.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCC-CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            444 56666677777777777777777777777777777777665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.7e-10  Score=70.49  Aligned_cols=39  Identities=23%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|+|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            377888999999999999999999999999999999986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.84  E-value=1.4e-09  Score=66.26  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=35.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            36778899999999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.7e-10  Score=70.36  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=36.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|+++|.....|..|+++|++++||.|+
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            377888999999999999999999999999999999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.8e-10  Score=69.93  Aligned_cols=40  Identities=23%  Similarity=0.303  Sum_probs=36.7

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      .+.++++|.|+.|++.|...+.|..|+++|++++||.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677889999999999999999999999999999999963

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.5e-10  Score=69.03  Aligned_cols=41  Identities=27%  Similarity=0.521  Sum_probs=24.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|++|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45555556666666666666666666666666666666554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=66.53  Aligned_cols=38  Identities=26%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      .+.++++|.|+.|+++|.+.+.|..|+++|++++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            37788899999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.7e-09  Score=65.75  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            467788999999999999999999999999999999984

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.1e-09  Score=68.35  Aligned_cols=41  Identities=27%  Similarity=0.445  Sum_probs=25.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45556666666666666666666666666666666666543

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.2e-09  Score=68.35  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHh-hccCCCccccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLK-MHKGPKIFTCAQC  157 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C  157 (420)
                      .|.++++|.|++|++.|.....|..|++ .|.+++||.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4556666666666666666666666666 6666666666655

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.2e-10  Score=68.38  Aligned_cols=39  Identities=18%  Similarity=0.197  Sum_probs=36.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|..|++.|...+.|..|+++|++++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            377889999999999999999999999999999999874

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=2.4e-09  Score=67.35  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=24.8

Q ss_pred             CccCCccccccCccccCCHHHHHHHHHHhcCCCCccccccccc
Q psy3231          89 SIQERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCAR  131 (420)
Q Consensus        89 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~  131 (420)
                      +.++++|.|++|++.|.....|..|++ .|.++++|.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGG-GSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHH-hcCCCCCccCCCCCC
Confidence            344556666666666666666666655 555556666666653

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=2.4e-09  Score=66.66  Aligned_cols=40  Identities=28%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcC-Cccccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTM-EKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~-~~~~~c~~  408 (420)
                      .+.++++|.|+.|+++|...+.|..|+++|++ ++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37788899999999999999999999999999 99999964

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.6e-10  Score=70.01  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=35.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .+.++++|.|++|++.|.....|..|+++|++++||.|.
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            367788999999999999999999999999999999985

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.6e-09  Score=67.48  Aligned_cols=40  Identities=30%  Similarity=0.584  Sum_probs=23.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQ  156 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~  156 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4555555666666666666666666666666555665554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=3e-09  Score=65.90  Aligned_cols=40  Identities=20%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |.++++|.|++|++.|.....|..|+++|.++++|.|+.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            3444444444444444444444445444444445555444

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.77  E-value=3.3e-09  Score=63.41  Aligned_cols=37  Identities=24%  Similarity=0.432  Sum_probs=33.9

Q ss_pred             cccccccccccccccCChhHHHHHHhhhcCCcccccc
Q psy3231         371 VLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRN  407 (420)
Q Consensus       371 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~  407 (420)
                      .++++|.|..|++.|...+.|..|+++|++++||.+.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            4567899999999999999999999999999999864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.76  E-value=3.2e-10  Score=75.85  Aligned_cols=54  Identities=11%  Similarity=0.378  Sum_probs=37.1

Q ss_pred             HHHHhhcCCCCccccccchhccCChhHHHHHHhhCC--CcccCCccCCcCCCchhhhccc
Q psy3231         278 QHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG--NPYMCNHCFLMFPDEKNLRNHE  335 (420)
Q Consensus       278 ~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~C~~C~~~f~~~~~l~~H~  335 (420)
                      .|++. |.+++||.|++|++.|.....|.   +.|.  +||.|++||+.|....++..+.
T Consensus         4 ~h~~~-H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            4 TDERD-STNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCSSS-CCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hHHHH-cCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccccccc
Confidence            45554 77777777777777777777665   5552  6777777777777766665543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.74  E-value=5e-09  Score=59.97  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCccccc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYR  406 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c  406 (420)
                      +||.|+.|++.|...+.|..|+++|+|++||.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478999999999999999999999999999863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6e-09  Score=64.81  Aligned_cols=40  Identities=30%  Similarity=0.570  Sum_probs=19.5

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |.++++|.|++|++.|.....|..|++.|.+++||.|++|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4444444454455444444445555444444445554443

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.72  E-value=3.6e-09  Score=64.38  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=23.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            45555566666666666666666666666666666655

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.72  E-value=3.3e-09  Score=66.04  Aligned_cols=39  Identities=21%  Similarity=0.431  Sum_probs=22.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            6 SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.8e-09  Score=65.72  Aligned_cols=39  Identities=26%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            455566666666666666666666666666666666664

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4.4e-09  Score=63.99  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=22.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            45555556666666666666666666666655555555

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=9.8e-09  Score=67.72  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             cccccccccccc--cccccCChhHHHHHH-hhhcCCccccccc
Q psy3231         369 TTVLKTLQKCRY--CQRMFRNEDKLTAHE-LSHTMEKTFYRNV  408 (420)
Q Consensus       369 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~~~~~c~~  408 (420)
                      ...+++||+|..  |+++|...+.|..|+ ++|+++|||.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            466789999976  999999999999998 6899999998864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.7e-09  Score=65.79  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=22.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=4.5e-09  Score=65.41  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCccccccc
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |.++++|.|++|++.|.....|..|+++|.+++||.|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4444555555555555555555555555555555555544

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.9e-09  Score=65.68  Aligned_cols=39  Identities=23%  Similarity=0.456  Sum_probs=24.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            6 SGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455566666666666666666666666666666666664

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.3e-09  Score=65.48  Aligned_cols=39  Identities=23%  Similarity=0.424  Sum_probs=23.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555666666666666666666666666666666554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.4e-09  Score=65.43  Aligned_cols=39  Identities=23%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455555566666666666555666666555555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.6e-09  Score=65.33  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=23.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555666666666666666666666666666666654

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.1e-09  Score=65.60  Aligned_cols=39  Identities=31%  Similarity=0.525  Sum_probs=22.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.3e-09  Score=65.50  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=23.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            455555566666666666666666666666666666554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.5e-09  Score=65.40  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455556666666666666666666666666666666654

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.2e-09  Score=65.11  Aligned_cols=39  Identities=21%  Similarity=0.456  Sum_probs=23.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455556666666666666666666666666666666654

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.3e-09  Score=65.49  Aligned_cols=39  Identities=26%  Similarity=0.461  Sum_probs=23.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            455555666666666666666666666666666666554

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.7e-09  Score=65.29  Aligned_cols=39  Identities=23%  Similarity=0.483  Sum_probs=23.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            455555666666666666666666666666666666554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5e-09  Score=65.20  Aligned_cols=39  Identities=26%  Similarity=0.473  Sum_probs=24.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455556666666666666666666666666666666664

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.6e-09  Score=65.33  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            455556666666666666666666666666666666654

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.7e-09  Score=65.30  Aligned_cols=39  Identities=31%  Similarity=0.514  Sum_probs=24.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455566666666666666666666666666666666664

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5.2e-09  Score=65.11  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            445555555555555555555555555555555555554

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.4e-09  Score=65.42  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=23.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            455556666666666666666666666666666666654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.8e-09  Score=65.29  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            444455555555555555555555555555555555554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5.2e-09  Score=65.11  Aligned_cols=39  Identities=28%  Similarity=0.502  Sum_probs=24.4

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455566666666666666666666666666666666664

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.67  E-value=2.3e-09  Score=69.33  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             cccCCHHHHHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCcc
Q psy3231         102 KSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIF  152 (420)
Q Consensus       102 ~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~  152 (420)
                      +.|.....|..|++ .|.++++|.|++|++.|.....|..|+++|++++||
T Consensus         4 k~~~~~~~l~~h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRS-RSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHH-HHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHH-hcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            34555555566655 556666666666666666666666666666666554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.2e-09  Score=64.76  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=22.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.2e-09  Score=64.02  Aligned_cols=38  Identities=26%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            45555566666666666666666666666666666555

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.9e-09  Score=64.84  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            455556666666666666666666666666666666654

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=5.1e-09  Score=64.42  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            45555666666666666666666666666666666655

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=5.7e-09  Score=64.93  Aligned_cols=39  Identities=21%  Similarity=0.491  Sum_probs=22.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             cCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=6.2e-09  Score=64.02  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            45555555555555555555555556555555555555

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=7.8e-09  Score=63.58  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            45666666666666666666666666666666666665

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=6.9e-09  Score=64.52  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccC-CCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKG-PKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+ ++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45566666666666666666666666666666 6666664

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=8.5e-09  Score=64.10  Aligned_cols=39  Identities=23%  Similarity=0.478  Sum_probs=24.5

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455566666666666666666666666666666666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=7.8e-09  Score=63.59  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=23.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            45555566666666666666666666666666666655

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=6.6e-09  Score=63.20  Aligned_cols=38  Identities=29%  Similarity=0.588  Sum_probs=22.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45555556666666666665666666666655555554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.64  E-value=8.2e-09  Score=62.74  Aligned_cols=38  Identities=13%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45555555555555555555555555555555555554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=7.9e-09  Score=64.24  Aligned_cols=39  Identities=23%  Similarity=0.478  Sum_probs=24.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455566666666666666666666666666666666664

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5.6e-09  Score=63.51  Aligned_cols=38  Identities=24%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            45555666666666666666666666666666666555

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=6.6e-09  Score=63.18  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45555555555555555555555555555555555554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=7e-09  Score=64.52  Aligned_cols=39  Identities=21%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455555555555555555555555555555555555554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=2.4e-08  Score=61.02  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=18.7

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      |.++++|.|+.|++.|.....|..|++.|.+++||.|+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            34444455555555555555555555555555555443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1e-08  Score=71.20  Aligned_cols=63  Identities=21%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             hhhhcccCC----CcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         329 KNLRNHECT----SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       329 ~~l~~H~~~----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ..|..|+..    +|+.|..|++.|. ...|..|+ .        +.++++|.|+.|++.|. ...|..|+++|++++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~--------~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-D--------YCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-H--------HHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-h--------HcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            356667653    8899999999994 99999998 5        66677899999999987 599999999998874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.60  E-value=2.3e-08  Score=57.94  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      +.++++|.|..|++.|.+.+.|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            4567889999999999999999999999999876

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.2e-08  Score=62.75  Aligned_cols=38  Identities=18%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            34444455555555555555555555555555555544

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.8e-08  Score=58.38  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      .+.++++|.|..|++.|...+.|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            36778899999999999999999999999999886

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=8.8e-09  Score=64.03  Aligned_cols=39  Identities=21%  Similarity=0.390  Sum_probs=25.0

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      .|.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666666666666666666666666666666666664

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.58  E-value=2.8e-08  Score=57.54  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      +.++++|.|..|++.|...+.|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5677899999999999999999999999999876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=8.7e-09  Score=63.37  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=24.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            55666666666666666666666666666666666665

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.2e-08  Score=59.69  Aligned_cols=38  Identities=26%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|+++|.+++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            34555555555555555555555555555555555554

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.1e-08  Score=61.12  Aligned_cols=38  Identities=32%  Similarity=0.541  Sum_probs=19.2

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCccccc
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCA  155 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  155 (420)
                      |.++++|.|++|++.|.....|..|+++|.++++|.|+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            44444555555555555555555555555555555543

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.9e-08  Score=61.02  Aligned_cols=37  Identities=19%  Similarity=0.344  Sum_probs=17.3

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      |.++++|.|++|++.|.....|..|++.|.+++||.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            3444444444444444444444444444444444444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=3.7e-08  Score=57.88  Aligned_cols=33  Identities=30%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             ccccccccccc--cccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRY--CQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.+++||+|+.  |+++|...+.|+.|+++|++++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56788999986  9999999999999999999863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=4.5e-08  Score=61.31  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             cCCCCccccc--cccccccCchHHHHHHhhccCCCccccccc
Q psy3231         118 HDLQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIFTCAQC  157 (420)
Q Consensus       118 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  157 (420)
                      |.++++|.|.  .|++.|.....|..|+++|.+++||.|.+|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4444455554  455555555555555555555555555444

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=2.5e-08  Score=61.22  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=22.9

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccCCCcccc
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTC  154 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C  154 (420)
                      .|.++++|.|++|++.|.....|..|++.|.+++||.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            45555666666666666666666666666666665554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.48  E-value=6.1e-09  Score=59.12  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCccc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEKTF  404 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~  404 (420)
                      +||.|..|+++|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4799999999999999999999999999987

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.47  E-value=6.1e-08  Score=57.27  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             ccccccccc--ccccccCChhHHHHHHhhhcCCcccc
Q psy3231         371 VLKTLQKCR--YCQRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       371 ~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                      .++++|.|.  .|+++|...+.|..|+++|++++||.
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            466789999  59999999999999999999999873

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=7.3e-09  Score=71.92  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             HHHHHHHhcCCCCccccccccccccCchHHHHHHhhccCCCccccccccccccChHHHHHHHHHhcC
Q psy3231         110 IRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHME  176 (420)
Q Consensus       110 l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  176 (420)
                      |..|+. .|-+.+++.|+.|++.|. ...|..|+ .+.+++|+.|+.|++.|. ...|..|++++.+
T Consensus         5 L~~H~~-~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            5 SSGHEE-TECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CSCCCC-CCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHhhCc-ccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            344443 455566666666666663 56666666 566666666666666555 3666666665543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.3e-07  Score=55.00  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      .+.++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            3667789999999999999999999999999874

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.3e-07  Score=55.04  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.++++|+|..|++.|...+.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            566789999999999999999999999999874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.40  E-value=6.9e-08  Score=56.63  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=28.7

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCC
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      +.++++|+|+.|++.|.....|..|+++|+++
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            67788999999999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.6e-07  Score=54.67  Aligned_cols=33  Identities=30%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.++++|+|..|++.|...+.|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            667789999999999999999999999998874

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=2.2e-07  Score=53.99  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=29.7

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.++++|.|..|++.|.....|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            567789999999999999999999999999875

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=6.3e-08  Score=69.31  Aligned_cols=56  Identities=13%  Similarity=0.214  Sum_probs=36.6

Q ss_pred             cccCCCcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhhcC
Q psy3231         333 NHECTSCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       333 ~H~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      .|...+||.|++|++.|.....|..|+++        +.++++|+|..|    .....|..|++.|.|
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~--------Ht~ekp~~C~~~----~~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNI--------HNEEFQKRAKRQ----ERRKQLLSKQKYADG   74 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHH--------HHHHHHHHCCCC----SCCCCCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHH--------hCCCCCcccchh----hhHHHHHhhhccccc
Confidence            34455677777777777777777777776        555666777543    345566666666666

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.6e-07  Score=55.01  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             cccccccccccccccccCCh-hHHHHHHhhhcCCc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNE-DKLTAHELSHTMEK  402 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~H~~~~  402 (420)
                      .+.++++|+|+.|++.|... +.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            36677899999999999999 99999999998874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.37  E-value=2.1e-07  Score=55.23  Aligned_cols=34  Identities=24%  Similarity=0.580  Sum_probs=17.6

Q ss_pred             CCCccccccccccccCchHHHHHHhhccCCCccc
Q psy3231         120 LQKKYKCKLCARMYRYKWNLKAHLKMHKGPKIFT  153 (420)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  153 (420)
                      ++++|.|++|++.|.....|..|++.|.++++|.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            3445555555555555555555555555555544

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.35  E-value=3.9e-08  Score=70.43  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=39.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCccccccccee
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATV  411 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~  411 (420)
                      .+.++++|.|+.|++.|.....|..|+++|++++||.|..|.+
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~   61 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER   61 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh
Confidence            4778899999999999999999999999999999999988765

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.3e-07  Score=53.95  Aligned_cols=33  Identities=33%  Similarity=0.589  Sum_probs=29.3

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.++++|.|+.|++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            556788999999999999999999999999874

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.34  E-value=2.8e-07  Score=50.46  Aligned_cols=29  Identities=38%  Similarity=0.590  Sum_probs=25.2

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|.|+.|+++|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            36889999999999999999999998864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.32  E-value=2.3e-07  Score=50.87  Aligned_cols=29  Identities=34%  Similarity=0.494  Sum_probs=25.5

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +||.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            46889999999999999999999998874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.32  E-value=2.2e-07  Score=53.67  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCccccccc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      ..+++||+|+.|+++|.+.+.|.+|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            45778999999999999999999998       787765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.31  E-value=3.3e-07  Score=50.60  Aligned_cols=30  Identities=17%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCcc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEKT  403 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~  403 (420)
                      ++|.|..|++.|...+.|..|+++|++++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            368899999999999999999999998764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.28  E-value=2.9e-07  Score=53.12  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=23.5

Q ss_pred             cCCCCccccccchhccCChhHHHHHHhhCCCcccCCc
Q psy3231         284 HNKEDAYVCNYCYDSFETKSTLVDHFFHHGNPYMCNH  320 (420)
Q Consensus       284 H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~  320 (420)
                      +.+++||.|+.|+++|..++.|..|+     ||.|.+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-----py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-----AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-----HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-----CeECcC
Confidence            45677788888888888888888776     666654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=3.7e-07  Score=50.38  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=25.9

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|.|..|+++|.....|..|+++|++++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            57899999999999999999999998874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.27  E-value=3.6e-07  Score=53.52  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=29.0

Q ss_pred             ccccccccccc--cccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRY--CQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.++++|.|.+  |++.|...+.|..|+++|+|++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56678899985  9999999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.27  E-value=4.4e-07  Score=50.67  Aligned_cols=29  Identities=38%  Similarity=0.678  Sum_probs=25.9

Q ss_pred             cccccc--ccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCR--YCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +||.|+  .|+++|...+.|..|+++|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478898  89999999999999999999874

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=3.9e-07  Score=49.82  Aligned_cols=29  Identities=28%  Similarity=0.494  Sum_probs=25.2

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47889999999999999999999998874

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=3e-07  Score=50.29  Aligned_cols=29  Identities=34%  Similarity=0.527  Sum_probs=25.1

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            36889999999999999999999998874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.26  E-value=5e-07  Score=51.33  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=25.8

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCCCccc
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYV  291 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  291 (420)
                      +||.|++|++.|.....|..|+++ |++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL-HELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH-HTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH-hCCCCCCC
Confidence            468888888888888888888876 88888774

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.25  E-value=4.7e-07  Score=48.62  Aligned_cols=27  Identities=30%  Similarity=0.607  Sum_probs=23.0

Q ss_pred             cccccccccccCChhHHHHHHhhhcCC
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      ||+|..|++.|.+.+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            578999999999999999999999864

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=52.04  Aligned_cols=29  Identities=34%  Similarity=0.535  Sum_probs=25.4

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +||.|..|+++|...++|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            36889999999999999999999998864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.23  E-value=4.1e-07  Score=56.86  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=28.8

Q ss_pred             ccccccccccccccccCChhHHHHHHh-hhcCCcc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHEL-SHTMEKT  403 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~  403 (420)
                      ++++++|.|.+|++.|.....|..|++ +|+++.+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            567889999999999999999999999 9998754

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.22  E-value=4.8e-07  Score=52.87  Aligned_cols=34  Identities=35%  Similarity=0.699  Sum_probs=17.6

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHhc
Q psy3231         142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM  175 (420)
Q Consensus       142 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  175 (420)
                      |++.|.+++||.|+.|++.|.....|..|++.|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            3444555555555555555555555555555443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.21  E-value=7.6e-07  Score=50.04  Aligned_cols=29  Identities=24%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             cccccc--ccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCR--YCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|.|.  .|+++|...+.|..|+++|++++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            578999  89999999999999999999874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.20  E-value=8.7e-07  Score=50.95  Aligned_cols=29  Identities=24%  Similarity=0.574  Sum_probs=12.6

Q ss_pred             CCCccccccccccccCchHHHHHHhhccC
Q psy3231         120 LQKKYKCKLCARMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (420)
                      ++++|.|++|++.|.....|..|++.|++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            33444444444444444444444444443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.20  E-value=1.3e-06  Score=57.66  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             CccCCcccccc--CccccCCHHHHHHHHHHhcCCCCcccccc
Q psy3231          89 SIQERKFKCEM--CPKSFDHKSNIRRHMAATHDLQKKYKCKL  128 (420)
Q Consensus        89 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~C~~  128 (420)
                      ..+++||+|..  |++.|.....|..|++.+|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            45678888864  88888888888888755788888877754

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=5.8e-07  Score=52.59  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             ccccccccccccccccCChhHHHHH-HhhhcCC
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAH-ELSHTME  401 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~  401 (420)
                      +.+++||+|+.|+++|...+.|..| +++|+++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            6677889999999999999999999 8888875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.19  E-value=9.8e-07  Score=50.76  Aligned_cols=30  Identities=27%  Similarity=0.600  Sum_probs=13.2

Q ss_pred             CCCccccccccccccCchHHHHHHhhccCC
Q psy3231         120 LQKKYKCKLCARMYRYKWNLKAHLKMHKGP  149 (420)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (420)
                      ++++|.|.+|++.|.....|..|++.|.++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            344444444444444444444444444433

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.16  E-value=7.7e-07  Score=48.23  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=23.3

Q ss_pred             ccccccccccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ++|.|+.|++.|...+.|..|+++|+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            478899999999999999999988874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.44  E-value=2.8e-07  Score=50.96  Aligned_cols=29  Identities=38%  Similarity=0.487  Sum_probs=25.6

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|.|..|++.|.+...|..|+++|++++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            47889999999999999999999998764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1.1e-06  Score=51.29  Aligned_cols=31  Identities=19%  Similarity=0.528  Sum_probs=13.3

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccC
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (420)
                      |.++++|.|++|++.|.....|..|++.|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            3334444444444444444444444444443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=1e-06  Score=48.59  Aligned_cols=29  Identities=28%  Similarity=0.495  Sum_probs=25.3

Q ss_pred             ccccccccccccCChhHHHHH-HhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAH-ELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~  402 (420)
                      ++|.|..|++.|.+.+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            368899999999999999999 68998874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.12  E-value=8.1e-07  Score=47.73  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             ccccccccccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      +||.|+.|+++|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            47888888888888888888888874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.11  E-value=1.1e-06  Score=47.19  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             ccccccccccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      ++|.|..|++.|...+.|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            46778888888888888888887774

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=2.2e-06  Score=57.10  Aligned_cols=41  Identities=17%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCcccccccce
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVAT  410 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~  410 (420)
                      ...+++||+|..|++.|.....|..|+++|+++. ..+.+++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            3566789999999999999999999999999864 3444444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=2.6e-06  Score=49.86  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=11.8

Q ss_pred             cCCcccccc--CccccCCHHHHHHHHH
Q psy3231          91 QERKFKCEM--CPKSFDHKSNIRRHMA  115 (420)
Q Consensus        91 ~~~~~~C~~--C~~~f~~~~~l~~H~~  115 (420)
                      +++||+|+.  |++.|.....|..|++
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r   32 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLK   32 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHH
Confidence            344444443  4444444444444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.27  E-value=7.2e-07  Score=47.41  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             ccccccccccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      +||.|+.|+++|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            36778888888888888888887764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.01  E-value=1.6e-06  Score=53.77  Aligned_cols=33  Identities=15%  Similarity=0.399  Sum_probs=28.5

Q ss_pred             cccccccccc--ccccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCR--YCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.++++|.|.  .|+++|...+.|..|+++|+|++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            6677889995  69999999999999999998875

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=2.8e-06  Score=49.82  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=16.2

Q ss_pred             CCCccccc--cccccccCchHHHHHHhhccCCCcc
Q psy3231         120 LQKKYKCK--LCARMYRYKWNLKAHLKMHKGPKIF  152 (420)
Q Consensus       120 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  152 (420)
                      ++++|.|.  .|++.|.....|..|++.|.++++|
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            34445555  2555555555555555555544443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=3.5e-06  Score=48.66  Aligned_cols=23  Identities=26%  Similarity=0.626  Sum_probs=9.7

Q ss_pred             CCccccccCccccCCHHHHHHHH
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHM  114 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~  114 (420)
                      +++|.|+.|++.|.....|..|+
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHL   29 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHH
Confidence            33444444444444444444443

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=4.1e-06  Score=48.42  Aligned_cols=24  Identities=38%  Similarity=0.797  Sum_probs=10.3

Q ss_pred             CCccccccCccccCCHHHHHHHHH
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      +++|.|+.|++.|.....|..|++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCCccCCCCCchhCCHHHHHHHHH
Confidence            344444444444444444444433

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=2.8e-06  Score=49.55  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=16.5

Q ss_pred             hccCCCccccccccccccChHHHHHH-HHHhc
Q psy3231         145 MHKGPKIFTCAQCDKAFSLKSNLSKH-VRHHM  175 (420)
Q Consensus       145 ~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~  175 (420)
                      .|.+++||.|+.|++.|.....|..| ++.|.
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            34455555555555555555555555 44443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.97  E-value=1.8e-06  Score=48.53  Aligned_cols=28  Identities=21%  Similarity=0.498  Sum_probs=25.6

Q ss_pred             cceecchhhHHHHhhhhhhhhhcccCCCC
Q psy3231           4 KTYTCDFCSAAFALKHSIADHIQTEHMGN   32 (420)
Q Consensus         4 k~~~C~~C~~~f~~~~~l~~H~~~~h~~~   32 (420)
                      +||.|++|++.|...++|..|++. |.++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~-H~~~   28 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT-AFIV   28 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS-SSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH-HccC
Confidence            689999999999999999999998 6655

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=3.9e-06  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.739  Sum_probs=9.7

Q ss_pred             CCccccccCccccCCHHHHHHHH
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHM  114 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~  114 (420)
                      +++|.|+.|++.|.....|..|+
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHM   29 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCeECCCCCCccCCHHHHHHHH
Confidence            33444444444444444444443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=4.3e-06  Score=48.67  Aligned_cols=31  Identities=23%  Similarity=0.477  Sum_probs=14.5

Q ss_pred             cCCCCccccccccccccCc-hHHHHHHhhccC
Q psy3231         118 HDLQKKYKCKLCARMYRYK-WNLKAHLKMHKG  148 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~  148 (420)
                      |.++++|.|++|++.|... ..|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            3444444444444444444 444444444443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.95  E-value=5.1e-06  Score=47.94  Aligned_cols=24  Identities=29%  Similarity=0.717  Sum_probs=10.4

Q ss_pred             CCccccccCccccCCHHHHHHHHH
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      +++|.|+.|++.|.....|..|++
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHH
Confidence            344444444444444444444443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=6.4e-06  Score=47.55  Aligned_cols=24  Identities=33%  Similarity=0.802  Sum_probs=11.2

Q ss_pred             CCccccccCccccCCHHHHHHHHH
Q psy3231          92 ERKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        92 ~~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      +++|.|+.|++.|.....|..|++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHH
Confidence            344444444444444444444444

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.89  E-value=4.6e-06  Score=44.64  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=18.0

Q ss_pred             CccccccchhccCChhHHHHHHhhC
Q psy3231         288 DAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       288 ~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      +||.|+.|++.|...+.|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            5677777777777777777777665

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.89  E-value=5.5e-06  Score=44.24  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=18.6

Q ss_pred             CCccccccchhccCChhHHHHHHhhC
Q psy3231         287 EDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       287 ~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      ++||.|+.|++.|...+.|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            35677777777777777777777665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.89  E-value=1e-05  Score=53.81  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             cCCCCccccccchhccCChhHHHHHHhhCC-CcccCCccC
Q psy3231         284 HNKEDAYVCNYCYDSFETKSTLVDHFFHHG-NPYMCNHCF  322 (420)
Q Consensus       284 H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~C~~C~  322 (420)
                      |.+++||.|.+|++.|.....|..|+++|. ....+.+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSCCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcccccccc
Confidence            566777777777777777777777777773 444444443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.86  E-value=5.9e-06  Score=44.87  Aligned_cols=27  Identities=33%  Similarity=0.584  Sum_probs=22.7

Q ss_pred             cccccc--ccccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCR--YCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            367888  899999999999999988874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.83  E-value=8e-06  Score=50.81  Aligned_cols=25  Identities=28%  Similarity=0.683  Sum_probs=10.4

Q ss_pred             CCCccccccccccccCchHHHHHHh
Q psy3231         120 LQKKYKCKLCARMYRYKWNLKAHLK  144 (420)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~  144 (420)
                      ++++|.|.+|++.|.....|..|++
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhh
Confidence            3344444444444444444444444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.79  E-value=1.4e-05  Score=43.32  Aligned_cols=27  Identities=30%  Similarity=0.859  Sum_probs=17.5

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      ||.|++|++.|.....|..|++. |.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-HSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hcCC
Confidence            56666777777777777777665 5443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.00  E-value=3e-06  Score=44.87  Aligned_cols=24  Identities=33%  Similarity=0.794  Sum_probs=23.0

Q ss_pred             cceecchhhHHHHhhhhhhhhhcc
Q psy3231           4 KTYTCDFCSAAFALKHSIADHIQT   27 (420)
Q Consensus         4 k~~~C~~C~~~f~~~~~l~~H~~~   27 (420)
                      +||.|++|++.|.....|..|++.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            689999999999999999999987

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.76  E-value=1.1e-05  Score=43.34  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             CCccccccchhccCChhHHHHHHhhC
Q psy3231         287 EDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       287 ~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      ++||.|++|++.|.....|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhc
Confidence            35677777777777777777777766

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.75  E-value=1.6e-05  Score=43.04  Aligned_cols=24  Identities=21%  Similarity=0.596  Sum_probs=10.5

Q ss_pred             cccccccccccCchHHHHHHhhcc
Q psy3231         124 YKCKLCARMYRYKWNLKAHLKMHK  147 (420)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~  147 (420)
                      |.|+.|++.|.....|..|+++|.
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGG
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhc
Confidence            444444444444444444444443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.74  E-value=1.5e-05  Score=46.34  Aligned_cols=15  Identities=33%  Similarity=0.824  Sum_probs=5.9

Q ss_pred             CccccCCHHHHHHHH
Q psy3231         100 CPKSFDHKSNIRRHM  114 (420)
Q Consensus       100 C~~~f~~~~~l~~H~  114 (420)
                      |++.|.....|..|+
T Consensus        16 C~k~f~~~~~L~~H~   30 (37)
T 1va1_A           16 CGKVYGKTSHLRAHL   30 (37)
T ss_dssp             CCCEESCHHHHHHHH
T ss_pred             CCCccCCHHHHHHHH
Confidence            333333333333333

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.71  E-value=1.9e-05  Score=43.05  Aligned_cols=23  Identities=26%  Similarity=0.824  Sum_probs=11.6

Q ss_pred             CccccccCccccCCHHHHHHHHH
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      ++|.|+.|++.|.....|..|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            34555555555555555555544

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.86  E-value=5.5e-06  Score=45.08  Aligned_cols=27  Identities=33%  Similarity=0.726  Sum_probs=24.4

Q ss_pred             cceecchhhHHHHhhhhhhhhhcccCCC
Q psy3231           4 KTYTCDFCSAAFALKHSIADHIQTEHMG   31 (420)
Q Consensus         4 k~~~C~~C~~~f~~~~~l~~H~~~~h~~   31 (420)
                      +||.|++|++.|....+|..|++. |.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ-HTG   27 (29)
Confidence            589999999999999999999998 543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.68  E-value=2.6e-05  Score=43.11  Aligned_cols=27  Identities=37%  Similarity=0.751  Sum_probs=16.1

Q ss_pred             CccCc--chhhcCCCHHHHHHHHHhhcCCC
Q psy3231         260 FYRCS--ECEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       260 ~~~C~--~C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      ||.|+  .||+.|.....|..|+++ |+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRT-HTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTT-TSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHH-hcCC
Confidence            55665  566666666666666655 5543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.68  E-value=2e-05  Score=42.95  Aligned_cols=27  Identities=26%  Similarity=0.604  Sum_probs=17.2

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      +|.|++|++.|.....|..|++. |.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~-h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT-KHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH-HTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHH-HccC
Confidence            56666666666666666666665 4433

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.85  E-value=6e-06  Score=45.28  Aligned_cols=28  Identities=32%  Similarity=0.729  Sum_probs=25.1

Q ss_pred             ccceecchhhHHHHhhhhhhhhhcccCCC
Q psy3231           3 LKTYTCDFCSAAFALKHSIADHIQTEHMG   31 (420)
Q Consensus         3 ~k~~~C~~C~~~f~~~~~l~~H~~~~h~~   31 (420)
                      ++||.|+.|++.|....+|..|++. |.+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~-h~~   28 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI-HTG   28 (30)
Confidence            4799999999999999999999998 543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.67  E-value=2.5e-05  Score=42.65  Aligned_cols=28  Identities=25%  Similarity=0.687  Sum_probs=16.0

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      ||.|+.|++.|.....|..|+...|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            5666666666666666666632235543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.65  E-value=2.4e-05  Score=41.55  Aligned_cols=22  Identities=32%  Similarity=0.835  Sum_probs=11.3

Q ss_pred             ccCcchhhcCCCHHHHHHHHHh
Q psy3231         261 YRCSECEKRFATEDIMRQHFRN  282 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~  282 (420)
                      |.|++|++.|.....|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            4455555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=2.4e-05  Score=42.26  Aligned_cols=20  Identities=40%  Similarity=0.972  Sum_probs=8.2

Q ss_pred             cccccCccccCCHHHHHHHH
Q psy3231          95 FKCEMCPKSFDHKSNIRRHM  114 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~  114 (420)
                      |.|+.|++.|.....|..|+
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~   22 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHL   22 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHH
T ss_pred             ccCCCCCCccCChhHHHHHH
Confidence            33444444444444444443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=2.8e-05  Score=41.94  Aligned_cols=24  Identities=46%  Similarity=0.743  Sum_probs=9.9

Q ss_pred             cccccccccccCchHHHHHHhhcc
Q psy3231         124 YKCKLCARMYRYKWNLKAHLKMHK  147 (420)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~  147 (420)
                      |.|+.|++.|.....|..|++.|.
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHHhc
Confidence            334444444444444444444433

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.60  E-value=4.7e-05  Score=42.31  Aligned_cols=16  Identities=31%  Similarity=0.600  Sum_probs=6.7

Q ss_pred             cCccccCCHHHHHHHH
Q psy3231          99 MCPKSFDHKSNIRRHM  114 (420)
Q Consensus        99 ~C~~~f~~~~~l~~H~  114 (420)
                      .|++.|.....|..|+
T Consensus        10 ~C~k~f~~~~~L~~H~   25 (32)
T 1zfd_A           10 GCDKAFVRNHDLIRHK   25 (32)
T ss_dssp             TCCCCBSSSHHHHHHH
T ss_pred             CCCCccCCHHHHHHHH
Confidence            3444444444444443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.50  E-value=1.2e-05  Score=49.66  Aligned_cols=31  Identities=29%  Similarity=0.653  Sum_probs=14.8

Q ss_pred             hccCCCccccc--cccccccChHHHHHHHHHhc
Q psy3231         145 MHKGPKIFTCA--QCDKAFSLKSNLSKHVRHHM  175 (420)
Q Consensus       145 ~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~  175 (420)
                      .|.+++||.|.  .|++.|.....|..|++.|.
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            34444455553  35555555555555544443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.19  E-value=0.00014  Score=39.10  Aligned_cols=24  Identities=38%  Similarity=0.656  Sum_probs=17.5

Q ss_pred             ccccc--cchhccCChhHHHHHHhhC
Q psy3231         289 AYVCN--YCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       289 ~~~C~--~C~~~f~~~~~l~~H~~~h  312 (420)
                      ||.|+  .|++.|...+.|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            56777  7777777777777777666

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.00076  Score=44.46  Aligned_cols=46  Identities=22%  Similarity=0.400  Sum_probs=27.4

Q ss_pred             cCccccCCHHHHHHHHHHhcCCCC------ccccc--cccccccCchHHHHHHh
Q psy3231          99 MCPKSFDHKSNIRRHMAATHDLQK------KYKCK--LCARMYRYKWNLKAHLK  144 (420)
Q Consensus        99 ~C~~~f~~~~~l~~H~~~~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~  144 (420)
                      .|++.|.+...|..|+...|.+.+      +|.|.  .|++.+.....|..|++
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir   61 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN   61 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcc
Confidence            377788888888888765676544      44453  45544444444555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.00075  Score=44.49  Aligned_cols=47  Identities=21%  Similarity=0.366  Sum_probs=37.9

Q ss_pred             chhhcCCCHHHHHHHHHhhcCCCC------ccccc--cchhccCChhHHHHHHhh
Q psy3231         265 ECEKRFATEDIMRQHFRNYHNKED------AYVCN--YCYDSFETKSTLVDHFFH  311 (420)
Q Consensus       265 ~C~~~f~~~~~l~~H~~~~H~~~~------~~~C~--~C~~~f~~~~~l~~H~~~  311 (420)
                      .|++.|.+...|..|+...|.+.+      +|.|.  .|+..+.....|..|++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            388888888889989866686654      78897  588888888888888865

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.89  E-value=0.0018  Score=52.37  Aligned_cols=141  Identities=17%  Similarity=0.395  Sum_probs=88.8

Q ss_pred             CCceecccccccccChHHHHHHhhccCCCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChh-----HHH
Q psy3231         232 ENLFKCKKCLKVFSDEIKFHLHGRAHAKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKS-----TLV  306 (420)
Q Consensus       232 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~-----~l~  306 (420)
                      +..+.|++|...|...             ..+ .||..|=.. -+...+...     ...|+.|...+....     .+.
T Consensus        16 ~~~~~C~IC~~~~~~p-------------v~~-~CgH~fC~~-Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~~~~~   75 (170)
T 3hcs_A           16 ESKYECPICLMALREA-------------VQT-PCGHRFCKA-CIIKSIRDA-----GHKCPVDNEILLENQLFPDNFAK   75 (170)
T ss_dssp             CGGGBCTTTCSBCSSE-------------EEC-TTSCEEEHH-HHHHHHHHH-----CSBCTTTCCBCCGGGCEECHHHH
T ss_pred             CCCCCCCCCChhhcCc-------------EEC-CCCCHHHHH-HHHHHHHhC-----CCCCCCCccCcchhhhhhhHHHH
Confidence            4568899998887643             343 367666543 343443331     138999987765432     111


Q ss_pred             HHHhhCCCcccC--CccCCcCCCchhhhcccCC---CcccccccccccCChhHHHHHHHHhhccCCcccccccccccccc
Q psy3231         307 DHFFHHGNPYMC--NHCFLMFPDEKNLRNHECT---SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYC  381 (420)
Q Consensus       307 ~H~~~h~~~~~C--~~C~~~f~~~~~l~~H~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C  381 (420)
                      +-+  -.-...|  .-|+..+ ....|..|+..   .+..|+.|+..+ .+..|..|+..        .=..++-.|++|
T Consensus        76 ~~i--~~l~v~C~n~GC~~~~-~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~--------~C~~r~~~C~~C  143 (170)
T 3hcs_A           76 REI--LSLMVKCPNEGCLHKM-ELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILK--------DCPRRQVSCDNC  143 (170)
T ss_dssp             HHH--HTSEEECCSTTCCCEE-EGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHH--------TCTTCEEECTTT
T ss_pred             HHH--hhcccCCCCCCCCcee-cHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhh--------hCCCCCeECCCC
Confidence            111  1345567  4576654 35678888865   677899999988 67889999864        222334569999


Q ss_pred             ccccCChhHHHHHHhhhcCCcccc
Q psy3231         382 QRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       382 ~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                      +..+ ....|..|+.+++|+.++.
T Consensus       144 ~~~~-~~~~l~~H~~~~~~~~~~~  166 (170)
T 3hcs_A          144 AASM-AFEDKEIHDQNCPLALEHH  166 (170)
T ss_dssp             CCEE-EGGGHHHHHTTCCC-----
T ss_pred             CCcc-CHHHHHhHHHhCcChhhhh
Confidence            9988 5578899999999987653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.57  E-value=0.0016  Score=49.68  Aligned_cols=22  Identities=18%  Similarity=0.471  Sum_probs=14.6

Q ss_pred             CccccccchhccCChhHHHHHH
Q psy3231         288 DAYVCNYCYDSFETKSTLVDHF  309 (420)
Q Consensus       288 ~~~~C~~C~~~f~~~~~l~~H~  309 (420)
                      +++.|.+|+..|.+.+.+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHH
Confidence            4566666666666666666665

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.40  E-value=0.0034  Score=47.81  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             ccccccccccccccCChhHHHHHHh
Q psy3231         372 LKTLQKCRYCQRMFRNEDKLTAHEL  396 (420)
Q Consensus       372 ~~~~~~C~~C~~~f~~~~~l~~H~~  396 (420)
                      +...|.|..|+..|.+...|..|+.
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            4467899999999999999999985

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.82  E-value=0.0069  Score=48.90  Aligned_cols=141  Identities=16%  Similarity=0.310  Sum_probs=81.1

Q ss_pred             CccccccccccccChHHHHHHHHHhcCCCCCcchhhhccCCHHHHHHHHHhhCCCccccCCCccccCCHHHHHccccccC
Q psy3231         150 KIFTCAQCDKAFSLKSNLSKHVRHHMENVKQCKICLEIFEDDEVLEEHVKSHQNRRFKCPCCERIFTSETRMRNHIDMKH  229 (420)
Q Consensus       150 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~l~~H~~~~h  229 (420)
                      ..+.|++|...|...              ..+ .||-.|-.. -+...+...   ...||.|...+.....+..-....-
T Consensus        17 ~~~~C~IC~~~~~~p--------------v~~-~CgH~fC~~-Ci~~~~~~~---~~~CP~Cr~~~~~~~~~~~~~~~~~   77 (170)
T 3hcs_A           17 SKYECPICLMALREA--------------VQT-PCGHRFCKA-CIIKSIRDA---GHKCPVDNEILLENQLFPDNFAKRE   77 (170)
T ss_dssp             GGGBCTTTCSBCSSE--------------EEC-TTSCEEEHH-HHHHHHHHH---CSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred             CCCCCCCCChhhcCc--------------EEC-CCCCHHHHH-HHHHHHHhC---CCCCCCCccCcchhhhhhhHHHHHH
Confidence            457888888776542              222 355555432 222222221   2378888877654311100000001


Q ss_pred             CCCCceec--ccccccccChHHHHHHhhccC-CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHH
Q psy3231         230 ADENLFKC--KKCLKVFSDEIKFHLHGRAHA-KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLV  306 (420)
Q Consensus       230 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~-~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~  306 (420)
                      ..+....|  .-|+..+. ...+..|...-. .+..|+.|+..+ ....|..|+.. .-..++..|+.|+..+. ...|.
T Consensus        78 i~~l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~-~C~~r~~~C~~C~~~~~-~~~l~  153 (170)
T 3hcs_A           78 ILSLMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILK-DCPRRQVSCDNCAASMA-FEDKE  153 (170)
T ss_dssp             HHTSEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHH-TCTTCEEECTTTCCEEE-GGGHH
T ss_pred             HhhcccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhh-hCCCCCeECCCCCCccC-HHHHH
Confidence            11344566  35666543 456777775433 677888888877 55668888765 45567788888888775 46788


Q ss_pred             HHHhhCC
Q psy3231         307 DHFFHHG  313 (420)
Q Consensus       307 ~H~~~h~  313 (420)
                      .|...+.
T Consensus       154 ~H~~~~~  160 (170)
T 3hcs_A          154 IHDQNCP  160 (170)
T ss_dssp             HHHTTCC
T ss_pred             hHHHhCc
Confidence            8887763

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.79  E-value=0.0031  Score=47.08  Aligned_cols=29  Identities=28%  Similarity=0.411  Sum_probs=25.0

Q ss_pred             cccccccccccccccccCChhHHHHHHhh
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      .++|.++|.|..|++.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            46677899999999999999999999874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.43  E-value=0.02  Score=42.73  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=27.0

Q ss_pred             cCCCCCccCCccccccCccccCCHHHHHHHHH
Q psy3231          84 PAQGKSIQERKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        84 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      +...+..++++|.|..|++.|.+...|..|++
T Consensus        40 ~~ded~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           40 EFDPDLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SSCSSSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             cccccCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            34455778899999999999999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.86  E-value=0.12  Score=30.58  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             CccccccCccccCCHHHHHHHHH
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      .+|.|+.|+..|+....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            67889999999999999999987

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.81  E-value=0.038  Score=30.61  Aligned_cols=28  Identities=21%  Similarity=0.570  Sum_probs=21.3

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      .|.||+|.+.|.+...|..|....|...
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccC
Confidence            3778888888888888888887777643

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.69  E-value=0.051  Score=32.17  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=15.8

Q ss_pred             ccccccccccccCChhHHHHHHhh
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      ..|.|+.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            456666666666666666666664

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.82  E-value=0.087  Score=29.15  Aligned_cols=27  Identities=33%  Similarity=0.632  Sum_probs=24.2

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcCC
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHDL  120 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  120 (420)
                      .|.|++|-+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            399999999999999999999888864

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.12  E-value=0.51  Score=25.09  Aligned_cols=25  Identities=28%  Similarity=0.749  Sum_probs=22.5

Q ss_pred             ccccCccccCCHHHHHHHHHHhcCC
Q psy3231          96 KCEMCPKSFDHKSNIRRHMAATHDL  120 (420)
Q Consensus        96 ~C~~C~~~f~~~~~l~~H~~~~h~~  120 (420)
                      -|.+|.+.+++-.+|..|++..|..
T Consensus        11 hcrfckkkysdvknlikhire~hd~   35 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAHDP   35 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5999999999999999999987754

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=85.34  E-value=0.51  Score=25.10  Aligned_cols=20  Identities=50%  Similarity=0.974  Sum_probs=18.3

Q ss_pred             ccccccccCChhHHHHHHHH
Q psy3231         342 CPFCQRKYKIEKHLEKHIES  361 (420)
Q Consensus       342 C~~C~~~f~~~~~l~~H~~~  361 (420)
                      |.+|.+.|+.-.+|..|++.
T Consensus        12 crfckkkysdvknlikhire   31 (37)
T 2elu_A           12 CRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             ETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999886

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=84.91  E-value=0.97  Score=25.05  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=16.1

Q ss_pred             CccccccCccccCCHHHHHHHHH
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      ..+.|..|+.+|++...+..|.+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            44667777777777777777754

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=84.89  E-value=0.96  Score=25.07  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=15.1

Q ss_pred             CccccccccccccCchHHHHHHhh
Q psy3231         122 KKYKCKLCARMYRYKWNLKAHLKM  145 (420)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~  145 (420)
                      ..+.|..|+..|.+..++..|.+.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            345666666666666666666553

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=82.52  E-value=2  Score=26.21  Aligned_cols=47  Identities=17%  Similarity=0.440  Sum_probs=29.5

Q ss_pred             cccccCccccCCHHHHHHHHHHhcCCCCcccccccc-ccccCchHHHHHHhh
Q psy3231          95 FKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCA-RMYRYKWNLKAHLKM  145 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~  145 (420)
                      -.|++|.....+...|..|...--.    -.|++|- ....+.+.|+.|.+.
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~----gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCIN----GQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTT----TBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCC----CCCCcccCcCCcCHHHHHHHHHH
Confidence            3577777777777777777664332    2566663 344566667777653

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=82.49  E-value=0.92  Score=30.41  Aligned_cols=38  Identities=21%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             cccccccccccCchHHHHHHhhccCCCcccccccccccc
Q psy3231         124 YKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFS  162 (420)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  162 (420)
                      |.|..|+.++. +..|..|...-.+...|.|-.|+..|.
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeC
Confidence            44555554443 233444544433333455555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	6e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.002
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	9e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-04
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.002
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.004
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (96), Expect = 6e-06
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKL 128
            + + C+ C K F    ++  H+   H  ++ +KC++
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 122 KKYKCKLCARMYRYKWNLKAHLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           K Y C+ C + + +K     H+ MH G + + C  C K F +K +L  H++ H
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATHDLQKKYKCKLCARMYRYKWNLKAHLKMH 146
           ++ + C+ C KSF HKS   RHM+      + Y C +C + ++ K +L  H+K+H
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (90), Expect = 4e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 144 KMHKGPKIFTCAQCDKAFSLKSNLSKHV-RHHMENV 178
           + H G K + C  C   F+    +  H+ + H ENV
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 92  ERKFKCEMCPKSFDHKSNIRRHMAATH 118
           E+ ++C +C   F     ++ H+   H
Sbjct: 6   EKPYECYICHARFTQSGTMKMHILQKH 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (87), Expect = 9e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 145 MHKGPKIFTCAQCDKAFSLKSNLSKHVRHH 174
           +H G K + C +C KAFS  S L +H R H
Sbjct: 1   IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM 175
             +   G K F C  CD++FS   +L+ H + HM
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 144 KMHKGPKIFTCAQCDKAFSLKSNLSKHVR-HHMEN 177
           + H G K + C+ CDK F  K  L  H + +H  N
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
           K F C  C + FS   +L+ H+R H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTH 26

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 150 KIFTCAQCDKAFSLKSNLSKHVRHH 174
           + F C  C +AF+ + +L +H R H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSH 25

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 146 HKGPKIFTCAQCDKAFSLKSNLSKHVRHHMENV 178
             G + F C  C  AF+ K+N ++H++ H + +
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.51
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.13
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.09
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.08
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.03
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.0
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.99
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.93
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.87
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.84
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.84
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.82
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.82
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.82
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.81
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.79
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.79
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.79
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.73
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.65
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.6
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.59
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.59
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.55
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.51
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.45
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.43
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.43
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.37
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.24
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.24
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.18
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.13
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.1
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.0
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.93
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.92
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.91
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.88
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.86
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.86
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.85
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.67
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.64
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.59
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.45
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.41
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.33
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.28
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.19
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.16
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.14
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.12
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.11
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.09
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.04
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.99
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.97
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.94
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.91
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.78
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.77
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.75
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.75
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.7
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.6
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.52
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.47
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.25
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.25
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.85
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.56
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.35
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.31
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.22
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.12
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.11
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.06
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.58
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.38
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.37
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.26
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.18
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.06
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.06
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	93.04
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.97
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.69
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.35
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.12
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.13
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.12
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.12
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	89.24
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	87.73
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.16
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.64
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	84.69
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	83.05
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.02
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	82.02
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	80.76
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	80.58
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	80.31
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.28

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.7e-15  Score=94.36  Aligned_cols=52  Identities=33%  Similarity=0.627  Sum_probs=48.7

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCCCccccccchhccCChhHHHHHHhhC
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      +||+|. ||+.|.....|..|+++ |++++||.|++||++|...+.|..|+++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~-Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHH-HSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhc-cccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689994 99999999999999886 99999999999999999999999999887

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.1e-15  Score=93.04  Aligned_cols=52  Identities=17%  Similarity=0.485  Sum_probs=44.9

Q ss_pred             CcccccccccccCChhHHHHHHHHhhccCCccccccccccccccccccCChhHHHHHHhhh
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESCIQLNPTTTVLKTLQKCRYCQRMFRNEDKLTAHELSH  398 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H  398 (420)
                      +||.|. ||++|.....|..|+++        +++++||.|.+||++|...+.|..||++|
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~~--------Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMSM--------HLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHHH--------HSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhhc--------cccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            688884 88888888888888887        77888888999999999999999988877

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4e-13  Score=76.86  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=33.4

Q ss_pred             cccccccccccccCChhHHHHHHh-hhcCCccccccc
Q psy3231         373 KTLQKCRYCQRMFRNEDKLTAHEL-SHTMEKTFYRNV  408 (420)
Q Consensus       373 ~~~~~C~~C~~~f~~~~~l~~H~~-~H~~~~~~~c~~  408 (420)
                      ++||+|..||++|...+.|+.||+ +|+|||||.|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            579999999999999999999986 799999999975

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.13  E-value=1.1e-11  Score=65.77  Aligned_cols=29  Identities=38%  Similarity=0.590  Sum_probs=27.3

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +||.|++|+++|+..+.|++|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.2e-11  Score=70.66  Aligned_cols=37  Identities=30%  Similarity=0.620  Sum_probs=31.2

Q ss_pred             CCCccCcchhhcCCCHHHHHHHHHhhcCCCCcccccc
Q psy3231         258 AKFYRCSECEKRFATEDIMRQHFRNYHNKEDAYVCNY  294 (420)
Q Consensus       258 ~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  294 (420)
                      .+||+|.+||+.|.....|.+|++..|++++||+|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4788888888888888999999876689999998874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.1e-11  Score=66.70  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCC
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      +++++||+|..||++|...+.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            78899999999999999999999999999987

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.9e-11  Score=64.04  Aligned_cols=29  Identities=28%  Similarity=0.487  Sum_probs=27.1

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +||.|++||++|..++.|..|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.5e-11  Score=67.42  Aligned_cols=33  Identities=18%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             ccccc--cccccCChhHHHHHHhhhcCCccccccc
Q psy3231         376 QKCRY--CQRMFRNEDKLTAHELSHTMEKTFYRNV  408 (420)
Q Consensus       376 ~~C~~--C~~~f~~~~~l~~H~~~H~~~~~~~c~~  408 (420)
                      |.|+.  |+++|..++.|++|+++|+||+||.|..
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67887  9999999999999999999999999963

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1e-10  Score=66.87  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCC
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      .+++++||+|+.||++|...++|..|+++|+||
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            488999999999999999999999999999997

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.2e-11  Score=62.30  Aligned_cols=28  Identities=39%  Similarity=0.643  Sum_probs=24.8

Q ss_pred             cccccccccccccCChhHHHHHHhhhcC
Q psy3231         373 KTLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       373 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ++||+|+.|+++|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3689999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1e-10  Score=64.89  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             ccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      ++|++||+|.+|++.|++++.|++|+++|+++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            578999999999999999999999999998753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-10  Score=64.44  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      .+++++||+|.+||++|...+.|+.|+++|+++.
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            4889999999999999999999999999998763

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=2.3e-10  Score=64.89  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             HHHhhcCCCCccccccchhccCChhHHHHHHhhCC
Q psy3231         279 HFRNYHNKEDAYVCNYCYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       279 H~~~~H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  313 (420)
                      |.++ |++++||+|++|+++|..++.|..|+++|-
T Consensus         2 h~R~-HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRG-STGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSST-TCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCc-cCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            4455 999999999999999999999999998883

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.8e-10  Score=58.98  Aligned_cols=28  Identities=32%  Similarity=0.659  Sum_probs=25.7

Q ss_pred             ccccccc--cccccCChhHHHHHHhhhcCC
Q psy3231         374 TLQKCRY--CQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      +||+|++  |+++|...+.|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899998  999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1e-09  Score=61.69  Aligned_cols=33  Identities=33%  Similarity=0.688  Sum_probs=19.2

Q ss_pred             hccCCCccccccccccccChHHHHHHHHHhcCC
Q psy3231         145 MHKGPKIFTCAQCDKAFSLKSNLSKHVRHHMEN  177 (420)
Q Consensus       145 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  177 (420)
                      +|+|++||.|.+||+.|.....|..|+++|.++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            455566666666666666666666666555543

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1e-09  Score=59.85  Aligned_cols=31  Identities=29%  Similarity=0.589  Sum_probs=14.9

Q ss_pred             cCCCCccccccccccccCchHHHHHHhhccC
Q psy3231         118 HDLQKKYKCKLCARMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       118 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (420)
                      |++++||.|..|++.|...++|..|+++|+|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            4444444444444444444444444444444

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.2e-10  Score=59.29  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=25.3

Q ss_pred             ccccccc--cccccCChhHHHHHHhhhcCC
Q psy3231         374 TLQKCRY--CQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      +||.|++  |+++|+..+.|++|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5789988  999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=8.3e-10  Score=61.10  Aligned_cols=31  Identities=26%  Similarity=0.600  Sum_probs=27.8

Q ss_pred             cCCCCccccccchhccCChhHHHHHHhhCCC
Q psy3231         284 HNKEDAYVCNYCYDSFETKSTLVDHFFHHGN  314 (420)
Q Consensus       284 H~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  314 (420)
                      |+|++||+|++|++.|..++.|..|+++|.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            7889999999999999999999999999854

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1e-09  Score=58.99  Aligned_cols=29  Identities=38%  Similarity=0.678  Sum_probs=26.4

Q ss_pred             cccccc--ccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCR--YCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~--~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +||.|+  .|+++|+..+.|++|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589996  59999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=6.8e-10  Score=62.89  Aligned_cols=34  Identities=35%  Similarity=0.699  Sum_probs=23.3

Q ss_pred             HHhhccCCCccccccccccccChHHHHHHHHHhc
Q psy3231         142 HLKMHKGPKIFTCAQCDKAFSLKSNLSKHVRHHM  175 (420)
Q Consensus       142 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  175 (420)
                      |.+.|+|++||.|++|++.|.....|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            4566677777777777777777777777776664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.2e-10  Score=56.23  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             ccccccccccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      +||+|..||++|...+.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            47778888888888888888888774

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.4e-09  Score=60.98  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcCC
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      .++|++||+|++|+++|+..++|+.|++.++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            478999999999999999999999998765544

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.9e-10  Score=64.00  Aligned_cols=32  Identities=25%  Similarity=0.651  Sum_probs=14.6

Q ss_pred             hcCCCCccccccccccccCchHHHHHHhhccC
Q psy3231         117 THDLQKKYKCKLCARMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       117 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (420)
                      .|.+++||.|++||+.|...++|..|+++|+|
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            34444444444444444444444444444443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.73  E-value=3.3e-09  Score=56.07  Aligned_cols=29  Identities=28%  Similarity=0.836  Sum_probs=21.1

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCCC
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKED  288 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  288 (420)
                      +||+|++|++.|...+.|.+|+++ |+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            467777777777777777777776 77664

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.8e-09  Score=64.48  Aligned_cols=33  Identities=15%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             ccccccccccc--cccccCChhHHHHHHhhhcCCc
Q psy3231         370 TVLKTLQKCRY--CQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       370 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.+++||+|.+  |+++|...+.|+.|+++|+|||
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            78889999988  9999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.6e-09  Score=54.74  Aligned_cols=29  Identities=34%  Similarity=0.817  Sum_probs=19.9

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCCC
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKED  288 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  288 (420)
                      +||.|++||+.|...+.|.+|+++ |++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            467777777777777777777766 66653

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.3e-09  Score=58.33  Aligned_cols=33  Identities=27%  Similarity=0.885  Sum_probs=28.1

Q ss_pred             ccCcc--hhhcCCCHHHHHHHHHhhcCCCCcccccc
Q psy3231         261 YRCSE--CEKRFATEDIMRQHFRNYHNKEDAYVCNY  294 (420)
Q Consensus       261 ~~C~~--C~~~f~~~~~l~~H~~~~H~~~~~~~C~~  294 (420)
                      |.|+.  |++.|.....|.+|+++ |++++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCCEeCCC
Confidence            67765  99999999999999887 99999999863

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=8.2e-09  Score=53.76  Aligned_cols=20  Identities=25%  Similarity=0.787  Sum_probs=7.1

Q ss_pred             ccccccccccCchHHHHHHh
Q psy3231         125 KCKLCARMYRYKWNLKAHLK  144 (420)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~  144 (420)
                      .|++|++.|....+|..|++
T Consensus         5 ~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           5 QCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             ECTTTCCEESCHHHHHHHHH
T ss_pred             cCCCCcCEecccccccccCC
Confidence            33333333333333333333

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.3e-08  Score=56.94  Aligned_cols=28  Identities=25%  Similarity=0.617  Sum_probs=16.2

Q ss_pred             hccCCCccccccccccccChHHHHHHHH
Q psy3231         145 MHKGPKIFTCAQCDKAFSLKSNLSKHVR  172 (420)
Q Consensus       145 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~  172 (420)
                      +|+|++||.|++|++.|....+|..|++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            4555555666556665655555555543

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=8.9e-09  Score=54.04  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=23.4

Q ss_pred             ccccccc--cccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCRY--CQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  400 (420)
                      +||+|++  |+++|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4788987  99999999999999999886

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2e-08  Score=47.86  Aligned_cols=26  Identities=38%  Similarity=0.680  Sum_probs=23.6

Q ss_pred             cccccccccccCChhHHHHHHhhhcC
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      |.+|+.|++-|+.+..|+.|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46899999999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.8e-08  Score=50.25  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=23.1

Q ss_pred             CcccccccccccCChhHHHHHHHHh
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESC  362 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~  362 (420)
                      +||+|..||++|...+.|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            6899999999999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=5.2e-08  Score=52.40  Aligned_cols=29  Identities=24%  Similarity=0.486  Sum_probs=24.7

Q ss_pred             cccccccc--cccccCChhHHHHHHhhhcCC
Q psy3231         373 KTLQKCRY--CQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       373 ~~~~~C~~--C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      ++||.|++  |+++|+..+.|++|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            36889988  999999999999999999854

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.2e-08  Score=51.21  Aligned_cols=26  Identities=27%  Similarity=0.667  Sum_probs=20.6

Q ss_pred             ccccccc--cccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRY--CQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~~~H~  399 (420)
                      +||.|++  |+++|+..+.|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4777877  8888888888888888875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.7e-08  Score=47.87  Aligned_cols=29  Identities=38%  Similarity=0.527  Sum_probs=26.8

Q ss_pred             cccccccccccccCChhHHHHHHhhhcCC
Q psy3231         373 KTLQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       373 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      ++||+|..|.+...+.++|..|+|+|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            36899999999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-07  Score=50.23  Aligned_cols=28  Identities=29%  Similarity=0.656  Sum_probs=17.3

Q ss_pred             CCccCcc--hhhcCCCHHHHHHHHHhhcCCC
Q psy3231         259 KFYRCSE--CEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       259 ~~~~C~~--C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      +||+|++  |++.|...+.|.+|+++ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcCC
Confidence            3566655  66666666666666665 6553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.7e-07  Score=48.19  Aligned_cols=30  Identities=37%  Similarity=0.735  Sum_probs=28.0

Q ss_pred             ccccccccccCChhHHHHHHhhhcCCcccc
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHTMEKTFY  405 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~  405 (420)
                      ..|..||+.|.+...|.+|..+|+|||||.
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            469999999999999999999999999984

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.2e-07  Score=49.01  Aligned_cols=29  Identities=34%  Similarity=0.736  Sum_probs=20.4

Q ss_pred             CCccCc--chhhcCCCHHHHHHHHHhhcCCCC
Q psy3231         259 KFYRCS--ECEKRFATEDIMRQHFRNYHNKED  288 (420)
Q Consensus       259 ~~~~C~--~C~~~f~~~~~l~~H~~~~H~~~~  288 (420)
                      +||.|+  .|++.|...+.|.+|+++ |++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            467774  477777777777777776 77664

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2e-07  Score=49.35  Aligned_cols=20  Identities=30%  Similarity=0.979  Sum_probs=8.4

Q ss_pred             ccccccCchHHHHHHhhccC
Q psy3231         129 CARMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       129 C~~~f~~~~~l~~H~~~h~~  148 (420)
                      |++.|....+|..|+++|+|
T Consensus        10 Cgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3          10 CGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCCEESCHHHHHHHHHHHHC
T ss_pred             CCceECcHHHcCccccccCC
Confidence            44444444444444444433

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=2.2e-07  Score=55.22  Aligned_cols=32  Identities=19%  Similarity=0.693  Sum_probs=16.8

Q ss_pred             cCCCCcccccc--ccccccCchHHHHHHhhccCC
Q psy3231         118 HDLQKKYKCKL--CARMYRYKWNLKAHLKMHKGP  149 (420)
Q Consensus       118 h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  149 (420)
                      |.+++||.|.+  |++.|....+|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            44555555544  555555555555555555544

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=5.3e-07  Score=48.36  Aligned_cols=27  Identities=26%  Similarity=0.591  Sum_probs=23.3

Q ss_pred             CCcccccc--chhccCChhHHHHHHhhCC
Q psy3231         287 EDAYVCNY--CYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       287 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~  313 (420)
                      |+||.|++  |+++|...+.|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            57899988  9999999999999988885

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1e-06  Score=43.42  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             ccccccccccCChhHHHHHHhhhcCCc
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      |.|++|+......+-|+.|+|+|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999875

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1e-06  Score=45.39  Aligned_cols=25  Identities=32%  Similarity=0.840  Sum_probs=22.6

Q ss_pred             Ccccccc--cccccCChhHHHHHHHHh
Q psy3231         338 SCFTCPF--CQRKYKIEKHLEKHIESC  362 (420)
Q Consensus       338 ~~~~C~~--C~~~f~~~~~l~~H~~~~  362 (420)
                      +||.|++  ||++|+..++|..|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            5899998  999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=3e-06  Score=40.52  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=24.1

Q ss_pred             cccccccccCChhHHHHHHhhhcCCc
Q psy3231         377 KCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       377 ~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      .|+.|.++|.++.-|+.|-|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            49999999999999999999999985

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.9e-06  Score=43.11  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=18.7

Q ss_pred             CCccccccchhccCChhHHHHHHhhCC
Q psy3231         287 EDAYVCNYCYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       287 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  313 (420)
                      ++||.|++|+..|..+..+..|+++|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            456777777777777777777777663

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.6e-06  Score=41.37  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=23.8

Q ss_pred             ccccccccccCChhHHHHHHhhhcCC
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      ..|..||++|...+.|++|+.+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45999999999999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.91  E-value=3.5e-06  Score=39.57  Aligned_cols=24  Identities=33%  Similarity=0.711  Sum_probs=21.9

Q ss_pred             ccccccccccCChhHHHHHHhhhc
Q psy3231         376 QKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       376 ~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      |+|..|.++|..+++|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999885

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.9e-06  Score=41.07  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             ccccccccccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      +||+|..|++.-.+.++|..|+|+|+
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57888888888888888888888886

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.9e-06  Score=39.54  Aligned_cols=22  Identities=32%  Similarity=0.753  Sum_probs=11.1

Q ss_pred             ccCcchhhcCCCHHHHHHHHHh
Q psy3231         261 YRCSECEKRFATEDIMRQHFRN  282 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~  282 (420)
                      .+|+.|++.|+.+..|..|++.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            3455555555555555555544

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.2e-06  Score=41.83  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=21.1

Q ss_pred             ccccccccccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      +||.|++|+..|..+..+.-|.|+|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            577788888888888888888887766

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=3.6e-06  Score=41.53  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=18.0

Q ss_pred             CCccccccchhccCChhHHHHHHhhC
Q psy3231         287 EDAYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       287 ~~~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      ++||.|.+||+.|.......+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46677777777777777777776665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=3.6e-06  Score=41.51  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             ccccccccccccCChhHHHHHHhhhc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~  399 (420)
                      +||.|.+||+.|....+.++|.++|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            46677777777777777777777663

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.9e-06  Score=42.34  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=24.9

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCCCCccc
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNKEDAYV  291 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~  291 (420)
                      ...|..||+.|.....|.+|..+ |++++||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhkls-hs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLS-HSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-SCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcc-cCCCCCCC
Confidence            45688888888888888888776 88888873

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1e-05  Score=39.91  Aligned_cols=28  Identities=25%  Similarity=0.538  Sum_probs=21.5

Q ss_pred             ccccccccccccCChhHHHHHHhh-hcCC
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELS-HTME  401 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~-H~~~  401 (420)
                      +||.|.+|++...+.++|+.|+++ |+.|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            478888888888888888888874 5444

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1e-05  Score=40.58  Aligned_cols=27  Identities=15%  Similarity=0.364  Sum_probs=19.4

Q ss_pred             ccccccc--cccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCRY--CQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~~~H~~  400 (420)
                      +||.|.+  |+++++..++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3677776  77777777777777776554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.6e-05  Score=38.97  Aligned_cols=28  Identities=39%  Similarity=0.635  Sum_probs=25.5

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCC
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      ..|.|..|...|...-.|+.||.+|+||
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4578999999999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.8e-05  Score=38.59  Aligned_cols=26  Identities=35%  Similarity=0.768  Sum_probs=11.4

Q ss_pred             ccccccccccccCchHHHHHHhhccC
Q psy3231         123 KYKCKLCARMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (420)
                      ||+|.+|.+.-.+.+.|..|++.|+|
T Consensus         3 pfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           3 PFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             cceeeecccccCCchheEEeeecccC
Confidence            44444444444444444444444443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.4e-05  Score=38.57  Aligned_cols=29  Identities=38%  Similarity=0.697  Sum_probs=23.5

Q ss_pred             CCccCcchhhcCCCHHHHHHHHHhhcCCC
Q psy3231         259 KFYRCSECEKRFATEDIMRQHFRNYHNKE  287 (420)
Q Consensus       259 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  287 (420)
                      +||+|..|.......+.|..|+++.|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            47888888888888888888888877765

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=5.4e-05  Score=37.17  Aligned_cols=27  Identities=30%  Similarity=0.715  Sum_probs=22.6

Q ss_pred             ccCcchhhcCCCHHHHHHHHHhhcCCCC
Q psy3231         261 YRCSECEKRFATEDIMRQHFRNYHNKED  288 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~~H~~~~  288 (420)
                      |.|+.||......+.|+.|+++ |++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs-HT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT-HTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHH-hcCCC
Confidence            7788888888888999999887 87763

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=3.8e-05  Score=41.71  Aligned_cols=29  Identities=28%  Similarity=0.623  Sum_probs=25.8

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCc
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEK  402 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~  402 (420)
                      +.|+|.+|++.|.+..+|--||+.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            45899999999999999999999998765

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8.7e-06  Score=44.30  Aligned_cols=26  Identities=27%  Similarity=0.747  Sum_probs=23.9

Q ss_pred             CcccceecchhhHHHHhhhhhhhhhc
Q psy3231           1 MTLKTYTCDFCSAAFALKHSIADHIQ   26 (420)
Q Consensus         1 ~~~k~~~C~~C~~~f~~~~~l~~H~~   26 (420)
                      +|.|||.|.+|++.|.++.++.+|.-
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            57899999999999999999999964

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=6.6e-05  Score=37.56  Aligned_cols=26  Identities=35%  Similarity=0.774  Sum_probs=15.3

Q ss_pred             CCccCcc--hhhcCCCHHHHHHHHHhhc
Q psy3231         259 KFYRCSE--CEKRFATEDIMRQHFRNYH  284 (420)
Q Consensus       259 ~~~~C~~--C~~~f~~~~~l~~H~~~~H  284 (420)
                      +||.|.+  |++++...+.|+.|++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            3555544  6666666666666666544

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.19  E-value=8.4e-05  Score=37.50  Aligned_cols=27  Identities=26%  Similarity=0.679  Sum_probs=21.6

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNK  286 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  286 (420)
                      ||.|.+|++.|..+..|.+|....|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            678888888888888888888777765

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=7.7e-05  Score=36.57  Aligned_cols=23  Identities=35%  Similarity=0.664  Sum_probs=19.3

Q ss_pred             cccccccccccCChhHHHHHHhh
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      ||.|..|.++|..+.+|..||.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            57888888888888888888874

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.14  E-value=0.00012  Score=34.21  Aligned_cols=23  Identities=43%  Similarity=0.676  Sum_probs=16.8

Q ss_pred             cccccchhccCChhHHHHHHhhC
Q psy3231         290 YVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       290 ~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      |+|..|..+|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            56777777777777777777766

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00011  Score=35.54  Aligned_cols=24  Identities=29%  Similarity=0.618  Sum_probs=13.9

Q ss_pred             cCcchhhcCCCHHHHHHHHHhhcCC
Q psy3231         262 RCSECEKRFATEDIMRQHFRNYHNK  286 (420)
Q Consensus       262 ~C~~C~~~f~~~~~l~~H~~~~H~~  286 (420)
                      .|.+||+.|...+.|++|+.. |++
T Consensus         4 vc~ecgkaf~essklkrh~lv-htg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLV-HTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGG-TSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhc-ccC
Confidence            455666666666666666554 554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00015  Score=35.14  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=22.5

Q ss_pred             cccccccccccCChhHHHHHHhhhcC
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      |-+|+.|.++..++.+|+.|.|+|-.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            45799999999999999999999853

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.09  E-value=0.00011  Score=35.87  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=17.9

Q ss_pred             cccccc--cccccCChhHHHHHHhhh
Q psy3231         375 LQKCRY--CQRMFRNEDKLTAHELSH  398 (420)
Q Consensus       375 ~~~C~~--C~~~f~~~~~l~~H~~~H  398 (420)
                      ||+|+.  |++.|...+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            667765  777777777777777766

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=8.9e-05  Score=37.41  Aligned_cols=28  Identities=25%  Similarity=0.520  Sum_probs=23.0

Q ss_pred             ccccccc--cccccCChhHHHHHH-hhhcCC
Q psy3231         374 TLQKCRY--CQRMFRNEDKLTAHE-LSHTME  401 (420)
Q Consensus       374 ~~~~C~~--C~~~f~~~~~l~~H~-~~H~~~  401 (420)
                      +||.|.+  |.+.|++.++-..|+ |+|+.|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            4788888  899999988888887 788754

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00015  Score=35.54  Aligned_cols=23  Identities=43%  Similarity=0.827  Sum_probs=18.7

Q ss_pred             ccccccchhccCChhHHHHHHhh
Q psy3231         289 AYVCNYCYDSFETKSTLVDHFFH  311 (420)
Q Consensus       289 ~~~C~~C~~~f~~~~~l~~H~~~  311 (420)
                      ||.|..|+.+|.++.+|..||++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            67888888888888888888765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00021  Score=34.48  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             CccccccchhccCChhHHHHHHhhCC
Q psy3231         288 DAYVCNYCYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       288 ~~~~C~~C~~~f~~~~~l~~H~~~h~  313 (420)
                      +||+|..|.+.-...+.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57777777777777777777777763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00024  Score=33.80  Aligned_cols=25  Identities=32%  Similarity=0.713  Sum_probs=16.1

Q ss_pred             ccccccccccCchHHHHHHhhccCC
Q psy3231         125 KCKLCARMYRYKWNLKAHLKMHKGP  149 (420)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~  149 (420)
                      .|+.|.+.|.++..|+.|-+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4666666666666666666666665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00022  Score=35.02  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=18.7

Q ss_pred             ccccccccccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      +||+|.+|.+-..+.++|..|++.-+|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            367777777777777777777764433

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.78  E-value=0.00037  Score=35.09  Aligned_cols=27  Identities=22%  Similarity=0.629  Sum_probs=23.5

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcCC
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHDL  120 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  120 (420)
                      ||.|.+|+..|..+..|.+|.+..|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            688999999999999999998877765

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.77  E-value=0.00029  Score=34.37  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=14.8

Q ss_pred             cccccc--chhccCChhHHHHHHhhC
Q psy3231         289 AYVCNY--CYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       289 ~~~C~~--C~~~f~~~~~l~~H~~~h  312 (420)
                      ||+|+.  |++.|...+.|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            566655  666666666666665554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00033  Score=37.56  Aligned_cols=27  Identities=22%  Similarity=0.594  Sum_probs=21.8

Q ss_pred             CCCcccccc--chhccCChhHHHHHHhhC
Q psy3231         286 KEDAYVCNY--CYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       286 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h  312 (420)
                      +++||.|+.  |+.+|.+...|..|...|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhh
Confidence            478888844  888888888888887776

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00059  Score=33.29  Aligned_cols=27  Identities=30%  Similarity=0.772  Sum_probs=16.7

Q ss_pred             CccccccCccccCCHHHHHHHHHHhcCC
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMAATHDL  120 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  120 (420)
                      ..|.|..|...|.....|+.||. .|.+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmv-shtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMV-SHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH-HHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeee-cccC
Confidence            34666666666666666666665 4443

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00055  Score=37.09  Aligned_cols=25  Identities=20%  Similarity=0.809  Sum_probs=21.1

Q ss_pred             CcccccccccccCChhHHHHHHHHh
Q psy3231         338 SCFTCPFCQRKYKIEKHLEKHIESC  362 (420)
Q Consensus       338 ~~~~C~~C~~~f~~~~~l~~H~~~~  362 (420)
                      +||.|.+|++.|-.+..+.+|...|
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhhhhh
Confidence            6888888888888888888887764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00078  Score=33.06  Aligned_cols=27  Identities=37%  Similarity=0.731  Sum_probs=20.0

Q ss_pred             CccccccCccccCCHHHHHHHHHHhcC
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMAATHD  119 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  119 (420)
                      +||+|..|..-....++|..|++..|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            467788887777778888888776654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00053  Score=32.03  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=19.7

Q ss_pred             cccccccccccCChhHHHHHHh
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHEL  396 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~  396 (420)
                      ||+|..|...|.++.+|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999984

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.47  E-value=0.00095  Score=36.08  Aligned_cols=21  Identities=24%  Similarity=0.779  Sum_probs=10.1

Q ss_pred             cccccCccccCCHHHHHHHHH
Q psy3231          95 FKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      |.|..|++.|.+..+|--||+
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~   26 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMN   26 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHH
T ss_pred             cCCCCCCCccCCcccccchHh
Confidence            444444444444444444443

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0018  Score=30.22  Aligned_cols=24  Identities=29%  Similarity=0.753  Sum_probs=19.4

Q ss_pred             ccccccCccccCCHHHHHHHHHHh
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAAT  117 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~  117 (420)
                      ||+|..|...|-.+..|+.||...
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            688888888888888888887643

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.25  E-value=0.0011  Score=32.51  Aligned_cols=27  Identities=37%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             cccccc--cccccCChhHHHHHHhhhcCC
Q psy3231         375 LQKCRY--CQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       375 ~~~C~~--C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      ||-|.+  |++.|.+...|.+|..+|+||
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            444543  777777777777777777765

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0019  Score=33.80  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=20.4

Q ss_pred             ccccccccCChhHHHHHHhhhcCC
Q psy3231         378 CRYCQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       378 C~~C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      |+-=++.|.....|..|||+|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            555567899999999999999986

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0018  Score=32.56  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=20.5

Q ss_pred             Ccccccc--chhccCChhHHHHHH-hhCC
Q psy3231         288 DAYVCNY--CYDSFETKSTLVDHF-FHHG  313 (420)
Q Consensus       288 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~  313 (420)
                      +||.|.+  |.+.|.+.++-..|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            5788877  888888888888886 7663

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0044  Score=29.74  Aligned_cols=25  Identities=24%  Similarity=0.672  Sum_probs=19.2

Q ss_pred             ccCcchhhcCCCHHHHHHHHHhhcC
Q psy3231         261 YRCSECEKRFATEDIMRQHFRNYHN  285 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~~H~  285 (420)
                      |+||.|+.....+++|+.|++..|+
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccCCcchhheeehhhhhHHhhhccc
Confidence            6788888888888888888877553

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0046  Score=29.80  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=15.9

Q ss_pred             ccccccchhccCChhHHHHHHhhC
Q psy3231         289 AYVCNYCYDSFETKSTLVDHFFHH  312 (420)
Q Consensus       289 ~~~C~~C~~~f~~~~~l~~H~~~h  312 (420)
                      |-+|+.|.++..++..|+.|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            346666776667777777766665

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.22  E-value=0.0055  Score=28.62  Aligned_cols=24  Identities=38%  Similarity=0.719  Sum_probs=16.5

Q ss_pred             ccCcchhhcCCCHHHHHHHHHhhc
Q psy3231         261 YRCSECEKRFATEDIMRQHFRNYH  284 (420)
Q Consensus       261 ~~C~~C~~~f~~~~~l~~H~~~~H  284 (420)
                      |.|+.|-+.|..+..+..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            567777777777777777766655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.12  E-value=0.0087  Score=27.94  Aligned_cols=24  Identities=33%  Similarity=0.789  Sum_probs=18.9

Q ss_pred             cccccCccccCCHHHHHHHHHHhc
Q psy3231          95 FKCEMCPKSFDHKSNIRRHMAATH  118 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~~~~h  118 (420)
                      |.|+.|-+.|..+.++..|++..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888888877655

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.0085  Score=28.61  Aligned_cols=22  Identities=18%  Similarity=0.516  Sum_probs=13.1

Q ss_pred             CccCcchhhcCCCHHHHHHHHH
Q psy3231         260 FYRCSECEKRFATEDIMRQHFR  281 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~  281 (420)
                      ||+|+.||+.+-.+..|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4566666666666666666543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.06  E-value=0.01  Score=28.34  Aligned_cols=22  Identities=32%  Similarity=0.627  Sum_probs=13.1

Q ss_pred             cccccccccccCChhHHHHHHH
Q psy3231         339 CFTCPFCQRKYKIEKHLEKHIE  360 (420)
Q Consensus       339 ~~~C~~C~~~f~~~~~l~~H~~  360 (420)
                      ||+|..||+.+-.+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4566666666666666666643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0051  Score=34.55  Aligned_cols=26  Identities=27%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             CccccccchhccCChhHHHHHHhhCC
Q psy3231         288 DAYVCNYCYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       288 ~~~~C~~C~~~f~~~~~l~~H~~~h~  313 (420)
                      ..|.|..|++.|+....|+.|...|+
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35788999999999999999988885

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.013  Score=30.00  Aligned_cols=26  Identities=19%  Similarity=0.732  Sum_probs=19.3

Q ss_pred             cccccccccccCChhHHHHHHHHhhc
Q psy3231         339 CFTCPFCQRKYKIEKHLEKHIESCIQ  364 (420)
Q Consensus       339 ~~~C~~C~~~f~~~~~l~~H~~~~~~  364 (420)
                      .|.|..||+.|+.+..+.+|...|.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            46788888888888888888776543

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.019  Score=27.51  Aligned_cols=24  Identities=29%  Similarity=0.690  Sum_probs=17.6

Q ss_pred             cccccCccccCCHHHHHHHHHHhc
Q psy3231          95 FKCEMCPKSFDHKSNIRRHMAATH  118 (420)
Q Consensus        95 ~~C~~C~~~f~~~~~l~~H~~~~h  118 (420)
                      |.|+.|+.....++.|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            677777777777777777776554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.37  E-value=0.011  Score=29.35  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=23.2

Q ss_pred             cccccc--cccccCChhHHHHHHhhhcCC
Q psy3231         375 LQKCRY--CQRMFRNEDKLTAHELSHTME  401 (420)
Q Consensus       375 ~~~C~~--C~~~f~~~~~l~~H~~~H~~~  401 (420)
                      .|.|.+  |+.+|...-.|+.|+-.|+||
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            466764  999999999999999999986

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.26  E-value=0.013  Score=28.51  Aligned_cols=18  Identities=22%  Similarity=0.421  Sum_probs=7.1

Q ss_pred             ccccccCchHHHHHHhhc
Q psy3231         129 CARMYRYKWNLKAHLKMH  146 (420)
Q Consensus       129 C~~~f~~~~~l~~H~~~h  146 (420)
                      |.+.|.+...|.+|...|
T Consensus        10 c~kgf~tlhhltrhs~th   27 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTH   27 (30)
T ss_dssp             CCCEESSTTHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccc
Confidence            333343333344443333

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.014  Score=32.75  Aligned_cols=27  Identities=26%  Similarity=0.709  Sum_probs=22.2

Q ss_pred             ccccccccccccCChhHHHHHHhhhcC
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ..|.|..|++.|+....|+.|..-|.-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            357799999999999999999887753

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.02  Score=30.53  Aligned_cols=28  Identities=29%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             CCCcccc--ccccccccChHHHHHHHHHhc
Q psy3231         148 GPKIFTC--AQCDKAFSLKSNLSKHVRHHM  175 (420)
Q Consensus       148 ~~~~~~C--~~C~~~f~~~~~l~~H~~~h~  175 (420)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3678888  558888888888888877664

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.06  E-value=0.022  Score=27.04  Aligned_cols=20  Identities=35%  Similarity=0.838  Sum_probs=17.3

Q ss_pred             ccccccCChhHHHHHHhhhc
Q psy3231         380 YCQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       380 ~C~~~f~~~~~l~~H~~~H~  399 (420)
                      -|++.|..-.+|+.|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            48999999999999988875

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.06  Score=26.15  Aligned_cols=27  Identities=26%  Similarity=0.578  Sum_probs=20.2

Q ss_pred             CccCcchhhcCCCHHHHHHHHHhhcCC
Q psy3231         260 FYRCSECEKRFATEDIMRQHFRNYHNK  286 (420)
Q Consensus       260 ~~~C~~C~~~f~~~~~l~~H~~~~H~~  286 (420)
                      .|.|..||+...+...++.|+...|+.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccC
Confidence            367888888888888888887776653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.026  Score=28.86  Aligned_cols=26  Identities=15%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             cccccccccccCChhHHHHHHhhhcC
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      .|.|..|+++|+.+..+.+|...-+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            36799999999999999999987766

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.02  Score=35.83  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             ccccccccccccccCChhHHHHHHhh
Q psy3231         372 LKTLQKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       372 ~~~~~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      |...|.|..|++.|.+..+|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34568999999999999999999873

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.037  Score=26.64  Aligned_cols=19  Identities=32%  Similarity=0.760  Sum_probs=15.5

Q ss_pred             cccccCChhHHHHHHhhhc
Q psy3231         381 CQRMFRNEDKLTAHELSHT  399 (420)
Q Consensus       381 C~~~f~~~~~l~~H~~~H~  399 (420)
                      |++.|.+.++++.|+.+|.
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            7888888888888888774

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.042  Score=26.44  Aligned_cols=19  Identities=32%  Similarity=0.723  Sum_probs=11.8

Q ss_pred             chhccCChhHHHHHHhhCC
Q psy3231         295 CYDSFETKSTLVDHFFHHG  313 (420)
Q Consensus       295 C~~~f~~~~~l~~H~~~h~  313 (420)
                      |++.|.+.+.+..|+.+|+
T Consensus         9 C~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CCCEESSHHHHHHHHGGGS
T ss_pred             HHHHhhchHHHHHHhhccC
Confidence            6666666666666665553

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.063  Score=32.32  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=26.4

Q ss_pred             cccccccccccccccccCChhHHHHHHhhhcC
Q psy3231         369 TTVLKTLQKCRYCQRMFRNEDKLTAHELSHTM  400 (420)
Q Consensus       369 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  400 (420)
                      ...+...|.|..|+-.|.+..+|..|+..|..
T Consensus        12 ~~~~s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          12 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             cccCCceeeechhHHHHhhHHHHHHHHHhccH
Confidence            34455679999999999999999999998864

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.12  E-value=0.08  Score=26.72  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             cccccccccccCChhHHHHHHh
Q psy3231         375 LQKCRYCQRMFRNEDKLTAHEL  396 (420)
Q Consensus       375 ~~~C~~C~~~f~~~~~l~~H~~  396 (420)
                      .|.|.-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4789999999999999999975

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.12  E-value=0.15  Score=25.68  Aligned_cols=23  Identities=30%  Similarity=0.613  Sum_probs=17.4

Q ss_pred             CccccccCccccCCHHHHHHHHH
Q psy3231          93 RKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      ..|.|.-||..|++.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            34778888888888888887754

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.24  Score=23.96  Aligned_cols=26  Identities=27%  Similarity=0.665  Sum_probs=21.3

Q ss_pred             ccccccCccccCCHHHHHHHHHHhcC
Q psy3231          94 KFKCEMCPKSFDHKSNIRRHMAATHD  119 (420)
Q Consensus        94 ~~~C~~C~~~f~~~~~l~~H~~~~h~  119 (420)
                      .|.|..||+...+...++-|+...|+
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            37888899999888888888876665

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.11  Score=26.90  Aligned_cols=18  Identities=28%  Similarity=0.671  Sum_probs=9.5

Q ss_pred             ccccCchHHHHHHhhccC
Q psy3231         131 RMYRYKWNLKAHLKMHKG  148 (420)
Q Consensus       131 ~~f~~~~~l~~H~~~h~~  148 (420)
                      +.|.....|..||+.|+|
T Consensus        15 ~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHC
T ss_pred             CcchhHHHHHHHHhhcCC
Confidence            345555555555555554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.16  E-value=0.26  Score=25.21  Aligned_cols=29  Identities=31%  Similarity=0.827  Sum_probs=23.1

Q ss_pred             cCCccccccCccccCCHHHHHHHHHHhcC
Q psy3231          91 QERKFKCEMCPKSFDHKSNIRRHMAATHD  119 (420)
Q Consensus        91 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  119 (420)
                      ++..|.|..|.+.+...+++-+|....|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45568888999998888888888776664

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.11  Score=31.80  Aligned_cols=34  Identities=18%  Similarity=0.467  Sum_probs=14.4

Q ss_pred             ccccccchhccCChhHHHHHHhhCCCcccCCccCC
Q psy3231         289 AYVCNYCYDSFETKSTLVDHFFHHGNPYMCNHCFL  323 (420)
Q Consensus       289 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~C~~C~~  323 (420)
                      .|+|+.|+++|.....++. +-.-.+.|.|..|+.
T Consensus        14 ~y~Cp~C~~~ys~Lda~~L-~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          14 SFKCPVCSSTFTDLEANQL-FDPMTGTFRCTFCHT   47 (62)
T ss_dssp             EEECSSSCCEEEHHHHHHH-EETTTTEEBCSSSCC
T ss_pred             ceECCCCCCCcchhhHHHh-cCcCCCeEEecCCCC
Confidence            3555555555544333222 111124455555543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.69  E-value=0.17  Score=30.87  Aligned_cols=14  Identities=50%  Similarity=1.125  Sum_probs=6.3

Q ss_pred             cccCCCccccCCHH
Q psy3231         206 FKCPCCERIFTSET  219 (420)
Q Consensus       206 ~~C~~C~~~f~~~~  219 (420)
                      |.||.|+++|+...
T Consensus        15 y~Cp~C~~~ys~Ld   28 (62)
T d1vd4a_          15 FKCPVCSSTFTDLE   28 (62)
T ss_dssp             EECSSSCCEEEHHH
T ss_pred             eECCCCCCCcchhh
Confidence            44444444444433

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=0.36  Score=29.91  Aligned_cols=25  Identities=20%  Similarity=0.529  Sum_probs=20.8

Q ss_pred             cCCccccccCccccCCHHHHHHHHH
Q psy3231          91 QERKFKCEMCPKSFDHKSNIRRHMA  115 (420)
Q Consensus        91 ~~~~~~C~~C~~~f~~~~~l~~H~~  115 (420)
                      +..-|-|..|++.|.+...|..|++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCEEecccccCccCCHHHHHHHHc
Confidence            4455889999999999999999975

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.02  E-value=0.7  Score=25.53  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=16.8

Q ss_pred             cccccccccccccCChhHHHHHHhh
Q psy3231         373 KTLQKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       373 ~~~~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      +.|-.|++|+....+..+|++|+..
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3555677777777777777777653

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.02  E-value=0.14  Score=27.58  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=17.4

Q ss_pred             ccccccccccccCChhHHHHHHhhhcCCcccccccceee
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELSHTMEKTFYRNVATVS  412 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~c~~c~~~  412 (420)
                      ..|.|+.||+.+             .|+.|-.|++||..
T Consensus         4 ~~~~C~vCG~i~-------------~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDEAPEYCPVCGAP   29 (37)
T ss_dssp             CEEECTTTCCEE-------------ESCCCSBCTTTCCB
T ss_pred             cEEECCCCCCEe-------------cCCCCCcCCCCCCc
Confidence            356777777764             35667777777764

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.76  E-value=0.88  Score=25.14  Aligned_cols=29  Identities=28%  Similarity=0.572  Sum_probs=22.9

Q ss_pred             cCCccccccCccccCCHHHHHHHHHHhcC
Q psy3231          91 QERKFKCEMCPKSFDHKSNIRRHMAATHD  119 (420)
Q Consensus        91 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  119 (420)
                      .+.|-.|++|+.......+|++|+...|-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            45677899999988888889888875553

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.58  E-value=0.47  Score=24.46  Aligned_cols=24  Identities=21%  Similarity=0.542  Sum_probs=17.7

Q ss_pred             ccccccccccccCChhHHHHHHhh
Q psy3231         374 TLQKCRYCQRMFRNEDKLTAHELS  397 (420)
Q Consensus       374 ~~~~C~~C~~~f~~~~~l~~H~~~  397 (420)
                      ++|.|++|-+-..+...|.+|+..
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHHh
Confidence            467777777777777777777754

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.58  Score=22.48  Aligned_cols=21  Identities=19%  Similarity=0.515  Sum_probs=14.6

Q ss_pred             cchhhcCCCHHHHHHHHHhhc
Q psy3231         264 SECEKRFATEDIMRQHFRNYH  284 (420)
Q Consensus       264 ~~C~~~f~~~~~l~~H~~~~H  284 (420)
                      +.||+.|+++..|..|.+-.|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            357777777777777766544

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.28  E-value=1.1  Score=21.60  Aligned_cols=26  Identities=31%  Similarity=0.801  Sum_probs=18.9

Q ss_pred             ccccc--cCccccCCHHHHHHHHHHhcC
Q psy3231          94 KFKCE--MCPKSFDHKSNIRRHMAATHD  119 (420)
Q Consensus        94 ~~~C~--~C~~~f~~~~~l~~H~~~~h~  119 (420)
                      .|.|+  -|+..|.++.++..|...-|.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            36664  488888888888888765554