Psyllid ID: psy3485

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MKLTPKIPNLQQIQKTNPKLKKVNYPIIVARKMWTKLKKNHQNRNQKKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL
Secondary Structure (PSIPRED)
ccccccccccHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHccccHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHcHcccccccHHHHHHHHHHHHHHcccccHcHHHHHHHHHHcccccccccccccccccccccccccccccEcccccccccccccEEcccccccEEEHcccccHHHHHHHcccccccccccccccEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHcEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mkltpkipnlqqiqktnpklkkvnyPIIVARKMWTKLKKNHQNRNQKKMKSKtakywtggeedvdkveeeppepepeedevedgeildneddtksqgsvetiDDDIEMVFAAekkadpkrdMEKVRLRKQLMAIEEKIKaarhplfspddqffcihcngcvLYADLLDHCKLCLrrkrknpmrrnfmcfacpyycrygssmaihlrthtkekpfacemCNYRAASKIAIYAHMrtthimpdtseerryhcafcnftsptqwainrhtkythmntsgptiqpECIKILWSFLSYFIWISVDVNRL
Flexible Loop (DISEMBL)
mkltpkipnlqqiqktnpklkkvnyPIIVARKMWTKlkknhqnrnqkkmksktakywtggeedvdkveeeppepepeedevedgeildneddtksqgsvetidddiEMVFAaekkadpkrdmeKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLrrkrknpmrrnFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL
Low Complexity Region (SEG)
MKLTPKIPNLQQIQKTNPKLKKVNYPIIVARKMWTKLKKNHQNRNQKKMKSKTAKYWTggeedvdkveeeppepepeedevedgeILDNEDDTKSQGSVETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL
Disordered region (IsUnstruct)
*******************LKKVNYPIIVARKMWTKL*********************************************************************************************LMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDV***
Disordered Region (DISOPRED)
******I*NLQQ********************************************************************************************DIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLS************
Disordered Region (DISEMBL)
MKLTPKIPNLQQIQKTNPKLKKVNYPIIVARKMWTKL***********************************************EILD********GSVETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL
Disordered Region (DISPRO)
*KLTPKIPNLQQIQKTNPKLKKVNYPIIVARKMWTKLKKNH********************************************************SVETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLTPKIPNLQQIQKTNPKLKKVNYPIIVARKMWTKLKKNHQNRNQKKMKSKTAKYWTGGEEDVDKVEEEPPEPEPEEDEVEDGEILDNEDDTKSQGSVETIDDDIEMVFAAEKKADPKRDMEKVRLRKQLMAIEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
O54963	1069	RE1-silencing transcripti	yes	N/A	0.309	0.087	0.326	2e-10
Q8VIG1	1082	RE1-silencing transcripti	yes	N/A	0.309	0.086	0.326	2e-10
Q13127	1097	RE1-silencing transcripti	yes	N/A	0.309	0.085	0.316	3e-10
Q2EI21	1501	RE1-silencing transcripti	N/A	N/A	0.401	0.081	0.253	4e-09
Q2EI20	855	RE1-silencing transcripti	yes	N/A	0.273	0.097	0.326	7e-09
Q9PVG3	529	RE1-silencing transcripti	N/A	N/A	0.299	0.172	0.306	2e-08
Q08875	886	Protein suppressor of hai	N/A	N/A	0.25	0.085	0.357	6e-08
P08970	941	Protein suppressor of hai	no	N/A	0.25	0.080	0.357	6e-08
Q7ZVR6	810	Myoneurin OS=Danio rerio	no	N/A	0.342	0.128	0.293	9e-08
O08900	507	Zinc finger protein Aiolo	no	N/A	0.588	0.353	0.257	1e-07

>sp|O54963|REST_RAT RE1-silencing transcription factor OS=Rattus norvegicus GN=Rest PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 272 RKVYTCSKCNYFSTEKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 325

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct: 326 SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 365

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.
Rattus norvegicus (taxid: 10116)

>sp|Q8VIG1|REST_MOUSE RE1-silencing transcription factor OS=Mus musculus GN=Rest PE=2 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 268 RKVYTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 321

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct: 322 SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 361

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Mus musculus (taxid: 10090)

>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1 SV=3

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 273 RKVYTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 326

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  C++ +  Q  + RH +  H N   P   P C
Sbjct: 327 SGEKPFKCDQCSYVASNQHEVTRHARQVH-NGPKPLNCPHC 366

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Homo sapiens (taxid: 9606)

>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xenopus laevis GN=rest-a PE=2 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 36/158 (22%)

Query: 155 IHCNGCVLYADLLDH-------------------CKLCL----------RRKRKNPMRRN 185
           I C+GC    +  DH                   C +C           +  R +  R  
Sbjct: 214 IQCDGCGYNTNRFDHYLAHLKHHNKAGENERVYKCTICTYSTVSEYHWKKHLRNHYPRIL 273

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE 245
           + C  C Y+    ++   H+RTHT E+P+ C +C Y ++ K  +  HMRT       S E
Sbjct: 274 YTCSQCSYFSDRKNNYIQHIRTHTGERPYQCIICLYSSSQKTHLTRHMRT------HSGE 327

Query: 246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           + + C  C++ +  Q  + RH +  H N   P   P C
Sbjct: 328 KPFKCEQCSYVASNQHEVTRHARQVH-NGPKPLTCPHC 364

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio rerio GN=rest PE=2 SV=1

 Score = 61.6 bits (148), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE 245
           F C  C Y+    ++   H+RTH  E+PF C  C Y ++ K  +  HMRT       S E
Sbjct: 264 FTCSQCSYFSDRKNNYIQHIRTHAGERPFQCIYCEYSSSQKTHLTRHMRT------HSGE 317

Query: 246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGP 277
           R + C  C++ +  Q  + RH +  H   +GP
Sbjct: 318 RPFKCDNCSYLAANQHEVTRHARQVH---NGP 346

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells.

Danio rerio (taxid: 7955)

>sp|Q9PVG3|RESTB_XENLA RE1-silencing transcription factor B (Fragment) OS=Xenopus laevis GN=rest-b PE=2 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE 245
           + C  C Y+    ++   H+RTHT E+P+ C +C Y ++ K  +  HMRT       S E
Sbjct: 272 YTCSQCSYFSDRKNNYIQHIRTHTGERPYQCILCPYSSSQKTHLTRHMRT------HSGE 325

Query: 246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           + + C  C++ +  Q  + RH +  H N   P   P C
Sbjct: 326 KPFKCEQCSYVASNQHEVTRHARQVH-NGPKPLTCPHC 362

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|Q08875|SUHW_DROAN Protein suppressor of hairy wing OS=Drosophila ananassae GN=su(Hw) PE=2 SV=1

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 186 FMCFACPYYCRYG-SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
           +MC  C   C Y  S++ IH+RTHT EKPF C++C+ + ++ +A+  H R        + 
Sbjct: 414 YMCHVCKN-CFYSLSTLNIHIRTHTGEKPFDCDLCDKKLSALVALKKHRRY------HTG 466

Query: 245 ERRYHCAFCNFTSPTQWAINRHTK 268
           E+ Y C  CN     +  +NRH K
Sbjct: 467 EKPYSCTVCNQAFAVKEVLNRHMK 490

Su(Hw) controls the phenotypic effect of the gypsy transposable element. Binds specifically to a region of the gipsy element located 3' of the 5'LTR. It is probably a transcription factor. Could play a role in the establishment of chromatin domains.

Drosophila ananassae (taxid: 7217)

>sp|P08970|SUHW_DROME Protein suppressor of hairy wing OS=Drosophila melanogaster GN=su(Hw) PE=1 SV=2

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 186 FMCFACPYYCRYG-SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
           +MC  C   C Y  S++ IH+RTHT EKPF C++C+ + ++ +A+  H R        + 
Sbjct: 413 YMCHTCKN-CFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRY------HTG 465

Query: 245 ERRYHCAFCNFTSPTQWAINRHTK 268
           E+ Y C  CN     +  +NRH K
Sbjct: 466 EKPYSCTVCNQAFAVKEVLNRHMK 489

Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein binds specifically to a region of the gypsy element located 3' of the 5' long terminal repeat (LTR), and may also mediate interaction with other endogenous insulators at sites distinct from those recognized by Cp190.

Drosophila melanogaster (taxid: 7227)

>sp|Q7ZVR6|MYNN_DANRE Myoneurin OS=Danio rerio GN=mynn PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 160 CVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMC 219
           C +  +L        R  R +   + + C  C    R G+ +  H+R HT EKPF C  C
Sbjct: 474 CNICGNLFSEMSSLRRHMRIHKGLKPYQCTLCTRSFRQGNQLKTHMRIHTGEKPFTCTSC 533

Query: 220 NYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTK 268
           + R A K  +  H R  H      EE+ Y C FC     T   +  H +
Sbjct: 534 DSRFAQKCQLVYHCRMHH-----GEEKPYKCEFCGAAFATSSNLKIHIR 577

Danio rerio (taxid: 7955)

>sp|O08900|IKZF3_MOUSE Zinc finger protein Aiolos OS=Mus musculus GN=Ikzf3 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 74  PEPEEDE-VEDGEILDNEDDTKSQGSVETID---DDIEMVFAAEKKADPKRDMEKVRLRK 129
           P+P E E V+  E   NED+   + S++  D   D  E +   E   D +         +
Sbjct: 32  PKPHEIENVDSREAPANEDEDAGEDSMKVKDEYSDRDENIMKPEPMGDAEESEMPYSYAR 91

Query: 130 QLMAIEEKIKAARHPLFS----PDDQFFCIHCN-GCVLYADLLDHCKLCLRRKRKNPMRR 184
           +  +  E IK  RH  +        +  C  C   C+ +  L+ H       KR +   R
Sbjct: 92  EY-SDYESIKLERHVPYDNSRPTGGKMNCDVCGLSCISFNVLMVH-------KRSHTGER 143

Query: 185 NFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
            F C  C        ++  H++ HT EKPF C +CNY    + A+  H+RT  +      
Sbjct: 144 PFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCNYACQRRDALTGHLRTHSV------ 197

Query: 245 ERRYHCAFCNFTSPTQWAINRH 266
           E+ Y C FC  +   + ++  H
Sbjct: 198 EKPYKCEFCGRSYKQRSSLEEH 219

Transcription factor that plays an important role in the regulation of lymphocyte differentiation. Binds to GGGAA. Plays an essential role in regulation of B-cell differentiation, proliferation and maturation to an effector state. Involved in regulating BCL2 expression and controlling apoptosis in T-cells in an IL2-dependent manner.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
260801901	278	hypothetical protein BRAFLDRAFT_232936 [	0.335	0.366	0.355	1e-09
391346127	1161	PREDICTED: uncharacterized protein LOC10	0.355	0.093	0.271	2e-09
224049595	893	PREDICTED: RE1-silencing transcription f	0.309	0.105	0.326	8e-09
327279940	900	PREDICTED: RE1-silencing transcription f	0.309	0.104	0.306	9e-09
13929116	1069	RE1-silencing transcription factor [Ratt	0.309	0.087	0.326	9e-09
149035172	1048	RE1-silencing transcription factor [Ratt	0.309	0.089	0.326	1e-08
260823000	644	hypothetical protein BRAFLDRAFT_71741 [B	0.391	0.184	0.300	1e-08
260795192	408	hypothetical protein BRAFLDRAFT_68913 [B	0.246	0.183	0.419	1e-08
254675343	1082	RE1-silencing transcription factor [Mus	0.309	0.086	0.326	1e-08
148705985	1082	RE1-silencing transcription factor [Mus	0.309	0.086	0.326	1e-08

>gi|260801901|ref|XP_002595833.1| hypothetical protein BRAFLDRAFT_232936 [Branchiostoma floridae] gi|229281082|gb|EEN51845.1| hypothetical protein BRAFLDRAFT_232936 [Branchiostoma floridae]

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 16/118 (13%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE 245
           F C  CPY  RY S +  HL+TH  EKP  CE C YRAA K  +Y HMRT       + E
Sbjct: 140 FACERCPYKSRYKSGLTNHLKTHMGEKPHKCEQCGYRAAQKATLYRHMRT------HTGE 193

Query: 246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNR 303
           + Y C  C  +  T++ +  H K       GP +  +C        +Y      D+NR
Sbjct: 194 KPYPCTVCGRSCATEYLLETHMKS--HQPKGPLVCKDC--------NYRTMHKADMNR 241

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391346127|ref|XP_003747330.1| PREDICTED: uncharacterized protein LOC100905253 [Metaseiulus occidentalis]

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 154  CIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKP 213
            C+HCN       + +H     R  + +   + + C  C Y       +  H+RTHT EKP
Sbjct: 1045 CVHCN------YITEHRSYLQRHMKAHAEGKRYQCLECEYRTARSDHLNNHMRTHTSEKP 1098

Query: 214  FACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTH 271
            F+C  C++R A +  +Y H+   H      ++R + C +CN+    +  +N+H +  H
Sbjct: 1099 FSCNQCDFRCAQQATLYNHLNRRHF----KDKRTFMCEYCNYRCHIRADMNKHIRKVH 1152

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224049595|ref|XP_002195893.1| PREDICTED: RE1-silencing transcription factor-like [Taeniopygia guttata]

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ C MC Y ++ K  +  HMRT       
Sbjct: 274 RKVYTCSECSYFSDRKNNYIQHIRTHTGERPYQCAMCPYSSSQKTHLTRHMRT------H 327

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  C++ +  Q  + RH +  H N   P I P C
Sbjct: 328 SGEKPFKCDQCSYVASNQHEVTRHARQVH-NGPKPLICPHC 367

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327279940|ref|XP_003224713.1| PREDICTED: RE1-silencing transcription factor-like [Anolis carolinensis]

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ C MC Y ++ K  +  HMRT       
Sbjct: 273 RKVYTCLQCSYFSDRKNNYVQHIRTHTGERPYQCTMCPYSSSQKTHLTRHMRT------H 326

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  C++ +  Q  + RH +  H +   P + P C
Sbjct: 327 SGEKPFKCEQCSYVASNQHEVTRHARQVH-DGPKPLVCPHC 366

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|13929116|ref|NP_113976.1| RE1-silencing transcription factor [Rattus norvegicus] gi|81908377|sp|O54963.1|REST_RAT RecName: Full=RE1-silencing transcription factor; AltName: Full=Neural-restrictive silencer factor gi|2746326|gb|AAB94893.1| zinc finger transcription factor REST protein [Rattus norvegicus]

 Score = 67.0 bits (162), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 272 RKVYTCSKCNYFSTEKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 325

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct: 326 SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 365

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149035172|gb|EDL89876.1| RE1-silencing transcription factor [Rattus norvegicus]

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 251 RKVYTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 304

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct: 305 SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 344

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823000|ref|XP_002603971.1| hypothetical protein BRAFLDRAFT_71741 [Branchiostoma floridae] gi|229289296|gb|EEN59982.1| hypothetical protein BRAFLDRAFT_71741 [Branchiostoma floridae]

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 134 IEEKIKAARHPLFSPDDQFFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPY 193
            E  I  A+H    P   + C HC+         D+         K+   +++MC  C Y
Sbjct: 397 AELSIHLAKHSGKRP---YKCDHCDYAAAQKPHFDY-----HMAAKHSGEKSYMCGECGY 448

Query: 194 YCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC 253
              Y SS++ H+RTHT EKP+ C+ C+Y AA K  +  H+RT       + E+ Y C  C
Sbjct: 449 RTVYRSSLSRHMRTHTGEKPYKCDQCDYSAAEKSKLSDHVRT------HTGEKPYKCDQC 502

Query: 254 NFTSPTQWAINRH 266
           ++++  +  ++RH
Sbjct: 503 DYSATQKSNLDRH 515

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260795192|ref|XP_002592590.1| hypothetical protein BRAFLDRAFT_68913 [Branchiostoma floridae] gi|229277811|gb|EEN48601.1| hypothetical protein BRAFLDRAFT_68913 [Branchiostoma floridae]

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE 245
           +MC  C Y   Y SS+ +HLRTHT EKP+ C +C+Y AA K  +  HM TTH     S E
Sbjct: 299 YMCGECGYRTAYRSSLVVHLRTHTGEKPYKCALCDYSAAKKDNLDRHM-TTH-----SGE 352

Query: 246 RRYHCAFCNFTSPTQWAINRH 266
           + Y C  C + + +++ ++RH
Sbjct: 353 KPYMCDNCGYMAASRFHLSRH 373

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|254675343|ref|NP_035393.2| RE1-silencing transcription factor [Mus musculus] gi|341941963|sp|Q8VIG1.2|REST_MOUSE RecName: Full=RE1-silencing transcription factor; AltName: Full=Neural-restrictive silencer factor gi|117558671|gb|AAI27066.1| RE1-silencing transcription factor [Mus musculus]

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 268 RKVYTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 321

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct: 322 SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 361

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148705985|gb|EDL37932.1| RE1-silencing transcription factor [Mus musculus]

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
           R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT       
Sbjct: 268 RKVYTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT------H 321

Query: 243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
           S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct: 322 SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 361

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
ZFIN|ZDB-GENE-070912-380	646	si:dkey-154p10.3 "si:dkey-154p	0.417	0.196	0.317	1e-10
RGD|621069	1069	Rest "RE1-silencing transcript	0.421	0.119	0.310	3.6e-10
UNIPROTKB|F1M9A3	1068	Rest "RE1-silencing transcript	0.421	0.119	0.310	4.7e-10
MGI|MGI:104897	1082	Rest "RE1-silencing transcript	0.335	0.094	0.327	8.4e-10
UNIPROTKB|F1NUB6	186	ZNF513 "Uncharacterized protei	0.273	0.446	0.325	1.3e-09
UNIPROTKB|F1PT62	651	REST "Uncharacterized protein"	0.335	0.156	0.318	2.1e-09
UNIPROTKB|F1P4E4	889	REST "Uncharacterized protein"	0.381	0.130	0.320	2.6e-09
FB|FBgn0030008	465	CG2129 [Drosophila melanogaste	0.279	0.182	0.347	2.7e-09
UNIPROTKB|I3LD90	979	LOC100621006 "Uncharacterized	0.335	0.104	0.318	2.9e-09
UNIPROTKB|F1RTW1	1037	LOC100621006 "Uncharacterized	0.335	0.098	0.318	3.1e-09

ZFIN|ZDB-GENE-070912-380 si:dkey-154p10.3 "si:dkey-154p10.3" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 46/145 (31%), Positives = 67/145 (46%)

Query:   137 KIKAARHP-LFSPDDQFFCIHCNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYY 194
             K+   RH  +   D  F C HC+ C  L A L+ H ++    K   P    + C  C Y 
Sbjct:   514 KLTMRRHMGIHQGDKPFKCPHCHYCTRLKASLIQHLRIHTGEK---P----YKCLQCSYA 566

Query:   195 CRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
                 SS+  H RTHT+EKP+ C+ C Y +  K  +  H R  H    T E   + C  C 
Sbjct:   567 SIDRSSLRRHSRTHTQEKPYCCQYCPYSSIQKKCLDLHSRRHH----TGES--FPCHLCQ 620

Query:   255 FTSPTQWAINRHTKYTH---MNTSG 276
             +++P +  + RH +  H    N+SG
Sbjct:   621 YSTPDRQLLVRHMRKHHTGEQNSSG 645

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|621069 Rest "RE1-silencing transcription factor" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 45/145 (31%), Positives = 71/145 (48%)

Query:   142 RHPLFSPDDQ--FFCIHCNGCVLYADLLD-HCKLCLRRKRKNPMRRNFMCFACPYYCRYG 198
             +H L + D++  + CI C     Y  + + H +  LR     P R+ + C  C Y+    
Sbjct:   235 KHHLRAGDNERVYKCIICT----YTTVSEYHWRKHLRNHF--P-RKVYTCSKCNYFSTEK 287

Query:   199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP 258
             ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT H     S E+ + C  CN+ + 
Sbjct:   288 NNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT-H-----SGEKPFKCDQCNYVAS 341

Query:   259 TQWAINRHTKYTHMNTSGPTIQPEC 283
              Q  + RH +  H N   P   P C
Sbjct:   342 NQHEVTRHARQVH-NGPKPLNCPHC 365

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;NAS

GO:0000785 "chromatin" evidence=IDA

GO:0001046 "core promoter sequence-specific DNA binding" evidence=ISO

GO:0001047 "core promoter binding" evidence=ISO;ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISO;IDA

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003682 "chromatin binding" evidence=ISO;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO;IPI

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0010629 "negative regulation of gene expression" evidence=ISO;ISS

GO:0015271 "outward rectifier potassium channel activity" evidence=ISO;ISS

GO:0017053 "transcriptional repressor complex" evidence=ISO;IDA

GO:0032348 "negative regulation of aldosterone biosynthetic process" evidence=ISO;IMP

GO:0032403 "protein complex binding" evidence=IDA

GO:0035690 "cellular response to drug" evidence=ISO;ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043234 "protein complex" evidence=IDA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO;ISS

GO:0043922 "negative regulation by host of viral transcription" evidence=ISO;ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;ISS

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IMP;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=IMP

GO:0046676 "negative regulation of insulin secretion" evidence=ISO;ISS

GO:0050768 "negative regulation of neurogenesis" evidence=ISO;ISS

GO:0060379 "cardiac muscle cell myoblast differentiation" evidence=ISO;ISS

GO:0070933 "histone H4 deacetylation" evidence=ISO;ISS

GO:0071257 "cellular response to electrical stimulus" evidence=ISO;ISS

GO:0071385 "cellular response to glucocorticoid stimulus" evidence=ISO;ISS

GO:2000065 "negative regulation of cortisol biosynthetic process" evidence=ISO;IMP

GO:2000706 "negative regulation of dense core granule biogenesis" evidence=IMP

GO:2000740 "negative regulation of mesenchymal stem cell differentiation" evidence=ISO

GO:2000798 "negative regulation of amniotic stem cell differentiation" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1M9A3 Rest "RE1-silencing transcription factor" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 45/145 (31%), Positives = 71/145 (48%)

Query:   142 RHPLFSPDDQ--FFCIHCNGCVLYADLLD-HCKLCLRRKRKNPMRRNFMCFACPYYCRYG 198
             +H L + D++  + CI C     Y  + + H +  LR     P R+ + C  C Y+    
Sbjct:   235 KHHLRAGDNERVYKCIICT----YTTVSEYHWRKHLRNHF--P-RKVYTCSKCNYFSDRK 287

Query:   199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP 258
             ++   H+RTHT E+P+ CE+C Y ++ K  +  HMRT H     S E+ + C  CN+ + 
Sbjct:   288 NNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRT-H-----SGEKPFKCDQCNYVAS 341

Query:   259 TQWAINRHTKYTHMNTSGPTIQPEC 283
              Q  + RH +  H N   P   P C
Sbjct:   342 NQHEVTRHARQVH-NGPKPLNCPHC 365

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:104897 Rest "RE1-silencing transcription factor" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 36/110 (32%), Positives = 56/110 (50%)

Query:   175 RRKRKNPM-RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM 233
             R+  +N   R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HM
Sbjct:   259 RKHLRNHFPRKVYTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHM 318

Query:   234 RTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
             RT H     S E+ + C  CN+ +  Q  + RH +  H N   P   P C
Sbjct:   319 RT-H-----SGEKPFKCDQCNYVASNQHEVTRHARQVH-NGPKPLNCPHC 361

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0000785 "chromatin" evidence=ISO

GO:0001046 "core promoter sequence-specific DNA binding" evidence=ISO

GO:0001047 "core promoter binding" evidence=ISO

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISO;IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0015271 "outward rectifier potassium channel activity" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO;IDA

GO:0032348 "negative regulation of aldosterone biosynthetic process" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0035690 "cellular response to drug" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0043922 "negative regulation by host of viral transcription" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0046676 "negative regulation of insulin secretion" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050768 "negative regulation of neurogenesis" evidence=IGI

GO:0060379 "cardiac muscle cell myoblast differentiation" evidence=IDA

GO:0070933 "histone H4 deacetylation" evidence=ISO

GO:0071257 "cellular response to electrical stimulus" evidence=ISO

GO:0071385 "cellular response to glucocorticoid stimulus" evidence=ISO

GO:2000065 "negative regulation of cortisol biosynthetic process" evidence=ISO

GO:2000706 "negative regulation of dense core granule biogenesis" evidence=ISO

GO:2000740 "negative regulation of mesenchymal stem cell differentiation" evidence=ISO

GO:2000798 "negative regulation of amniotic stem cell differentiation" evidence=ISO

UNIPROTKB|F1NUB6 ZNF513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 29/89 (32%), Positives = 44/89 (49%)

Query:   178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
             RK    + F C  CP+   Y + +A H++TH+ EKPFAC +C Y +A    +  H R  H
Sbjct:    19 RKGTGDKGFACSLCPFVTHYPNHLARHMKTHSGEKPFACPLCPYASAHLDNLKRHQRV-H 77

Query:   238 IMPDTSEERRYHCAFCNFTSPTQWAINRH 266
                  + E+ Y C  C++       + RH
Sbjct:    78 -----TGEKPYKCQLCDYACGNLANLKRH 101

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PT62 REST "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query:   175 RRKRKNPM-RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM 233
             R+  +N   R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HM
Sbjct:   263 RKHLRNHFPRKVYTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHM 322

Query:   234 RTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
             RT H     S E+ + C  C++ +  Q  + RH +  H N   P   P C
Sbjct:   323 RT-H-----SGEKPFKCDQCSYVASNQHEVTRHARQVH-NGPKPLNCPHC 365

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1P4E4 REST "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 41/128 (32%), Positives = 61/128 (47%)

Query:   157 CNGCVLYADLLD-HCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFA 215
             C  C  Y  + + H K  LR     P R+ + C  C Y+    ++   H+RTHT E+P+ 
Sbjct:   247 CTICT-YTTVSEYHWKKHLRNHF--P-RKVYTCSQCSYFSDRKNNYIQHIRTHTGERPYQ 302

Query:   216 CEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTS 275
             C MC Y ++ K  +  HMRT H     S E+ + C  C++ +  Q  + RH +  H N  
Sbjct:   303 CAMCPYSSSQKTHLTRHMRT-H-----SGEKPFKCDQCSYVASNQHEVTRHARQVH-NGP 355

Query:   276 GPTIQPEC 283
              P   P C
Sbjct:   356 KPLTCPHC 363

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0001046 "core promoter sequence-specific DNA binding" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0032348 "negative regulation of aldosterone biosynthetic process" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043922 "negative regulation by host of viral transcription" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046676 "negative regulation of insulin secretion" evidence=IEA

GO:0050768 "negative regulation of neurogenesis" evidence=IEA

GO:0060379 "cardiac muscle cell myoblast differentiation" evidence=IEA

GO:0070933 "histone H4 deacetylation" evidence=IEA

GO:0071257 "cellular response to electrical stimulus" evidence=IEA

GO:0071385 "cellular response to glucocorticoid stimulus" evidence=IEA

GO:2000065 "negative regulation of cortisol biosynthetic process" evidence=IEA

GO:2000798 "negative regulation of amniotic stem cell differentiation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA

FB|FBgn0030008 CG2129 [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 32/92 (34%), Positives = 51/92 (55%)

Query:   183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT 242
             ++NF+C +C Y CR   ++ +H+R+HT E+PF C++C+ R  S   +  HM   H     
Sbjct:   349 QKNFVCESCGYSCRNKETLRVHIRSHTGERPFGCQVCDKRFPSHSGLREHM-AMH----- 402

Query:   243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNT 274
             S ER + C+ C  T   Q  +  H K+ H +T
Sbjct:   403 STERPHVCSVCGATFSRQKGLYHH-KFLHADT 433

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3LD90 LOC100621006 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query:   175 RRKRKNPM-RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM 233
             R+  +N   R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HM
Sbjct:   263 RKHLRNHFPRKVYTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHM 322

Query:   234 RTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
             RT H     S E+ + C  C++ +  Q  + RH +  H N   P   P C
Sbjct:   323 RT-H-----SGEKPFKCDQCSYVASNQHEVTRHARQVH-NGPKPLSCPHC 365

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RTW1 LOC100621006 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 165 (63.1 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query:   175 RRKRKNPM-RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM 233
             R+  +N   R+ + C  C Y+    ++   H+RTHT E+P+ CE+C Y ++ K  +  HM
Sbjct:   263 RKHLRNHFPRKVYTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHM 322

Query:   234 RTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC 283
             RT H     S E+ + C  C++ +  Q  + RH +  H N   P   P C
Sbjct:   323 RT-H-----SGEKPFKCDQCSYVASNQHEVTRHARQVH-NGPKPLSCPHC 365

GO:2000065 "negative regulation of cortisol biosynthetic process" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0071385 "cellular response to glucocorticoid stimulus" evidence=ISS

GO:0045665 "negative regulation of neuron differentiation" evidence=ISS

GO:0043922 "negative regulation by host of viral transcription" evidence=ISS

GO:2000706 "negative regulation of dense core granule biogenesis" evidence=ISS

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=ISS

GO:0032348 "negative regulation of aldosterone biosynthetic process" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0050768 "negative regulation of neurogenesis" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0060379 "cardiac muscle cell myoblast differentiation" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0001047 "core promoter binding" evidence=ISS

GO:2000798 "negative regulation of amniotic stem cell differentiation" evidence=ISS

GO:0071257 "cellular response to electrical stimulus" evidence=ISS

GO:0046676 "negative regulation of insulin secretion" evidence=ISS

GO:0070933 "histone H4 deacetylation" evidence=ISS

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0035690 "cellular response to drug" evidence=ISS

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	304
pfam12619	145	pfam12619, MCM2_N, Mini-chromosome maintenance pro	0.002
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.003

>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 61  EEDVDKVEEEPPEPEPEEDEVEDGEIL--DN-EDDTKSQGSVET-----IDDDI---EMV 109
           +E+ + +E++  + + E +E EDGE L  DN E D ++   ++      +DD+    E+ 
Sbjct: 5   DEEEE-LEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYEELS 63

Query: 110 FAAEKKADPKRDMEKVRLRKQLM 132
            AA + A+ + +     LR++ M
Sbjct: 64  AAARRAAEARLNRRDRLLRRRRM 86

This domain family is found in eukaryotes, and is typically between 138 and 153 amino acids in length. The family is found in association with pfam00493. Mini-chromosome maintenance (MCM) proteins are essential for DNA replication. These proteins use ATPase activity to perform this function. Length = 145

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 200 SMAIHLRTHTKEKPFACEMCNYRAAS 225
           ++  H+RTHT EKP+ C +C    +S
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
KOG2462|consensus	279		99.98
KOG2462|consensus	279		99.94
KOG1074|consensus	958		99.86
KOG1074|consensus	958		99.84
KOG3576|consensus	267		99.82
KOG3608|consensus	467		99.82
KOG3576|consensus	267		99.81
KOG3608|consensus	467		99.76
KOG3623|consensus	1007		99.71
KOG3623|consensus	1007		99.68
PLN03086	567	PRLI-interacting factor K; Provisional	99.56
PHA00733	128	hypothetical protein	99.43
PHA00733	128	hypothetical protein	99.31
PHA02768	55	hypothetical protein; Provisional	99.29
PLN03086	567	PRLI-interacting factor K; Provisional	99.21
PHA02768	55	hypothetical protein; Provisional	99.14
KOG3993|consensus	500		99.0
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.89
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.86
PHA00732	79	hypothetical protein	98.83
PHA00616	44	hypothetical protein	98.71
PHA00732	79	hypothetical protein	98.71
KOG3993|consensus	500		98.67
PHA00616	44	hypothetical protein	98.61
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.56
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.47
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.32
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.28
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.13
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.1
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.02
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.98
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.93
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.93
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.89
smart00355	26	ZnF_C2H2 zinc finger.	97.56
smart00355	26	ZnF_C2H2 zinc finger.	97.49
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.45
PRK04860	160	hypothetical protein; Provisional	97.16
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.11
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.03
PRK04860	160	hypothetical protein; Provisional	96.89
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.88
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.84
KOG2231|consensus	669		96.84
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.73
COG5048	467	FOG: Zn-finger [General function prediction only]	96.62
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.56
KOG2482|consensus	423		96.47
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.45
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.02
KOG1146|consensus	1406		96.01
KOG2231|consensus	669		95.68
PF01352	41	KRAB: KRAB box; InterPro: IPR001909 The Krueppel-a	95.66
KOG1146|consensus	1406		95.65
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.58
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.55
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.33
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.14
KOG2785|consensus	390		94.79
KOG2785|consensus	390		94.54
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.34
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.22
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.03
COG5048	467	FOG: Zn-finger [General function prediction only]	93.81
smart00868	73	zf-AD Zinc-finger associated domain (zf-AD). The z	93.27
KOG4173|consensus	253		93.16
COG4049	65	Uncharacterized protein containing archaeal-type C	92.22
PF07776	75	zf-AD: Zinc-finger associated domain (zf-AD) ; Int	92.1
KOG4173|consensus	253		91.83
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.39
KOG2186|consensus	276		91.14
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	91.08
KOG2893|consensus	341		90.95
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	90.64
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.37
KOG2186|consensus	276		89.32
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.29
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.94
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	88.23
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	88.01
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	87.96
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	87.8
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	87.52
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	87.2
KOG2893|consensus	341		86.72
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	86.67
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	86.65
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	84.99
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	84.77
COG4049	65	Uncharacterized protein containing archaeal-type C	84.5
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.18
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	84.16
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.73
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	83.3
COG4530	129	Uncharacterized protein conserved in bacteria [Fun	82.86
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	82.73
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	82.62
PRK06266	178	transcription initiation factor E subunit alpha; V	82.35
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	82.19
PRK06266	178	transcription initiation factor E subunit alpha; V	81.83
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	81.81
smart00531	147	TFIIE Transcription initiation factor IIE.	81.73
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	81.36
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	80.3

>KOG2462|consensus

Probab=99.98  E-value=3.8e-33  Score=227.70  Aligned_cols=131  Identities=20%  Similarity=0.338  Sum_probs=122.8

Q ss_pred             CccccCCCchHH-----HHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhcc
Q psy3485         150 DQFFCIHCNGCV-----LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAA  224 (304)
Q Consensus       150 ~~~~C~~C~~~f-----l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~  224 (304)
                      .+|+|..||+.+     |.+|.+.||.        -...+.|.|++|||.|.+.-+|..|+|+|+  -+++|.+|||.|.
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~--------~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFS  198 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRS--------LDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFS  198 (279)
T ss_pred             Cceeccccccccccccccchhhccccc--------ccccccccCCCCCceeeehHHHhhHhhccC--CCccccccccccc
Confidence            459999999999     9999998832        334678999999999999999999999998  7799999999999


Q ss_pred             CHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHh
Q psy3485         225 SKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       225 ~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      ..+.|+.|+| .|     ||||||.|..|+|+|+.+++|+.||+||.+.+  +|+|+.|+|+|+.++.|-.|..
T Consensus       199 RPWLLQGHiR-TH-----TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K--~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  199 RPWLLQGHIR-TH-----TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK--KHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             chHHhhcccc-cc-----cCCCCccCCcccchhcchHHHHHHHHhhcCCc--cccCcchhhHHHHHHHHHHhhh
Confidence            9999999999 99     99999999999999999999999999999997  9999999999999999999975

>KOG2462|consensus

Probab=99.94  E-value=3.6e-27  Score=192.80  Aligned_cols=112  Identities=21%  Similarity=0.402  Sum_probs=104.6

Q ss_pred             CCCCCcccCCCcccccChHHHHHHHHhhCC---CCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccC
Q psy3485         181 PMRRNFMCFACPYYCRYGSSMAIHLRTHTK---EKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTS  257 (304)
Q Consensus       181 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~---~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F  257 (304)
                      .....|+|+.||+.+.+.++|.+|..+|..   .+.+.|.+|||.|.+..+|..|+| +|     +  -+++|.+|||.|
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir-TH-----~--l~c~C~iCGKaF  197 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR-TH-----T--LPCECGICGKAF  197 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh-cc-----C--CCcccccccccc
Confidence            345679999999999999999999999963   577999999999999999999999 77     4  689999999999


Q ss_pred             CChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         258 PTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       258 ~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      .+.+-|.-|+|+|+|++  ||.|++|+|.|+.++||+.||++|++
T Consensus       198 SRPWLLQGHiRTHTGEK--PF~C~hC~kAFADRSNLRAHmQTHS~  240 (279)
T KOG2462|consen  198 SRPWLLQGHIRTHTGEK--PFSCPHCGKAFADRSNLRAHMQTHSD  240 (279)
T ss_pred             cchHHhhcccccccCCC--CccCCcccchhcchHHHHHHHHhhcC
Confidence            99999999999999997  99999999999999999999999986

>KOG1074|consensus

Probab=99.86  E-value=4.8e-23  Score=189.79  Aligned_cols=53  Identities=11%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      ...|..||+.|.+.++|..|||+|++++  ||.|.+|++.|.++.+|.+|+.+|.
T Consensus       879 ~h~C~vCgk~FsSSsALqiH~rTHtg~K--PF~C~fC~~aFttrgnLKvHMgtH~  931 (958)
T KOG1074|consen  879 AHVCNVCGKQFSSSAALEIHMRTHTGPK--PFFCHFCEEAFTTRGNLKVHMGTHM  931 (958)
T ss_pred             hhhhccchhcccchHHHHHhhhcCCCCC--Cccchhhhhhhhhhhhhhhhhcccc
Confidence            3899999999999999999999999997  9999999999999999999999985

>KOG1074|consensus

Probab=99.84  E-value=1.8e-22  Score=186.00  Aligned_cols=83  Identities=20%  Similarity=0.329  Sum_probs=76.8

Q ss_pred             cccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCC--CCcccC---CCccccc
Q psy3485         214 FACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTS--GPTIQP---ECIKILW  288 (304)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~--~~~~C~---~C~k~F~  288 (304)
                      -+|-+|.++..-++.|+.|.| .|     +|||||+|.+||+.|.++.+|+.||-+|.-.-.  -+|.|+   +|-+-|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyr-tH-----tGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft  679 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYR-TH-----TGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT  679 (958)
T ss_pred             cceeeeeecccchhhhhhhhh-cc-----cCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence            479999999999999999999 88     999999999999999999999999988877641  258999   9999999


Q ss_pred             chhHHHHHHhhccc
Q psy3485         289 SFLSYFIWISVDVN  302 (304)
Q Consensus       289 ~~~~l~~h~~~~~~  302 (304)
                      +.-.|-+|||+|.+
T Consensus       680 n~V~lpQhIriH~~  693 (958)
T KOG1074|consen  680 NAVTLPQHIRIHLG  693 (958)
T ss_pred             ccccccceEEeecC
Confidence            99999999999984

>KOG3576|consensus

Probab=99.82  E-value=2.4e-21  Score=150.97  Aligned_cols=118  Identities=23%  Similarity=0.406  Sum_probs=89.4

Q ss_pred             CCccccCCCchHH-HHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHH
Q psy3485         149 DDQFFCIHCNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKI  227 (304)
Q Consensus       149 ~~~~~C~~C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~  227 (304)
                      +..|.|.+|||.| |++=+.+|       ++-|...+.+-|..|||.|.....|.+|+|+|+|.+||+|..|+|.|+.+.
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh-------~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrc  187 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRH-------LKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRC  187 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHH-------hhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhc
Confidence            3458888888888 66666666       667777788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhhcCCC-----CCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         228 AIYAHMRTTHIMP-----DTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       228 ~L~~H~~~~H~~~-----~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .|..|.+.+|+++     ....++.|+|+.||.+-.....+-.|.+.||.-
T Consensus       188 sleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  188 SLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             cHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            8888887777543     112346677777777777777777777777765

>KOG3608|consensus

Probab=99.82  E-value=1.5e-20  Score=158.00  Aligned_cols=166  Identities=23%  Similarity=0.451  Sum_probs=134.5

Q ss_pred             hhhHhHHHHHHhhcCCCCCCCCc-cccCCCchHH-----HHHHHHHH---------hhhhccc------cccCCC--CCC
Q psy3485         129 KQLMAIEEKIKAARHPLFSPDDQ-FFCIHCNGCV-----LYADLLDH---------CKLCLRR------KRKNPM--RRN  185 (304)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~f-----l~~H~~~h---------C~~C~~~------~~~h~~--~~~  185 (304)
                      .+...++.+..+.+|.+.|+++. ..|+.||..|     |.-|+++-         |..|.|+      +..|..  ..-
T Consensus       184 ~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~  263 (467)
T KOG3608|consen  184 MCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC  263 (467)
T ss_pred             hhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc
Confidence            34556677788899988888775 7899999999     66676655         8888776      222211  245


Q ss_pred             cccCCCcccccChHHHHHHHHh-hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHH
Q psy3485         186 FMCFACPYYCRYGSSMAIHLRT-HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWA  262 (304)
Q Consensus       186 ~~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~  262 (304)
                      |.|+.|+.+....++|..|++. |...|||+|+.|++.|.+.+.|.+|.. +|     + +-.|.|..  |..+|++...
T Consensus       264 ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~-~H-----S-~~~y~C~h~~C~~s~r~~~q  336 (467)
T KOG3608|consen  264 YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ-VH-----S-KTVYQCEHPDCHYSVRTYTQ  336 (467)
T ss_pred             ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH-hc-----c-ccceecCCCCCcHHHHHHHH
Confidence            8999999999999999999885 899999999999999999999999999 88     5 56799988  9999999999


Q ss_pred             HHHHHHhhc-CCCCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         263 INRHTKYTH-MNTSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       263 L~~H~r~h~-~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      |++|++-|| |....+|.|..|.+.|.+-.+|-+|.+-.+
T Consensus       337 ~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH  376 (467)
T KOG3608|consen  337 MRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKH  376 (467)
T ss_pred             HHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhh
Confidence            999998888 555567999999999999999999986443

>KOG3576|consensus

Probab=99.81  E-value=1.3e-20  Score=146.85  Aligned_cols=117  Identities=19%  Similarity=0.360  Sum_probs=109.1

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCC
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP  258 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~  258 (304)
                      .-.+...|.|.+|+|.|.....|.+|++.|...++|-|..|||.|.....|++|+| +|     +|.+||+|..|+|+|.
T Consensus       111 sssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~r-th-----tgvrpykc~~c~kaft  184 (267)
T KOG3576|consen  111 SSSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTR-TH-----TGVRPYKCSLCEKAFT  184 (267)
T ss_pred             CCCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhc-cc-----cCccccchhhhhHHHH
Confidence            33456779999999999999999999999999999999999999999999999999 88     9999999999999999


Q ss_pred             ChHHHHHHHHhhcCCC---------CCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         259 TQWAINRHTKYTHMNT---------SGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       259 ~~~~L~~H~r~h~~~~---------~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      .+-+|..|.+..||..         .+.|.|+.||.+-...--++.|+.+|+
T Consensus       185 qrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  185 QRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             hhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            9999999999999986         246999999999999999999999875

>KOG3608|consensus

Probab=99.76  E-value=4.6e-19  Score=149.14  Aligned_cols=140  Identities=16%  Similarity=0.350  Sum_probs=102.0

Q ss_pred             cccCC--CchHH-----HHHHHHHH-------hhhhccc------------cccCCCCCCcccCCCcccccChHHHHHHH
Q psy3485         152 FFCIH--CNGCV-----LYADLLDH-------CKLCLRR------------KRKNPMRRNFMCFACPYYCRYGSSMAIHL  205 (304)
Q Consensus       152 ~~C~~--C~~~f-----l~~H~~~h-------C~~C~~~------------~~~h~~~~~~~C~~C~k~f~~~~~l~~H~  205 (304)
                      +.|..  |.+.|     |++|++.|       |+.|+..            ...-....+|+|.+|-|.|.+..+|..|+
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv  257 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHV  257 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHH
Confidence            67764  77777     88888877       7777654            22223345677777777777777777777


Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC--C
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE--C  283 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~--C  283 (304)
                      ++|-+-  |+|+.|+.+....+.|..||+..|     ...|||+|+.|+++|.+-+.|.+|..+|+..   -|.|+.  |
T Consensus       258 ~rHvn~--ykCplCdmtc~~~ssL~~H~r~rH-----s~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~---~y~C~h~~C  327 (467)
T KOG3608|consen  258 VRHVNC--YKCPLCDMTCSSASSLTTHIRYRH-----SKDKPFKCDECDTRCVRESDLAKHVQVHSKT---VYQCEHPDC  327 (467)
T ss_pred             HHhhhc--ccccccccCCCChHHHHHHHHhhh-----ccCCCccccchhhhhccHHHHHHHHHhcccc---ceecCCCCC
Confidence            777543  777777777777777777777777     7777788887888887778888887777743   577777  7


Q ss_pred             cccccchhHHHHHHhhcc
Q psy3485         284 IKILWSFLSYFIWISVDV  301 (304)
Q Consensus       284 ~k~F~~~~~l~~h~~~~~  301 (304)
                      ..+|.+..+|+.|++-|.
T Consensus       328 ~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  328 HYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             cHHHHHHHHHHHHHHHhc
Confidence            777777777777776544

>KOG3623|consensus

Probab=99.71  E-value=2.9e-18  Score=156.13  Aligned_cols=111  Identities=23%  Similarity=0.376  Sum_probs=96.8

Q ss_pred             CcccCCCcccccChHHHHHHHHh-h-CCCCccccccchhhccCHHHHHHHHHhhcCCCCC--------CCCCccccccCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRT-H-TKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT--------SEERRYHCAFCN  254 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~-H-~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~--------~~~~~~~C~~C~  254 (304)
                      ...|++|++.+.+...|+.|++. | .++..|.|..|..+|..+..|.+||. .|...++        .+-|+|+|+.||
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~-~hkpg~dqa~sltqsa~lRKFKCtECg  288 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQ-LHKPGGDQAISLTQSALLRKFKCTECG  288 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHH-hhcCCCcccccccchhhhccccccccc
Confidence            36899999999999999999764 5 46677999999999999999999999 7753322        235889999999


Q ss_pred             ccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHh
Q psy3485         255 FTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       255 k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      |.|+.+..|+.|.|+|.|++  ||.|+-|+|.|+...++-.||+
T Consensus       289 KAFKfKHHLKEHlRIHSGEK--PfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  289 KAFKFKHHLKEHLRIHSGEK--PFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             hhhhhHHHHHhhheeecCCC--CcCCcccccccccCCccccccc
Confidence            99999999999999999997  9999999999999999999986

>KOG3623|consensus

Probab=99.68  E-value=7.3e-18  Score=153.58  Aligned_cols=80  Identities=24%  Similarity=0.431  Sum_probs=65.3

Q ss_pred             CCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChH
Q psy3485         182 MRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQW  261 (304)
Q Consensus       182 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~  261 (304)
                      ...+|.|++|+|.|...++|.+|...|+|.|||+|.+|.|.|+.+..|..|+| .|     .|||||+|+.|+|+|.+..
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkR-LH-----SGEKPfQCdKClKRFSHSG  964 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKR-LH-----SGEKPFQCDKCLKRFSHSG  964 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhh-hc-----cCCCcchhhhhhhhccccc
Confidence            35678888888888888888888888888888888888888888888888888 77     8888888888888888888


Q ss_pred             HHHHHH
Q psy3485         262 AINRHT  267 (304)
Q Consensus       262 ~L~~H~  267 (304)
                      ++.+||
T Consensus       965 SYSQHM  970 (1007)
T KOG3623|consen  965 SYSQHM  970 (1007)
T ss_pred             chHhhh
Confidence            888887

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.56  E-value=1.1e-14  Score=133.73  Aligned_cols=133  Identities=17%  Similarity=0.285  Sum_probs=110.3

Q ss_pred             ccccCCCchHHHHHHHHHH----------hhh--hccccccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCcccccc
Q psy3485         151 QFFCIHCNGCVLYADLLDH----------CKL--CLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEM  218 (304)
Q Consensus       151 ~~~C~~C~~~fl~~H~~~h----------C~~--C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~  218 (304)
                      .-.|..|......+++..|          |+.  |+.......-+..+.|+.|++.|. ...|..|++.|+  +++.|+ 
T Consensus       407 ~V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-  482 (567)
T PLN03086        407 TVECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-  482 (567)
T ss_pred             eEECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-
Confidence            3689999998855555555          653  888877777788899999999996 678999999975  889999 


Q ss_pred             chhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCC----------ChHHHHHHHHhhcCCCCCCcccCCCccccc
Q psy3485         219 CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP----------TQWAINRHTKYTHMNTSGPTIQPECIKILW  288 (304)
Q Consensus       219 C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~----------~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~  288 (304)
                      ||+.| .+..|..|+. .|     ...+++.|..|++.|.          ..+.|..|..+. |..  ++.|..||+.|.
T Consensus       483 Cg~~~-~R~~L~~H~~-th-----Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~r--t~~C~~Cgk~Vr  552 (567)
T PLN03086        483 CGVVL-EKEQMVQHQA-ST-----CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSR--TAPCDSCGRSVM  552 (567)
T ss_pred             CCCCc-chhHHHhhhh-cc-----CCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCc--ceEccccCCeee
Confidence            99755 6799999998 88     9999999999999995          246899999986 664  999999999998


Q ss_pred             chhHHHHHHh
Q psy3485         289 SFLSYFIWIS  298 (304)
Q Consensus       289 ~~~~l~~h~~  298 (304)
                      .+. |..|+.
T Consensus       553 lrd-m~~H~~  561 (567)
T PLN03086        553 LKE-MDIHQI  561 (567)
T ss_pred             ehh-HHHHHH
Confidence            775 555543

>PHA00733 hypothetical protein

Probab=99.43  E-value=1.9e-13  Score=103.18  Aligned_cols=86  Identities=14%  Similarity=0.234  Sum_probs=59.7

Q ss_pred             CCCccccccchhhccCHHHHHHH--HHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         210 KEKPFACEMCNYRAASKIAIYAH--MRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       210 ~~~~~~C~~C~k~F~~~~~L~~H--~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      ..+++.|.+|.+.|.+...|..|  ++ .|.  ...+.+||.|+.||+.|.+.++|..|++.|  ..  +|.|+.|++.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~--~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~--~~~C~~CgK~F  109 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLY-KLL--TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EH--SKVCPVCGKEF  109 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHH-hhc--ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--Cc--CccCCCCCCcc
Confidence            35667777777777777666665  22 110  114577888888888888888888888776  22  68888888888


Q ss_pred             cchhHHHHHHhhccc
Q psy3485         288 WSFLSYFIWISVDVN  302 (304)
Q Consensus       288 ~~~~~l~~h~~~~~~  302 (304)
                      ...++|..|+.-.+|
T Consensus       110 ~~~~sL~~H~~~~h~  124 (128)
T PHA00733        110 RNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCHHHHHHHHHHhcC
Confidence            888888888775544

>PHA00733 hypothetical protein

Probab=99.31  E-value=2.2e-12  Score=97.44  Aligned_cols=85  Identities=14%  Similarity=0.230  Sum_probs=70.6

Q ss_pred             CCCCCcccCCCcccccChHHHHHH--HHh---hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCc
Q psy3485         181 PMRRNFMCFACPYYCRYGSSMAIH--LRT---HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNF  255 (304)
Q Consensus       181 ~~~~~~~C~~C~k~f~~~~~l~~H--~~~---H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  255 (304)
                      ...+++.|.+|.+.|.....|..|  ++.   +.+.+||.|+.||+.|.+.+.|..|++ .|     +  .+|.|..|++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r-~h-----~--~~~~C~~CgK  107 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR-YT-----E--HSKVCPVCGK  107 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh-cC-----C--cCccCCCCCC
Confidence            345778999999999888777776  332   445889999999999999999999999 55     3  4799999999


Q ss_pred             cCCChHHHHHHHHhhcCC
Q psy3485         256 TSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       256 ~F~~~~~L~~H~r~h~~~  273 (304)
                      +|.....|.+|++..|+.
T Consensus       108 ~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        108 EFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             ccCCHHHHHHHHHHhcCc
Confidence            999999999999988874

>PHA02768 hypothetical protein; Provisional

Probab=99.29  E-value=1.1e-12  Score=81.72  Aligned_cols=44  Identities=18%  Similarity=0.314  Sum_probs=38.8

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHH
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYF  294 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~  294 (304)
                      .|.|+.||+.|...++|..|||+|+  +  +|+|..|++.|+.++.|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k--~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--T--NLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--C--cccCCcccceecccceeE
Confidence            4899999999999999999999988  3  899999999999888775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.21  E-value=2.4e-11  Score=111.90  Aligned_cols=102  Identities=15%  Similarity=0.279  Sum_probs=79.6

Q ss_pred             cccCCCchHHHHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhcc-------
Q psy3485         152 FFCIHCNGCVLYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAA-------  224 (304)
Q Consensus       152 ~~C~~C~~~fl~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~-------  224 (304)
                      +.|+.|++.|....+..|       +..|.  .++.|+ ||+.| .+..|..|+.+|.+.+++.|..|++.|.       
T Consensus       454 ~~C~~Cgk~f~~s~LekH-------~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d  522 (567)
T PLN03086        454 VHCEKCGQAFQQGEMEKH-------MKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMD  522 (567)
T ss_pred             ccCCCCCCccchHHHHHH-------HHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccc
Confidence            567777777722222232       23332  789999 99765 6789999999999999999999999995       


Q ss_pred             ---CHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         225 ---SKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       225 ---~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                         ..+.|..|.. .      .|.+++.|..||+.|..+ .|..|+...|.
T Consensus       523 ~~d~~s~Lt~HE~-~------CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        523 VRDRLRGMSEHES-I------CGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             hhhhhhhHHHHHH-h------cCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence               2468999998 6      588999999999998776 78889877665

>PHA02768 hypothetical protein; Provisional

Probab=99.14  E-value=1.6e-11  Score=76.57  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             cccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHH
Q psy3485         186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKI  227 (304)
Q Consensus       186 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~  227 (304)
                      |.|+.||+.|+...+|..|+++|+  ++|+|..|++.|...+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s   45 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTG   45 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccc
Confidence            444444444444444444444444  3444444444444433

>KOG3993|consensus

Probab=99.00  E-value=1.2e-10  Score=101.09  Aligned_cols=135  Identities=13%  Similarity=0.160  Sum_probs=101.2

Q ss_pred             cccCCCchHH-----HHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHhhC--------CC-------
Q psy3485         152 FFCIHCNGCV-----LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHT--------KE-------  211 (304)
Q Consensus       152 ~~C~~C~~~f-----l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~--------~~-------  211 (304)
                      |.|..|...|     |.+|.=-        .-+|   .-|+|+.|+|.|+-.++|..|.|.|.        +.       
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~--------RIV~---vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~  336 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCP--------RIVH---VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAV  336 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCC--------eeEE---eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhh
Confidence            9999999888     6666421        2233   34999999999999999999999983        11       


Q ss_pred             ------------------CccccccchhhccCHHHHHHHHHhhcCCCCC-------------------------------
Q psy3485         212 ------------------KPFACEMCNYRAASKIAIYAHMRTTHIMPDT-------------------------------  242 (304)
Q Consensus       212 ------------------~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~-------------------------------  242 (304)
                                        ..|.|.+|+|.|+....|+.|+.++|..+..                               
T Consensus       337 ~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~  416 (500)
T KOG3993|consen  337 ETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDS  416 (500)
T ss_pred             hhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccc
Confidence                              2389999999999999999999866642100                               


Q ss_pred             -C--------CCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhh
Q psy3485         243 -S--------EERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISV  299 (304)
Q Consensus       243 -~--------~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~  299 (304)
                       .        ..-...|++||-.|.++..=-.|.|.-+-.+  -|.|.+|.-+|.+...|-+||..
T Consensus       417 ~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q--~f~~ky~~atfyss~~ltrhin~  480 (500)
T KOG3993|consen  417 HGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQ--GFTCKYCPATFYSSPGLTRHINK  480 (500)
T ss_pred             cccceeeeeccccccCCCCCCCCcccCCCCCccccccchhh--ccccccchHhhhcCcchHhHhhh
Confidence             0        0122456777777777766666665555554  69999999999999999999975

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.89  E-value=1e-09  Score=58.60  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=17.1

Q ss_pred             HHHHHHHhhcCCCCCCcccCCCcccccc
Q psy3485         262 AINRHTKYTHMNTSGPTIQPECIKILWS  289 (304)
Q Consensus       262 ~L~~H~r~h~~~~~~~~~C~~C~k~F~~  289 (304)
                      +|++|+++|++++  ||.|++|++.|++
T Consensus         1 ~l~~H~~~H~~~k--~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEK--PYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSS--SEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCC--CCCCCCCcCeeCc
Confidence            4666777766665  6777777776653

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.86  E-value=1.3e-09  Score=58.21  Aligned_cols=24  Identities=42%  Similarity=0.854  Sum_probs=11.2

Q ss_pred             HHHHHHhhCCCCccccccchhhcc
Q psy3485         201 MAIHLRTHTKEKPFACEMCNYRAA  224 (304)
Q Consensus       201 l~~H~~~H~~~~~~~C~~C~k~F~  224 (304)
                      |..|+++|+|++||+|++|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            444444444444444444444443

...

>PHA00732 hypothetical protein

Probab=98.83  E-value=2.6e-09  Score=73.20  Aligned_cols=50  Identities=24%  Similarity=0.499  Sum_probs=35.0

Q ss_pred             ccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||+|..||+.|.+...|..|++.+|     .   ++.|+.||++|.   .|..|.+++.+-
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H-----~---~~~C~~CgKsF~---~l~~H~~~~~~~   50 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH-----T---LTKCPVCNKSYR---RLNQHFYSQYDI   50 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc-----C---CCccCCCCCEeC---ChhhhhcccCCc
Confidence            4777888888888888888877445     3   356788888777   467777665553

>PHA00616 hypothetical protein

Probab=98.71  E-value=5.9e-09  Score=61.86  Aligned_cols=39  Identities=13%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      ||+|..||+.|..+++|+.|++.||+..  ++.|++=-..|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~--~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQN--KLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCC--ccceeEEEEEE
Confidence            5788888888888888888888888886  88777644333

>PHA00732 hypothetical protein

Probab=98.71  E-value=9e-09  Score=70.55  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=17.4

Q ss_pred             cccCCCcccccChHHHHHHHHh-hCCCCccccccchhhcc
Q psy3485         186 FMCFACPYYCRYGSSMAIHLRT-HTKEKPFACEMCNYRAA  224 (304)
Q Consensus       186 ~~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~~C~k~F~  224 (304)
                      |.|+.|++.|.+..+|..|++. |.+   +.|+.||+.|.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR   38 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC
Confidence            4455555555555555555442 332   34555555554

>KOG3993|consensus

Probab=98.67  E-value=3.7e-09  Score=91.93  Aligned_cols=88  Identities=17%  Similarity=0.319  Sum_probs=71.1

Q ss_pred             CCcccCCCcccccChHHHHHHHH--h-hCCCCccccccchhhccCHHHHHHHHHhhcCCCCC------------------
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLR--T-HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDT------------------  242 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~--~-H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~------------------  242 (304)
                      .-|.|..|--.|-....|.+|.-  + |-   -|+|..|+|.|+-..+|-.|.|||-.-+..                  
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~v---EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHV---EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEe---eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            45999999999999999999943  3 43   399999999999999999999954321100                  


Q ss_pred             ---------CCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         243 ---------SEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       243 ---------~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                               .....|.|.+|+|.|++...|+.|+.+|+...
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence                     12246999999999999999999999988754

>PHA00616 hypothetical protein

Probab=98.61  E-value=1.8e-08  Score=59.77  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCCCccccccc
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMC  219 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C  219 (304)
                      ||+|..||+.|..++.|..|++.|+|+++++|+.-
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            46677777777777777777777777777666643

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.56  E-value=1.2e-07  Score=60.40  Aligned_cols=51  Identities=25%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             cccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhc
Q psy3485         214 FACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |.|++|++ ..+...|..|....|.    .+.+.+.|++|...+.  .+|.+|++.+|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~----~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHR----SESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCc----CCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            44555555 2333445555444441    1123345555554333  24455544444

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.47  E-value=2.6e-07  Score=58.87  Aligned_cols=52  Identities=13%  Similarity=0.293  Sum_probs=35.6

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      .|.|++|++ ..+..+|..|....|....+.+.||+|...+.  .+|+.||..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            377888888 45566788886665555445678888887654  37788877665

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.32  E-value=2.8e-07  Score=47.67  Aligned_cols=22  Identities=23%  Similarity=0.650  Sum_probs=10.7

Q ss_pred             cccccCCccCCChHHHHHHHHh
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      |.|+.|++.|.++.+|++|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3444455555555555544444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.28  E-value=5e-07  Score=46.71  Aligned_cols=23  Identities=17%  Similarity=-0.034  Sum_probs=15.9

Q ss_pred             cccCCCcccccchhHHHHHHhhc
Q psy3485         278 TIQPECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~~~  300 (304)
                      |.|+.|++.|+++++|..||++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56777777777777777777654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.13  E-value=1.3e-06  Score=63.33  Aligned_cols=75  Identities=15%  Similarity=0.280  Sum_probs=21.4

Q ss_pred             ccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHH
Q psy3485         187 MCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRH  266 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H  266 (304)
                      +|..|+..|.+...|..|+...++-.   .. ....+.....+..+++ .      .-...+.|..|++.|.+...|..|
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~-~------~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLR-K------KVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Cccccccccccccccccccccccccc---cc-cccccccccccccccc-c------ccCCCCCCCccCCCCcCHHHHHHH
Confidence            47888888888888888886633321   11 2222334444444544 1      112368999999999999999999


Q ss_pred             HHhhcC
Q psy3485         267 TKYTHM  272 (304)
Q Consensus       267 ~r~h~~  272 (304)
                      |+.++.
T Consensus        70 m~~~~H   75 (100)
T PF12756_consen   70 MRSKHH   75 (100)
T ss_dssp             HHHTTT
T ss_pred             HcCccC
Confidence            987543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.10  E-value=2.1e-06  Score=44.68  Aligned_cols=24  Identities=17%  Similarity=0.580  Sum_probs=11.6

Q ss_pred             cccccCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |.|++|++.|.+...|+.|+++||
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            345555555555555555555543

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.02  E-value=1.3e-06  Score=73.56  Aligned_cols=59  Identities=22%  Similarity=0.521  Sum_probs=43.3

Q ss_pred             CCCcccccc--chhhccCHHHHHHHHHhhcCCC--------CC-----CCCCccccccCCccCCChHHHHHHHH
Q psy3485         210 KEKPFACEM--CNYRAASKIAIYAHMRTTHIMP--------DT-----SEERRYHCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       210 ~~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~--------~~-----~~~~~~~C~~C~k~F~~~~~L~~H~r  268 (304)
                      ++|||+|++  |.|.|++...|+.||+--|--+        .+     ...|||.|++|+|+|+.-..|+.|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            358899987  8899999999999988545211        11     12388888888888888888888853

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.98  E-value=3.3e-06  Score=45.44  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=12.0

Q ss_pred             cccccCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |.|..|++.|.+..+|..|++.|+
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            445555555555555555554443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.98  E-value=4.2e-06  Score=60.59  Aligned_cols=73  Identities=14%  Similarity=0.052  Sum_probs=20.2

Q ss_pred             ccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHH
Q psy3485         215 ACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYF  294 (304)
Q Consensus       215 ~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~  294 (304)
                      +|..|+..|.+...|..||...|.     -    .-. ....+.....|..+.+.-...   .+.|.+|++.|.+...|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~-----~----~~~-~~~~l~~~~~~~~~~~~~~~~---~~~C~~C~~~f~s~~~l~   67 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHG-----F----DIP-DQKYLVDPNRLLNYLRKKVKE---SFRCPYCNKTFRSREALQ   67 (100)
T ss_dssp             ----------------------------------------------------------S---SEEBSSSS-EESSHHHHH
T ss_pred             Cccccccccccccccccccccccc-----c----ccc-cccccccccccccccccccCC---CCCCCccCCCCcCHHHHH
Confidence            488899999999999999987882     1    111 222333555555565543333   589999999999999999


Q ss_pred             HHHhhc
Q psy3485         295 IWISVD  300 (304)
Q Consensus       295 ~h~~~~  300 (304)
                      .|++.+
T Consensus        68 ~Hm~~~   73 (100)
T PF12756_consen   68 EHMRSK   73 (100)
T ss_dssp             HHHHHT
T ss_pred             HHHcCc
Confidence            999854

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.93  E-value=5.6e-06  Score=42.99  Aligned_cols=24  Identities=17%  Similarity=-0.011  Sum_probs=20.5

Q ss_pred             cccCCCcccccchhHHHHHHhhcc
Q psy3485         278 TIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      |.|++|++.|.++..|..|+++|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999874

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.93  E-value=2.2e-06  Score=72.34  Aligned_cols=52  Identities=23%  Similarity=0.561  Sum_probs=45.9

Q ss_pred             CCCcccCC--CcccccChHHHHHHHHh-hC------------------CCCccccccchhhccCHHHHHHHHH
Q psy3485         183 RRNFMCFA--CPYYCRYGSSMAIHLRT-HT------------------KEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       183 ~~~~~C~~--C~k~f~~~~~l~~H~~~-H~------------------~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      ++||+|++  |+|.|.....|+.|+.- |.                  ..|||+|++|+|.|++...|+.|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999987  99999999999999765 51                  3489999999999999999999987

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.89  E-value=6.2e-06  Score=44.34  Aligned_cols=25  Identities=20%  Similarity=0.070  Sum_probs=23.6

Q ss_pred             CcccCCCcccccchhHHHHHHhhcc
Q psy3485         277 PTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      +|.|..|++.|.+..+|+.|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999999885

>smart00355 ZnF_C2H2 zinc finger

Probab=97.56  E-value=5.4e-05  Score=39.87  Aligned_cols=23  Identities=22%  Similarity=0.148  Sum_probs=12.5

Q ss_pred             cccCCCcccccchhHHHHHHhhc
Q psy3485         278 TIQPECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~~~  300 (304)
                      |.|+.|++.|.+..+|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            34555555555555555555544

>smart00355 ZnF_C2H2 zinc finger

Probab=97.49  E-value=0.0001  Score=38.71  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=15.2

Q ss_pred             cccccCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |.|..|+++|.+...|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            456666666666666666666543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.45  E-value=6.1e-05  Score=45.76  Aligned_cols=32  Identities=19%  Similarity=0.432  Sum_probs=20.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      ..+.|-.|++|+..+.+..+|++|+..+|+.+
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            55667778888888888888888887777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.16  E-value=0.00024  Score=55.77  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccch
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSF  290 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~  290 (304)
                      +|.|. |++   ....+++|.++|++++  +|.|..|++.|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~--~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEA--VYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCc--cEECCCCCceeEEe
Confidence            68898 887   7778899999999886  89999999888643

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.11  E-value=0.00027  Score=36.99  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=11.0

Q ss_pred             cccccCCccCCChHHHHHHHHh
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      |.|.+|++.|.+...|+.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3455555555555555555443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.03  E-value=0.00053  Score=35.51  Aligned_cols=23  Identities=30%  Similarity=0.854  Sum_probs=10.7

Q ss_pred             cccccCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |.|+.|+.+.. ...|.+|++.||
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            34555555544 555555555544

>PRK04860 hypothetical protein; Provisional

Probab=96.89  E-value=0.00055  Score=53.74  Aligned_cols=38  Identities=26%  Similarity=0.599  Sum_probs=24.6

Q ss_pred             ccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCCh
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQ  260 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~  260 (304)
                      +|.|. |++   ....+.+|++ .|     +++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~r-i~-----~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNR-VV-----RGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHH-Hh-----cCCccEECCCCCceeEEe
Confidence            46776 765   4555666777 55     677777777777766543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.88  E-value=0.00053  Score=35.87  Aligned_cols=23  Identities=17%  Similarity=-0.087  Sum_probs=21.1

Q ss_pred             cccCCCcccccchhHHHHHHhhc
Q psy3485         278 TIQPECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~~~  300 (304)
                      |.|.+|++.|++...|..|++-+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999854

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.84  E-value=0.0014  Score=39.94  Aligned_cols=30  Identities=20%  Similarity=0.480  Sum_probs=15.9

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      +..+.|-+|++|+..+....+|++|+.+.|
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            344566666666666666666666666565

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG2231|consensus

Probab=96.84  E-value=0.0032  Score=59.77  Aligned_cols=89  Identities=18%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             cccChHHHHHHHHh-hCCCCc----cccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCC------ccCCChHH
Q psy3485         194 YCRYGSSMAIHLRT-HTKEKP----FACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN------FTSPTQWA  262 (304)
Q Consensus       194 ~f~~~~~l~~H~~~-H~~~~~----~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~------k~F~~~~~  262 (304)
                      ...++..|+.|+.. -.+++.    -.|..|...|.....|.+|++..|          |.|..|.      .-|..-..
T Consensus       158 k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----------~~chfC~~~~~~neyy~~~~d  227 (669)
T KOG2231|consen  158 KLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----------EFCHFCDYKTGQNEYYNDYDD  227 (669)
T ss_pred             ehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----------eheeecCcccccchhcccchH
Confidence            34456677777664 223333    358888888888888888888666          6777774      34777778


Q ss_pred             HHHHHHhhcCCCCCCcccC--CCccc-ccchhHHHHHHh
Q psy3485         263 INRHTKYTHMNTSGPTIQP--ECIKI-LWSFLSYFIWIS  298 (304)
Q Consensus       263 L~~H~r~h~~~~~~~~~C~--~C~k~-F~~~~~l~~h~~  298 (304)
                      |..|.|.+|-      .|+  .|--. |..--.+.++++
T Consensus       228 Le~HfR~~Hf------lCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  228 LEEHFRKGHF------LCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             HHHHhhhcCc------cccccccccceeeehhHHHHHHH
Confidence            8888877664      366  45433 333335555555

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.73  E-value=0.00041  Score=37.11  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=13.0

Q ss_pred             cccccCCccCCChHHHHHHHHh
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      |.|..|++.|.+...|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566666666666666666543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.62  E-value=0.00026  Score=65.05  Aligned_cols=117  Identities=19%  Similarity=0.259  Sum_probs=71.6

Q ss_pred             CcccCCCcccccChHHHHHHHH--hhCCC--Cccccc--cchhhccCHHHHHHHHHhhcCCC------------------
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLR--THTKE--KPFACE--MCNYRAASKIAIYAHMRTTHIMP------------------  240 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~--~H~~~--~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~------------------  240 (304)
                      ++.|..|...|+....|..|.+  .|.++  +++.|.  .|++.|.....+..|.. .|...                  
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL-LHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcc-cccCCCccccccccCcccccccc
Confidence            4566666666666666666666  56666  666666  56666666666666666 33100                  


Q ss_pred             ------------CCCCCCcccccc--CCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         241 ------------DTSEERRYHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       241 ------------~~~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                                  .....+.+.|..  |-..+.....+..|...|-......+.+..|.+.|.....+..|++.|..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN  443 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence                        001223344432  66666666666667666666554457778888888888888888887765

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.56  E-value=0.0016  Score=33.62  Aligned_cols=24  Identities=8%  Similarity=-0.133  Sum_probs=19.7

Q ss_pred             cccCCCcccccchhHHHHHHhhccc
Q psy3485         278 TIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |+|+.|+.... ++.|..|+++|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999999998 9999999999764

>KOG2482|consensus

Probab=96.47  E-value=0.01  Score=51.11  Aligned_cols=23  Identities=22%  Similarity=0.519  Sum_probs=19.0

Q ss_pred             CcccCCCcccccChHHHHHHHHh
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRT  207 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~  207 (304)
                      .++|-.|-+.|..+..|+.|||.
T Consensus       195 r~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHh
Confidence            37888888888888888888875

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.45  E-value=0.0011  Score=35.38  Aligned_cols=23  Identities=13%  Similarity=-0.087  Sum_probs=20.7

Q ss_pred             CcccCCCcccccchhHHHHHHhh
Q psy3485         277 PTIQPECIKILWSFLSYFIWISV  299 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~  299 (304)
                      .|.|..|++.|.+...|..|++.
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCCcccCCCCcCCHHHHHHHHcc
Confidence            38899999999999999999874

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.02  E-value=0.026  Score=48.79  Aligned_cols=74  Identities=27%  Similarity=0.551  Sum_probs=51.7

Q ss_pred             ccCCCcccccChHHHHHHHHhhCCCCccccccchh-------hccCHHHHHHHHHhhcCCCCCCCCCcccccc--CC---
Q psy3485         187 MCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNY-------RAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CN---  254 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k-------~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~---  254 (304)
                      .|..|...|..-..|..|+|.-+    -+|-+|++       .|.+-..|..|-+..|          |.|..  |-   
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~H----E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----------y~ct~qtc~~~k  287 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRH----EACHICDMVGPIRYQYFKSYEDLEAHFRNAH----------YCCTFQTCRVGK  287 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhh----hhhhhhhccCccchhhhhCHHHHHHHhhcCc----------eEEEEEEEecCc
Confidence            68888888888888888877632    24555554       3777777888887555          66754  32   


Q ss_pred             -ccCCChHHHHHHHHhhcCCC
Q psy3485         255 -FTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       255 -k~F~~~~~L~~H~r~h~~~~  274 (304)
                       ..|+....|..|....|++.
T Consensus       288 ~~vf~~~~el~~h~~~~h~~~  308 (493)
T COG5236         288 CYVFPYHTELLEHLTRFHKVN  308 (493)
T ss_pred             EEEeccHHHHHHHHHHHhhcc
Confidence             24788888888887777765

>KOG1146|consensus

Probab=96.01  E-value=0.0029  Score=63.63  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=81.1

Q ss_pred             cCCCcccccChHHHHHHHHh-hCCCCccccccchhhccCHHHHHHHHHhhcCCC-------------------CCCCCCc
Q psy3485         188 CFACPYYCRYGSSMAIHLRT-HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMP-------------------DTSEERR  247 (304)
Q Consensus       188 C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~-------------------~~~~~~~  247 (304)
                      |.-|+..+.++..+..|+.. |+-.+.|+|+.|+..|+....|-.|||..|...                   -..+.++
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p  518 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP  518 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence            34455666666667777654 666688888888888888888888888756422                   1134588


Q ss_pred             cccccCCccCCChHHHHHHHHh--hcCC--------------------------------------C-CCCcccCCCccc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKY--THMN--------------------------------------T-SGPTIQPECIKI  286 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~--h~~~--------------------------------------~-~~~~~C~~C~k~  286 (304)
                      |.|..|..+|..+.+|..|+..  |-.+                                      + .+.+.|..|+..
T Consensus       519 ~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~ye  598 (1406)
T KOG1146|consen  519 YPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYE  598 (1406)
T ss_pred             ccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcch
Confidence            9999999999999999999853  1111                                      0 135899999998


Q ss_pred             ccchhHHHHHHh
Q psy3485         287 LWSFLSYFIWIS  298 (304)
Q Consensus       287 F~~~~~l~~h~~  298 (304)
                      -+-..+|.+|+.
T Consensus       599 tniarnlrihmt  610 (1406)
T KOG1146|consen  599 TNIARNLRIHMT  610 (1406)
T ss_pred             hhhhhccccccc
Confidence            888888888874

>KOG2231|consensus

Probab=95.68  E-value=0.028  Score=53.61  Aligned_cols=105  Identities=15%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             ccCCCcccccChHHHHHHHHh-hCCCCcccccc----------chhhccCHHHHHHHHHhhcCCCCCCCCCc-cccccCC
Q psy3485         187 MCFACPYYCRYGSSMAIHLRT-HTKEKPFACEM----------CNYRAASKIAIYAHMRTTHIMPDTSEERR-YHCAFCN  254 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~~----------C~k~F~~~~~L~~H~~~~H~~~~~~~~~~-~~C~~C~  254 (304)
                      .|..| -.|.+...|..|++. |..   +.|..          +.|.| +...|+.|+. .- .+.....+- -.|..|.
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~-~g-d~d~~s~rGhp~C~~C~  189 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLY-TRAELNLHLM-FG-DPDDESCRGHPLCKFCH  189 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehe-hHHHHHHHHh-cC-CCccccccCCccchhhh
Confidence            67888 888899999999965 643   33333          33444 4566778877 32 111122233 5899999


Q ss_pred             ccCCChHHHHHHHHhhcCCCCCCccc---CCCcccccchhHHHHHHhhcc
Q psy3485         255 FTSPTQWAINRHTKYTHMNTSGPTIQ---PECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       255 k~F~~~~~L~~H~r~h~~~~~~~~~C---~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      ..|-....|.+|++.+|..   -+.|   +.++.-|..-..|-+|.+-++
T Consensus       190 ~~fld~~el~rH~~~~h~~---chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  190 ERFLDDDELYRHLRFDHEF---CHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             hhhccHHHHHHhhccceeh---eeecCcccccchhcccchHHHHHhhhcC
Confidence            9999999999999998876   4555   334566888889999998654

>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []

Probab=95.66  E-value=0.0063  Score=35.98  Aligned_cols=38  Identities=11%  Similarity=0.176  Sum_probs=25.0

Q ss_pred             ccCCchHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccc
Q psy3485          21 KKVNYPIIVARKMWTKLKKNHQNRNQKKMKSKTAKYWT   58 (304)
Q Consensus        21 ~~~~~p~~iC~~C~~~l~~f~~~~~~~~~~~~~~~~~~   58 (304)
                      .+.|++..|.++.|..|+..+++++.++++++..+..+
T Consensus         2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~Eny~~l~s   39 (41)
T PF01352_consen    2 TFEDVAVYFSQEEWELLDPAQKNLYRDVMLENYRNLVS   39 (41)
T ss_dssp             -----TT---HHHHHTS-HHHHHHHHHHHHHTTTS---
T ss_pred             eEEEEEEEcChhhcccccceecccchhHHHHhhcccEe
Confidence            46789999999999999999999999999998887654

It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.

>KOG1146|consensus

Probab=95.65  E-value=0.0041  Score=62.58  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             ccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCC--------------------
Q psy3485         215 ACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNT--------------------  274 (304)
Q Consensus       215 ~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~--------------------  274 (304)
                      .|.-|+..|..+..+..|+...|     ...+.|+|+.|+-.|+....|-.|||..|-+-                    
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~-----S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~  512 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLH-----SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVY  512 (1406)
T ss_pred             cccchhhhhhhhcccccceeeee-----cccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccc
Confidence            35567778888888999999888     77899999999999999999999999833221                    


Q ss_pred             ---CCCcccCCCcccccchhHHHHHHhh
Q psy3485         275 ---SGPTIQPECIKILWSFLSYFIWISV  299 (304)
Q Consensus       275 ---~~~~~C~~C~k~F~~~~~l~~h~~~  299 (304)
                         ..+|.|..|..+|..+.+|.+|++-
T Consensus       513 ~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  513 RCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cCCCCcccceeeeeeeecchHHHHHHHH
Confidence               1479999999999999999999874

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.58  E-value=0.01  Score=30.93  Aligned_cols=20  Identities=10%  Similarity=-0.114  Sum_probs=11.4

Q ss_pred             cccCCCcccccchhHHHHHHh
Q psy3485         278 TIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      ..|+.||+.| ..++|-.|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3566666666 4555555554

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.55  E-value=0.0095  Score=33.80  Aligned_cols=22  Identities=9%  Similarity=-0.111  Sum_probs=15.2

Q ss_pred             CcccCCCcccccchhHHHHHHh
Q psy3485         277 PTIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      +|.|++|++.|.+..++..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5667777777777777766664

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.33  E-value=0.013  Score=33.27  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             ccccccCCccCCChHHHHHHHHh
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      +|.|.+|++.|.+..++..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999988888888754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.14  E-value=0.019  Score=29.92  Aligned_cols=19  Identities=21%  Similarity=0.487  Sum_probs=11.6

Q ss_pred             ccccCCccCCChHHHHHHHH
Q psy3485         249 HCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       249 ~C~~C~k~F~~~~~L~~H~r  268 (304)
                      .|+.||++| ....|.+|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            566666666 5556666654

>KOG2785|consensus

Probab=94.79  E-value=0.1  Score=45.95  Aligned_cols=116  Identities=15%  Similarity=0.055  Sum_probs=75.2

Q ss_pred             CCCCCcccCCCcccccChHHHHHHHHh--hCCC--C-------------ccc-------------cccchhhccCHHHHH
Q psy3485         181 PMRRNFMCFACPYYCRYGSSMAIHLRT--HTKE--K-------------PFA-------------CEMCNYRAASKIAIY  230 (304)
Q Consensus       181 ~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~--~-------------~~~-------------C~~C~k~F~~~~~L~  230 (304)
                      .+.-++.|.+|+++|....+...|+..  |...  +             ...             +..+-..+.......
T Consensus        64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~  143 (390)
T KOG2785|consen   64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSE  143 (390)
T ss_pred             hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccch
Confidence            345678999999999999999999764  4211  0             011             222222222211111


Q ss_pred             HHHHhhcCCC--------CCCCCCccccccCCccCCChHHHHHHHHhhcCCC---------------------CCCcccC
Q psy3485         231 AHMRTTHIMP--------DTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNT---------------------SGPTIQP  281 (304)
Q Consensus       231 ~H~~~~H~~~--------~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~---------------------~~~~~C~  281 (304)
                      .+.. - +.+        .....-|-.|-.|++.|.+--.-..||..+||-.                     ..-|.|=
T Consensus       144 e~~~-d-d~~Edi~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL  221 (390)
T KOG2785|consen  144 EEEE-D-DEEEDIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICL  221 (390)
T ss_pred             hhcc-C-cchhhhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEE
Confidence            1111 0 000        0012345789999999999999999999999864                     1248899


Q ss_pred             CCc---ccccchhHHHHHHh
Q psy3485         282 ECI---KILWSFLSYFIWIS  298 (304)
Q Consensus       282 ~C~---k~F~~~~~l~~h~~  298 (304)
                      .|+   +.|++--+...|+.
T Consensus       222 ~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  222 FCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             EeccccCcccccHHHHHHHh
Confidence            999   99999999999986

>KOG2785|consensus

Probab=94.54  E-value=0.08  Score=46.65  Aligned_cols=57  Identities=26%  Similarity=0.457  Sum_probs=46.4

Q ss_pred             ccccccchhhccCHHHHHHHHHhhcC--CCCC---------------CCCCccccccCC---ccCCChHHHHHHHHh
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTHI--MPDT---------------SEERRYHCAFCN---FTSPTQWAINRHTKY  269 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H~--~~~~---------------~~~~~~~C~~C~---k~F~~~~~L~~H~r~  269 (304)
                      |-.|-.|++.|.+.-.-..||-..|+  +|+.               .-..-|.|-.|+   +.|.+-.+.+.||+.
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            46799999999999999999998886  2211               012558999999   999999999999975

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.34  E-value=0.059  Score=39.25  Aligned_cols=84  Identities=13%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             CccccccchhhccCHHHHHHHHHhhcCCCCC-C-------CCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTHIMPDT-S-------EERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~-~-------~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      -|..|++||-+......|.+.-  +|+.|-+ -       ..+.-.|--|++.|........  ..-...  ..|.|+.|
T Consensus        14 LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~--~~y~C~~C   87 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDS--HRYVCAVC   87 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccc--cceeCCCC
Confidence            4566777776666666665542  4543311 0       1111248889999876532110  001122  36999999


Q ss_pred             cccccchhHHHHHHhhcc
Q psy3485         284 IKILWSFLSYFIWISVDV  301 (304)
Q Consensus       284 ~k~F~~~~~l~~h~~~~~  301 (304)
                      .+.|=---..++|-.+|+
T Consensus        88 ~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        88 KNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CCccccccchhhhhhccC
Confidence            999999999999988886

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.22  E-value=0.038  Score=40.28  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=24.8

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccch
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSF  290 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~  290 (304)
                      .+..|+.||+.|.--            ++ .|..|+.||..|.-.
T Consensus         8 tKR~Cp~CG~kFYDL------------nk-~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    8 TKRTCPSCGAKFYDL------------NK-DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CcccCCCCcchhccC------------CC-CCccCCCCCCccCcc
Confidence            456899999998754            33 489999999999654

The function of members of this family is unknown.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.03  E-value=0.049  Score=47.19  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=79.1

Q ss_pred             cccCC------CchHH-HHHHHHHHhhhhccccccCCCCCCcccCCCcc---cc------cChHHHHHHHHhhCCCCcc-
Q psy3485         152 FFCIH------CNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPY---YC------RYGSSMAIHLRTHTKEKPF-  214 (304)
Q Consensus       152 ~~C~~------C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k---~f------~~~~~l~~H~~~H~~~~~~-  214 (304)
                      |.|+.      |+-.| |..|+...         +|    .+-|.+|-+   .|      -++..|..|...-..+.-| 
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~---------H~----~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFK  218 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQ---------HG----FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFK  218 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhh---------cC----cEEhHhhhcCcccCccceeeeecccccccccCCccccCcC
Confidence            88864      55544 88888742         22    367777753   33      3455677776553333234 


Q ss_pred             ---ccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCc----cCCChHHHHHHHHhhcCCCCCCcccCC--C--
Q psy3485         215 ---ACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNF----TSPTQWAINRHTKYTHMNTSGPTIQPE--C--  283 (304)
Q Consensus       215 ---~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k----~F~~~~~L~~H~r~h~~~~~~~~~C~~--C--  283 (304)
                         .|..|...|..-..|.+|+|..|       |+-|.|+.-+.    -|+.-.+|.+|.+.-      -|.|++  |  
T Consensus       219 GHP~C~FC~~~FYdDDEL~~HcR~~H-------E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~------hy~ct~qtc~~  285 (493)
T COG5236         219 GHPLCIFCKIYFYDDDELRRHCRLRH-------EACHICDMVGPIRYQYFKSYEDLEAHFRNA------HYCCTFQTCRV  285 (493)
T ss_pred             CCchhhhccceecChHHHHHHHHhhh-------hhhhhhhccCccchhhhhCHHHHHHHhhcC------ceEEEEEEEec
Confidence               59999999999999999999777       44344433332    278888888886532      366765  4  


Q ss_pred             cc--cccchhHHHHHHhh
Q psy3485         284 IK--ILWSFLSYFIWISV  299 (304)
Q Consensus       284 ~k--~F~~~~~l~~h~~~  299 (304)
                      ||  .|...--|+.||.-
T Consensus       286 ~k~~vf~~~~el~~h~~~  303 (493)
T COG5236         286 GKCYVFPYHTELLEHLTR  303 (493)
T ss_pred             CcEEEeccHHHHHHHHHH
Confidence            33  37788888888853

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.81  E-value=0.012  Score=53.84  Aligned_cols=70  Identities=20%  Similarity=0.361  Sum_probs=54.4

Q ss_pred             CccccccchhhccCHHHHHHHHHh-hcCCCCCCCC--Cccccc--cCCccCCChHHHHHHHHhhcCCCCCCcccCC--Cc
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRT-THIMPDTSEE--RRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPTIQPE--CI  284 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~-~H~~~~~~~~--~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~--C~  284 (304)
                      .++.|..|...|.....|..|.+. .|     +++  +++.|+  .|++.|.+...+..|..+|++..  ++.|..  |.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  360 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNH-----SGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSIS--PAKEKLLNSS  360 (467)
T ss_pred             cCCCCccccCCcccccccccccccccc-----ccccCCceeeeccCCCccccccccccCCcccccCCC--ccccccccCc
Confidence            468888888888888888888884 56     777  888888  78888888888888888888885  666655  44


Q ss_pred             cccc
Q psy3485         285 KILW  288 (304)
Q Consensus       285 k~F~  288 (304)
                      +.+.
T Consensus       361 ~~~~  364 (467)
T COG5048         361 SKFS  364 (467)
T ss_pred             cccc
Confidence            4443

>smart00868 zf-AD Zinc-finger associated domain (zf-AD)

Probab=93.27  E-value=0.13  Score=34.01  Aligned_cols=22  Identities=14%  Similarity=0.096  Sum_probs=19.3

Q ss_pred             cCCchHHHHHHHHHHHhhhhhh
Q psy3485          22 KVNYPIIVARKMWTKLKKNHQN   43 (304)
Q Consensus        22 ~~~~p~~iC~~C~~~l~~f~~~   43 (304)
                      .+++|..||..||..|+.|+..
T Consensus        38 ~~~~p~~iC~~C~~~l~~~~~f   59 (73)
T smart00868       38 DDDLPKKICGDCLEKLESFYKF   59 (73)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHH
Confidence            4559999999999999999955

The zf-AD domain, also known as ZAD, forms an atypical treble-cleft-like zinc co-ordinating fold. The zf-AD domain is thought to be involved in mediating dimer formation, but does not bind to DNA.

>KOG4173|consensus

Probab=93.16  E-value=0.048  Score=43.72  Aligned_cols=51  Identities=20%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             ccCCCcccccChHHHHHHHHh-h---------CCCCcccccc--chhhccCHHHHHHHHHhhc
Q psy3485         187 MCFACPYYCRYGSSMAIHLRT-H---------TKEKPFACEM--CNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~H~~~-H---------~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H  237 (304)
                      .|..|.+.|.+.-.|-.|+-. |         .|..-|.|-+  |+..|.+...-+.||-+.|
T Consensus       108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence            566666666666666666443 3         2334455543  5555555555555555555

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=92.22  E-value=0.067  Score=33.23  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .||--+.|+.||+-|..+.++.+|...-|+=
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            5677777888888888888888777655543

>PF07776 zf-AD: Zinc-finger associated domain (zf-AD) ; InterPro: IPR012934 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.10  E-value=0.056  Score=36.19  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             ccCCchHHHHHHHHHHHhhhhhh
Q psy3485          21 KKVNYPIIVARKMWTKLKKNHQN   43 (304)
Q Consensus        21 ~~~~~p~~iC~~C~~~l~~f~~~   43 (304)
                      ..+++|..||..||..|+.|+..
T Consensus        39 ~~~~lp~~IC~~C~~~l~~~~~F   61 (75)
T PF07776_consen   39 PDDDLPQQICSSCWEKLQQFYRF   61 (75)
T ss_dssp             SS-SS-SEEEHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999955

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The zf-AD domain, also known as ZAD, forms an atypical treble-cleft-like zinc co-ordinating fold. The zf-AD domain is thought to be involved in mediating dimer formation, but does not bind to DNA []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 1PZW_A.

>KOG4173|consensus

Probab=91.83  E-value=0.15  Score=40.92  Aligned_cols=84  Identities=20%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             CCcccCC--CcccccChHHHHHHHHh-hCCCCccccccchhhccCHHHHHHHHHhhcCC----CCCCCCCcccccc--CC
Q psy3485         184 RNFMCFA--CPYYCRYGSSMAIHLRT-HTKEKPFACEMCNYRAASKIAIYAHMRTTHIM----PDTSEERRYHCAF--CN  254 (304)
Q Consensus       184 ~~~~C~~--C~k~f~~~~~l~~H~~~-H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~----~~~~~~~~~~C~~--C~  254 (304)
                      +.|.|.+  |...|.....+..|..+ |+    -.|..|.+.|.+...|-.|+..-|..    .-..|.--|.|-.  |+
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt  153 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCT  153 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhh
Confidence            4466665  66777777777777655 54    35888888888888888887765520    0002344578844  88


Q ss_pred             ccCCChHHHHHHHHhhc
Q psy3485         255 FTSPTQWAINRHTKYTH  271 (304)
Q Consensus       255 k~F~~~~~L~~H~r~h~  271 (304)
                      -.|.+...-++|+..-|
T Consensus       154 ~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  154 EKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             hhhhhhhhhhhHHHHhc
Confidence            88888888888875433

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.39  E-value=0.14  Score=32.39  Aligned_cols=9  Identities=33%  Similarity=0.740  Sum_probs=4.3

Q ss_pred             CcccCCCcc
Q psy3485         185 NFMCFACPY  193 (304)
Q Consensus       185 ~~~C~~C~k  193 (304)
                      .|.|+.||.
T Consensus        27 ~F~CPnCGe   35 (61)
T COG2888          27 KFPCPNCGE   35 (61)
T ss_pred             EeeCCCCCc
Confidence            345555553

>KOG2186|consensus

Probab=91.14  E-value=0.12  Score=42.84  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=12.5

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHT  209 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~  209 (304)
                      ..|.|.-|++.|.. ..+..|...-+
T Consensus        28 ~~fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen   28 AYFSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             CeeEEeeccccccc-chhhhhhhhcc
Confidence            34555555555555 44555544443

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=91.08  E-value=0.12  Score=28.91  Aligned_cols=24  Identities=25%  Similarity=0.823  Sum_probs=14.1

Q ss_pred             cccCCCcccccChHHHHHHHHhhCCCCccccccchh
Q psy3485         186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNY  221 (304)
Q Consensus       186 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k  221 (304)
                      |+|.+||..+....            .++.|++||.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            56666666554432            5566666663

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893|consensus

Probab=90.95  E-value=0.055  Score=44.39  Aligned_cols=49  Identities=18%  Similarity=0.415  Sum_probs=31.2

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhc
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      ++ .|=.|++.|....-|.+|++.-+    |+|.+|.|..-+--.|..|-..+|
T Consensus        10 kp-wcwycnrefddekiliqhqkakh----fkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   10 KP-WCWYCNREFDDEKILIQHQKAKH----FKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             Cc-eeeecccccchhhhhhhhhhhcc----ceeeeehhhhccCCCceeehhhhh
Confidence            44 35567777777777777766522    777777766555555655633355

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=90.64  E-value=0.2  Score=37.14  Aligned_cols=33  Identities=12%  Similarity=0.012  Sum_probs=24.1

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchh
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFL  291 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~  291 (304)
                      .+..|+.||+.|.--            ++ .|..|+.||..|.-..
T Consensus         8 tKr~Cp~cg~kFYDL------------nk-~p~vcP~cg~~~~~~~   40 (129)
T TIGR02300         8 TKRICPNTGSKFYDL------------NR-RPAVSPYTGEQFPPEE   40 (129)
T ss_pred             ccccCCCcCcccccc------------CC-CCccCCCcCCccCcch
Confidence            356899999888643            22 4889999999885553

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.37  E-value=0.63  Score=34.05  Aligned_cols=26  Identities=19%  Similarity=0.606  Sum_probs=23.8

Q ss_pred             cccc----ccCCccCCChHHHHHHHHhhcC
Q psy3485         247 RYHC----AFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       247 ~~~C----~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      -|.|    ..|+..+.+...+++|++.+||
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3899    9999999999999999999886

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2186|consensus

Probab=89.32  E-value=0.17  Score=42.04  Aligned_cols=47  Identities=17%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHH
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      .|.|..||-+..-.. +.+|+.+-+| ..|.|-.|++.|-. .....|.+
T Consensus         3 ~FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            366777776655443 5556666555 55677777777766 55566665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.29  E-value=0.073  Score=44.17  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             CccccccCCccCCChHHHHHHHHh----------hcCCCC---CCcccCCCcccccch
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKY----------THMNTS---GPTIQPECIKILWSF  290 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~----------h~~~~~---~~~~C~~C~k~F~~~  290 (304)
                      +.+.|++|++.|.++.-+....|.          ..+..+   ....||.||.+|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            456777777777776555544433          112210   125899999987654

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.94  E-value=0.99  Score=33.01  Aligned_cols=25  Identities=16%  Similarity=-0.041  Sum_probs=22.1

Q ss_pred             ccc----CCCcccccchhHHHHHHhhccc
Q psy3485         278 TIQ----PECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       278 ~~C----~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |.|    ..|+..+.+..+|..|.+.++|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            889    9999999999999999988764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=88.23  E-value=0.32  Score=27.97  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=14.2

Q ss_pred             ccCCCcccccChHHHHHHHHhhCCCCccccccchhhc
Q psy3485         187 MCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRA  223 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F  223 (304)
                      .|+.|+..|.-...     +.-.+.+..+|..|+..|
T Consensus         4 ~CP~C~~~f~v~~~-----~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDD-----KLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHH-----HcccCCcEEECCCCCcEe
Confidence            45555555544432     122233345555555444

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=88.01  E-value=0.3  Score=28.17  Aligned_cols=12  Identities=25%  Similarity=0.362  Sum_probs=5.8

Q ss_pred             ccCCCcccccCh
Q psy3485         187 MCFACPYYCRYG  198 (304)
Q Consensus       187 ~C~~C~k~f~~~  198 (304)
                      .|+.|+..|.-.
T Consensus         4 ~CP~C~~~~~v~   15 (38)
T TIGR02098         4 QCPNCKTSFRVV   15 (38)
T ss_pred             ECCCCCCEEEeC
Confidence            455555554444

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=87.96  E-value=0.35  Score=27.61  Aligned_cols=12  Identities=17%  Similarity=0.365  Sum_probs=5.5

Q ss_pred             ccCCCcccccCh
Q psy3485         187 MCFACPYYCRYG  198 (304)
Q Consensus       187 ~C~~C~k~f~~~  198 (304)
                      .|+.|+..|.-.
T Consensus         4 ~Cp~C~~~y~i~   15 (36)
T PF13717_consen    4 TCPNCQAKYEID   15 (36)
T ss_pred             ECCCCCCEEeCC
Confidence            344444444443

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=87.80  E-value=0.42  Score=26.92  Aligned_cols=26  Identities=19%  Similarity=0.511  Sum_probs=17.3

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      .|.|..||..+..             .. .|..|++||..
T Consensus         2 ~~~C~~CG~i~~g-------------~~-~p~~CP~Cg~~   27 (34)
T cd00729           2 VWVCPVCGYIHEG-------------EE-APEKCPICGAP   27 (34)
T ss_pred             eEECCCCCCEeEC-------------Cc-CCCcCcCCCCc
Confidence            4788888865332             22 37788888863

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=87.52  E-value=0.42  Score=25.09  Aligned_cols=11  Identities=18%  Similarity=0.169  Sum_probs=7.6

Q ss_pred             cccCCCccccc
Q psy3485         278 TIQPECIKILW  288 (304)
Q Consensus       278 ~~C~~C~k~F~  288 (304)
                      -.|+.||..|.
T Consensus        15 ~~Cp~CG~~F~   25 (26)
T PF10571_consen   15 KFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCCCCCc
Confidence            45777777774

Several members are annotated as putative helicases.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=87.20  E-value=0.34  Score=35.34  Aligned_cols=15  Identities=20%  Similarity=0.640  Sum_probs=7.6

Q ss_pred             CccccccchhhccCH
Q psy3485         212 KPFACEMCNYRAASK  226 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~  226 (304)
                      .|..|+.||..|.-.
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            445555555555443

The function of members of this family is unknown.

>KOG2893|consensus

Probab=86.72  E-value=0.16  Score=41.78  Aligned_cols=41  Identities=20%  Similarity=0.470  Sum_probs=24.8

Q ss_pred             cccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHH
Q psy3485         216 CEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRH  266 (304)
Q Consensus       216 C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H  266 (304)
                      |=+|.+.|....-|..|++..|          |+|.+|.|...+--.|.-|
T Consensus        13 cwycnrefddekiliqhqkakh----------fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAKH----------FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhhhcc----------ceeeeehhhhccCCCceee
Confidence            5556666666666666666555          6666666665555555555

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=86.67  E-value=0.49  Score=30.06  Aligned_cols=8  Identities=38%  Similarity=1.123  Sum_probs=4.0

Q ss_pred             ccccccCC
Q psy3485         247 RYHCAFCN  254 (304)
Q Consensus       247 ~~~C~~C~  254 (304)
                      +|.|+.||
T Consensus        48 ~Y~CP~CG   55 (59)
T PRK14890         48 PYTCPKCG   55 (59)
T ss_pred             ceECCCCC
Confidence            45555554

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=86.65  E-value=0.4  Score=28.78  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=18.8

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      .|.|..||..|...           ..  .+.+|+.||..
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~--~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK-----------SK--DVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC-----------CC--CceECCCCCce
Confidence            37888888887744           22  27888888864

present in RNA polymerase I, II and III

>smart00614 ZnF_BED BED zinc finger

Probab=84.99  E-value=0.67  Score=28.60  Aligned_cols=21  Identities=19%  Similarity=0.528  Sum_probs=13.5

Q ss_pred             cccccCCccCCCh-----HHHHHHHH
Q psy3485         248 YHCAFCNFTSPTQ-----WAINRHTK  268 (304)
Q Consensus       248 ~~C~~C~k~F~~~-----~~L~~H~r  268 (304)
                      -.|.+|++.+...     ++|.+|++
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            4677777766554     46666666

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.77  E-value=0.85  Score=27.27  Aligned_cols=12  Identities=17%  Similarity=0.526  Sum_probs=4.3

Q ss_pred             cccccCCccCCC
Q psy3485         248 YHCAFCNFTSPT  259 (304)
Q Consensus       248 ~~C~~C~k~F~~  259 (304)
                      ..|.+|++.+..
T Consensus        17 a~C~~C~~~~~~   28 (45)
T PF02892_consen   17 AKCKYCGKVIKY   28 (45)
T ss_dssp             EEETTTTEE---
T ss_pred             EEeCCCCeEEee
Confidence            344444444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=84.50  E-value=0.62  Score=29.03  Aligned_cols=28  Identities=18%  Similarity=0.360  Sum_probs=13.6

Q ss_pred             CCCccccccchhhccCHHHHHHHHHhhc
Q psy3485         210 KEKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       210 ~~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |+--++|+.||..|.......+|....|
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            4444455555555555555555544333

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.18  E-value=0.52  Score=37.08  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=29.2

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhh
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYR  222 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~  222 (304)
                      +....+...|.|+.|+.+|+...++.         ..|.|+.||..
T Consensus       101 l~~e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~  137 (158)
T TIGR00373       101 LEFETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM  137 (158)
T ss_pred             HhhccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence            34455667899999999999988875         25999999966

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.16  E-value=0.8  Score=27.39  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=12.0

Q ss_pred             CCccccccchhhccCH----HHHHHHHHhhc
Q psy3485         211 EKPFACEMCNYRAASK----IAIYAHMRTTH  237 (304)
Q Consensus       211 ~~~~~C~~C~k~F~~~----~~L~~H~~~~H  237 (304)
                      ....+|..|++.+...    +.|.+|++..|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            3445566666665543    55666664343

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.73  E-value=0.14  Score=42.51  Aligned_cols=13  Identities=15%  Similarity=0.777  Sum_probs=10.6

Q ss_pred             cccccCCccCCCh
Q psy3485         248 YHCAFCNFTSPTQ  260 (304)
Q Consensus       248 ~~C~~C~k~F~~~  260 (304)
                      .+|+.||.+|...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            5899999987754

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=83.30  E-value=1.4  Score=34.59  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=25.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      ++..-|.|+.|+..|+.--++.         .  .|.|+.||...
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~--~F~Cp~Cg~~L  138 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------L--NFTCPRCGAML  138 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------c--CCcCCCCCCEe
Confidence            4556688888888888888775         1  58888888764

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.86  E-value=1.4  Score=31.69  Aligned_cols=28  Identities=14%  Similarity=-0.132  Sum_probs=20.9

Q ss_pred             cccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccccc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILW  288 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~  288 (304)
                      -.|+.||+.|.--            ++ +|..|++||++|.
T Consensus        10 ridPetg~KFYDL------------Nr-dPiVsPytG~s~P   37 (129)
T COG4530          10 RIDPETGKKFYDL------------NR-DPIVSPYTGKSYP   37 (129)
T ss_pred             ccCccccchhhcc------------CC-CccccCcccccch
Confidence            4688888888643            22 5899999999983

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=82.73  E-value=0.72  Score=23.66  Aligned_cols=8  Identities=38%  Similarity=0.874  Sum_probs=3.7

Q ss_pred             CcccCCCc
Q psy3485         185 NFMCFACP  192 (304)
Q Consensus       185 ~~~C~~C~  192 (304)
                      .|.|+.||
T Consensus        16 ~f~CPnCG   23 (24)
T PF07754_consen   16 PFPCPNCG   23 (24)
T ss_pred             eEeCCCCC
Confidence            44444444

It is likely to bind zinc via its four well-conserved cysteine residues.

>TIGR00622 ssl1 transcription factor ssl1

Probab=82.62  E-value=1.1  Score=32.68  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=13.7

Q ss_pred             CCccccccCCccCCChHHHHHHH
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHT  267 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~  267 (304)
                      ...|.|+.|..-|=-.=+.-.|.
T Consensus        79 ~~~y~C~~C~~~FC~dCD~fiHe  101 (112)
T TIGR00622        79 SHRYVCAVCKNVFCVDCDVFVHE  101 (112)
T ss_pred             ccceeCCCCCCccccccchhhhh
Confidence            34677777777666555554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=82.35  E-value=0.66  Score=37.26  Aligned_cols=34  Identities=18%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      ....-|.|+.|++.|+.--++.         .  .|.|+.||-..
T Consensus       113 ~~~~~Y~Cp~C~~rytf~eA~~---------~--~F~Cp~Cg~~L  146 (178)
T PRK06266        113 ENNMFFFCPNCHIRFTFDEAME---------Y--GFRCPQCGEML  146 (178)
T ss_pred             cCCCEEECCCCCcEEeHHHHhh---------c--CCcCCCCCCCC
Confidence            3445678888888888777663         2  58888888764

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=82.19  E-value=0.66  Score=28.38  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=18.2

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      ..-|.|..||+.|..          -...  +...|++||..
T Consensus         4 ~~~Y~C~~Cg~~~~~----------~~~~--~~irCp~Cg~r   33 (49)
T COG1996           4 MMEYKCARCGREVEL----------DQET--RGIRCPYCGSR   33 (49)
T ss_pred             eEEEEhhhcCCeeeh----------hhcc--CceeCCCCCcE
Confidence            345888888888711          1111  36788888753

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=81.83  E-value=0.74  Score=36.99  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=27.5

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhc
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRA  223 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F  223 (304)
                      .-.....|.|+.|+..|+...++.         ..|.|+.||...
T Consensus       111 ~e~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L  146 (178)
T PRK06266        111 EEENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML  146 (178)
T ss_pred             hccCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence            334456799999999999888763         359999999653

>smart00614 ZnF_BED BED zinc finger

Probab=81.81  E-value=1.1  Score=27.59  Aligned_cols=25  Identities=12%  Similarity=-0.136  Sum_probs=20.8

Q ss_pred             CcccCCCcccccch-----hHHHHHHh-hcc
Q psy3485         277 PTIQPECIKILWSF-----LSYFIWIS-VDV  301 (304)
Q Consensus       277 ~~~C~~C~k~F~~~-----~~l~~h~~-~~~  301 (304)
                      .-.|.+|++.++..     ++|..|+. +|-
T Consensus        18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~   48 (50)
T smart00614       18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP   48 (50)
T ss_pred             EEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence            46899999999665     79999999 664

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.73  E-value=0.75  Score=35.73  Aligned_cols=15  Identities=20%  Similarity=0.414  Sum_probs=8.3

Q ss_pred             CccccccCCccCCCh
Q psy3485         246 RRYHCAFCNFTSPTQ  260 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~  260 (304)
                      .-|.|+.|+..|..-
T Consensus        98 ~~Y~Cp~C~~~y~~~  112 (147)
T smart00531       98 AYYKCPNCQSKYTFL  112 (147)
T ss_pred             cEEECcCCCCEeeHH
Confidence            345666666665543

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=81.36  E-value=0.81  Score=34.65  Aligned_cols=27  Identities=26%  Similarity=0.246  Sum_probs=17.3

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      ..-..|-+|||.|+.-   ++|.++|||-.
T Consensus        70 ~d~i~clecGk~~k~L---krHL~~~~glt   96 (132)
T PF05443_consen   70 PDYIICLECGKKFKTL---KRHLRTHHGLT   96 (132)
T ss_dssp             SS-EE-TBT--EESBH---HHHHHHTT-S-
T ss_pred             cCeeEEccCCcccchH---HHHHHHccCCC
Confidence            3447899999999874   99999998876

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=80.30  E-value=0.4  Score=28.05  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=17.2

Q ss_pred             cccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      |.|..||+.|.-....       ...  ..-.|+.||..
T Consensus         6 y~C~~Cg~~fe~~~~~-------~~~--~~~~CP~Cg~~   35 (41)
T smart00834        6 YRCEDCGHTFEVLQKI-------SDD--PLATCPECGGD   35 (41)
T ss_pred             EEcCCCCCEEEEEEec-------CCC--CCCCCCCCCCc
Confidence            6777777776544222       112  25667777763

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		8e-06
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		1e-05
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		2e-04

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 188 CFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
           C  C  + R    + IHLRTHT EKP+ CE C Y AA K ++  H+   H
Sbjct: 7   CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 188 CFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERR 247
           C  C         +  H+R HT  KP+ C+ C+Y AA   ++  H+R        S+ER 
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI------HSDERP 64
Query: 248 YHCAFCNFTSPTQWAINRHTKYTHMNTSGPT 278
           + C  C + S     +  H + +H   SGP+
Sbjct: 65  FKCQICPYASRNSSQLTVHLR-SHTGDSGPS 94

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMP 240
           F C  C         +  H+RTHT EKPFAC++C  + A       H    HI+P
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-06
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	4e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	6e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	8e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	8e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	4e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	5e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	7e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
             C  C Y C   +++ IH R H  ++PF C  C++       +  HM+ 
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINR 265
            + +   P  C  C+Y  +SK A+  H R  H       +R + C +C+F +     +++
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHER-IH-----CTDRPFKCNYCSFDTKQPSNLSK 55

Query: 266 HTKYTH 271
           H K   
Sbjct: 56  HMK-KF 60

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTK---EKPFACEMCNYRAASKIAIYAHMRTTH 237
             C  C + CR  +S+  H R H +      F CE C  R     ++ AH   +H
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN--FTSPTQWAINR 265
            +      CE+C +    K ++  H R  H   +T    R+ C FC   F  P   A   
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQR-KHA--ETVAALRFPCEFCGKRFEKPDSVA--- 55

Query: 266 HTKYTHMNTSGPTIQPEC 283
                H + S P +    
Sbjct: 56  ----AHRSKSHPALLLAP 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 47.9 bits (115), Expect = 8e-08
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 200 SMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERR-YHCAFCN--FT 256
           S     RTH+ EKP+ C +C+ R      +  H+         +E    +HC  C+    
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QK----HTENVAKFHCPHCDTVIA 56

Query: 257 SPTQWAINRHTKYTH 271
             +   +  H +  H
Sbjct: 57  RKSD--LGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 192 PYYCRY-------GSSMAIHLRTHTKE--KPFACEMCNYRAASKIAIYAHMRTTH 237
           PY C           +M +H+     E    F C  C+   A K  +  H+R  H
Sbjct: 15  PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAI 263
           + +    E  + C+ C ++         H+ + H  P+      Y C  CNF +    A+
Sbjct: 9   NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH--PNVVLNSSYVCVECNFLTKRYDAL 66

Query: 264 NRHTKYTH 271
           + H    H
Sbjct: 67  SEHNLKYH 74

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 45.1 bits (106), Expect = 6e-07
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
           ++C  C    +  S +  H+RTHT  +P+ C  CN+   +K  +  HM++
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
              C       R    +  H  +H+ EKP++C +C  R   K  +  H+R +H       
Sbjct: 7   GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SH----DGS 61

Query: 245 ERR-YHCAFC--NFTSPTQWAINRHTKYTH 271
             + Y C  C   F+ P    +N H K  H
Sbjct: 62  VGKPYICQSCGKGFSRPDH--LNGHIKQVH 89

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
            T   E  + C++C+           H  T+H        + Y C FC 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH----KRNVKVYPCPFCF 47

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 189 FACPY-YC--RYG--SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPD 241
             C Y  C   Y   S +  HLRTHT EKP+ C  E C++R A    +  H R  H    
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH---- 70

Query: 242 TSEERRYHCAFCN 254
            +  + + C  CN
Sbjct: 71  -TGAKPFQCGVCN 82

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
           PY C +            +  H R HT  KPF C +CN   +    +  HM+ 
Sbjct: 45  PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCN 254
           S +  HLRTHT EKP+ C  + C ++ A    +  H R  H     +  R + C  C+
Sbjct: 21  SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH-----TGHRPFQCQKCD 72

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
           PY+C +            +  H R HT  +PF C+ C+   +    +  HM+ 
Sbjct: 35  PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 199 SSMAIHLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRT-THIMPDTSEERRYHCAFCNF 255
           + + +H  +HT++ P+ C  E C+ R +    +  H +           ++   C+F   
Sbjct: 17  NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC----KKDDSCSFV-G 71

Query: 256 TSPTQWAINRHTKYTH 271
            + T +   +H    H
Sbjct: 72  KTWTLYL--KHVAECH 85

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 9/55 (16%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
           PY C +          S +  H + H        + C++   +      H+   H
Sbjct: 31  PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC 253
             +  H+RTHT EKPFAC++C  + A       H    H                
Sbjct: 17  DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-------ILPILEDKV 64

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE 244
           P+ C            +  H+R HT  KP+ C+ C+Y AA   ++  H+R  H     S+
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IH-----SD 61

Query: 245 ERRYHCAFC 253
           ER + C  C
Sbjct: 62  ERPFKCQIC 70

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 38.8 bits (90), Expect = 8e-05
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCN 220
                R+   C  C    R    +  H  +H+ EKP++    +
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 198 GSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTS 257
           GSS  ++    T    F C+ C+    + + +  HM  T    D +     +     ++ 
Sbjct: 4   GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN-HETDNNNPKRWSK 62

Query: 258 PTQWAINRHTK 268
           P + ++     
Sbjct: 63  PRKRSLLEMEG 73

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
           H+R HT +KPF C +C    +    +  H+RT
Sbjct: 40  HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 192 PYYCR-------YGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
           P+ CR           +  H+RTHT EKPFAC++C  + A       H + 
Sbjct: 34  PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 17/72 (23%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIA-IYAHMRTTHIMPD 241
           PY C             S+  H+R HT +KPF C +C  R  S+   +  H+R TH    
Sbjct: 4   PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICM-RNFSRSDHLTTHIR-TH---- 57

Query: 242 TSEERRYHCAFC 253
            + E+ + C  C
Sbjct: 58  -TGEKPFACDIC 68

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
              +   EKP+ CE+C  R      + +H+R 
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 18/74 (24%)

Query: 192 PYYCRYG---------SSMAIHLR-THTKEKPFACE--MCNYRAASKIAIYAHMRTTHIM 239
              C +            +  H +  H  +K F+C    C      K  +  HM+  H  
Sbjct: 7   GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LH-- 63

Query: 240 PDTSEERRYHCAFC 253
              S+ R Y C F 
Sbjct: 64  ---SDTRDYICEFS 74

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIM 239
             R  T  KPF C  C+   +    +  H +  H++
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHML 36

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMP 240
           P+ C +           ++ IH RTHT EKPF CE   C+ R A+      HM   H   
Sbjct: 90  PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VH--- 145

Query: 241 DTSEERRYHC 250
             + ++    
Sbjct: 146 --TSDKSGPS 153

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 5/35 (14%), Positives = 8/35 (22%), Gaps = 7/35 (20%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
            + C          ++MA H            E  
Sbjct: 47  AFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
           PY C +            +  H R HT  KPF C+ C  + +    +  H RT
Sbjct: 36  PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 17/73 (23%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMP 240
           P+ C Y          S + +H R HT EKP+ C+   C  R +    +  H R  H   
Sbjct: 6   PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RH--- 61

Query: 241 DTSEERRYHCAFC 253
             +  + + C  C
Sbjct: 62  --TGVKPFQCKTC 72

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%)

Query: 192 PYYCR-------YGSSMAIHLRTHTKEKPFAC 216
           P+ C+       +  S+  HLR+H +  P   
Sbjct: 12  PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 16/70 (22%)

Query: 192 PYYCRYG---------SSMAIHLRTHTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMP 240
           P+ C +           ++  HLR+HT EKP+ CE   C+   ++      H   TH   
Sbjct: 67  PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH--- 123

Query: 241 DTSEERRYHC 250
             S E+ Y C
Sbjct: 124 --SNEKPYVC 131

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
           PY C       RY  ++A H   HT EKP+ C +C
Sbjct: 17  PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 204 HLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA 251
              + T EKPFAC    C +R +    +  H R +H     S  +    +
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SH-----SGVKPSGPS 46

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 7/35 (20%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
           PY C          S M  H   HT EKP  C++C
Sbjct: 29  PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
              +   EKP+ CE C  R      + AH+  
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 7/35 (20%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
            + C            +  H R+HT EKP+ C +C
Sbjct: 2   SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.0 bits (87), Expect = 9e-04
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)

Query: 192 PYYC-------RYGSSMAIHLRTHTKEKPFACEMC 219
           PY C       R    +  H   H+KEKPF C+ C
Sbjct: 45  PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.96
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.96
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.96
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.88
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.88
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.87
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.87
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.87
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.87
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.87
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.86
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.86
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.86
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.85
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.85
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.84
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.84
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.82
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.82
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.82
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.81
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.8
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.8
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.8
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.79
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.78
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.78
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.77
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.77
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.74
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.74
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.73
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.71
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.69
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.68
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.68
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.68
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.68
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.68
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.67
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.67
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.67
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.67
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.67
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.66
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.66
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.65
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.65
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.64
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.64
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.63
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.63
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.62
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.6
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.6
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.6
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.55
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.54
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.48
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.48
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.46
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.42
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.4
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.39
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.37
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.37
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.37
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.37
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.36
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.36
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.36
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.36
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.36
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.35
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.35
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.35
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.35
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.35
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.35
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.34
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.34
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.34
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.33
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.33
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.33
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.31
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.3
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.3
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.26
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.26
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.25
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.25
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.24
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.23
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.22
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.21
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.21
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.2
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.19
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.19
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.19
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.19
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.18
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.18
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.18
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.17
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.17
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.16
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.14
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.14
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.14
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.14
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.14
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.13
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.13
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.11
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.1
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.07
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.98
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.97
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.96
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.95
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.95
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.92
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.9
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.9
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.86
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.85
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.81
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.81
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.8
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.78
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.76
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.74
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.74
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.69
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.68
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.67
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.63
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.62
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.62
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.61
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.6
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.6
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.56
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.56
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.56
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.55
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.54
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.54
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.54
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.53
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.53
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.52
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.52
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.92
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.91
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.5
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.49
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.48
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.47
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.47
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.46
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.45
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.83
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.45
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.77
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.4
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.4
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.4
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.39
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.38
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.38
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.37
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.72
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.31
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.3
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.62
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.27
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.87
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.82
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.54
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.51
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.29
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.83
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.78
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.74
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.47
1pzw_A	80	Transcription factor grauzone; dimerization, trans	95.95
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.84
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.54
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.11
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	91.28
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.26
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.21
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	90.83
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	89.8
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.26
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	88.25
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	86.07
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	85.66
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	85.19
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	84.47
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.56
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	83.24
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.86
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	82.12
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	81.92

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=3.8e-35  Score=239.36  Aligned_cols=160  Identities=21%  Similarity=0.320  Sum_probs=132.5

Q ss_pred             HHHhhhhHhHHHHHHhhcCCCCCCC-CccccCCCchHH-----HHHHHHHHhhhhccccccCCCCCCcccCCCcccccCh
Q psy3485         125 VRLRKQLMAIEEKIKAARHPLFSPD-DQFFCIHCNGCV-----LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYG  198 (304)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~C~~C~~~f-----l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~  198 (304)
                      ..+..+...+.....+..|+..+.+ ++|.|+.|++.|     |..|++           .|.++++|.|++|++.|.+.
T Consensus        22 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-----------~h~~~~~~~C~~C~~~f~~~   90 (190)
T 2i13_A           22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-----------THTGEKPYKCPECGKSFSQR   90 (190)
T ss_dssp             ---------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHH-----------HHHCCCCEECTTTCCEESCH
T ss_pred             CcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHH-----------hcCCCCCccCcccCCccCCH
Confidence            4455566666666667777766544 458888888888     555554           45788999999999999999


Q ss_pred             HHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCc
Q psy3485         199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPT  278 (304)
Q Consensus       199 ~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~  278 (304)
                      .+|..|+++|.++++|.|.+|++.|.+...|..|++ .|     .++++|.|+.||+.|.+...|..|+++|++++  +|
T Consensus        91 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~--~~  162 (190)
T 2i13_A           91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-TH-----TGEKPYKCPECGKSFSREDNLHTHQRTHTGEK--PY  162 (190)
T ss_dssp             HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHH-HH-----HCCCCEECTTTCCEESCHHHHHHHHHHHHCCC--CE
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-Hh-----CCCCCeECCCCCcccCCHHHHHHHHHhcCCCC--Ce
Confidence            999999999999999999999999999999999999 77     89999999999999999999999999999996  99


Q ss_pred             ccCCCcccccchhHHHHHHhhcccC
Q psy3485         279 IQPECIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       279 ~C~~C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      .|++||+.|.++++|..|+++|++.
T Consensus       163 ~C~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          163 KCPECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTC---
T ss_pred             ECCCCCCccCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999863

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.97  E-value=2.4e-30  Score=203.85  Aligned_cols=136  Identities=19%  Similarity=0.301  Sum_probs=124.8

Q ss_pred             ccccCCCchHH-----HHHHHHHHhhhhccccccCCCCCCcccCCC-----cccccChHHHHHHHHhhCCCCcccccc--
Q psy3485         151 QFFCIHCNGCV-----LYADLLDHCKLCLRRKRKNPMRRNFMCFAC-----PYYCRYGSSMAIHLRTHTKEKPFACEM--  218 (304)
Q Consensus       151 ~~~C~~C~~~f-----l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C-----~k~f~~~~~l~~H~~~H~~~~~~~C~~--  218 (304)
                      +|.|+.|++.|     |..|++.+        ..|.+.++|.|++|     ++.|.+...|..|+++|+++++|.|.+  
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~--------h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   74 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSE--------HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG   74 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHH--------TSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTT
T ss_pred             cCCcCCCccccCCHHHHHHHHHhh--------ccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCC
Confidence            58899999999     77777642        47889999998753     499999999999999999999999985  


Q ss_pred             chhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHHHHHHH-HhhcCCCCCCcccCC--CcccccchhHH
Q psy3485         219 CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWAINRHT-KYTHMNTSGPTIQPE--CIKILWSFLSY  293 (304)
Q Consensus       219 C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~-r~h~~~~~~~~~C~~--C~k~F~~~~~l  293 (304)
                      |++.|.+...|..|++ .|     +++++|.|++  |+++|.+.++|.+|+ ++|++++  +|.|++  ||+.|.++++|
T Consensus        75 C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~--~~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           75 CRKSYSRLENLKTHLR-SH-----TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK--PYVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             CCCCCSSHHHHHHHHH-HT-----TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCC--CEECCSTTTCCEESSHHHH
T ss_pred             CCCcccCHHHHHHHHH-Hc-----CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC--CeeCCCCCCccccCCHHHH
Confidence            9999999999999999 78     8999999999  999999999999999 7898886  999998  99999999999


Q ss_pred             HHHHhhccc
Q psy3485         294 FIWISVDVN  302 (304)
Q Consensus       294 ~~h~~~~~~  302 (304)
                      ..|+++|+|
T Consensus       147 ~~H~~~hhg  155 (155)
T 2gli_A          147 RKHVKTVHG  155 (155)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhhcC
Confidence            999999975

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=4e-30  Score=209.51  Aligned_cols=136  Identities=23%  Similarity=0.318  Sum_probs=68.1

Q ss_pred             CCcccc--CCCchHH-----HHHHHHHHhhhhccccccCCCCCCccc--CCCcccccChHHHHHHHHhhCCCCccccc--
Q psy3485         149 DDQFFC--IHCNGCV-----LYADLLDHCKLCLRRKRKNPMRRNFMC--FACPYYCRYGSSMAIHLRTHTKEKPFACE--  217 (304)
Q Consensus       149 ~~~~~C--~~C~~~f-----l~~H~~~hC~~C~~~~~~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~--  217 (304)
                      .++|.|  ..||+.|     |..|++.|           .++++|.|  +.|++.|.+...|..|+++|+++++|.|.  
T Consensus        10 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h-----------~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~   78 (190)
T 1tf6_A           10 YKRYICSFADCGAAYNKNWKLQAHLCKH-----------TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD   78 (190)
T ss_dssp             CCCCBCSSTTTCCBCSSHHHHHHHHHHH-----------HCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSS
T ss_pred             CcceeCCCCCCcchhCCHHHHHHHHHhc-----------CCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCC
Confidence            455888  5788888     66666554           34444444  44444444444444444444444444444  


Q ss_pred             cchhhccCHHHHHHHHHhhcCCCCCCCCCcccc--ccCCccCCChHHHHHHHHhhcCCCCCCcccCC--CcccccchhHH
Q psy3485         218 MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC--AFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE--CIKILWSFLSY  293 (304)
Q Consensus       218 ~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C--~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~--C~k~F~~~~~l  293 (304)
                      .|++.|.+...|..|++..|.    .++++|.|  +.||+.|.+.++|..|+++|++++  +|.|++  ||+.|.++++|
T Consensus        79 ~C~~~f~~~~~l~~H~~~~h~----~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~~~C~k~F~~~~~L  152 (190)
T 1tf6_A           79 GCDLRFTTKANMKKHFNRFHN----IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL--PYECPHEGCDKRFSLPSRL  152 (190)
T ss_dssp             SCCCEESCHHHHHHHHHTTSS----TTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSC--SSBCCSSSCCCBCSSHHHH
T ss_pred             CCCCccCCHHHHHHHHHHhcC----CCcceeeCCCCCCccccCCHHHHHHHHHHhCCCC--CccCCCCCCCchhcCHHHH
Confidence            444444444444444422331    23444444  444444444444444444444443  444444  44444444444


Q ss_pred             HHHHhhcc
Q psy3485         294 FIWISVDV  301 (304)
Q Consensus       294 ~~h~~~~~  301 (304)
                      ..|+++|.
T Consensus       153 ~~H~~~H~  160 (190)
T 1tf6_A          153 KRHEKVHA  160 (190)
T ss_dssp             HHHHTSSC
T ss_pred             HHHHHHhC
Confidence            44444443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=1.2e-29  Score=206.78  Aligned_cols=148  Identities=22%  Similarity=0.411  Sum_probs=117.2

Q ss_pred             hhcCCCCCC-CCccccCCCchHH-HHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccc
Q psy3485         140 AARHPLFSP-DDQFFCIHCNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACE  217 (304)
Q Consensus       140 ~~~~~~~~~-~~~~~C~~C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~  217 (304)
                      +..|...+. .++|.|+.|++.| ....+..|       +..|.++++|.|+.|++.|.+...|..|+++|.++++|.|.
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H-------~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   81 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEH-------QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP   81 (190)
T ss_dssp             ----------------------CCSSHHHHHG-------GGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHH-------HHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCc
Confidence            344444443 4579999999999 55556666       67889999999999999999999999999999999999999


Q ss_pred             cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHH
Q psy3485         218 MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWI  297 (304)
Q Consensus       218 ~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~  297 (304)
                      +|++.|.+...|..|++ .|     .++++|.|+.|++.|.+...|..|+++|+++.  +|.|++||+.|.++++|..|+
T Consensus        82 ~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~  153 (190)
T 2i13_A           82 ECGKSFSQRANLRAHQR-TH-----TGEKPYACPECGKSFSQLAHLRAHQRTHTGEK--PYKCPECGKSFSREDNLHTHQ  153 (190)
T ss_dssp             TTCCEESCHHHHHHHHH-HH-----HTCCCEECTTTCCEESSHHHHHHHHHHHHCCC--CEECTTTCCEESCHHHHHHHH
T ss_pred             ccCCccCCHHHHHHHHH-hc-----CCCCCCcCCCCCCccCCHHHHHHHHHHhCCCC--CeECCCCCcccCCHHHHHHHH
Confidence            99999999999999999 77     78999999999999999999999999999996  999999999999999999999


Q ss_pred             hhccc
Q psy3485         298 SVDVN  302 (304)
Q Consensus       298 ~~~~~  302 (304)
                      ++|.+
T Consensus       154 ~~H~~  158 (190)
T 2i13_A          154 RTHTG  158 (190)
T ss_dssp             HHHHC
T ss_pred             HhcCC
Confidence            99986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.96  E-value=1.1e-28  Score=186.72  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=109.1

Q ss_pred             CCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCCh
Q psy3485         181 PMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQ  260 (304)
Q Consensus       181 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~  260 (304)
                      .+.++|.|++|++.|.+...|..|+++|.++++|.|.+|++.|.+...|..|++.+|   ...++++|.|.+|++.|.+.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~---~~~~~~~~~C~~C~~~f~~~   79 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC---MNRSEQVFTCSVCQETFRRR   79 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC---CCSCCCCEECSSSCCEESSH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh---cCCCCCCeECCCCCCccCCH
Confidence            578899999999999999999999999999999999999999999999999999642   11789999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHh-hccc
Q psy3485         261 WAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWIS-VDVN  302 (304)
Q Consensus       261 ~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~-~~~~  302 (304)
                      ..|..|+++|+++.  +|.|++|++.|.++++|..|++ +|.+
T Consensus        80 ~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           80 MELRLHMVSHTGEM--PYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHHHHSSSC--SEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHcCCCC--CccCCCccchhCCHHHHHHHHHHHCCC
Confidence            99999999999996  9999999999999999999997 6765

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.96  E-value=1.4e-29  Score=193.89  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=104.2

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCcc
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFT  256 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  256 (304)
                      ..+|.|+++|.|++||++|.+...|..|+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|++||++
T Consensus        14 ~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C~k~   87 (133)
T 2lt7_A           14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI-HH-----TGERRYQCLACGKS   87 (133)
T ss_dssp             EEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHH-HH-----HTCCCEEESSSCCE
T ss_pred             eeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcc-cc-----CCCccccCCCCCCC
Confidence            4678999999999999999999999999999999999999999999999999999999 88     99999999999999


Q ss_pred             CCChHHHHHHHHhhcCCCC----CCcccCCCcccccchhHHH
Q psy3485         257 SPTQWAINRHTKYTHMNTS----GPTIQPECIKILWSFLSYF  294 (304)
Q Consensus       257 F~~~~~L~~H~r~h~~~~~----~~~~C~~C~k~F~~~~~l~  294 (304)
                      |.+++.|..|+++||++.+    ++|+|..|++.|....+++
T Consensus        88 F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~h~  129 (133)
T 2lt7_A           88 FINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYL  129 (133)
T ss_dssp             ESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCHHH
T ss_pred             cCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccccc
Confidence            9999999999999998751    4699999999998766544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.96  E-value=7.1e-29  Score=186.53  Aligned_cols=112  Identities=24%  Similarity=0.400  Sum_probs=107.7

Q ss_pred             CCCCCcccCC--CcccccChHHHHHHHHhhCCCCccccc--cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCcc
Q psy3485         181 PMRRNFMCFA--CPYYCRYGSSMAIHLRTHTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFT  256 (304)
Q Consensus       181 ~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  256 (304)
                      .++++|.|++  |++.|.+...|..|+++|.++++|.|.  .|++.|.+...|..|++ .|     .++++|.|..|++.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RH-----TGVKPFQCKTCQRK   75 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHH-HH-----HCCCCEECTTTCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHH-Hc-----CCCCCccCCccCch
Confidence            5688999997  999999999999999999999999999  79999999999999999 67     89999999999999


Q ss_pred             CCChHHHHHHHHhhcCCCCCCccc--CCCcccccchhHHHHHHhhc
Q psy3485         257 SPTQWAINRHTKYTHMNTSGPTIQ--PECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       257 F~~~~~L~~H~r~h~~~~~~~~~C--~~C~k~F~~~~~l~~h~~~~  300 (304)
                      |.+...|..|+++|+++.  +|.|  +.||+.|.++++|..|+++|
T Consensus        76 f~~~~~l~~H~~~h~~~~--~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           76 FSRSDHLKTHTRTHTGEK--PFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ESCHHHHHHHHHHHHTCC--CEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHHhcCCC--CeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999996  9999  89999999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.95  E-value=1.2e-27  Score=181.20  Aligned_cols=112  Identities=21%  Similarity=0.398  Sum_probs=104.0

Q ss_pred             CCCCcccC--CCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccC
Q psy3485         182 MRRNFMCF--ACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTS  257 (304)
Q Consensus       182 ~~~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F  257 (304)
                      +.++|.|+  .|++.|.+..+|..|+++| ++++|.|.+|++.|.+...|..|++ .|     .++++|.|..  |++.|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f   74 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VH-----TGEKPFQCTFEGCGKRF   74 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGG-GT-----SCCCCEECCSTTCCCEE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHH-Hc-----CCCCCeeCCCCCCcCcc
Confidence            35789999  8999999999999999999 8999999999999999999999999 88     8999999986  99999


Q ss_pred             CChHHHHHHHHhhcCCCCCCcccC--CCcccccchhHHHHHHhhccc
Q psy3485         258 PTQWAINRHTKYTHMNTSGPTIQP--ECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       258 ~~~~~L~~H~r~h~~~~~~~~~C~--~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      .+...|..|+++|+++.  +|.|+  .||+.|.++++|..|+++|++
T Consensus        75 ~~~~~l~~H~~~h~~~~--~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           75 SLDFNLRTHVRIHTGDR--PYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             SCHHHHHHHHHHHHCCC--CCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCHHHHHHHHHHhCCCC--ceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            99999999999999996  99996  499999999999999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=2.4e-27  Score=193.08  Aligned_cols=146  Identities=20%  Similarity=0.312  Sum_probs=128.5

Q ss_pred             HhhcCCCCCC-CCcccc--CCCchHH-HHHHHHHHhhhhccccccCCCCCCcccC--CCcccccChHHHHHHH-Hhh-CC
Q psy3485         139 KAARHPLFSP-DDQFFC--IHCNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCF--ACPYYCRYGSSMAIHL-RTH-TK  210 (304)
Q Consensus       139 ~~~~~~~~~~-~~~~~C--~~C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~--~C~k~f~~~~~l~~H~-~~H-~~  210 (304)
                      .+..|+..+. .++|.|  ..|++.| ....+..|       +..|.++++|.|+  .|++.|.+..+|..|+ +.| .+
T Consensus        29 ~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-------~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~  101 (190)
T 1tf6_A           29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-------SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK  101 (190)
T ss_dssp             HHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHH-------HTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTT
T ss_pred             HHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHH-------HHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3455554443 457999  8899999 55555556       6678999999999  8999999999999999 567 57


Q ss_pred             CCcccc--ccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHHHHHHHHhhcCCCCCCcccCC---C
Q psy3485         211 EKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPE---C  283 (304)
Q Consensus       211 ~~~~~C--~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~---C  283 (304)
                      +++|.|  .+||+.|.+...|..|++ .|     ++++||.|+.  |+++|.+.+.|.+|+++|++     |.|+.   |
T Consensus       102 ~~~~~C~~~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~-----~~C~~~~~C  170 (190)
T 1tf6_A          102 ICVYVCHFENCGKAFKKHNQLKVHQF-SH-----TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSC  170 (190)
T ss_dssp             TSCCEECSSSSCEECSSHHHHHHHHG-GG-----SSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS-----CCCCSTTTC
T ss_pred             cceeeCCCCCCccccCCHHHHHHHHH-Hh-----CCCCCccCCCCCCCchhcCHHHHHHHHHHhCC-----CcCCCCCcC
Confidence            899999  999999999999999999 78     8999999988  99999999999999999988     78998   9


Q ss_pred             cccccchhHHHHHHhhccc
Q psy3485         284 IKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       284 ~k~F~~~~~l~~h~~~~~~  302 (304)
                      ++.|.++.+|..|+++|++
T Consensus       171 ~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          171 SFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             CCCCSCHHHHHHHHTTCC-
T ss_pred             CCccccHHHHHHHHHhhcC
Confidence            9999999999999999986

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=181.22  Aligned_cols=116  Identities=14%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHh-hCCCCc--------cccccchhhccCHHHHHHHHHhhcCCCCCCCCCccc
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRT-HTKEKP--------FACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYH  249 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~--------~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~  249 (304)
                      .+.+..+|.|.+|++.|.+...|..|+++ |.+..+        |.|.+|++.|.+...|..|++ .|     .++++|.
T Consensus        19 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~   92 (155)
T 2rpc_A           19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VH-----TGEKPFP   92 (155)
T ss_dssp             CCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTH-HH-----HCCCSEE
T ss_pred             echhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHH-hc-----CCCCccc
Confidence            34556778888888888888888888876 766654        778888888888888888888 66     7778888


Q ss_pred             ccc--CCccCCChHHHHHHHHhhcCCCCCCcccCC--CcccccchhHHHHHHhhccc
Q psy3485         250 CAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPE--CIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       250 C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~--C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |..  |++.|.+...|.+|+++|++++  +|.|++  |++.|.++++|..|+++|++
T Consensus        93 C~~~~C~~~f~~~~~L~~H~~~h~~~~--~~~C~~~~C~k~f~~~~~L~~H~~~H~~  147 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHKRTHTGEK--PFKCEFEGCDRRFANSSDRKKHMHVHTS  147 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHHTTTCSSC--SBCCSSTTCCCCBSSHHHHHHSSTTTTS
T ss_pred             CCcCCCCCccCCHHHHHHHHHhhCCCC--CccCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            877  8888888888888888888875  788886  88888888888888888775

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.92  E-value=2e-25  Score=175.67  Aligned_cols=115  Identities=20%  Similarity=0.292  Sum_probs=104.1

Q ss_pred             CCccccCCCchHH-----HHHHHHHHhhhhccccccCCCCCC--------cccCCCcccccChHHHHHHHHhhCCCCccc
Q psy3485         149 DDQFFCIHCNGCV-----LYADLLDHCKLCLRRKRKNPMRRN--------FMCFACPYYCRYGSSMAIHLRTHTKEKPFA  215 (304)
Q Consensus       149 ~~~~~C~~C~~~f-----l~~H~~~hC~~C~~~~~~h~~~~~--------~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~  215 (304)
                      ...|.|..|++.|     |..|++.          .|.+..+        |.|++|++.|.+...|..|+++|+++++|.
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~----------~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   92 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTM----------EHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP   92 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHT----------TTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEE
T ss_pred             hcccccccCCcccCCHHHHHHHHHh----------hcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCccc
Confidence            3459999999999     6666653          2555544        899999999999999999999999999999


Q ss_pred             ccc--chhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         216 CEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       216 C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      |.+  |++.|.....|..|++ .|     +++++|.|.+  |++.|.+...|.+|+++|++++  +|.|+
T Consensus        93 C~~~~C~~~f~~~~~L~~H~~-~h-----~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k--~~~c~  154 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHKR-TH-----TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK--SGPSS  154 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHHT-TT-----CSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC--CSCSC
T ss_pred             CCcCCCCCccCCHHHHHHHHH-hh-----CCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC--CCCCC
Confidence            998  9999999999999999 88     8999999997  9999999999999999999996  99996

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=5.9e-26  Score=173.64  Aligned_cols=91  Identities=15%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |.++|.|+++|+|++||+.|...+.|..|++ .|     ++++||.|++||++|.+.+.|..|+++|++++  ||.|++|
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   84 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFN-IH-----SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER--RYQCLAC   84 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHH-HH-----HCCSCEECSSSSCEESSHHHHHHHHHHHHTCC--CEEESSS
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHH-Hc-----CCCCCeeCCccCeecccccchhhhccccCCCc--cccCCCC
Confidence            4567999999999999999999999999999 78     99999999999999999999999999999996  9999999


Q ss_pred             cccccchhHHHHHHhhccc
Q psy3485         284 IKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       284 ~k~F~~~~~l~~h~~~~~~  302 (304)
                      |+.|.++++|..|+++|++
T Consensus        85 ~k~F~~~~~L~~H~~~hh~  103 (133)
T 2lt7_A           85 GKSFINYQFMSSHIKSVHS  103 (133)
T ss_dssp             CCEESSHHHHHHHHHHHTC
T ss_pred             CCCcCCHHHHHHHhHHhcC
Confidence            9999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=5.1e-25  Score=166.47  Aligned_cols=113  Identities=20%  Similarity=0.340  Sum_probs=98.2

Q ss_pred             CCCccccCCCchHH-HHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHh---hCCCCccccccchhhc
Q psy3485         148 PDDQFFCIHCNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRT---HTKEKPFACEMCNYRA  223 (304)
Q Consensus       148 ~~~~~~C~~C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~---H~~~~~~~C~~C~k~F  223 (304)
                      +.++|.|..|++.| ....+..|       +..|.++++|.|++|++.|.+...|..|++.   |.++++|.|.+|++.|
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H-------~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVH-------NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF   76 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHH-------HHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHH-------HHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCcc
Confidence            45679999999999 33333333       3345788999999999999999999999986   6889999999999999


Q ss_pred             cCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         224 ASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       224 ~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .+...|..|++ .|     .+++||.|.+|++.|.+...|++|++.+|+.
T Consensus        77 ~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           77 RRRMELRLHMV-SH-----TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             SSHHHHHHHHH-HH-----SSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHHH-Hc-----CCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            99999999999 77     8999999999999999999999999865554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=2.7e-25  Score=166.80  Aligned_cols=110  Identities=25%  Similarity=0.487  Sum_probs=97.4

Q ss_pred             CCCccccCC--CchHH-HHHHHHHHhhhhccccccCCCCCCcccC--CCcccccChHHHHHHHHhhCCCCccccccchhh
Q psy3485         148 PDDQFFCIH--CNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCF--ACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYR  222 (304)
Q Consensus       148 ~~~~~~C~~--C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~  222 (304)
                      ..++|.|.+  |++.| ....+..|       +..|.++++|.|+  .|++.|.+...|..|+++|+++++|.|.+|++.
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H-------~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMH-------SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHH-------HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHH-------HHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCch
Confidence            356799997  99999 33333333       3345778999999  799999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhhcCCCCCCCCCcccc--ccCCccCCChHHHHHHHHhh
Q psy3485         223 AASKIAIYAHMRTTHIMPDTSEERRYHC--AFCNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       223 F~~~~~L~~H~~~~H~~~~~~~~~~~~C--~~C~k~F~~~~~L~~H~r~h  270 (304)
                      |.+...|..|++ .|     +++++|.|  +.||++|.+.+.|.+|+++|
T Consensus        76 f~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           76 FSRSDHLKTHTR-TH-----TGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ESCHHHHHHHHH-HH-----HTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             hCCHHHHHHHHH-Hh-----cCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999 77     89999999  89999999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=3.9e-25  Score=167.28  Aligned_cols=114  Identities=23%  Similarity=0.387  Sum_probs=97.3

Q ss_pred             CCccccC--CCchHH-HHHHHHHHhhhhccccccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCcccccc--chhhc
Q psy3485         149 DDQFFCI--HCNGCV-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEM--CNYRA  223 (304)
Q Consensus       149 ~~~~~C~--~C~~~f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~F  223 (304)
                      .++|.|+  .|++.| ....+..|       +..| +.++|.|++|++.|.+...|..|+++|+++++|.|.+  |++.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H-------~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f   74 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKH-------LHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF   74 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHH-------HGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEE
T ss_pred             CCcccCCCCCCcCccCCHHHHHHH-------HHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCcc
Confidence            3469999  899999 44445555       5567 7899999999999999999999999999999999986  99999


Q ss_pred             cCHHHHHHHHHhhcCCCCCCCCCccccc--cCCccCCChHHHHHHHHhhcCCCCCCc
Q psy3485         224 ASKIAIYAHMRTTHIMPDTSEERRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPT  278 (304)
Q Consensus       224 ~~~~~L~~H~~~~H~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~  278 (304)
                      .+...|..|++ .|     .++++|.|+  .|+++|.+.++|.+|+++|++++  ++
T Consensus        75 ~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k--~~  123 (124)
T 1ubd_C           75 SLDFNLRTHVR-IH-----TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK--NN  123 (124)
T ss_dssp             SCHHHHHHHHH-HH-----HCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-------
T ss_pred             CCHHHHHHHHH-Hh-----CCCCceECCCCCCCCccCCHHHHHHHHHHHcccc--cC
Confidence            99999999999 77     899999996  59999999999999999999986  54

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.5e-24  Score=170.58  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=104.0

Q ss_pred             CCCcccCCCcccccChHHHHHHHH---hhCCCCccccccc-----hhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--
Q psy3485         183 RRNFMCFACPYYCRYGSSMAIHLR---THTKEKPFACEMC-----NYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--  252 (304)
Q Consensus       183 ~~~~~C~~C~k~f~~~~~l~~H~~---~H~~~~~~~C~~C-----~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--  252 (304)
                      +.+|.|+.|++.|.+..+|..|++   +|.++++|.|.+|     ++.|.+...|..|++ .|     .++++|.|.+  
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~~~   74 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH-----TGEKPHKCTFEG   74 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTH-HH-----HCCCCCCCCSTT
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHH-hc-----CCCCCccCCCCC
Confidence            457999999999999999999998   6899999998753     499999999999999 77     8899999986  


Q ss_pred             CCccCCChHHHHHHHHhhcCCCCCCcccCC--CcccccchhHHHHHH-hhccc
Q psy3485         253 CNFTSPTQWAINRHTKYTHMNTSGPTIQPE--CIKILWSFLSYFIWI-SVDVN  302 (304)
Q Consensus       253 C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~--C~k~F~~~~~l~~h~-~~~~~  302 (304)
                      |++.|.+...|..|+++|+++.  +|.|++  ||+.|.++++|..|+ ++|.+
T Consensus        75 C~~~f~~~~~l~~H~~~h~~~~--~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A           75 CRKSYSRLENLKTHLRSHTGEK--PYMCEHEGCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             CCCCCSSHHHHHHHHHHTTTCC--CEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCCcccCHHHHHHHHHHcCCCC--CeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            9999999999999999999996  999999  999999999999999 88876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.88  E-value=1.1e-22  Score=149.50  Aligned_cols=94  Identities=21%  Similarity=0.445  Sum_probs=87.1

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCC
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP  258 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~  258 (304)
                      ....+++|.|.+|++.|.....|..|+++|+++++|.|.+|++.|.....|..|++ .|     .++++|.|.+|++.|.
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~   84 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IH-----SKEKPFKCQECGKGFC   84 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGG-GS-----CCCCTTSCSSSCCCCS
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHH-Hh-----CCCCCeECCCcCCccc
Confidence            34567899999999999999999999999999999999999999999999999999 78     8999999999999999


Q ss_pred             ChHHHHHHHHhhcCCCCCCccc
Q psy3485         259 TQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       259 ~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      +...|..|+++|++++  +|.+
T Consensus        85 ~~~~L~~H~~~H~~~~--~~~~  104 (106)
T 2ee8_A           85 QSRTLAVHKTLHMQTS--SPTA  104 (106)
T ss_dssp             SHHHHHHHHHHTTSCC--CCCC
T ss_pred             CHHHHHHHHHHhCCCC--CCcC
Confidence            9999999999999996  7754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.1e-22  Score=146.57  Aligned_cols=89  Identities=26%  Similarity=0.566  Sum_probs=73.9

Q ss_pred             CCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCC
Q psy3485         180 NPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPT  259 (304)
Q Consensus       180 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  259 (304)
                      +.++++|.|++|++.|.+...|..|+++|+++++|.|.+|++.|.....|..|++ .|     .++++|.|.+|++.|.+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IH-----SDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHH-HS-----CCCCCEECSSSSCEESS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHH-Hh-----CCCCCccCCCCCCccCC
Confidence            4567788888888888888888888888888888888888888888888888888 67     77888888888888888


Q ss_pred             hHHHHHHHHhhcCCC
Q psy3485         260 QWAINRHTKYTHMNT  274 (304)
Q Consensus       260 ~~~L~~H~r~h~~~~  274 (304)
                      ...|..|+++|+++.
T Consensus        77 ~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           77 SSQLTVHLRSHTGDS   91 (96)
T ss_dssp             HHHHHHHHTTCCSCC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            888888888888875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.4e-22  Score=146.10  Aligned_cols=87  Identities=18%  Similarity=0.375  Sum_probs=83.7

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      +.++++|.|.+|++.|.+...|..|++ .|     .++++|.|..|++.|.+...|.+|+++|++++  +|.|++|++.|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f   74 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CH-----TGVKPYKCKTCDYAAADSSSLNKHLRIHSDER--PFKCQICPYAS   74 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGG-GC-----CCCCSEECSSSCCEESSHHHHHHHHHHSCCCC--CEECSSSSCEE
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHH-hc-----CCCCCEeCCCCCCccCCHHHHHHHHHHhCCCC--CccCCCCCCcc
Confidence            568899999999999999999999999 78     89999999999999999999999999999996  99999999999


Q ss_pred             cchhHHHHHHhhccc
Q psy3485         288 WSFLSYFIWISVDVN  302 (304)
Q Consensus       288 ~~~~~l~~h~~~~~~  302 (304)
                      .++++|..|+++|++
T Consensus        75 ~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           75 RNSSQLTVHLRSHTG   89 (96)
T ss_dssp             SSHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHhcC
Confidence            999999999999986

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=3.2e-24  Score=160.10  Aligned_cols=95  Identities=13%  Similarity=0.066  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhh--cCCCCCCCCCccc-cccCCccC--CChHHHHHHHHhhcCC
Q psy3485         199 SSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTT--HIMPDTSEERRYH-CAFCNFTS--PTQWAINRHTKYTHMN  273 (304)
Q Consensus       199 ~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~--H~~~~~~~~~~~~-C~~C~k~F--~~~~~L~~H~r~h~~~  273 (304)
                      ..|..|+++|+++++|.|.+|++.|.....|..|++ .  |     .+.+++. |..|++.|  .....|.+|+++|+++
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~h-----~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~   78 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGH-----YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ   78 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHH-HTCC-----CBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCC
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHH-HhCc-----cccCCCccCCCCCcccccccHHHHHHHhhccCCC
Confidence            345556666666666666666666666666666666 3  3     4444433 66666666  5666666666666665


Q ss_pred             CCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         274 TSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       274 ~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      +  +|.|++||+.|.++++|..|+++|+
T Consensus        79 ~--~~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           79 K--VLKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             S--SCBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             c--ceECCCCCCccCCHHHHHHHHHHhC
Confidence            4  6666666666666666666666554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.87  E-value=1.1e-22  Score=142.17  Aligned_cols=82  Identities=18%  Similarity=0.345  Sum_probs=54.2

Q ss_pred             ccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhH
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLS  292 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~  292 (304)
                      ||.|.+|++.|.+...|..|++ .|     .++++|.|..|++.|.+...|..|+++|++++  +|.|++||+.|.++++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~   72 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IH-----SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK--PHKCQVCGKAFSQSSN   72 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HH-----HTCCCEECSSSCCEESSHHHHHHHHHHHHTCC--CEECTTTSCEESSHHH
T ss_pred             CccCCCCcccccCchhHHHHHH-Hc-----CCCCCeeCCcCChhhCCHHHHHHHHHHhcCCC--CCcCCCcchhhCChHH
Confidence            4666666666666666666666 45     56666666666666666666666666666664  6666666666666666


Q ss_pred             HHHHHhhccc
Q psy3485         293 YFIWISVDVN  302 (304)
Q Consensus       293 l~~h~~~~~~  302 (304)
                      |..|+++|+|
T Consensus        73 l~~H~~~H~g   82 (82)
T 2kmk_A           73 LITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHhhCC
Confidence            6666666653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.87  E-value=1.4e-22  Score=144.28  Aligned_cols=85  Identities=28%  Similarity=0.548  Sum_probs=43.2

Q ss_pred             CCCcccC--CCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCCh
Q psy3485         183 RRNFMCF--ACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQ  260 (304)
Q Consensus       183 ~~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~  260 (304)
                      +++|.|+  .|++.|.+...|..|+++|+++++|.|.+|++.|.+...|..|++ .|     .++++|.|..|++.|.+.
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~   75 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-TH-----TGEKPFACDICGRKFARS   75 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH-HH-----HCCCCEECTTTCCEESSH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHH-Hc-----CCCCCccCCCCCchhCCH
Confidence            3445554  355555555555555555555555555555555555555555555 44     444555555555555555


Q ss_pred             HHHHHHHHhhcCC
Q psy3485         261 WAINRHTKYTHMN  273 (304)
Q Consensus       261 ~~L~~H~r~h~~~  273 (304)
                      +.|.+|+++|+++
T Consensus        76 ~~l~~H~~~H~~~   88 (90)
T 1a1h_A           76 DERKRHTKIHLRQ   88 (90)
T ss_dssp             HHHHHHHGGGGC-
T ss_pred             HHHHHHHHHhccc
Confidence            5555555555544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.87  E-value=1.2e-22  Score=144.55  Aligned_cols=85  Identities=16%  Similarity=0.325  Sum_probs=80.0

Q ss_pred             CCCccccc--cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         210 KEKPFACE--MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       210 ~~~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      |+++|.|.  .|++.|.+...|..|++ .|     .++++|.|..|++.|.+...|..|+++|+++.  +|.|++||+.|
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f   72 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIR-IH-----TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK--PFACDICGRKF   72 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHH-HH-----HCCCCEECTTTCCEESCHHHHHHHHHHHHCCC--CEECTTTCCEE
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHH-Hh-----CCCCCccCCCCCcccCCHHHHHHHHHHcCCCC--CccCCCCCchh
Confidence            57899998  59999999999999999 77     88999999999999999999999999999996  99999999999


Q ss_pred             cchhHHHHHHhhccc
Q psy3485         288 WSFLSYFIWISVDVN  302 (304)
Q Consensus       288 ~~~~~l~~h~~~~~~  302 (304)
                      .++++|..|+++|++
T Consensus        73 ~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           73 ARSDERKRHTKIHLR   87 (90)
T ss_dssp             SSHHHHHHHHGGGGC
T ss_pred             CCHHHHHHHHHHhcc
Confidence            999999999999986

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.87  E-value=1.2e-22  Score=141.86  Aligned_cols=82  Identities=22%  Similarity=0.460  Sum_probs=78.9

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHH
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAIN  264 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~  264 (304)
                      ||.|++|++.|.+...|..|+++|.++++|.|.+|++.|.+...|..|++ .|     .++++|.|..|++.|.+..+|.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~   74 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IH-----TGEKPHKCQVCGKAFSQSSNLI   74 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHH-HH-----HTCCCEECTTTSCEESSHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHH-Hh-----cCCCCCcCCCcchhhCChHHHH
Confidence            68999999999999999999999999999999999999999999999999 77     8999999999999999999999


Q ss_pred             HHHHhhcC
Q psy3485         265 RHTKYTHM  272 (304)
Q Consensus       265 ~H~r~h~~  272 (304)
                      +|+++|+|
T Consensus        75 ~H~~~H~g   82 (82)
T 2kmk_A           75 THSRKHTG   82 (82)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHhhCC
Confidence            99999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=3.3e-22  Score=143.78  Aligned_cols=81  Identities=26%  Similarity=0.445  Sum_probs=40.2

Q ss_pred             CCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCC--CccccccCCccCCC
Q psy3485         182 MRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE--RRYHCAFCNFTSPT  259 (304)
Q Consensus       182 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~--~~~~C~~C~k~F~~  259 (304)
                      ++++|.|++|++.|.+...|..|+++|+++++|.|.+|++.|.+...|..|++ .|     .++  ++|.|.+|++.|.+
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~~~C~~C~~~f~~   77 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SH-----DGSVGKPYICQSCGKGFSR   77 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHH-HH-----CCCCCSSBCCSSSCCCBSS
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHH-Hh-----cCCCCCceECCCccchhCC
Confidence            34455555555555555555555555555555555555555555555555554 33     232  44555555555555


Q ss_pred             hHHHHHHHH
Q psy3485         260 QWAINRHTK  268 (304)
Q Consensus       260 ~~~L~~H~r  268 (304)
                      ...|..|++
T Consensus        78 ~~~L~~H~~   86 (95)
T 2yt9_A           78 PDHLNGHIK   86 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=5e-22  Score=146.22  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=85.7

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCcc
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFT  256 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  256 (304)
                      +..|.++++|.|++|++.|.....|..|+++|  .++|.|.+|++.|.....|..|++  |     +++++|.|.+|++.
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~--H-----~~~~~~~C~~C~~~   78 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES--K-----CEYKKLTCLECMRT   78 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH--H-----CSTGGGEEGGGTEE
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH--c-----CCCCCccCccccch
Confidence            56789999999999999999999999999999  478999999999999999999995  7     89999999999999


Q ss_pred             CCChHHHHHHHH-hhcCCCCCCcccC
Q psy3485         257 SPTQWAINRHTK-YTHMNTSGPTIQP  281 (304)
Q Consensus       257 F~~~~~L~~H~r-~h~~~~~~~~~C~  281 (304)
                      |.+...|++|++ +|.++.  +|.|.
T Consensus        79 f~~~~~L~~H~~~~H~~~~--~~~~~  102 (107)
T 1wjp_A           79 FKSSFSIWRHQVEVHNQNN--MAPTS  102 (107)
T ss_dssp             CSSHHHHHHHHHHTSCCCC--CCCCC
T ss_pred             hCCHHHHHHHHHHHcCCCC--CCCCC
Confidence            999999999997 777775  88775

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.86  E-value=3.4e-22  Score=147.82  Aligned_cols=88  Identities=19%  Similarity=0.389  Sum_probs=60.5

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCC
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP  258 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~  258 (304)
                      .|.++++|.| .|++.|.+...|..|++.|.++++|.|.+|++.|.....|..|++ .|     .++++|.|.+|++.|.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~   76 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IH-----TGIKPYECNICAKRFM   76 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHT-TT-----CCCCCEECSSSCCEES
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHH-Hc-----CCCCCeeCCCCcchhc
Confidence            4666667777 677777777777777777766667777777777777777777766 55     6666677777777777


Q ss_pred             ChHHHHHHHHhhcCC
Q psy3485         259 TQWAINRHTKYTHMN  273 (304)
Q Consensus       259 ~~~~L~~H~r~h~~~  273 (304)
                      +...|.+|+++|+..
T Consensus        77 ~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           77 WRDSFHRHVTSCTKS   91 (110)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcccc
Confidence            777777777666653

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=7.9e-22  Score=144.80  Aligned_cols=88  Identities=22%  Similarity=0.388  Sum_probs=83.3

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      ..++++|.|.+|++.|.....|..|++ .|     .++++|.|.+|++.|.+...|.+|+++|++++  +|.|++|++.|
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f   83 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHER-TH-----TDERPYTCDICHKAFRRQDHLRDHRYIHSKEK--PFKCQECGKGF   83 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHH-HH-----CCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCC--TTSCSSSCCCC
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHH-Hc-----CCCCCcCCCCccchhCCHHHHHHHHHHhCCCC--CeECCCcCCcc
Confidence            456789999999999999999999999 77     89999999999999999999999999999996  99999999999


Q ss_pred             cchhHHHHHHhhcccC
Q psy3485         288 WSFLSYFIWISVDVNR  303 (304)
Q Consensus       288 ~~~~~l~~h~~~~~~~  303 (304)
                      .+++.|..|+++|.+.
T Consensus        84 ~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           84 CQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             SSHHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHHhCCC
Confidence            9999999999999863

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.85  E-value=9.8e-22  Score=145.33  Aligned_cols=87  Identities=20%  Similarity=0.244  Sum_probs=83.4

Q ss_pred             hhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         207 THTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       207 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      .|+++++|.| .|++.|.+...|..|++ .|     .++++|.|.+|++.|.+...|.+|+++|++++  +|.|++|++.
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~   74 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMS-MH-----LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK--PYECNICAKR   74 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHH-HH-----SCCCSEECTTTSCEESSSHHHHHHHTTTCCCC--CEECSSSCCE
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHH-Hc-----CCCcCccCCCCCcccCCHHHHHHHHHHcCCCC--CeeCCCCcch
Confidence            5899999999 99999999999999999 77     88999999999999999999999999999996  9999999999


Q ss_pred             ccchhHHHHHHhhccc
Q psy3485         287 LWSFLSYFIWISVDVN  302 (304)
Q Consensus       287 F~~~~~l~~h~~~~~~  302 (304)
                      |.++++|..|+++|..
T Consensus        75 f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           75 FMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             ESCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHccc
Confidence            9999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=2e-21  Score=139.68  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=82.8

Q ss_pred             CCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccccc
Q psy3485         209 TKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILW  288 (304)
Q Consensus       209 ~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~  288 (304)
                      +++++|.|.+|++.|.+...|..|++ .|     .++++|.|..|++.|.+...|.+|+++|+++..++|.|++|++.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKL-SH-----SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHH-HS-----CSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHH-hc-----CCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            57899999999999999999999999 78     8999999999999999999999999999997324999999999999


Q ss_pred             chhHHHHHHh-hcccC
Q psy3485         289 SFLSYFIWIS-VDVNR  303 (304)
Q Consensus       289 ~~~~l~~h~~-~~~~~  303 (304)
                      ++++|..|++ +|.+.
T Consensus        77 ~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           77 RPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SHHHHHHHHHHTSCCC
T ss_pred             CHHHHHHHHHHhcCCC
Confidence            9999999996 88764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=7.9e-22  Score=147.05  Aligned_cols=98  Identities=12%  Similarity=0.186  Sum_probs=89.2

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHh--hCCCCccc-cccchhhc--cCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRT--HTKEKPFA-CEMCNYRA--ASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~~~-C~~C~k~F--~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      +.+|.++++|.|++|++.|.+...|..|+++  |.+.+++. |.+|++.|  .....|..|++ .|     ++++||.|.
T Consensus        11 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~-~H-----~~~~~~~C~   84 (115)
T 2dmi_A           11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEG-KE-----DAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCC-SC-----CCCSSCBCS
T ss_pred             eeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhh-cc-----CCCcceECC
Confidence            5688999999999999999999999999999  88887765 99999999  89999999999 78     999999999


Q ss_pred             cCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         252 FCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       252 ~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      +|++.|.++..|++|+++|+...  ...++-
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~~--~~~~~~  113 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHYQ--KVSGPS  113 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTTT--CSCCCC
T ss_pred             CCCCccCCHHHHHHHHHHhCCcc--cCCCCC
Confidence            99999999999999999999875  555443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=9.2e-22  Score=144.79  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++|+++++|+|.+|++.|.....|..|++ .|     .  ++|.|.+|++.|.+...|.+|++ |++++  +|.|++|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~H-----~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~--~~~C~~C   75 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHER-LC-----R--NAAVCPYCSLRFFSPELKQEHES-KCEYK--KLTCLEC   75 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHH-HH-----H--HSBCCTTTCCCBSSHHHHHHHHH-HCSTG--GGEEGGG
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHH-HC-----C--CCccCCCCCCccCCHHHHHHHHH-cCCCC--CccCccc
Confidence            4577999999999999999999999999999 66     3  69999999999999999999996 99886  9999999


Q ss_pred             cccccchhHHHHHHh-hccc
Q psy3485         284 IKILWSFLSYFIWIS-VDVN  302 (304)
Q Consensus       284 ~k~F~~~~~l~~h~~-~~~~  302 (304)
                      ++.|.++++|..|++ +|.+
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCC
T ss_pred             cchhCCHHHHHHHHHHHcCC
Confidence            999999999999997 8865

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=136.27  Aligned_cols=82  Identities=18%  Similarity=0.318  Sum_probs=41.8

Q ss_pred             Ccccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCccccc--cCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccc
Q psy3485         212 KPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKIL  287 (304)
Q Consensus       212 ~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F  287 (304)
                      ++|.|.+  |++.|.....|..|++ .|     .++++|.|.  .|++.|.+...|.+|+++|++++  +|.|++|++.|
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f   85 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLR-TH-----TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK--PFQCGVCNRSF   85 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHH-HH-----SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCC--SCBCSSSCCBC
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHH-Hh-----CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCC--CeECCCCcCcc
Confidence            3455553  5555555555555555 34     444555553  35555555555555555555543  55555555555


Q ss_pred             cchhHHHHHHhhcc
Q psy3485         288 WSFLSYFIWISVDV  301 (304)
Q Consensus       288 ~~~~~l~~h~~~~~  301 (304)
                      .++++|..|+++|.
T Consensus        86 ~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           86 SRSDHLALHMKRHQ   99 (100)
T ss_dssp             SSHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhC
Confidence            55555555555554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.82  E-value=1.5e-20  Score=133.29  Aligned_cols=83  Identities=19%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             CCcccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCccccc--cCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         211 EKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       211 ~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      .++|.|.+  |++.|.+...|..|++ .|     .++++|.|+  .|++.|.+...|..|+++|+++.  +|.|++||+.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~   74 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLR-TH-----TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR--PFQCQKCDRA   74 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHT-TS-----CSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCC--CEECSSSSCE
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHH-hc-----CCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCC--CccCCCCCcc
Confidence            46788888  8888888888888888 67     788888886  58888888888888888888885  8888888888


Q ss_pred             ccchhHHHHHHhhcc
Q psy3485         287 LWSFLSYFIWISVDV  301 (304)
Q Consensus       287 F~~~~~l~~h~~~~~  301 (304)
                      |.++++|..|+++|.
T Consensus        75 f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           75 FSRSDHLALHMKRHF   89 (89)
T ss_dssp             ESSHHHHHHHGGGGC
T ss_pred             cCCHHHHHHHHHhhC
Confidence            888888888888873

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.82  E-value=2.6e-20  Score=135.05  Aligned_cols=86  Identities=30%  Similarity=0.535  Sum_probs=81.3

Q ss_pred             CCCCCcccCC--CcccccChHHHHHHHHhhCCCCccccc--cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCcc
Q psy3485         181 PMRRNFMCFA--CPYYCRYGSSMAIHLRTHTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFT  256 (304)
Q Consensus       181 ~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~  256 (304)
                      ...++|.|..  |++.|.....|..|+++|+++++|.|.  .|++.|.....|..|++ .|     +++++|.|.+|++.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~   84 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH-----TGAKPFQCGVCNRS   84 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHH-HH-----TSCCSCBCSSSCCB
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHH-Hh-----CCCCCeECCCCcCc
Confidence            4567899997  999999999999999999999999996  69999999999999999 78     89999999999999


Q ss_pred             CCChHHHHHHHHhhcC
Q psy3485         257 SPTQWAINRHTKYTHM  272 (304)
Q Consensus       257 F~~~~~L~~H~r~h~~  272 (304)
                      |.+...|..|+++|++
T Consensus        85 f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHhCC
Confidence            9999999999999975

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.82  E-value=9.1e-21  Score=123.42  Aligned_cols=56  Identities=27%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      ||||.|.+||++|.++++|.+|+++|++++  ||.|++||++|.++++|..|+++|+|
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ek--p~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYR--PRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCC--CEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCc--CeECCCCCCCcCCHHHHHHHhCccCC
Confidence            455555555555555555555555555553  55555555555555555555555544

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.81  E-value=1.9e-21  Score=137.90  Aligned_cols=81  Identities=21%  Similarity=0.377  Sum_probs=51.5

Q ss_pred             CccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchh
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFL  291 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~  291 (304)
                      +||.|.+|++.|.+...|..|++ .|     ++++||.|+.|++.|.+...|.+|+++|++.   +|.|+.|++.|.+++
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~---~~~c~~C~~~f~~~~   72 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIR-TH-----TGEKPFACDICGRKFARSDERKRHRDIQHIL---PILEDKVEELLSKNY   72 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-HH-----HCCCCEECTTTCCEESSHHHHHHHHHHHTHH---HHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH-Hc-----CCCCCccCCCCCCccCCHHHHHHHHHHhCCC---cchHHHHHHHHHHHh
Confidence            56666666666666666666666 45     5666666666666666666666666666642   566666666666666


Q ss_pred             HHHHHHhhcc
Q psy3485         292 SYFIWISVDV  301 (304)
Q Consensus       292 ~l~~h~~~~~  301 (304)
                      +|..||+.+.
T Consensus        73 ~L~~H~~~~h   82 (88)
T 1llm_C           73 HLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            6666666543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.80  E-value=2.9e-20  Score=131.80  Aligned_cols=83  Identities=28%  Similarity=0.504  Sum_probs=79.1

Q ss_pred             CCCcccCC--CcccccChHHHHHHHHhhCCCCccccc--cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCC
Q psy3485         183 RRNFMCFA--CPYYCRYGSSMAIHLRTHTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP  258 (304)
Q Consensus       183 ~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~  258 (304)
                      .++|.|+.  |++.|.+...|..|+++|+++++|.|.  .|++.|.+...|..|++ .|     +++++|.|+.|++.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH-----TGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHH-HH-----HCCCCEECSSSSCEES
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHH-Hc-----CCCCCccCCCCCcccC
Confidence            46899999  999999999999999999999999997  69999999999999999 77     8999999999999999


Q ss_pred             ChHHHHHHHHhhc
Q psy3485         259 TQWAINRHTKYTH  271 (304)
Q Consensus       259 ~~~~L~~H~r~h~  271 (304)
                      +.++|..|+++|.
T Consensus        77 ~~~~l~~H~~~H~   89 (89)
T 2wbs_A           77 RSDHLALHMKRHF   89 (89)
T ss_dssp             SHHHHHHHGGGGC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.80  E-value=1.7e-20  Score=122.15  Aligned_cols=57  Identities=28%  Similarity=0.468  Sum_probs=41.9

Q ss_pred             CCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         211 EKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       211 ~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||||+|.+||+.|...+.|..|++ .|     +|++||.|.+||++|..+++|++|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~H-----t~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AH-----LGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HH-----HTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-Hh-----CCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            567777777777777777777777 66     7777777777777777777777777777765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.80  E-value=4.7e-21  Score=135.82  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=79.0

Q ss_pred             CCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHH
Q psy3485         183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWA  262 (304)
Q Consensus       183 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~  262 (304)
                      ++||.|++|++.|.+...|..|+++|+++++|.|.+|++.|.....|..|++++|       ..+|.|..|++.|.+..+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~-------~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-------ILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC-------CCcchHHHHHHHHHHHhh
Confidence            4799999999999999999999999999999999999999999999999999555       379999999999999999


Q ss_pred             HHHHHHhhcCC
Q psy3485         263 INRHTKYTHMN  273 (304)
Q Consensus       263 L~~H~r~h~~~  273 (304)
                      |..|++.+|+.
T Consensus        74 L~~H~~~~h~~   84 (88)
T 1llm_C           74 LENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999988764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=3.5e-20  Score=130.53  Aligned_cols=81  Identities=23%  Similarity=0.314  Sum_probs=73.8

Q ss_pred             HHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCC---CccccccCCccCCChHHHHHHHHhhcCCCCC
Q psy3485         200 SMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE---RRYHCAFCNFTSPTQWAINRHTKYTHMNTSG  276 (304)
Q Consensus       200 ~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~---~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~  276 (304)
                      +|..|+++|+++++|.|.+|++.|.....|..|++++|     ...   ++|.|..|++.|.+...|..|+++|+++.  
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~-----~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~--   74 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH-----DPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD--   74 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTT-----CSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCC--
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhc-----CCcCCCcceECCCCCChhCCHHHHHHHHHHccCCC--
Confidence            46679999999999999999999999999999998666     443   89999999999999999999999999997  


Q ss_pred             CcccCCCcccc
Q psy3485         277 PTIQPECIKIL  287 (304)
Q Consensus       277 ~~~C~~C~k~F  287 (304)
                      ++.|..||.+|
T Consensus        75 ~~~~~~~~~~~   85 (86)
T 1x6h_A           75 GVEGENSGPSS   85 (86)
T ss_dssp             SCCCCCCCCCC
T ss_pred             CcccCCCCCCC
Confidence            99999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=1.8e-19  Score=124.76  Aligned_cols=73  Identities=12%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             CCCCcccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHHHHHHHHhhcCCCCCCcccCCCc
Q psy3485         209 TKEKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPECI  284 (304)
Q Consensus       209 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~  284 (304)
                      +++++|.|..  |++.|.+...|..|++..|     +++++|.|..  |++.|.++.+|++|+++|++++  +|.|++||
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H-----~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C~   75 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH-----IHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR--DYICEFSG   75 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGG-----GSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSC--CCSCCSSS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHh-----CCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCC--CeeCCCCC
Confidence            5677788876  8888888888888887557     7788888887  8888888888888888888875  88888888


Q ss_pred             cccc
Q psy3485         285 KILW  288 (304)
Q Consensus       285 k~F~  288 (304)
                      +.|.
T Consensus        76 k~F~   79 (79)
T 2dlk_A           76 PSSG   79 (79)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8874

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.78  E-value=2e-19  Score=126.21  Aligned_cols=76  Identities=22%  Similarity=0.495  Sum_probs=37.1

Q ss_pred             ccc--CCCcccccChHHHHHHHHhhCCCCcccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCcccccc---CCccCC
Q psy3485         186 FMC--FACPYYCRYGSSMAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF---CNFTSP  258 (304)
Q Consensus       186 ~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~---C~k~F~  258 (304)
                      |.|  +.|++.|.+...|..|+++|+++++|+|++  |++.|.+...|..|++ .|     ++   |.|..   |++.|.
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~---~~C~~~~~C~~~f~   72 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VH-----AG---YPCKKDDSCSFVGK   72 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHH-HH-----HS---EECCSCSSCCCEES
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHH-Hh-----CC---CCCCCCCCCCCccC
Confidence            444  445555555555555554455455555544  5555555555555554 23     22   44544   555555


Q ss_pred             ChHHHHHHHHhh
Q psy3485         259 TQWAINRHTKYT  270 (304)
Q Consensus       259 ~~~~L~~H~r~h  270 (304)
                      +.++|.+|+++|
T Consensus        73 ~~~~l~~H~~~h   84 (85)
T 2j7j_A           73 TWTLYLKHVAEC   84 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhc
Confidence            555555554444

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.77  E-value=2e-19  Score=126.14  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=74.7

Q ss_pred             cccc--ccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHHHHHHHHhhcCCCCCCcccCC---Ccc
Q psy3485         213 PFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPE---CIK  285 (304)
Q Consensus       213 ~~~C--~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~---C~k  285 (304)
                      ||.|  ++||+.|.+...|..|++ .|     .++++|.|+.  |+++|.+...|.+|+++|++     |.|+.   |++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~   69 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SH-----TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSF   69 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HH-----HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-Hh-----CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCC
Confidence            6899  999999999999999999 77     8999999998  99999999999999999998     89999   999


Q ss_pred             cccchhHHHHHHhhcc
Q psy3485         286 ILWSFLSYFIWISVDV  301 (304)
Q Consensus       286 ~F~~~~~l~~h~~~~~  301 (304)
                      .|.+.++|..|+++|+
T Consensus        70 ~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           70 VGKTWTLYLKHVAECH   85 (85)
T ss_dssp             EESSHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHhcC
Confidence            9999999999999885

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.77  E-value=4.8e-20  Score=140.22  Aligned_cols=114  Identities=13%  Similarity=0.216  Sum_probs=91.2

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHhh---CCCCccccccchhhcc------CHHHHHHHHHhhcCCCCCCCCCc
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRTH---TKEKPFACEMCNYRAA------SKIAIYAHMRTTHIMPDTSEERR  247 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H---~~~~~~~C~~C~k~F~------~~~~L~~H~~~~H~~~~~~~~~~  247 (304)
                      ..++.+.++|.|...+...  ...+..|.+.|   ..++++.|++|++.|.      ....|..|++  |     ++++|
T Consensus         4 ~~~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~--h-----~~~~~   74 (129)
T 2wbt_A            4 SDVDSGSKKYLSNHKGIFI--HVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA--S-----KAISQ   74 (129)
T ss_dssp             -CCCTTCCGGGGCSSCEEE--ECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHHH--H-----HHHCS
T ss_pred             chhcccccccccccCCeee--eecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHHH--h-----CCCCC
Confidence            3578889999887755433  23344554433   3457789999988877      6677877775  4     68999


Q ss_pred             cccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcccC
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      |.|.+||+.|.+..+|..|+++|  ++  ||.|++||+.|.++++|..|+++|++-
T Consensus        75 ~~C~~C~k~f~~~~~l~~H~~~H--~~--~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           75 FVCPLCLMPFSSSVSLKQHIRYT--EH--TKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHT--CC--CCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             eECCCCCcccCCHhHHHHHHHHC--CC--CCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999999998  53  999999999999999999999999874

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.9e-18  Score=119.53  Aligned_cols=72  Identities=25%  Similarity=0.433  Sum_probs=68.3

Q ss_pred             CCCCCcccCC--CcccccChHHHHHHHH-hhCCCCcccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCc
Q psy3485         181 PMRRNFMCFA--CPYYCRYGSSMAIHLR-THTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNF  255 (304)
Q Consensus       181 ~~~~~~~C~~--C~k~f~~~~~l~~H~~-~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  255 (304)
                      .++++|.|..  |++.|.+...|..|++ .|+++++|.|.+  |++.|.....|..|++ .|     ++++||.|.+||+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C~k   76 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LH-----SDTRDYICEFSGP   76 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHH-HH-----HTSCCCSCCSSSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHH-Hh-----CCCCCeeCCCCCC
Confidence            5678999997  9999999999999999 799999999999  9999999999999999 78     8999999999999


Q ss_pred             cCC
Q psy3485         256 TSP  258 (304)
Q Consensus       256 ~F~  258 (304)
                      +|.
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            995

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=4.5e-19  Score=128.20  Aligned_cols=82  Identities=17%  Similarity=0.265  Sum_probs=72.3

Q ss_pred             ccccChHHHHHHHHhhCCCCccccccchhhcc-CHHHHHHHHHhhcCCCCCCC-CCccccccCCccCCChHHHHHHHHhh
Q psy3485         193 YYCRYGSSMAIHLRTHTKEKPFACEMCNYRAA-SKIAIYAHMRTTHIMPDTSE-ERRYHCAFCNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       193 k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~-~~~~L~~H~~~~H~~~~~~~-~~~~~C~~C~k~F~~~~~L~~H~r~h  270 (304)
                      .++.....+..|+++|+++++|.|.+|++.|. ....|..|++ .|     .+ +++|.|.+|++.|.++..|++|+++|
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~-~h-----~~~~~~~~C~~C~k~F~~~~~L~~H~~~h   77 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHME-VC-----QKLQDALKCQHCRKQFKSKAGLNYHTMAE   77 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHH-HH-----HHHHHHHSCSSSCCCCSCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHH-HH-----cCCCCCEECCCCCCccCCHHHHHHHHHHH
Confidence            45666777889999999999999999999999 9999999999 56     66 89999999999999999999999999


Q ss_pred             cCCCCCCcccCC
Q psy3485         271 HMNTSGPTIQPE  282 (304)
Q Consensus       271 ~~~~~~~~~C~~  282 (304)
                      |+++  ++.-..
T Consensus        78 ~~~k--p~~~~~   87 (98)
T 2gqj_A           78 HSAK--PSDAEA   87 (98)
T ss_dssp             SCSC--SSCCCC
T ss_pred             cCCC--CCCCCC
Confidence            9996  654433

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.73  E-value=5.1e-19  Score=134.50  Aligned_cols=110  Identities=17%  Similarity=0.201  Sum_probs=89.1

Q ss_pred             CCCCccccCCCchH--H-HHHHHHHHhhhhccccccCCCCCCcccCCCccccc------ChHHHHHHHHhhCCCCccccc
Q psy3485         147 SPDDQFFCIHCNGC--V-LYADLLDHCKLCLRRKRKNPMRRNFMCFACPYYCR------YGSSMAIHLRTHTKEKPFACE  217 (304)
Q Consensus       147 ~~~~~~~C~~C~~~--f-l~~H~~~hC~~C~~~~~~h~~~~~~~C~~C~k~f~------~~~~l~~H~~~H~~~~~~~C~  217 (304)
                      .+.++|.|...+..  | +..+++.+        ......+.+.|++|++.|.      ....|..|+ +|++++||.|+
T Consensus         8 ~~~k~~~~~~k~~~~~~s~ee~~~~~--------~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~   78 (129)
T 2wbt_A            8 SGSKKYLSNHKGIFIHVTLEELKRYH--------QLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCP   78 (129)
T ss_dssp             TTCCGGGGCSSCEEEECCHHHHHHHT--------TSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECT
T ss_pred             ccccccccccCCeeeeecHHhhhccc--------cCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECC
Confidence            44567888776643  3 66665554        3334457788988887776      556666666 69999999999


Q ss_pred             cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         218 MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       218 ~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||+.|.....|..|++ .|       ++||.|..||+.|.++++|++|+++||+.
T Consensus        79 ~C~k~f~~~~~l~~H~~-~H-------~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           79 LCLMPFSSSVSLKQHIR-YT-------EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             TTCCEESSHHHHHHHHH-HT-------CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCcccCCHhHHHHHHH-HC-------CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999 66       57899999999999999999999999986

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.3e-18  Score=118.63  Aligned_cols=69  Identities=25%  Similarity=0.527  Sum_probs=54.2

Q ss_pred             HHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCC-CccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         201 MAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEE-RRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       201 l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~-~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      |..|+++|+++++|.|.+|++.|.....|..|++.+|     +++ ++|.|+.|++.|.+...|.+|+++||+..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h-----~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH-----TENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHS-----SSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhc-----CCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            4457778888888888888888888888888887567     653 78888888888888888888888877764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=7e-18  Score=122.06  Aligned_cols=68  Identities=21%  Similarity=0.386  Sum_probs=34.2

Q ss_pred             CCCCccccccchhhccCHHHHHHHHHhhcCCCCCC---CCCccccccCCccCCChHHHHHH-HHhhcCCCCCCcccCCC
Q psy3485         209 TKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTS---EERRYHCAFCNFTSPTQWAINRH-TKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       209 ~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~---~~~~~~C~~C~k~F~~~~~L~~H-~r~h~~~~~~~~~C~~C  283 (304)
                      +|++||.|.+||+.|..++.|..|+++.|     +   +++||.|..||++|.+++.|.+| +++|++++  ||.|.++
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H-----~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek--py~C~~~   85 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEH-----PNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE--NFKLTMV   85 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHC-----SSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCC--CEEEEEC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhC-----CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCC--CeeCCcc
Confidence            34455555555555555555555554334     2   24455555555555555555555 45555553  5555543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.2e-17  Score=114.99  Aligned_cols=65  Identities=18%  Similarity=0.395  Sum_probs=41.6

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      +.++++|.|.+|++.|.....|..|++ .|     +++++|.|.+|++.|.+...|.+|+++|++++  ||+|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~--p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRR-TH-----TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG--PSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHT-TT-----CCSCSEECSSSCCEESSHHHHHHHGGGSCCCC--CCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHH-Hc-----CCCcCeeCCCCCCccCCHHHHHHHHHHhCCCC--CCCC
Confidence            455666666666666666666666666 55     56666666666666666666666666666664  6655

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.8e-17  Score=113.12  Aligned_cols=67  Identities=27%  Similarity=0.472  Sum_probs=63.8

Q ss_pred             ccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       178 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      ..+.++++|.|++|++.|.....|..|+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~-~H-----~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VH-----TGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGG-GS-----CCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHH-Hh-----CCCCCCCC
Confidence            456778999999999999999999999999999999999999999999999999999 88     99999998

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3.8e-18  Score=123.29  Aligned_cols=73  Identities=14%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             hccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCC-ChHHHHHHHHhhcC-CCCCCcccCCCcccccchhHHHHHHhh
Q psy3485         222 RAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSP-TQWAINRHTKYTHM-NTSGPTIQPECIKILWSFLSYFIWISV  299 (304)
Q Consensus       222 ~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~-~~~~L~~H~r~h~~-~~~~~~~C~~C~k~F~~~~~l~~h~~~  299 (304)
                      .+.....+..|++ .|     +++++|.|.+|++.|. ++..|++|+++|++ ++  +|.|++|++.|.++++|..|+++
T Consensus         5 s~~~~~~~~~h~~-~h-----~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~--~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A            5 SSGPGGPEEQWQR-AI-----HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD--ALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CCCCCCSCSHHHH-TT-----TTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHH--HHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHH-Hh-----ccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCC--CEECCCCCCccCCHHHHHHHHHH
Confidence            4555566788999 88     9999999999999999 99999999999999 75  99999999999999999999999


Q ss_pred             ccc
Q psy3485         300 DVN  302 (304)
Q Consensus       300 ~~~  302 (304)
                      |++
T Consensus        77 h~~   79 (98)
T 2gqj_A           77 EHS   79 (98)
T ss_dssp             HSC
T ss_pred             HcC
Confidence            976

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.68  E-value=3.9e-17  Score=111.49  Aligned_cols=61  Identities=21%  Similarity=0.465  Sum_probs=34.8

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      +.++++|+|.+|++.|.....|..|++ .|     +++++|.|.+|++.|.++..|.+|+++|++++
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   72 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKT-VH-----TGEKPYRCNICGAQFNRPANLKTHTRIHSGEK   72 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHH-HH-----CCCCSEECTTTCCEESCHHHHHHHHHHHCCSC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHH-Hc-----CCCCCEECCCCCchhCCHHHHHHHHHhcCCCC
Confidence            445555555555555555555555555 44     55555555555555555555555555555553

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.6e-17  Score=112.75  Aligned_cols=62  Identities=23%  Similarity=0.470  Sum_probs=39.6

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++|+++++|.|.+|++.|.....|..|++ .|     .++++|.|.+|++.|.+...|++|+++|+++
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQR-VH-----TGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHH-GG-----GCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHH-hc-----CCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            45666666666666666666666666666 55     5666666666666666666666666666655

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=8.3e-17  Score=113.00  Aligned_cols=76  Identities=13%  Similarity=0.247  Sum_probs=70.7

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHhhCCC----CccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKE----KPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~----~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      +.+|.++++|.|++|++.|.....|..|+++|++.    ++|.|.+|++.|.....|..|++ .|     .+++++.|..
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~-~h-----~~~~~~~~~~   80 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NC-----AGPDGVEGEN   80 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHH-HC-----CCCCSCCCCC
T ss_pred             cceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHH-Hc-----cCCCCcccCC
Confidence            67899999999999999999999999999987665    79999999999999999999999 77     8999999999


Q ss_pred             CCccCC
Q psy3485         253 CNFTSP  258 (304)
Q Consensus       253 C~k~F~  258 (304)
                      |+.+|.
T Consensus        81 ~~~~~g   86 (86)
T 1x6h_A           81 SGPSSG   86 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            998873

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=2.9e-17  Score=118.78  Aligned_cols=72  Identities=15%  Similarity=0.403  Sum_probs=65.3

Q ss_pred             ccCCCCCCcccCCCcccccChHHHHHHHH-hh---CCCCccccccchhhccCHHHHHHH-HHhhcCCCCCCCCCcccccc
Q psy3485         178 RKNPMRRNFMCFACPYYCRYGSSMAIHLR-TH---TKEKPFACEMCNYRAASKIAIYAH-MRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       178 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~-~H---~~~~~~~C~~C~k~F~~~~~L~~H-~~~~H~~~~~~~~~~~~C~~  252 (304)
                      ....+++||.|+.|++.|..+..|..|++ +|   ++++||.|.+||+.|..++.|..| ++ .|     ++++||.|.+
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r-~H-----tgekpy~C~~   84 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLK-YH-----PGEENFKLTM   84 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHH-TS-----TTCCCEEEEE
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHH-hc-----CCCCCeeCCc
Confidence            34567899999999999999999999998 49   678999999999999999999999 67 89     9999999998


Q ss_pred             CCc
Q psy3485         253 CNF  255 (304)
Q Consensus       253 C~k  255 (304)
                      +.+
T Consensus        85 ~~~   87 (102)
T 2ghf_A           85 VKR   87 (102)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.67  E-value=6.7e-17  Score=112.81  Aligned_cols=54  Identities=24%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHH
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHT  267 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~  267 (304)
                      +.+.++|.|++||+.|..+..|..|++ .|     ++++||.|.+|+++|.++.+|.+|+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~   76 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLR-LL-----HAAQVFPCKYCPATFYSSPGLTRHI   76 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHH-TT-----SCSSSEECTTSSCEESSHHHHHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhh-hc-----cCCCccCCCCCCCEeCCHHHHHHhC
Confidence            444455555555555555555555555 44     4555555555555555555555554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=3.2e-17  Score=111.29  Aligned_cols=59  Identities=17%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      +++++|.|.+|++.|.....|.+|+++|++++  +|.|++|++.|.++++|..|+++|++.
T Consensus        10 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~--~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEK--PYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGGGCSC--CEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHHhcCCCC--CeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            89999999999999999999999999999996  999999999999999999999999863

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=7.2e-17  Score=108.89  Aligned_cols=61  Identities=28%  Similarity=0.633  Sum_probs=47.7

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      |+++++|.|.+|++.|.....|..|++ .|     +++++|.|.+|++.|.+...|.+|+++|++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHER-IH-----CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHG-GG-----CCSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHH-Hc-----CCCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            667777888888888888888888877 56     77777888888888888888888888887775

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=3.5e-17  Score=117.53  Aligned_cols=75  Identities=13%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             cccccChHHHHHHHHhhCCCCccccccchhhc-cCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHH-HHh
Q psy3485         192 PYYCRYGSSMAIHLRTHTKEKPFACEMCNYRA-ASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRH-TKY  269 (304)
Q Consensus       192 ~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F-~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H-~r~  269 (304)
                      ...|.....|..|++.|.++++|.|++|++.| .+...|..|++ .|      ++++|.|.+|||.|.+++.|++| +++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~-~h------~~k~~~C~~Cgk~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME-NC------KQEMFTCHHCGKQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHH-HH------CCCCCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHH-HH------CCCCeECCCCCCeeCCHHHHHHHhHHh
Confidence            44667777888888888888888888888888 78888888888 55      35788888888888888888888 777


Q ss_pred             hcCC
Q psy3485         270 THMN  273 (304)
Q Consensus       270 h~~~  273 (304)
                      |+++
T Consensus        86 H~~~   89 (96)
T 2ctd_A           86 HNSL   89 (96)
T ss_dssp             TCCC
T ss_pred             cCCC
Confidence            7665

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.67  E-value=5.8e-17  Score=104.62  Aligned_cols=57  Identities=12%  Similarity=0.118  Sum_probs=40.7

Q ss_pred             CCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         244 EERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       244 ~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |+++|.|..|++.|.+...|..|+++|++++  +|.|++|++.|.++++|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEK--PYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCC--CEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCC--CcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            3567777777777777777777777777775  77787788777777777777777753

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.66  E-value=9.6e-17  Score=109.50  Aligned_cols=65  Identities=29%  Similarity=0.587  Sum_probs=61.3

Q ss_pred             ccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcc
Q psy3485         178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRY  248 (304)
Q Consensus       178 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~  248 (304)
                      ..+.++++|.|++|++.|.+...|..|+++|+++++|+|.+|++.|.....|..|++ .|     ++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IH-----SGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHH-HH-----CCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHH-hc-----CCCCCC
Confidence            467789999999999999999999999999999999999999999999999999999 78     899886

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=8.7e-17  Score=115.46  Aligned_cols=74  Identities=12%  Similarity=0.039  Sum_probs=62.6

Q ss_pred             hhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccC-CChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHH-H
Q psy3485         220 NYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTS-PTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIW-I  297 (304)
Q Consensus       220 ~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F-~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h-~  297 (304)
                      ...|.....|..|++ .|     .++++|.|+.|++.| .++.+|+.|+++| +++  +|.|++|||.|.++++|..| +
T Consensus        13 ~~~~~~~~~~~~~~~-~~-----~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k--~~~C~~Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYL-EI-----VDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQE--MFTCHHCGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             CCSSCTTCHHHHHHH-HH-----HHTSCEECTTTCSCEESSHHHHHHHHHHH-CCC--CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHH-Hh-----cCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCC--CeECCCCCCeeCCHHHHHHHhH
Confidence            346777888888888 66     788899999999999 8999999999998 775  89999999999999999999 8


Q ss_pred             hhccc
Q psy3485         298 SVDVN  302 (304)
Q Consensus       298 ~~~~~  302 (304)
                      ++|++
T Consensus        84 ~~H~~   88 (96)
T 2ctd_A           84 ANHNS   88 (96)
T ss_dssp             HHTCC
T ss_pred             HhcCC
Confidence            88865

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.5e-17  Score=109.04  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhc--CCCCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTH--MNTSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~--~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      ++++||.|+.||+.|.+..+|..|++++|  ++  ++|.|+.||+.|.++++|..|+++|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~--~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV--KVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSC--CCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCC--cCeECCCCCCccCCHHHHHHHHHHHc
Confidence            44455555555555555555555554422  22  24555555555555555555554443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.9e-17  Score=113.02  Aligned_cols=67  Identities=18%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             HHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHh-hcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         229 IYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKY-THMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       229 L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~-h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |.+|++ .|     ++++||.|.+|++.|.+...|.+|++. |.++. ++|.|++|++.|.++++|..|+++|++
T Consensus         3 ~~~H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~-~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            3 SGSSGR-TH-----SGEKPYECYICHARFTQSGTMKMHILQKHTENV-AKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCC-CC-----SCCCSEECTTTCCEESCHHHHHHHHHHHSSSSC-SSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCcccc-cc-----CCCCCeECCCcCchhCCHHHHHHHHHHhcCCCC-CccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            456888 88     999999999999999999999999984 55542 499999999999999999999998765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=9.1e-17  Score=112.14  Aligned_cols=58  Identities=16%  Similarity=0.162  Sum_probs=54.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHH-hhccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWI-SVDVN  302 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~-~~~~~  302 (304)
                      ...++|.|++||+.|.++..|.+|+++|++++  ||.|++|+|.|.++++|..|| ++|.+
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k--~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQ--VFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSCSS--SEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccCCC--ccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            67889999999999999999999999999996  999999999999999999998 57764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.6e-16  Score=107.11  Aligned_cols=58  Identities=12%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +++++|.|..|++.|.+...|.+|+++|++++  +|.|++|++.|.++++|..|+++|++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDR--PFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSC--SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            89999999999999999999999999999996  99999999999999999999999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=9.8e-17  Score=106.85  Aligned_cols=64  Identities=22%  Similarity=0.372  Sum_probs=58.5

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++|+++++|.|++||+.|.+...|..|++++|.    +++++|.|+.|++.|.+.+.|.+|+++||+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~----~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK----RNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS----SSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC----CCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            569999999999999999999999999996461    4889999999999999999999999999973

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.63  E-value=1.3e-16  Score=103.02  Aligned_cols=57  Identities=25%  Similarity=0.560  Sum_probs=39.0

Q ss_pred             CCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         210 KEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       210 ~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      |+++|+|.+|++.|.+...|..|++ .|     ++++||.|+.|++.|.+..+|.+|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLR-TH-----TGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHH-HH-----HCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHH-Hc-----CCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4567777777777777777777777 56     677777777777777777777777777764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.2e-16  Score=108.65  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             HHHHHHHHhhcCCCCCCCCCccccc--cCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         227 IAIYAHMRTTHIMPDTSEERRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       227 ~~L~~H~~~~H~~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      ..|..|+...|     +++++|.|+  .|++.|.+...|.+|+++|++++  +|.|++||+.|.++++|..|+++|+
T Consensus         4 ~~~~~~~~~~~-----~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            4 HPMNNLLNYVV-----PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ----CTTSCCC-----CCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCC--CEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccchhhccC-----CCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCC--CeECCCCCchhCCHHHHHHHHHhcC
Confidence            34556666667     888999997  59999999999999999999886  8999999999999999999998874

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=4.3e-16  Score=101.61  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=34.6

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHH-hhccc
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWI-SVDVN  302 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~-~~~~~  302 (304)
                      +||.|..|++.|.+...|.+|+++|++++  +|.|++|++.|.++++|..|+ ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK--PYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC--SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCC--CccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            35666666666666666666666666664  666666666666666666665 45554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=7.8e-16  Score=99.22  Aligned_cols=55  Identities=33%  Similarity=0.724  Sum_probs=32.8

Q ss_pred             ccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||.|.+||+.|.+.+.|..|++ .|     +++++|.|+.|++.|.+...|.+|+++|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-TH-----TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HT-----SSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hc-----CCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            4556666666666666666665 45     5555666666666666666666666665555

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=8e-16  Score=105.97  Aligned_cols=58  Identities=24%  Similarity=0.555  Sum_probs=31.2

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCC---CCccccccCCccCCChHHHHHHHHhhc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE---ERRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~---~~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |+++++|+|.+|++.|.....|..|++ .|     .+   +++|.|.+|++.|.++..|.+|++.+|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~h-----~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQR-KH-----AETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHH-HH-----HHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHH-Hh-----hccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            455555555555555555555555555 33     32   455555555555555555555554333

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=6.6e-16  Score=106.40  Aligned_cols=58  Identities=17%  Similarity=0.106  Sum_probs=53.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcC---CCCCCcccCCCcccccchhHHHHHH-hhccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHM---NTSGPTIQPECIKILWSFLSYFIWI-SVDVN  302 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~---~~~~~~~C~~C~k~F~~~~~l~~h~-~~~~~  302 (304)
                      ++++||.|.+|++.|.+...|.+|+++|++   ++  +|.|++|++.|.++++|..|+ ++|.+
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~--~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL--RFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTC--CEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCc--ccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            899999999999999999999999999997   54  999999999999999999999 45543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.60  E-value=9.4e-16  Score=98.84  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      ||.|..||+.|.+.+.|..|+++|+++.  +|.|++||+.|.++++|..|+++|++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVR--PYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC--CEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCC--CccCCCCCchhcCHHHHHHHHHHhcc
Confidence            4666666666666666666666666664  66666666666666666666666654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=2.4e-18  Score=116.97  Aligned_cols=71  Identities=13%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             hHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCC
Q psy3485         198 GSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGP  277 (304)
Q Consensus       198 ~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~  277 (304)
                      +..|..|+++|+++++|.|.+||+.|.+...|..             +++|.|..||+.|.+.+.|..|+++|++++  +
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~--~   67 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------------RKTPMCEKCRKDSCQEAALNKDEGNESGKK--T   67 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCC--C
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------------CCCCCCCCCChhhcCHHHHHHHHHhhcCCC--C
Confidence            3456667777777777777777777776555433             456777777777777777777777777765  7


Q ss_pred             cccCCC
Q psy3485         278 TIQPEC  283 (304)
Q Consensus       278 ~~C~~C  283 (304)
                      |.|++|
T Consensus        68 ~~C~~C   73 (73)
T 2ctu_A           68 SGPSSG   73 (73)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            777766

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=9.8e-16  Score=104.09  Aligned_cols=66  Identities=21%  Similarity=0.458  Sum_probs=48.9

Q ss_pred             HHHHHHH-hhCCCCccccc--cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhc
Q psy3485         200 SMAIHLR-THTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       200 ~l~~H~~-~H~~~~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      .|..|+. +|+++++|.|.  .|++.|.....|..|++ .|     .++++|.|.+||+.|.+...|.+|+++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IH-----TGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHH-HH-----HCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHH-hh-----CCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3444544 37788888886  48888888888888887 66     77788888888888888888888888774

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5.1e-15  Score=96.41  Aligned_cols=55  Identities=29%  Similarity=0.580  Sum_probs=32.2

Q ss_pred             CccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHH-HhhcC
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHT-KYTHM  272 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~-r~h~~  272 (304)
                      +||.|.+|++.|.....|..|++ .|     +++++|.|+.|++.|.+...|.+|+ ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h-----~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYR-SH-----TNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TT-----TSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHH-Hh-----CCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            35566666666666666666665 45     5556666666666666666666664 34444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=104.12  Aligned_cols=63  Identities=8%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             ccccccchhhccCHHHHHHHHHhhcCCCCCCCCCc--------cccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERR--------YHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~--------~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      .|.|.+|++.|.....|..|++++|     +++++        |.|..|++.|.++..|++|+++|++++  ||.|+.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H-----~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEH-----VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK--SGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTT-----TCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCC--CCSSCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhc-----cCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCC--CCCCCC
Confidence            4678888888888888888888447     77776        889999999999999999999988886  888863

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.3e-14  Score=95.24  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC-CCcccccchhHHHHHHhhccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP-ECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~-~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      .+++||.|..|++.|. .+.|..|+++ ++++  ||.|+ .||+.|..++.|..|+++|..
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~--p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRL--PVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSS--EEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCc--CccCCcccCcccccHHHHHHHHHhhcc
Confidence            6788888888888888 8888888888 7775  88888 888888888888888888753

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.9e-14  Score=101.19  Aligned_cols=63  Identities=14%  Similarity=0.110  Sum_probs=58.8

Q ss_pred             CCcccCCCcccccChHHHHHHHHh-hCCCCc--------cccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRT-HTKEKP--------FACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~--------~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      ..|.|++|++.|.+...|..|+++ |+++++        |.|.+|++.|.....|..|++ .|     ++++||.|+.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~   95 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VH-----TGEKSGPSSG   95 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHH-HH-----HTCCCCSSCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHH-hc-----CCCCCCCCCC
Confidence            457899999999999999999998 999888        999999999999999999999 78     9999999973

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.46  E-value=6.4e-14  Score=94.74  Aligned_cols=56  Identities=16%  Similarity=0.080  Sum_probs=48.9

Q ss_pred             CCCCcccccc--CCccCCChHHHHHHHHhhcCCCCCCcccCC--CcccccchhHHHHHHhhc
Q psy3485         243 SEERRYHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPE--CIKILWSFLSYFIWISVD  300 (304)
Q Consensus       243 ~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~--C~k~F~~~~~l~~h~~~~  300 (304)
                      ...++|.|..  |++.|.+...|.+|+++|++++  +|.|++  |++.|.++++|..|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEK--PFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSC--SEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCC--CccCCCCCCCcccCCHHHHHhHhhcC
Confidence            6678899988  9999999999999999998886  899965  999999999999998876

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.42  E-value=1e-13  Score=88.20  Aligned_cols=46  Identities=20%  Similarity=0.116  Sum_probs=38.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHH-hhcCCCCCCcccCCCcccccch
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTK-YTHMNTSGPTIQPECIKILWSF  290 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r-~h~~~~~~~~~C~~C~k~F~~~  290 (304)
                      ++++||.|.+|++.|.....|.+|++ +|++++  +|.|++|++.|+++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k--~~~C~~C~k~F~~~   54 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQVWVSGPSSG   54 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCC--CCCSSSSCCSSCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCC--CccCCCCCCCCCCC
Confidence            77888888888888888888888886 788875  88888888888764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3e-15  Score=101.45  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             cccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         177 KRKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       177 ~~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      +.+|.++++|.|++|++.|.....|..       +++|.|.+||+.|.....|..|++ .|     +++++|.|++|
T Consensus        10 ~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~-~H-----~~~~~~~C~~C   73 (73)
T 2ctu_A           10 QKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEG-NE-----SGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSS-CC-----CCCCCSSCCCC
T ss_pred             HHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHH-hh-----cCCCCCCCCCC
Confidence            678899999999999999999988876       789999999999999999999999 78     99999999988

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.1e-13  Score=91.85  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=33.5

Q ss_pred             CCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc-cCCccCCChHHHHHHHHhhcCC
Q psy3485         209 TKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA-FCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       209 ~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~-~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .+.++|+|.+||+.|. .+.|..|++ .      ++++||.|+ .||++|..++.|..|+++|...
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~-~------~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQY-Q------CPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHH-H------CSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHH-H------cCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            3455566666666666 666666665 2      245566666 6666666666666666665544

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.38  E-value=2.1e-13  Score=83.59  Aligned_cols=45  Identities=13%  Similarity=0.226  Sum_probs=35.0

Q ss_pred             HHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       231 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +|++ .|     ++++||.|++||+.|.+++.|.+|+++|++++  +|.|++|
T Consensus         2 ~H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emk_A            2 SSGS-SG-----TGEKPYECKECGKAFSQTTHLIQHQRVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCC-CC-----SSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCC--CSSCCCC
T ss_pred             CCCC-cc-----CCCCceECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            3666 66     77888888888888888888888888888775  7888776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.6e-13  Score=83.24  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..||++|.++++|++|+++|++++  +|.|++|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK--PSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSSSCEESSHHHHHHHHHHHTSSC--SCSCCCC
T ss_pred             CCCcCccCCCCCcccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            77777777777777777777777777777775  7777776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.37  E-value=2.7e-13  Score=91.58  Aligned_cols=56  Identities=21%  Similarity=0.487  Sum_probs=29.4

Q ss_pred             CCCCcccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCcccccc--CCccCCChHHHHHHHHhh
Q psy3485         209 TKEKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF--CNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       209 ~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~--C~k~F~~~~~L~~H~r~h  270 (304)
                      .+.++|.|.+  |++.|.....|..|++ .|     +++++|.|.+  |++.|.++..|.+|+++|
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTR-TH-----TGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHH-HH-----SSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHH-hc-----CCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3445555555  5555555555555555 44     5555555533  555555555555555443

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.1e-13  Score=83.58  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||+.|.++.+|++|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eq4_A            3 SGS-SG-----TGEKLYNCKECGKSFSRAPCLLKHERLHSGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CS-----SCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSS--CCCCCCC
T ss_pred             Ccc-cC-----CCCCCeECCCCCCccCchHHHHHHHHhcCCCC--CCCCCCC
Confidence            555 56     67777777777777777777777777777764  7777766

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=3.6e-13  Score=85.61  Aligned_cols=47  Identities=19%  Similarity=0.426  Sum_probs=27.7

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCC
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPT  259 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~  259 (304)
                      |+++++|.|.+|++.|.....|..|++..|     ++++||.|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H-----~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTS-----CCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhc-----CCCCCccCCCCCCCCCC
Confidence            455566666666666666666666654345     55666666666666654

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.37  E-value=1.9e-13  Score=83.74  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=35.9

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+|+++|.+++.|++|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ely_A            3 SGS-SG-----TGEKPFKCVECGKGFSRRSALNVHHKLHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CC-----CCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCS--SCSCCCC
T ss_pred             CCC-CC-----CCCCCcccCccCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            566 67     78888888888888888888888888888875  8888877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.5e-13  Score=83.19  Aligned_cols=45  Identities=13%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             HHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       231 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +|++ .|     ++++||.|++||++|.+++.|.+|+++|++++  +|.|++|
T Consensus         2 ~H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eov_A            2 SSGS-SG-----TGEKPYKCSDCGKSFTWKSRLRIHQKCHTGER--HSGPSSG   46 (46)
T ss_dssp             CCCC-CC-----SSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCS--SCCSCCC
T ss_pred             CCCC-CC-----CCCCCccCCccChhhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            3666 66     77788888888888888888888888887775  7888776

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=83.60  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+||+.|.++++|++|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emm_A            3 SGS-SG-----TGERPHKCNECGKSFIQSAHLIQHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCS-CS-----SCCCSEECSSSCCEESSHHHHHHHHHHHSCCC--TTSSSCC
T ss_pred             CcC-Cc-----CCCCCeeCCCCChhhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            556 56     77777777777777777777777777777775  7777776

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.4e-13  Score=83.36  Aligned_cols=44  Identities=14%  Similarity=0.188  Sum_probs=33.9

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||+.|.++++|.+|+++|++++  ||.|++|
T Consensus         3 h~~-~h-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2elz_A            3 SGS-SG-----SVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEK--TSGPSSG   46 (46)
T ss_dssp             CCS-CC-----CCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCC--CCCSCCC
T ss_pred             CCC-CC-----CCCCCeeCcccCchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            556 66     77788888888888888888888888887775  7888776

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2e-13  Score=83.62  Aligned_cols=44  Identities=14%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|++||++|.+++.|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eml_A            3 SGS-SG-----TGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK--PSGPSSG   46 (46)
T ss_dssp             CCC-CC-----SSCCSEECSSSCCEESSHHHHHHHHGGGSSCC--CSCSSCC
T ss_pred             ccC-Cc-----CCCCCeeCCCcCCccCCHHHHHHHHHHhcCCC--CCCCCCC
Confidence            556 56     77777777777777777777777777777775  7777766

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.1e-13  Score=83.63  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             HHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       231 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      .|++ .|     ++++||.|..||++|.+.++|..|+++|++++  +|.|++|
T Consensus         2 ~H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2eoo_A            2 SSGS-SG-----SGERPYGCNECGKNFGRHSHLIEHLKRHFREK--SSGPSSG   46 (46)
T ss_dssp             CCCC-CC-----SCCCCEECSSSCCEESSHHHHHHHHHHHHSTT--SSCCSCC
T ss_pred             CCCC-CC-----CCCCCEEccccCcccCCHHHHHHHHHHHcCCC--CCCCCCC
Confidence            3666 67     78888888888888888888888888888875  8888877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.1e-13  Score=83.50  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||++|.+++.|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eoe_A            3 SGS-SG-----TGEKPYKCNECGKVFTQNSHLANHQRIHTGVK--PSGPSSG   46 (46)
T ss_dssp             CSS-CC-----CCCCSSEETTTTEECSSHHHHHHHHGGGSCCC--SCSSCCC
T ss_pred             CCC-CC-----CCCCCeECCCcChhhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            555 56     77777777777777777777777777777775  7777776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.6e-13  Score=83.18  Aligned_cols=44  Identities=16%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+||++|.++++|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2eoq_A            3 SGS-SG-----TGEKPFKCDICGKSFCGRSRLNRHSMVHTAEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CS-----SSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCC--SSSCCCC
T ss_pred             CCC-CC-----CCCCCcCCCcCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            556 56     77777777777777777777777777777775  7777776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.2e-13  Score=83.45  Aligned_cols=39  Identities=15%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|.+|++.|.++.+|++|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2epz_A            8 TGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCC--CCSSCCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            67777777777777777777777777777764  7777766

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.1e-13  Score=83.54  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|..||+.|.++++|.+|+++|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytn_A            8 TGKKPYKCNECGKVFTQNSHLARHRGIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCC--CCSCCCC
T ss_pred             CCCcCeECCCCCCeeCCHHHHHHHhhhcCCCC--CCCCCCC
Confidence            67777777777777777777777777777764  7777766

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.2e-13  Score=83.49  Aligned_cols=45  Identities=11%  Similarity=0.159  Sum_probs=35.3

Q ss_pred             HHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       231 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +|++ .|     ++++||.|.+||++|.+++.|.+|+++|++++  +|.|++|
T Consensus         2 ~H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emp_A            2 SSGS-SG-----TGVKPYMCNECGKAFSVYSSLTTHQVIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCS-CS-----SCCCSEECSSSCCEESCHHHHHHHHHHHHCCS--CCSCCCC
T ss_pred             Cccc-cc-----CCCcCeECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            3666 66     77888888888888888888888888888875  7888877

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.2e-13  Score=83.46  Aligned_cols=44  Identities=14%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+||++|.+++.|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2emy_A            3 SGS-SG-----TGENPYECHECGKAFSRKYQLISHQRTHAGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CC-----CSSCCEECSSSCCEESSHHHHHHHHHHHTTSC--CSCSSCC
T ss_pred             CCC-CC-----CCCcCcCCCCCCcccCcHHHHHHHHHHcCCCC--CCCCCCC
Confidence            566 66     77777888888888888888888887777775  7887776

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.36  E-value=2.2e-13  Score=83.46  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|+.||+.|..+++|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em0_A            3 SGS-SG-----MGEKTWKCRECDMCFSQASSLRLHQNVHVGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CS-----CCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSS--CSCSSCC
T ss_pred             CcC-cc-----CCCcCeECCCCCcccCCHHHHHHHHHHcCCCC--CcCCCCC
Confidence            555 56     67777777777777777777777777777764  6777766

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.6e-13  Score=83.20  Aligned_cols=39  Identities=15%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+|+++|.+++.|++|+++|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytq_A            8 AGEKPYGCSECGKAFSSKSYLIIHMRTHSGEK--PSGPSSG   46 (46)
T ss_dssp             SCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSC--SSCCCCC
T ss_pred             CCCCCcCCCccChhhCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            67777777777777777777777777777764  7777766

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2e-13  Score=83.64  Aligned_cols=44  Identities=23%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|.....|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LH-----SGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHH-HC-----CSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            5666777777777777777777777777777 66     67777777766

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.5e-13  Score=83.23  Aligned_cols=44  Identities=11%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||+.|.++.+|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2eop_A            3 SGS-SG-----TGEKPHECRECGKSFSFNSQLIVHQRIHTGEN--PSGPSSG   46 (46)
T ss_dssp             CCC-SC-----CCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSC--CSCCCCC
T ss_pred             Ccc-cc-----CCCCCeeCCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            555 56     67777777777777777777777777777765  7777766

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.8e-13  Score=83.04  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+|++.|.+++.|++|+++|++++  +|.|++|
T Consensus         3 h~~-~h-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ytm_A            3 SGS-SG-----TGEKPYKCMECGKAFGDNSSCTQHQRLHTGQR--PSGPSSG   46 (46)
T ss_dssp             SCC-CC-----SSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCC--CCCCCCC
T ss_pred             CCc-CC-----CCCCCcCCCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            556 66     78888888888888888888888888888885  8888877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.4e-13  Score=83.47  Aligned_cols=44  Identities=30%  Similarity=0.425  Sum_probs=27.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-TH-----AEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHH-HH-----TSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            4455666666666666666666666666666 55     66666666655

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.9e-13  Score=83.77  Aligned_cols=44  Identities=18%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGG-GT-----SCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhh-hc-----CCCCCCCCCCC
Confidence            5556666666666666666666666666666 55     66666666665

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.1e-13  Score=83.60  Aligned_cols=39  Identities=18%  Similarity=0.325  Sum_probs=27.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..||++|.+++.|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ene_A            8 TGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSSSEECSSSCCEESSHHHHHHHHTTTCCCC--CCSCCCC
T ss_pred             CCCCCeECCCCCchhCChHHHHHHHhhcCCCC--CCCCCCC
Confidence            66677777777777777777777777776664  6777666

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.7e-13  Score=83.04  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     +++++|.|..||++|.++++|++|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2ytj_A            3 SGS-SG-----TGEKPYICAECGKAFTIRSNLIKHQKIHTKQK--PSGPSSG   46 (46)
T ss_dssp             SSC-TT-----SSCCSEECSSSCCEESSHHHHHHHHHHTSCCC--CSSCSCC
T ss_pred             ccc-CC-----CCCcCeECCCCChhhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            555 55     66777777777777777777777777777664  6777665

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.3e-13  Score=83.41  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||++|.++++|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2emh_A            3 SGS-SG-----TGERPYICTVCGKAFTDRSNLIKHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-SC-----SCCCSEECTTTCCEESSHHHHHHHHHHHHCSS--CSSSCCC
T ss_pred             CCC-CC-----CCCCCcCCCCCCchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            666 66     77888888888888888888888888888775  7888776

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=83.88  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VH-----VGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGG-GG-----SSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHH-Hc-----CCCCCcCCCCC
Confidence            5566666666777777777777777777766 56     66666766665

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.8e-13  Score=83.90  Aligned_cols=39  Identities=13%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..||++|.++.+|++|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2emf_A            8 TGGKHFECTECGKAFTRKSTLSMHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SSSCCEECSSSCCEESCHHHHHHHGGGTSCSS--CSCCCCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            55555555555555555555555555555553  5555554

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.8e-13  Score=83.87  Aligned_cols=44  Identities=23%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IH-----SGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHG-GG-----SSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHH-Hh-----cCCCCCCCCCC
Confidence            5566777777777777777777777777776 56     66777777665

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.36  E-value=2.6e-13  Score=83.17  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||+.|.+++.|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2ema_A            3 SGS-SG-----TGEKRYKCNECGKVFSRNSQLSQHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SCS-SC-----TTSCCEECSSSCCEESSHHHHHHHHTGGGCCC--CCSSSCC
T ss_pred             Ccc-CC-----CCCcCcCCCCCcchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            566 66     77777777777777777777777777777775  7777776

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.36  E-value=1.8e-13  Score=83.85  Aligned_cols=39  Identities=15%  Similarity=0.201  Sum_probs=22.3

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..||++|.+++.|.+|+++|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2el4_A            8 TGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVK--PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHGGGSSSCC--CSCCTTC
T ss_pred             CCCCceECCCCCchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            55555555555555555555555555555554  5555554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.1e-13  Score=83.57  Aligned_cols=44  Identities=27%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++|++.|.....|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHT-TT-----TTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            5566666777777777777777777777766 56     66677777665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.6e-13  Score=83.08  Aligned_cols=44  Identities=16%  Similarity=0.276  Sum_probs=31.2

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+||++|.+++.|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ytr_A            3 SGS-SG-----TGEKPYKCNECGKAFSQTSKLARHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SSC-CC-----SSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCS--CCCSCCC
T ss_pred             CCc-CC-----CCCcCcCCCCCCCccCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            555 56     67777777777777777777777777777765  7777766

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.9e-13  Score=82.92  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|.+|++.|.+++.|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ytd_A            3 SGS-SG-----SGEKPYKCSECGKAFHRHTHLNEHRRIHTGYR--PSGPSSG   46 (46)
T ss_dssp             CCC-CS-----CCCCSEECSSSCCEESSHHHHHHHHHHHTCCC--SSCSSCC
T ss_pred             Ccc-cc-----CCCcCeECCCCCCeeCChHHHHHHHHHcCCCC--CCCCCCC
Confidence            566 66     77777777777777777777777777777775  7777776

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.8e-13  Score=83.88  Aligned_cols=44  Identities=23%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHT-TT-----CCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHh-hc-----CCCCCCCCCCC
Confidence            5666777777777777777777777777777 56     67777777766

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.9e-13  Score=83.74  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|+|++||+.|.....|..|++ .|     ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGG-GT-----SCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            37889999999999999999999999999999 88     99999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.9e-13  Score=83.76  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IH-----TGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHG-GG-----SCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            5566666667777777777777777777766 56     66666776665

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.4e-13  Score=83.27  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IH-----TKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHH-HT-----SCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            5666777777777777777777777777777 66     67777777765

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.35  E-value=1.8e-13  Score=83.86  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=27.3

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHH-HH-----SSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 55     56666666655

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.9e-13  Score=82.91  Aligned_cols=44  Identities=14%  Similarity=0.292  Sum_probs=30.5

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..|+++|.++++|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2ep2_A            3 SGS-SG-----TGEKPYECSICGKSFTKKSQLHVHQQIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SSS-CS-----SCCCSEECSSSCCEESSHHHHHHHHHTTSSCC--SCCSCCC
T ss_pred             CCC-CC-----CCCcCcCCCCCCcccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            555 55     66777777777777777777777777777764  6777666

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.8e-13  Score=83.85  Aligned_cols=44  Identities=20%  Similarity=0.295  Sum_probs=28.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|..++.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHH-HH-----SCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            4556666666666666666666666666666 55     66666666655

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.2e-13  Score=83.46  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|..++.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VH-----TAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHH-HT-----TCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            5566666666666666666666666666666 56     66666666665

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.7e-13  Score=83.11  Aligned_cols=44  Identities=16%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     +++++|.|..||+.|.+++.|.+|+++|++++  ||.|++|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~c   46 (46)
T 2ytk_A            3 SGS-SG-----SGEKPYKCNECGKVFTQNSHLTNHWRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CS-----SSSCSEECSSSCCEESSHHHHHHHHHHHSSSS--CSSCCCC
T ss_pred             Ccc-cC-----CCCCCEeCCcCCCccCCHHHHHHHHHHHCCCC--CCCCCCC
Confidence            556 56     77777777777777777777777777777775  7777776

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.35  E-value=2.1e-13  Score=83.55  Aligned_cols=45  Identities=20%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SH-----TGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGG-GS-----SSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            47889999999999999999999999999999 88     99999999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.4e-13  Score=83.31  Aligned_cols=39  Identities=15%  Similarity=0.238  Sum_probs=26.3

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+|+++|.++++|++|+++|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEECGKGFICRRDLYTHHMVHTGEK--PSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESCHHHHHHHGGGGTTCC--CSSTTCC
T ss_pred             CCCcCccCCCccchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            66666666666666666666666666666664  6666665

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.1e-13  Score=83.61  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..|+++|.+++.|.+|+++|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~c   46 (46)
T 2eq0_A            8 TGEKPYKCHECGKVFRRNSHLARHQLIHTGEK--PSGPSSG   46 (46)
T ss_dssp             TCCCCEECTTTCCEESSHHHHHHHHTTTCCCC--CSCCSCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            55666666666666666666666666666654  6666655

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.1e-13  Score=83.56  Aligned_cols=44  Identities=25%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|.....|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGG-GG-----TTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            5556666666777777777776666777766 56     66666666665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.2e-13  Score=83.45  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|.+||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IH-----TGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHT-TT-----TTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            5566677777777777777777777777776 56     66677777665

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.4e-13  Score=83.31  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=42.6

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|+|++|++.|...+.|..|++ .|     ++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHT-TT-----CCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            47889999999999999999999999999999 78     99999999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.5e-13  Score=83.22  Aligned_cols=44  Identities=32%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-TH-----SGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHT-TT-----CCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            5566666777777777777777777777766 56     66667777665

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.5e-13  Score=83.24  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHH-TT-----SSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            5666777777777777777777777777777 66     67777777665

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.4e-13  Score=83.30  Aligned_cols=39  Identities=15%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+||+.|.+.++|.+|+++|++++  +|.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em5_A            8 SSTKSHQCHECGRGFTLKSHLNQHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCSCSEECSSSCCEESSHHHHHHHHTTTSCSC--CSSCCCC
T ss_pred             CCCCCeECCcCCCccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            66677777777777777777777777776664  6777666

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.2e-13  Score=82.70  Aligned_cols=39  Identities=21%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|++||+.|.+.+.|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2eme_A            8 SGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHGGGCCCS--CCSSCCC
T ss_pred             CCCCCeECCCCChhhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            66667777777777777777777777766664  6777666

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.2e-13  Score=83.46  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=28.5

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CH-----TGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHH-HH-----SCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            5556666666666666666666666666666 55     66666666665

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.4e-13  Score=83.27  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHT-TT-----TTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            5666777777777777777777777777777 56     67777777766

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.8e-13  Score=82.95  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHG-GG-----CCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            5666777777777777777777777777776 66     67777777766

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.34  E-value=2.9e-13  Score=82.92  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=27.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|.+||++|.+.+.|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em9_A            8 TGEKPYNCKECGKSFRWASCLLKHQRVHSGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHGGGGTSCC--CCSTTCC
T ss_pred             CCCcCeECCccccccCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            66677777777777777777777777776664  6777666

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.3e-13  Score=83.41  Aligned_cols=45  Identities=16%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             HHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       231 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +|++ .|     ++++||.|..||++|.++++|.+|+++|++++  ||.|++|
T Consensus         2 ~H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2yu8_A            2 SSGS-SG-----TGEKPYKCNECGKVFTQNSHLARHRRVHTGGK--PSGPSSG   46 (46)
T ss_dssp             CCCC-CC-----CCCSSEECSSSCCEESSSHHHHHHTHHHHSCC--CSCSCCC
T ss_pred             CcCc-CC-----CCCCCeECCcCCchhCCHHHHHHHHHhcCCCC--CCCCCCC
Confidence            3666 67     88888888888888888888888888888885  8888887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.3e-13  Score=82.67  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=26.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|.+|++.|.+++.|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2enc_A            8 SGEKPFKCEECGKGFYTNSQCYSHQRSHSGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHSCCSS--CCSSCCC
T ss_pred             CCCCCcCCCCCCCcCCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            66667777777777777777777777766664  6777666

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.2e-13  Score=83.54  Aligned_cols=44  Identities=18%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHT-TT-----SCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            5666777777777777777777777777776 56     67777777666

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.2e-13  Score=83.46  Aligned_cols=44  Identities=23%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VH-----MGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGG-GG-----GSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            4455666666666666666666666666666 55     56666666555

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.9e-13  Score=82.87  Aligned_cols=44  Identities=9%  Similarity=0.039  Sum_probs=32.4

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||++|.+++.|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2epw_A            3 SGS-SG-----TGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK--HSGPSSG   46 (46)
T ss_dssp             CCC-CC-----CCCCSEECSSSCCEESSSHHHHHHHHHCCSCC--CSCCCCC
T ss_pred             Ccc-cC-----CCCCCeeCCCCCCccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            556 56     77777777777777777777777777777775  7777776

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.5e-13  Score=82.60  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=35.4

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     +++++|.|.+|++.|.++..|.+|+++|++++  +|.|++|
T Consensus         3 h~~-~h-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2em8_A            3 SGS-SG-----SGEKPYKCVECGKGYKRRLDLDFHQRVHTGEK--LSGPSSG   46 (46)
T ss_dssp             CCC-CC-----CSCCSEECSSSCCEESSHHHHHHHHHHHHCCC--CCCSCCC
T ss_pred             CCC-CC-----CCCCCeECcccCchhCCHHHHHHHHHHHcCCC--CCCCCCC
Confidence            556 66     78888888888888888888888888888875  8888877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.5e-13  Score=82.57  Aligned_cols=44  Identities=11%  Similarity=0.028  Sum_probs=32.5

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     ++++||.|..||++|.+.+.|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2yso_A            3 SGS-SG-----SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK--NSGPSSG   46 (46)
T ss_dssp             CSC-CS-----SCCCCEECTTTCCEESSHHHHHHHHHHHSCCS--CCCTTCC
T ss_pred             ccc-cc-----CCCCCEEccccChhhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            555 66     77777777777777777777777777777775  7777776

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.34  E-value=2.5e-13  Score=83.23  Aligned_cols=44  Identities=25%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VH-----SGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGG-GG-----TSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            5566777777777777777777777777776 56     66677777665

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.8e-13  Score=82.99  Aligned_cols=44  Identities=30%  Similarity=0.426  Sum_probs=30.2

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SH-----SGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHH-HS-----CCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            4566677777777777777777777777766 56     66677777665

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.1e-13  Score=83.60  Aligned_cols=44  Identities=25%  Similarity=0.386  Sum_probs=27.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQR-TH-----AGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHH-HH-----TTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 45     56666666655

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.9e-13  Score=82.96  Aligned_cols=39  Identities=15%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+||++|.++++|.+|+++|++++  +|.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2en1_A            8 SGEKPFKCEECGKRFTQNSQLHSHQRVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGGSCCC--CSCCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            55666666666666666666666666666554  5666555

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.2e-13  Score=82.74  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     +++++|.|.+|++.|.+.++|.+|+++|++++  ||.|++|
T Consensus         3 h~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2en6_A            3 SGS-SG-----SGEKPYGCNECGKTFSQKSILSAHQRTHTGEK--PSGPSSG   46 (46)
T ss_dssp             CSC-CC-----CSSCCEEETTTTEEESSHHHHHHHHHHHSSCC--CSSSCCC
T ss_pred             CCC-cc-----CCCcCeECCCCCcccCchHHHHHHHHHcCCCC--CCCCCCC
Confidence            555 56     77777777777777777777777777777775  7777776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=83.27  Aligned_cols=39  Identities=15%  Similarity=0.065  Sum_probs=24.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..|+++|.+.+.|++|+++|++++  +|.|+.|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2en8_A            8 SGEKSHTCDECGKNFCYISALRIHQRVHMGEK--CSGPSSG   46 (46)
T ss_dssp             CCCSSEECTTTCCEESSHHHHHHHHTTTCCSC--SSCCSCC
T ss_pred             CCCCCeECCCcCcccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            56666666666666666666666666666664  6666655

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.1e-13  Score=82.79  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=42.8

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|+|++|++.|...+.|..|++ .|     ++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQR-VH-----MGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHT-TT-----CCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            47889999999999999999999999999999 88     99999999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.2e-13  Score=83.51  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=28.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHH-HH-----SSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHH-HH-----CCCCCCCCCCC
Confidence            5556666666666666666666666666666 55     66666666665

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.34  E-value=2.3e-13  Score=83.40  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=29.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHT-GG-----GCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            5566666666666666666666666666666 55     66666666665

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.4e-13  Score=83.29  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|.+|++.|...+.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IH-----TGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHH-HH-----TCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 55     66666666655

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.8e-13  Score=83.82  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=28.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHH-HH-----HCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            5556666666666666666666666666666 55     66666666665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.3e-13  Score=82.65  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGG-GG-----SCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            47889999999999999999999999999999 88     99999999988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=2.5e-13  Score=83.26  Aligned_cols=39  Identities=18%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|+.|+++|.+++.|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2ysp_A            8 TGEKPYKCEKCGKGYNSKFNLDMHQKVHTGER--PSGPSSG   46 (46)
T ss_dssp             SSCCSEEETTTTEEESCHHHHHHHHTTSCSCC--SSCCSCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHhhCCCC--CCCCCCC
Confidence            55566666666666666666666666665554  5666555

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.33  E-value=4.1e-13  Score=82.26  Aligned_cols=39  Identities=13%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+|++.|.++.+|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~C   46 (46)
T 2el6_A            8 AGVNPYKCSQCEKSFSGKLRLLVHQRMHTREK--PSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSS--CCSCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            66667777777777777777777777766664  6777665

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.8e-13  Score=83.02  Aligned_cols=45  Identities=29%  Similarity=0.380  Sum_probs=42.7

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|+|++|++.|...+.|..|++ .|     ++++||.|.+|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VH-----TGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHT-TS-----CSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHH-hh-----CCCCCCCCCCC
Confidence            37889999999999999999999999999999 88     99999999988

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.33  E-value=2.2e-14  Score=94.12  Aligned_cols=55  Identities=15%  Similarity=0.094  Sum_probs=38.2

Q ss_pred             HHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHH
Q psy3485         230 YAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFI  295 (304)
Q Consensus       230 ~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~  295 (304)
                      ..|++ .|     ++++||.|+.||++|.....|.   ++|++++  +|.|++||+.|....++..
T Consensus         3 ~~h~~-~H-----~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k--~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A            3 ETDER-DS-----TNRASFKCPVCSSTFTDLEANQ---LFDPMTG--TFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             CCCSS-SC-----CSSSEEECSSSCCEEEHHHHHH---HEETTTT--EEBCSSSCCBCEECTTCSC
T ss_pred             hhHHH-Hc-----CCCCCccCCCCCchhccHHHhH---hhcCCCC--CEECCCCCCccccCccccc
Confidence            34666 66     7777777777777777777665   6777765  7777777777777666543

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.8e-13  Score=83.84  Aligned_cols=44  Identities=16%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RH-----FREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHH-HH-----HSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHH-HH-----cCCCCCCCCCC
Confidence            5566666666666666666666666666666 55     66666666665

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.33  E-value=1.9e-13  Score=83.80  Aligned_cols=42  Identities=24%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             ccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccc
Q psy3485         178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMC  219 (304)
Q Consensus       178 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C  219 (304)
                      .+|.++++|.|++|++.|.++..|..|+++|+++++|+|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344444555555555555555555555545555555555444

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2e-13  Score=83.69  Aligned_cols=44  Identities=18%  Similarity=0.360  Sum_probs=29.0

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHH-HH-----HCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            5556666666666666666666666666666 55     66666666665

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.4e-13  Score=83.30  Aligned_cols=44  Identities=25%  Similarity=0.318  Sum_probs=27.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-TH-----VDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHH-HC-----CSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 55     66666666655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.33  E-value=3.9e-13  Score=82.38  Aligned_cols=44  Identities=18%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++|++.|.....|..|++ .|     ++++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MH-----TREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHG-GG-----CCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4556666666666666666666666666666 55     66666666665

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=3.2e-13  Score=82.72  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=28.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQV-LH-----MGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHH-HH-----SCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 55     66666666655

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.8e-13  Score=83.03  Aligned_cols=44  Identities=27%  Similarity=0.401  Sum_probs=27.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-TH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHH-HH-----SSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 45     56666666655

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.7e-13  Score=83.09  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=26.2

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|.+|++.|...+.|..|++ .|     ++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LH-----TGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHH-HH-----HSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4455666666666666666666666666665 45     55566666555

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4e-13  Score=82.29  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|..||++|.+++.|.+|+++|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~~~   46 (46)
T 2ep3_A            8 TGEKPYRCAECGKAFTDRSNLFTHQKIHTGEK--PSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSSCCEESSHHHHHHHHTTTTTSC--CCCTTCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            56666666666666666666666666666654  6666554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.4e-13  Score=83.33  Aligned_cols=44  Identities=11%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     +++++|.|++||++|.+++.|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytg_A            3 SGS-SG-----TGEKPFKCGECGKSYNQRVHLTQHQRVHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-CC-----SSCCSEECTTTCCEESSSHHHHTTGGGGSSCC--SSCSCCC
T ss_pred             CCC-CC-----CCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            555 56     77777777777777777777777777777775  7777776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.9e-13  Score=81.89  Aligned_cols=45  Identities=20%  Similarity=0.368  Sum_probs=42.4

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|.|.+||+.|..++.|..|++ .|     ++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHT-TT-----TTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            47889999999999999999999999999999 88     99999999976

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.9e-13  Score=82.23  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHH-hhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTK-YTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r-~h~~~~~~~~~C~~C  283 (304)
                      ++++||.|..||+.|..++.|.+|++ +|++++  ||.|++|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k--~~~C~~C   47 (47)
T 2epx_A            8 TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK--PSGPSSG   47 (47)
T ss_dssp             CCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSC--SSSCCCC
T ss_pred             CCCCCEECCccCchhCChHHHHHHhHhhcCCCC--CCCCCCC
Confidence            66777777777777777777777777 676664  6777666

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.31  E-value=1.3e-12  Score=79.58  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECI  284 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~  284 (304)
                      ++++||.|.+|++.|..++.|.+|+++|++++  +|.|++||
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~--~~~C~~cg   45 (45)
T 2epq_A            6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV--GKSGPSSG   45 (45)
T ss_dssp             SSCCSSEETTTTEECSCHHHHHHHHHHHSCCC--CCCCCCCC
T ss_pred             CCCCCCcCCCCCcccCCHHHHHHHHHHccCCC--CCCCcCCC
Confidence            78888888888888888888888888888885  88888886

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=7.6e-13  Score=81.36  Aligned_cols=46  Identities=20%  Similarity=0.261  Sum_probs=42.9

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      .|+++|+++++|.|.+||+.|...+.|..|++..|     ++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H-----~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH-----TGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTT-----TTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhc-----CCCCCCCCCCC
Confidence            37889999999999999999999999999998667     89999999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=1.9e-13  Score=83.80  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|..++.|..|++ .|     ++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VH-----TGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTH-HH-----HSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHH-hc-----CCCCCCCCCCC
Confidence            4444555555555555555555555555555 44     45555555544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.8e-13  Score=80.75  Aligned_cols=44  Identities=14%  Similarity=0.217  Sum_probs=32.3

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      |++ .|     +++++|.|..|++.|.++..|.+|+++|++++  +|.|++|
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~~   46 (46)
T 2em2_A            3 SGS-SG-----SGEKPFKCKECGKAFRQNIHLASHLRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             CCC-SC-----CCCCSEECSSSCCEESSHHHHHHHHHHHCCCC--SSCSSCC
T ss_pred             CCC-CC-----CCCCCEECCcCCchhCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            555 56     77777777777777777777777777777775  7777765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.2e-13  Score=83.51  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGG-GG-----SSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHH-Hc-----CCCCCCCCCCC
Confidence            4555556666666666666666666666655 55     55566666555

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.30  E-value=1e-12  Score=81.28  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIK  285 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k  285 (304)
                      +++++|.|.+|++.|.+...|.+|+++|++++  +|.|++|||
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEK--PYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSCSCC--CCCSCCCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCC--CccCCCCCC
Confidence            66777777777777777777777777777775  777777775

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.30  E-value=5e-14  Score=92.41  Aligned_cols=54  Identities=17%  Similarity=0.327  Sum_probs=44.7

Q ss_pred             HHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHH
Q psy3485         201 MAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAI  263 (304)
Q Consensus       201 l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L  263 (304)
                      |..|+++|++++||.|++||+.|.....|.   + .|     ++++||.|.+||+.|....++
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~-~H-----~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---L-FD-----PMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---H-EE-----TTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---h-hc-----CCCCCEECCCCCCccccCccc
Confidence            345778899999999999999999888876   5 78     888999999999999876654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.8e-13  Score=82.44  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|+|++|++.|.....|..|++ .|     ++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VH-----TGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHH-HH-----HCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHH-HH-----cCCCCCCCCCC
Confidence            3445555555555555555555555555555 44     55555555554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=7.3e-13  Score=81.12  Aligned_cols=44  Identities=25%  Similarity=0.414  Sum_probs=26.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHH-HH-----CCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            4555666666666666666666666666666 55     56666666543

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.7e-12  Score=79.44  Aligned_cols=39  Identities=15%  Similarity=0.325  Sum_probs=33.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+|++.|.++++|.+|+++|++++  +|.|++|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ytt_A            8 EGEKPYQCSECGKSFSGSYRLTQHWITHTREK--PSGPSSG   46 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCC--CCSCCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCC--CCCCCCC
Confidence            78888888888888888888888888888886  8888887

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.26  E-value=1.3e-12  Score=78.23  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|.+||++|.+++.|.+|+++|++++  +|.|+
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   42 (42)
T 2el5_A            6 SGENPYECSECGKAFNRKDQLISHQRTHAGES--GPSSG   42 (42)
T ss_dssp             SSCCSEECSSSCCEESSHHHHHHHHGGGCCCC--SCCCC
T ss_pred             CCCCCccCCCcChhhCCHHHHHHHHHhcCCCC--CCCCC
Confidence            56666666666666666666666666666654  66653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.26  E-value=1.7e-12  Score=77.72  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|++||+.|...+.|..|++ .|     ++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQR-TH-----AGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHG-GG-----CCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHH-hc-----CCCCCCCCC
Confidence            6788999999999999999999999999999 78     999999995

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=79.53  Aligned_cols=39  Identities=15%  Similarity=0.318  Sum_probs=27.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.+|++.|.+...|++|+++|++++  +|.|++|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   46 (46)
T 2ep0_A            8 TGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEK--PSGPSSG   46 (46)
T ss_dssp             TTCCSEECSSSCCEESSHHHHHHHHTTTSSSC--CCSCCCC
T ss_pred             CCCCCeeCcccCcccCChHHHHHHHHHhCCCC--CCCCCCC
Confidence            66777777777777777777777777777664  6777666

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.25  E-value=2.1e-12  Score=78.99  Aligned_cols=43  Identities=14%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |++ .|     ++++||.|..|++.|.++..|++|+++|++++  ||.|++
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2emj_A            3 SGS-SG-----TGEKPFECAECGKSFSISSQLATHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCC-CC-----CCCCSEECSSSSCEESSHHHHHHHHHHHTTSC--SSSSCC
T ss_pred             CCC-CC-----CCCCCEECCCCCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            555 56     67777777777777777777777777777765  777753

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=4.2e-12  Score=77.25  Aligned_cols=42  Identities=14%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccch
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCN  220 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~  220 (304)
                      .|.++++|.|++|++.|..+..|..|+++|+++++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            344444444444444444444444444444444444444443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.25  E-value=8.1e-13  Score=83.94  Aligned_cols=50  Identities=10%  Similarity=0.129  Sum_probs=28.6

Q ss_pred             ccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcc
Q psy3485         193 YYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRY  248 (304)
Q Consensus       193 k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~  248 (304)
                      +.|.....|..|+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLE-LR-----HFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHH-HH-----TTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHH-Hh-----ccCCCC
Confidence            445555555555555555555555555555555555555555 44     555554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.3e-12  Score=78.80  Aligned_cols=42  Identities=17%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      |++ .|     ++++||.|..|++.|.+.+.|++|+++|++++  ||.|+
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2em4_A            3 SGS-SG-----TGQRPYECIECGKAFKTKSSLICHRRSHTGEK--PSGPS   44 (46)
T ss_dssp             SCC-CC-----CCSSSEECSSSCCEESSHHHHHHHHHHHSSSS--CCCCC
T ss_pred             Ccc-cc-----CCCcCcCCCCCCCccCCHHHHHHHHHhcCCCC--CCCCC
Confidence            555 56     67777777777777777777777777777775  77775

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.5e-12  Score=78.67  Aligned_cols=38  Identities=18%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      +++++|.|..|++.|.+++.|.+|+++|++++  ||.|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2enf_A            8 TGEKPYKCNECGKVFTQNSHLVRHRGIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSS--CCCCSC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHhhCCCC--CCCCCC
Confidence            66777777777777777777777777777664  677653

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=3.9e-12  Score=78.62  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNF  255 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k  255 (304)
                      |.++++|.|.+|++.|.....|..|++ .|     ++++||.|.+|+|
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKL-SH-----SGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGG-GS-----CSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHH-hc-----CCCCCccCCCCCC
Confidence            445555555555555555555555555 45     5555555555553

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=78.61  Aligned_cols=43  Identities=16%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |++ .|     ++++||.|.+|++.|.+++.|.+|+++|++++  ||.|++
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~~   45 (46)
T 2em3_A            3 SGS-SG-----TGEKPYECKVCSKAFTQKAHLAQHQKTHTGEK--PSGPSS   45 (46)
T ss_dssp             CCC-CC-----SSCCSEECSSSCCEESSHHHHHHHHHHHCCCC--CCCSCC
T ss_pred             CCC-CC-----CCCcCeECCCCCcccCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            555 56     67777777777777777777777777777765  777753

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.6e-12  Score=78.57  Aligned_cols=43  Identities=14%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |++ .|     ++++||.|..|++.|.+++.|.+|+++|++++  ||.|++
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2eow_A            3 SGS-SG-----TGEKPYKCNECGKAFRARSSLAIHQATHSGEK--PSGPSS   45 (46)
T ss_dssp             CCC-CS-----CCCCCEECTTSCCEESSHHHHHHHHHHHCCCS--CSCTTC
T ss_pred             ccC-CC-----CCCCCeeccccCChhcCHHHHHHHHHHcCCCC--CCCCCC
Confidence            555 56     67777777777777777777777777777764  777753

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=79.11  Aligned_cols=42  Identities=21%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|++|++.|...+.|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHT-TT-----TTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHH-hh-----CCCCCCCCC
Confidence            5566666667777777777777777777766 56     666666665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.2e-12  Score=78.16  Aligned_cols=43  Identities=14%  Similarity=0.263  Sum_probs=29.9

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |++ .|     +++++|.|..|++.|.++++|.+|+++|++++  ||.|++
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2ep1_A            3 SGS-SG-----TGEKPYECSDCGKSFIKKSQLHVHQRIHTGEN--PSGPSS   45 (46)
T ss_dssp             CCC-CC-----SSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSC--CCSSSC
T ss_pred             ccc-CC-----CCCCCcCCCCCCchhCCHHHHHHHHHHhCCCC--CCCCCC
Confidence            555 56     67777777777777777777777777777764  777753

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.24  E-value=1.6e-12  Score=79.52  Aligned_cols=42  Identities=26%  Similarity=0.393  Sum_probs=27.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQR-IH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHH-HH-----TTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            5556666666666666666666666666666 55     666666665

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.8e-12  Score=78.40  Aligned_cols=43  Identities=14%  Similarity=0.262  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |++ .|     +++++|.|..|++.|.+++.|++|+++|++++  ||.|++
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--p~~C~~   45 (46)
T 2eor_A            3 SGS-SG-----TGEKPYNCEECGKAFIHDSQLQEHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             SSS-SS-----SCCCSEECTTTCCEESSHHHHHHHHHHHHSCC--CSSSTT
T ss_pred             CCc-Cc-----CCCcCccCCCCCCCcCCHHHHHHHHHhcCCCC--CCCCCC
Confidence            666 66     77788888888888888888888888888775  787764

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=79.09  Aligned_cols=37  Identities=16%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|++.|.++..|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eq2_A            8 TGGKPYQCNECGKAFSQTSKLARHQRVHTGEK--PSGPS   44 (46)
T ss_dssp             SSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCC--CCCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCC
Confidence            55555555555555555555555555555553  55554

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.3e-12  Score=77.14  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=22.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..|+++|.+++.|.+|+++|++++  +|.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   41 (42)
T 2yte_A            6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKS--GPSS   41 (42)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCS--SCCC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhCCCC--CCCC
Confidence            56666666666666666666666666666654  5655

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=78.72  Aligned_cols=37  Identities=16%  Similarity=0.324  Sum_probs=25.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|.+|++.|.++..|++|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eon_A            8 TGEKPYKCQVCGKAFRVSSHLVQHHSVHSGER--PSGPS   44 (46)
T ss_dssp             SSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCC--SCTTS
T ss_pred             CCCcccCCCCCCcccCcHHHHHHHHHhcCCCC--CCCCC
Confidence            66666777667777777777777766666664  66665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3e-12  Score=78.32  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|++.|.++..|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (46)
T 2emg_A            8 TGENPFICSECGKVFTHKTNLIIHQKIHTGER--PSGPS   44 (46)
T ss_dssp             CSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCC--CSCSC
T ss_pred             CCCCCEECCccCcccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            66677777777777777777777777776664  67665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.4e-12  Score=78.74  Aligned_cols=37  Identities=19%  Similarity=0.360  Sum_probs=24.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|..|++.|.+++.|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2ytp_A            8 TGERHYECSECGKAFARKSTLIMHQRIHTGEK--PSGPS   44 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSCCC--CCSSC
T ss_pred             CCCCCeECCcCCcccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            66666666666666666666666666666664  66665

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.8e-12  Score=78.43  Aligned_cols=37  Identities=19%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|++.|.+++.|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2yti_A            8 TGEKPYKCNECGKVFTQNSHLARHRGIHTGEK--PSGPS   44 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSC--CSSTT
T ss_pred             CCCcCeECCCCCcccCChhHHHHHhHhcCCCC--CCCCC
Confidence            66777777777777777777777777777664  67665

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=77.87  Aligned_cols=43  Identities=12%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |++ .|     +++++|.|..|++.|.+++.|.+|+++|++++  +|.|++
T Consensus         3 h~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2en9_A            3 SGS-SG-----AGKKLFKCNECKKTFTQSSSLTVHQRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCS-SC-----CSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSC--CCSCCC
T ss_pred             CCC-CC-----CCCCCEECCccCcccCCHHHHHHHHHHcCCCC--CCCCCC
Confidence            555 56     77777777777777777777777777777775  777763

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=79.11  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|...+.|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHT-TT-----SCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            5566777777777777777777777777776 56     667777765

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.3e-12  Score=78.81  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|++.|.++++|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2ytf_A            8 TGEKPFECSECQKAFNTKSNLIVHQRTHTGEK--PSGPS   44 (46)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHTSCSSS--SSCCC
T ss_pred             CCCCCcCCCCCCcccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            55555666666666666666666655555554  55554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.8e-12  Score=79.37  Aligned_cols=42  Identities=21%  Similarity=0.406  Sum_probs=27.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|...+.|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR-SH-----TGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHH-HH-----SSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHH-hc-----CCCCCCCCC
Confidence            5556666666666666666666666666666 55     666666665

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.1e-12  Score=79.02  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      ++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IH-----TGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHT-TT-----SSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            34555555555555555555555555555 45     55555555554

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3e-12  Score=78.26  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=24.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|.+|++.|.+++.|.+|+++|++++  +|.|+
T Consensus         8 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2emi_A            8 TGERHYECSECGKAFIQKSTLSMHQRIHRGEK--PSGPS   44 (46)
T ss_dssp             SSCCCEECSSSCCEESSHHHHHHHHGGGCSCC--CCSCC
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHhHhCCCC--CCCCC
Confidence            66666666666666666666666666666664  66665

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2e-12  Score=79.10  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=28.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA-TH-----SGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHH-HH-----CCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHH-Hc-----CCCCCCCCC
Confidence            5566666666666666666666666666666 55     666666665

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.9e-12  Score=77.77  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=23.5

Q ss_pred             ccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccccc
Q psy3485         178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMC  219 (304)
Q Consensus       178 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C  219 (304)
                      .+|.++++|.|++|++.|.+...|..|+++|+++++|.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            445555555555555555555555555555555555555554

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.2e-12  Score=78.93  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHT-TT-----SCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhH-hc-----CCCCCCCCC
Confidence            5556666666666666666666666666666 56     666666665

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.9e-12  Score=78.32  Aligned_cols=44  Identities=30%  Similarity=0.409  Sum_probs=41.2

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      .|+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-TH-----TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHH-TS-----CSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHH-Hh-----CCCCCCCCCC
Confidence            47889999999999999999999999999999 88     9999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.2e-12  Score=78.89  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|+++|.+++.|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--p~~C~   44 (46)
T 2yts_A            8 TGEKPYICNECGKSFIQKSHLNRHRRIHTGEK--PSGPS   44 (46)
T ss_dssp             CSCCSEECSSSCCEESSHHHHHHHGGGTSSCC--SSCCC
T ss_pred             CCCcCEECCCCChhhCChHHHHHHHHhcCCCC--CcCCC
Confidence            55555555555555555555555555555553  55554

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.4e-12  Score=78.77  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IH-----RGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHG-GG-----CSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHh-Hh-----CCCCCCCCC
Confidence            5666777777777777777777777777777 56     677777775

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.1e-12  Score=75.98  Aligned_cols=42  Identities=17%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|++|++.|...+.|..|++ .|     ++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQK-MH-----TVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHH-HT-----SCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            6788999999999999999999999999999 78     999999984

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.4e-12  Score=78.73  Aligned_cols=42  Identities=26%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IH-----TGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHT-TT-----SCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            5556666666666666666666666666666 56     666666665

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.7e-12  Score=77.91  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|.+|++.|..++.|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eoh_A            8 SGKKPYECKECRKTFIQIGHLNQHKRVHTGER--SSGPS   44 (46)
T ss_dssp             CCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCC--SCSTT
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            67777777777777777777777777777764  77775

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.4e-12  Score=78.67  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IH-----TGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHG-GG-----SSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            5556666666666666666666666666666 55     666666665

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.1e-12  Score=78.21  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      .|+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VH-----TGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGG-GG-----CCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHH-Hc-----CCCCCCCCCC
Confidence            47889999999999999999999999999999 88     9999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.6e-12  Score=77.93  Aligned_cols=37  Identities=16%  Similarity=0.329  Sum_probs=25.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|..|++.|.++..|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2em6_A            8 MGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEK--PSGPS   44 (46)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSC--CCCTT
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCC--CCCCC
Confidence            66677777777777777777777777776664  67665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.1e-12  Score=78.98  Aligned_cols=42  Identities=26%  Similarity=0.459  Sum_probs=27.2

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-TH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHH-HH-----CCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            5556666666666666666666666666666 55     666666665

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.6e-12  Score=77.97  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|..|++.|.+++.|.+|+++|++++  ||.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2yth_A            8 SGEKPFQCEECGKRFTQNSHLHSHQRVHTGEK--PSGPS   44 (46)
T ss_dssp             CCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCC--CSSCC
T ss_pred             CCCcCCCCCCCCcccCCHHHHHHHHHhcCCCC--CCCCC
Confidence            66677777777777777777777777776664  66665

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.5e-12  Score=78.67  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|++.|.++..|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eq1_A            8 TGEKPYKCNECGKAFRAHSNLTTHQVIHTGEK--PSGPS   44 (46)
T ss_dssp             CCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSC--CSSCC
T ss_pred             CCCCCeECCcCChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            55566666666666666666666666665554  56554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.5e-12  Score=78.67  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VH-----TGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHT-TT-----SSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHH-Hc-----CCCCCCCCC
Confidence            5556666666666666666666666666666 56     666666665

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.7e-12  Score=78.52  Aligned_cols=42  Identities=29%  Similarity=0.472  Sum_probs=27.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VH-----TGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGG-GG-----TTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHH-hc-----CCCCCCCCC
Confidence            5556666666666666666666666666666 55     666666665

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.5e-12  Score=78.72  Aligned_cols=42  Identities=26%  Similarity=0.389  Sum_probs=28.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VH-----SGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTT-TT-----TSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHH-hc-----CCCCCCCCC
Confidence            4556666677777777777777777777766 56     666666665

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.9e-12  Score=78.30  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=41.2

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      .|+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IH-----TGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGG-GT-----SSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHH-hc-----CCCCCcCCCC
Confidence            47889999999999999999999999999999 88     9999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.5e-12  Score=78.01  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=41.2

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      .|+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IH-----TGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHT-TT-----CCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHH-Hh-----CCCCCCCCCC
Confidence            47889999999999999999999999999999 88     9999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.2e-12  Score=78.11  Aligned_cols=37  Identities=16%  Similarity=0.374  Sum_probs=25.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|+++|..+..|++|+++|++++  ||.|+
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2yrj_A            8 TGEKPYRCGECGKAFAQKANLTQHQRIHTGEK--PSGPS   44 (46)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSSCC--SSCSC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCC--CCCCC
Confidence            66677777777777777777777777776664  67665

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.3e-12  Score=77.95  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=22.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|.+||++|.+++.|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2eoj_A            8 TGENPYECCECGKVFSRKDQLVSHQKTHSGQS--GPSSG   44 (44)
T ss_dssp             SSCCSCEETTTTEECSSHHHHHHHHTTSSSSC--SCCCC
T ss_pred             CCCcCeeCCCCCCccCCHHHHHHHHHHcCCCC--CCCCC
Confidence            56666666666666666666666666666654  56553

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.7e-12  Score=77.65  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=22.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..||+.|.++..|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2en7_A            8 TGMKPYVCNECGKAFRSKSYLIIHTRTHTGES--GPSSG   44 (44)
T ss_dssp             SSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSS--SSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHhhhcCCCC--CCCCC
Confidence            56666666666666666666666666666654  56653

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.6e-12  Score=77.97  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      |++ .|     ++++||.|.+|++.|..+..|.+|+++|++++  +|.|+
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (46)
T 2eoz_A            3 SGS-SG-----TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET--LSGPS   44 (46)
T ss_dssp             SCC-CC-----SSCCSEEETTTTEEESSHHHHHHHHHHHSSCC--SSSCC
T ss_pred             ccc-cC-----CCCCCeECcccChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            555 56     67777777777777777777777777777765  77775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.1e-12  Score=77.34  Aligned_cols=37  Identities=16%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|..|+++|.+.++|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2eof_A            8 TGEKPYECNECQKAFNTKSNLMVHQRTHTGES--GPSSG   44 (44)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHTTTSS--CSCCC
T ss_pred             CCCCCeECCCCCcccCCHhHHHHHHHHhCCCC--CCCCC
Confidence            56666666666666666666666666666654  56653

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4e-12  Score=76.86  Aligned_cols=43  Identities=28%  Similarity=0.432  Sum_probs=40.4

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      .|+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR-TH-----TGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHH-HT-----TTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHH-Hh-----CCCCCCCCC
Confidence            47889999999999999999999999999999 78     999999995

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.1e-12  Score=78.27  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VH-----TGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHH-HC-----SSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            4556666666666666666666666666666 56     666666664

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.8e-12  Score=76.97  Aligned_cols=43  Identities=28%  Similarity=0.368  Sum_probs=40.4

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      .|+++|+++++|.|.+||+.|.....|..|++ .|     ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-TH-----TGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHT-TT-----CCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhh-hc-----CCCCCCCCC
Confidence            47889999999999999999999999999999 88     999999995

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.8e-12  Score=78.39  Aligned_cols=42  Identities=29%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IH-----TGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHT-TT-----SSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHH-Hc-----CCCCCCCCC
Confidence            5566666677777777777777777777766 56     666677665

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3.1e-12  Score=77.40  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=40.3

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      .|+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQK-TH-----SGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHT-TS-----SSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHH-Hc-----CCCCCCCCC
Confidence            37889999999999999999999999999999 88     999999995

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=78.34  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=24.5

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IH-----TGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHH-HH-----TSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHH-Hc-----CCCCCCCCC
Confidence            4455555666666666666666666666655 45     555566554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.21  E-value=9.7e-13  Score=83.56  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             hhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCc
Q psy3485         221 YRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPT  278 (304)
Q Consensus       221 k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~  278 (304)
                      |.|.....|..|++ .|     +++++|.|..||+.|...+.|..|+++|++++  ||
T Consensus         4 k~~~~~~~l~~h~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--p~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRS-RS-----QSEQPATCPICYAVIRQSRNLRRHLELRHFAK--PG   53 (54)
T ss_dssp             CCCSCSSCCCCCHH-HH-----TSSCCEECTTTCCEESSHHHHHHHHHHHTTTS--CC
T ss_pred             cccCCCcchhhHHH-hc-----CCCCCccCCCCCcccCCHHHHHHHHHHhccCC--CC
Confidence            56777777778888 67     78888888888888888888888888888875  65

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.1e-12  Score=78.24  Aligned_cols=38  Identities=13%  Similarity=0.239  Sum_probs=26.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcC-CCCCCcccCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHM-NTSGPTIQPE  282 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~-~~~~~~~C~~  282 (304)
                      ++++||.|..|+++|.+.+.|.+|+++|++ ++  +|.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~--~~~C~~   46 (46)
T 2eoy_A            8 QKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK--SGPSSG   46 (46)
T ss_dssp             CCSCCEECSSSCCEESSSHHHHHHHTTCCSCCT--TSSSCC
T ss_pred             CCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCC--CCCCCC
Confidence            677777777777777777777777777776 64  677753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.6e-12  Score=77.47  Aligned_cols=42  Identities=12%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      |++ .|     ++++||.|.+|++.|.+++.|.+|+++|++++  +|.|+
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2yto_A            3 SGS-SG-----TGEKPYKCSDCGKAFTRKSGLHIHQQSHTGER--HSGPS   44 (46)
T ss_dssp             CCC-CC-----CSCCCEECSSSCCEESSHHHHHHHHHHHTCCC--BTTTB
T ss_pred             ccc-cc-----CCCCCEECcccCCccCCHhHHHHHHHHcCCCC--CCCCC
Confidence            555 56     67777777777777777777777777777764  77765

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=78.80  Aligned_cols=42  Identities=26%  Similarity=0.401  Sum_probs=27.3

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IH-----TGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHH-HH-----HSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHH-hc-----CCCCCCCCC
Confidence            5556666666666666666666666666666 55     666666665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.5e-12  Score=77.49  Aligned_cols=42  Identities=14%  Similarity=0.189  Sum_probs=33.9

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      |++ .|     ++++||.|.+|++.|.+.++|.+|+++|++++  +|.|+
T Consensus         3 h~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2emz_A            3 SGS-SG-----SGERPFKCNECGKGFGRRSHLAGHLRLHSREK--SSGPS   44 (46)
T ss_dssp             CCS-CS-----SCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTT--CCCSC
T ss_pred             CCc-CC-----CCCCCeECCCCCcccCCHHHHHHHHHHhCCCC--CCCCC
Confidence            666 67     78888888888888888888888888888875  88886

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.2e-12  Score=78.17  Aligned_cols=42  Identities=26%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SH-----TGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHH-HH-----TCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHH-Hc-----CCCCCCCCC
Confidence            5566666666777777777777777777766 55     666666665

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=3.4e-12  Score=76.40  Aligned_cols=36  Identities=17%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..|+++|.+.+.|.+|+++|++++  ||.|
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   42 (42)
T 2eos_A            7 GGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG--PSSG   42 (42)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCS--STTC
T ss_pred             CCCCCEECCCCCCccCCHHHHHHHHHhcCCCC--CCCC
Confidence            55555555555555555555555555555553  5554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.1e-12  Score=78.22  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|++|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VH-----TQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHH-HH-----SSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            5566666666666666666666666666666 55     666666665

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=2.7e-12  Score=78.55  Aligned_cols=42  Identities=21%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCC-CCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSE-ERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~-~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++ ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHER-IH-----TRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHT-TC-----CSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHH-Hc-----CCCCCCCCCC
Confidence            4555666666666666666666666666666 55     56 6666664

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=4.1e-12  Score=76.86  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..||+.|.+.+.|..|+++|++++  +|.|
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   43 (44)
T 2emb_A            8 HTRKRYECSKCQATFNLRKHLIQHQKTHAAKS--GPSS   43 (44)
T ss_dssp             CCCSSEECTTTCCEESCHHHHHHHGGGGCCCC--CTTC
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCC--CcCC
Confidence            55555555555555555555555555555553  5555

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=4.9e-12  Score=76.53  Aligned_cols=42  Identities=10%  Similarity=0.173  Sum_probs=29.7

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      |++ .|     ++++||.|..|+++|.....|.+|+++|++++  +|.|+
T Consensus         3 H~~-~H-----~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C~   44 (44)
T 2yu5_A            3 SGS-SG-----AGENPFKCSKCDRVFTQRNYLVQHERTHARKS--GPSSG   44 (44)
T ss_dssp             CSC-CC-----SCCCSEECSSSSCEESSSHHHHHHHHHCCCCC--SSCCC
T ss_pred             Ccc-cc-----CCCCCeECCCCCchhCCHHHHHHHhHhcCCCC--CCCCC
Confidence            555 56     67777777777777777777777777777765  77764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.9e-12  Score=76.69  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..||++|.+.+.|.+|+++|++++  ||.|
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   42 (42)
T 2ytb_A            7 GGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG--PSSG   42 (42)
T ss_dssp             CSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCS--CCCC
T ss_pred             CCCCCeeCCCccchhCCHHHHHHHHHHhCCCC--CCCC
Confidence            55555555555555555555555555555553  5544

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.19  E-value=4.3e-12  Score=75.91  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..||++|.++++|+.|+++|++++  ||.|
T Consensus         7 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k--~~~C   42 (42)
T 2epc_A            7 GGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG--PSSG   42 (42)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTTCCC--CCCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHhhhcCCCC--CCCC
Confidence            55566666666666666666666666665554  5555

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.1e-12  Score=77.24  Aligned_cols=37  Identities=16%  Similarity=0.406  Sum_probs=26.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|.+|++.|.++..|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2enh_A            8 TGEKPYECDVCRKAFSHHASLTQHQRVHSGEK--PSGPS   44 (46)
T ss_dssp             CCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSC--CCCCC
T ss_pred             CCCCCcCCCCcCchhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            66777777777777777777777777777664  67765

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.4e-12  Score=77.48  Aligned_cols=37  Identities=16%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      ++++||.|..|++.|...+.|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (46)
T 2eq3_A            8 TGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK--PSGPS   44 (46)
T ss_dssp             CCCCSSEETTTTEECSSHHHHHHHHTTSCCCC--CCCSC
T ss_pred             CCCCCeECCCCChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            55555555555555555555555555555553  55554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=3.8e-12  Score=77.00  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|++++||+|.+|++.|.....|..|++ .|     ++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER-TH-----ARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHH-HC-----CCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhH-hc-----CCCCCCCC
Confidence            4555666666666666666666666666666 55     56666665

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=5.7e-12  Score=76.23  Aligned_cols=43  Identities=14%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      .|+++|+++++|.|.+||+.|...+.|..|++ .|     ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQK-TH-----AAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGG-GG-----CCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHH-Hc-----CCCCCcCCC
Confidence            47889999999999999999999999999999 88     999999995

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=5.6e-12  Score=77.02  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=41.1

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      .|+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IH-----TGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHT-TS-----CCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHH-Hh-----CCCCCCCCCC
Confidence            47889999999999999999999999999999 88     9999999973

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.18  E-value=7.1e-12  Score=74.93  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~-~H-----~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR-SC-----SQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHH-HT-----TCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhh-hc-----CCCCCCCC
Confidence            5778999999999999999999999999999 88     99999998

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8.8e-12  Score=75.40  Aligned_cols=37  Identities=8%  Similarity=0.062  Sum_probs=27.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|.+|++.|.+.+.|.+|+++|++++  +|.|+
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~   44 (44)
T 2eou_A            8 AAKTTSECQECGKIFRHSSLLIEHQALHAGES--GPSSG   44 (44)
T ss_dssp             SSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSC--CCCCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHHCCCC--CCCCC
Confidence            77777777777777777777777777777775  77774

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=5.4e-12  Score=75.49  Aligned_cols=41  Identities=24%  Similarity=0.464  Sum_probs=38.7

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IH-----TGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTT-TT-----SCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHH-hc-----CCCCCCCC
Confidence            6788999999999999999999999999999 88     99999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.4e-12  Score=75.48  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..|+++|.+.+.|.+|+++|++++  ||.|
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~C   42 (42)
T 2en2_A            7 GGEKPYKCETCGARFVQVAHLRAHVLIHTGSG--PSSG   42 (42)
T ss_dssp             CSSCSEECTTTCCEESSHHHHHHHTHHHHSCC--SSCC
T ss_pred             CCCCCEeCCCcChhhCCHHHHHHHHHHcCCCC--CCCC
Confidence            77777777777777777777777777777775  7766

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.7e-12  Score=77.43  Aligned_cols=42  Identities=26%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|..+..|..|++ .|     ++++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VH-----SGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGG-GS-----CCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            3445555555555555555555555555555 45     555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=5.5e-12  Score=77.09  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=35.0

Q ss_pred             HHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         231 AHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       231 ~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +|++ .|     ++++||.|.+|++.|.+...|.+|+++|++++  +|.|+
T Consensus         2 ~H~~-~H-----~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C~   44 (46)
T 2en3_A            2 SSGS-SG-----TGEKPFQCKECGMNFSWSCSLFKHLRSHERTD--PSGPS   44 (46)
T ss_dssp             CCCC-CS-----CCCCSEECSSSCCEESSSHHHHHHHHHHHHSC--CSSCS
T ss_pred             cccc-cc-----CCCCCeeCcccChhhCCHHHHHHHHHHhCCCC--CCCCC
Confidence            3666 67     88888888888888888888888888888885  88885

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.9e-12  Score=76.67  Aligned_cols=41  Identities=24%  Similarity=0.388  Sum_probs=25.0

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IH-----TGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTH-HH-----HSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHH-Hc-----CCCCCCCC
Confidence            4455666666666666666666666666666 55     56666655

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.7e-12  Score=75.73  Aligned_cols=41  Identities=22%  Similarity=0.425  Sum_probs=38.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|+++++|.|++||+.|...+.|..|++ .|     ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VH-----TGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGG-GT-----SCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHH-Hh-----CCCCCCCC
Confidence            7788999999999999999999999999999 88     99999988

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=75.32  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=29.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      +++++|.|.+|++.|.++.+|++|+++|++++  ||.|++
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~~   45 (46)
T 2eom_A            8 HGERGHRCSDCGKFFLQASNFIQHRRIHTGEK--PSGPSS   45 (46)
T ss_dssp             CCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCC--CSSCCC
T ss_pred             CCCCCcCCCCCCCeeCChHHHHHHHHHhCCCC--CCCCCC
Confidence            77788888888888888888888888887775  787753

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=7.1e-12  Score=75.81  Aligned_cols=41  Identities=12%  Similarity=0.143  Sum_probs=23.5

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQA-LH-----AGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHH-HH-----TTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHH-HH-----CCCCCCCC
Confidence            3445555555666666666666556666655 45     55555555

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4e-12  Score=77.76  Aligned_cols=42  Identities=24%  Similarity=0.447  Sum_probs=25.1

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|+|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LH-----SREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHH-HH-----HHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            4555666666666666666666666666666 45     555666654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.7e-11  Score=72.81  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      +++++|.|..|++.|.+++.|.+|+++|++++  +|.|++
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNECDCRFSEEASLKRHTLQTHSDK--SGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTT--CSSSCC
T ss_pred             CCCCCEECCCCCCeeCChHHHHHHHHhhCCCC--CccCCC
Confidence            77788888888888888888888888888775  788764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.5e-11  Score=73.44  Aligned_cols=40  Identities=28%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             ccCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccc
Q psy3485         178 RKNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACE  217 (304)
Q Consensus       178 ~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~  217 (304)
                      .+|.++++|.|++|++.|.+...|..|+++|++++||+|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            4455555555555555555555555555555555555554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3.9e-11  Score=72.13  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=19.2

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCCccccc
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACE  217 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~  217 (304)
                      .|.++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            344444555555555555555555555445555555443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=8.8e-13  Score=89.82  Aligned_cols=64  Identities=14%  Similarity=0.212  Sum_probs=33.3

Q ss_pred             HHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         201 MAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       201 l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |..|+++|.+.+++.|..|++.|. ...|..|+  .|     .+++||.|+.|++.|. +..|..|+++|.++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~--~~-----c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE--DY-----CGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH--HH-----HHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH--hH-----cCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            444555555555555555555552 55555555  23     5555555555555544 35555555555544

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.6e-12  Score=86.74  Aligned_cols=64  Identities=13%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         228 AIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       228 ~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      .|..|++ .|     .+++||.|..|++.|. .+.|..|+ .|.++.  +|.|+.||+.|. +..|..|+++|.+
T Consensus         4 ~L~~H~~-~~-----c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~--~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEE-TE-----CPLRLAVCQHCDLELS-ILKLKEHE-DYCGAR--TELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCC-CC-----CCCCCEECSSSCCEEC-HHHHHHHH-HHHHHC--EEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCc-cc-----CCCcccCCcccChHhh-HHHHHHHH-hHcCCC--ceEcccCCCcCc-HHHHHHHHHHccC
Confidence            4566777 77     9999999999999995 99999999 899996  999999999987 6999999999875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=76.12  Aligned_cols=39  Identities=15%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             CCCCccccc--cCCccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         243 SEERRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       243 ~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++++|.|.  .|++.|..+..|.+|+++|++++  +|+|++|
T Consensus         8 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k--~~~C~~C   48 (48)
T 2ent_A            8 TGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK--PSGPSSG   48 (48)
T ss_dssp             CCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCC--SCSSCCC
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCC--CCCCCCC
Confidence            555555555  55555555555555555555553  5555554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.1e-11  Score=74.90  Aligned_cols=36  Identities=17%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|.+|++.|.+.+.|..|+++|++++  ||.|
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~~   43 (44)
T 2epv_A            8 SGEKPYECNECGKAFIWKSLLIVHERTHAGVS--GPSS   43 (44)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHGGGSSCS--CCCC
T ss_pred             CCCcCeECCCCCcccCchHHHHHHHhHhcCCC--CCCC
Confidence            55555555555555555555555555555554  5554

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=75.77  Aligned_cols=44  Identities=30%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             HHHhhCCCCccccc--cchhhccCHHHHHHHHHhhcCCCCCCCCCccccccC
Q psy3485         204 HLRTHTKEKPFACE--MCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFC  253 (304)
Q Consensus       204 H~~~H~~~~~~~C~--~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C  253 (304)
                      |.++|+++++|+|.  +|++.|.....|..|++ .|     ++++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SH-----SGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHT-TS-----CCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHH-Hh-----CCCCCCCCCCC
Confidence            45789999999998  89999999999999999 88     99999999988

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=7.7e-12  Score=75.64  Aligned_cols=41  Identities=15%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      |++ .|     ++++||.|.+|+++|.+.+.|.+|+++|++++  ||.|
T Consensus         3 H~~-~H-----~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~C   43 (44)
T 2eox_A            3 SGS-SG-----TDSKSYNCNECGKAFTRIFHLTRHQKIHTRKS--GPSS   43 (44)
T ss_dssp             CCC-CC-----CCCCCEEETTTTEEESSSHHHHTTHHHHCCCC--CCSC
T ss_pred             CCc-CC-----CCCCCeECcccCcccCCHHHHHHHHHHhCCCC--CCCC
Confidence            555 56     77777777777777777777777777777775  7776

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=74.01  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=39.6

Q ss_pred             HHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         203 IHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       203 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      .|+++|+++++|.|.+|++.|...+.|..|++ .|     ++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-TH-----AGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHG-GG-----SSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHh-Hh-----cCCCCCCCC
Confidence            37889999999999999999999999999999 78     999999873

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.4e-12  Score=77.51  Aligned_cols=42  Identities=24%  Similarity=0.467  Sum_probs=22.8

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      |+++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SH-----ERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHH-HH-----HHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHH-Hh-----CCCCCCCCC
Confidence            4445555555555555555555555555555 44     555555553

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=5.4e-12  Score=76.35  Aligned_cols=41  Identities=15%  Similarity=0.284  Sum_probs=22.4

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++|+++++|.|++|++.|...+.|..|++ .|     ++++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IH-----TRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHH-HH-----CCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHH-Hh-----CCCCCCCC
Confidence            4445555555555555555555555555555 44     55555555

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.7e-11  Score=74.54  Aligned_cols=37  Identities=8%  Similarity=0.258  Sum_probs=25.0

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQP  281 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~  281 (304)
                      +++++|.|.+|++.|.+...|.+|+++|++++  +|.|+
T Consensus         8 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k--~~~C~   44 (45)
T 2epu_A            8 TGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK--SGPSS   44 (45)
T ss_dssp             CSCCSEEETTTTEEESSHHHHHHHHTTTSSCC--CCCSC
T ss_pred             CCCcCccCCCCCCccCChHHHHHHHHHhCCCC--CCCCC
Confidence            66666666666666666666666666666664  66665

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=74.38  Aligned_cols=40  Identities=28%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccc
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCA  251 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~  251 (304)
                      ++|+++++|+|.+|++.|.....|..|++ .|     ++++||.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~H-----~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQR-IH-----TGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHT-TT-----SSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHH-Hh-----CCCCCCCCC
Confidence            34566666666666666666666666665 55     566666654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.8e-11  Score=70.83  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=19.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..|++.|.....|..|+++|++++  ||.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~C   41 (41)
T 2ept_A            6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSG--PSSG   41 (41)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHGGGCCCCS--CSCC
T ss_pred             CCCCCeECCCCCCCcCCHHHHHHHHHHhCCCC--CcCC
Confidence            45555555555555555555555555555553  5544

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=5.8e-11  Score=70.50  Aligned_cols=39  Identities=15%  Similarity=0.285  Sum_probs=36.8

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      ++|+++++|+|++|++.|.....|..|++ .|     ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHER-IH-----TGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGG-GC-----CCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHH-Hh-----CCCCCcCC
Confidence            46999999999999999999999999999 88     99999998

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.98  E-value=3.1e-10  Score=66.44  Aligned_cols=36  Identities=19%  Similarity=0.426  Sum_probs=24.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQ  280 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C  280 (304)
                      ++++||.|..||+.|.+.+.|..|+++|++++  +|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k--~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDR--ARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSC--TTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCc--ccee
Confidence            56667777777777777777777777777664  6654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.97  E-value=2.4e-10  Score=66.05  Aligned_cols=30  Identities=13%  Similarity=0.287  Sum_probs=18.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ++++||.|+.|++.|.++..|.+|+++|++
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            7 TGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            556666666666666666666666666554

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=9.7e-12  Score=87.25  Aligned_cols=57  Identities=16%  Similarity=0.323  Sum_probs=35.6

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ++|+++++|.|.+|++.|.....|..|++ .|     ++++||.|..|.    .+..|..|.++|.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~-~H-----t~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLN-IH-----NEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHH-HH-----HHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHH-Hh-----CCCCCcccchhh----hHHHHHhhhccccc
Confidence            45666666666666666666666666666 55     666666665433    44455555666555

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=5.1e-10  Score=72.95  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             CCCCcccccc--CCccCCChHHHHHHH-HhhcCCCCCCcccCC
Q psy3485         243 SEERRYHCAF--CNFTSPTQWAINRHT-KYTHMNTSGPTIQPE  282 (304)
Q Consensus       243 ~~~~~~~C~~--C~k~F~~~~~L~~H~-r~h~~~~~~~~~C~~  282 (304)
                      +++|||.|..  |+|+|..+++|.+|+ ++|++++  ||.|..
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEK--P~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL--PAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC--CCCCCS
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCC--Cccccc
Confidence            5666777754  777777777777775 4666665  666643

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=2.3e-11  Score=85.34  Aligned_cols=54  Identities=7%  Similarity=0.063  Sum_probs=48.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      ++++||.|.+|++.|.....|..|+++|++++  ||.|..|.    .+..|+.|+++|.+
T Consensus        21 ~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ek--p~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           21 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEEF--QKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHHHH--HHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             CCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCC--Ccccchhh----hHHHHHhhhccccc
Confidence            89999999999999999999999999999996  99997654    57777788888776

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.1e-10  Score=65.03  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=26.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      ++++||.|..||++|.++++|..|+++|++++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            77888888888888888888888888888764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.92  E-value=6.3e-10  Score=65.11  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=22.4

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC  250 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C  250 (304)
                      |+++++|.|.+||+.|...+.|..|++ .|     ++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~-~H-----~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMN-VH-----RRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHH-TT-----CCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHH-Hc-----CCCcccee
Confidence            455666666666666666666666666 55     66666654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=7.5e-10  Score=64.31  Aligned_cols=31  Identities=19%  Similarity=0.508  Sum_probs=26.1

Q ss_pred             CCCCcccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|+.  |+++|..++.|++|+++|+++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            7888888876  888888888888888888875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.90  E-value=3.6e-10  Score=65.25  Aligned_cols=35  Identities=11%  Similarity=0.020  Sum_probs=33.0

Q ss_pred             HHHhhcCCCCCCcccCCCcccccchhHHHHHHhhccc
Q psy3485         266 HTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       266 H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |+++|++++  ||.|+.||+.|.++++|..|+++|.+
T Consensus         2 H~~~h~~~k--~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIK--PFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSS--SBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCC--CccCCCCCcccCcHHHHHHHHHHhcc
Confidence            788999996  99999999999999999999999976

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=8.7e-10  Score=71.85  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=26.7

Q ss_pred             hCCCCcccccc--chhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         208 HTKEKPFACEM--CNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       208 H~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      ++|+|||+|.+  |+++|...+.|..|+++.|     ++++||.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriH-----TgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVH-----KSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHS-----SSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhC-----CCCCCccccc
Confidence            56667777754  7777777777777764366     7777776654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.88  E-value=1.3e-09  Score=61.87  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      +++++|.|..|++.|.+++.|..|+++|++++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            67777888888888888888888887777764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.86  E-value=1.7e-09  Score=61.49  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      ++++||.|..|++.|...+.|.+|+++|+++.
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            67777777777777777777777777777764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.8e-09  Score=62.22  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=16.9

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCCC
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKEK  212 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~  212 (304)
                      +|.++++|.|++|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            3444455555555555555555555555554443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.85  E-value=2e-09  Score=60.42  Aligned_cols=32  Identities=9%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCCCCCCcc
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTI  279 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~  279 (304)
                      +||.|..||+.|...++|..|+++|++++  +|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~--~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLG--EER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTC--CCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCC--CCC
Confidence            46778888888888888888887777775  664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.81  E-value=3.4e-09  Score=60.08  Aligned_cols=27  Identities=22%  Similarity=0.572  Sum_probs=13.6

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHH
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      |+++++|.|.+|++.|...+.|..|++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHH
Confidence            444455555555555555555555554

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.3e-09  Score=62.91  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             CCCCccccccCCccCCChHHHHHH-HHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRH-TKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H-~r~h~~~  273 (304)
                      ++++||.|..||++|.+++.|++| +++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            5 SSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            566666666666666666666666 5666553

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.81  E-value=3.3e-09  Score=59.52  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=19.7

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCCCCccc
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTKEKPFA  215 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~  215 (304)
                      +||.|++||+.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            35666666666666666666666666666554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.80  E-value=3.9e-09  Score=59.93  Aligned_cols=27  Identities=22%  Similarity=0.602  Sum_probs=14.0

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHH
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      |+++++|.|.+|++.|...+.|..|++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHH
Confidence            444555555555555555555555555

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.4e-09  Score=60.57  Aligned_cols=31  Identities=23%  Similarity=0.488  Sum_probs=24.3

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|..|++.|.....|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            7777888888888888888888888777765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=5.8e-09  Score=59.56  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=25.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +++++|.|..|++.|.+...|..|+++|+++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            7788888888888888888888888888775

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=4.3e-09  Score=60.19  Aligned_cols=31  Identities=13%  Similarity=0.527  Sum_probs=22.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|..|++.|...+.|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            6777777777777777777777777777664

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.7e-09  Score=60.44  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|..|++.|..++.|.+|+++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            5 SSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            6667777777777777777777777777664

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.7e-09  Score=60.88  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             CCCCccccccCCccCCCh-HHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQ-WAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~-~~L~~H~r~h~~~  273 (304)
                      ++++||.|..|++.|.++ +.|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            777778888888888777 7788887777765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=1.6e-09  Score=62.53  Aligned_cols=36  Identities=11%  Similarity=-0.118  Sum_probs=32.2

Q ss_pred             HHhhcCCCCCCcccCCCcccccchhHHHHH-HhhcccCC
Q psy3485         267 TKYTHMNTSGPTIQPECIKILWSFLSYFIW-ISVDVNRL  304 (304)
Q Consensus       267 ~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h-~~~~~~~~  304 (304)
                      |++|++++  ||.|+.||+.|.++++|..| +++|++-|
T Consensus         1 ~~~H~~~k--~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   37 (37)
T 2elm_A            1 GSSGSSGH--LYYCSQCHYSSITKNCLKRHVIQKHSNIL   37 (37)
T ss_dssp             CCSSSSSC--EEECSSSSCEEECHHHHHHHHHHHTCCCC
T ss_pred             CCccCCCc--CeECCCCCcccCCHHHHHHHHHHHccCcC
Confidence            35788886  99999999999999999999 99998754

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=5.5e-09  Score=60.50  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=27.2

Q ss_pred             CCCCccccc--cCCccCCChHHHHHHHHhhcCCCCCCc
Q psy3485         243 SEERRYHCA--FCNFTSPTQWAINRHTKYTHMNTSGPT  278 (304)
Q Consensus       243 ~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~~~~~~  278 (304)
                      ++++||.|.  .|+++|.++++|++|+++|++++  +|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k--~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTL--KF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTT--TT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCC--CC
Confidence            678888888  48888888888888888888875  55

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=1.1e-08  Score=67.02  Aligned_cols=40  Identities=10%  Similarity=0.074  Sum_probs=32.0

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcc
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIK  285 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k  285 (304)
                      .+++||.|..|+|.|..++.|.+|+++|+++.   ..|.++..
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~---~~~~~~~~   48 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVTS---LQLGYIDL   48 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS---CCCCSCCC
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCCc---cccccccC
Confidence            67889999999999999999999999998873   45555543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.74  E-value=4.1e-09  Score=60.23  Aligned_cols=25  Identities=16%  Similarity=0.425  Sum_probs=23.2

Q ss_pred             CCCCccccccCCccCCChHHHHHHH
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHT  267 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~  267 (304)
                      .+++||.|..|||+|.++++|++|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            7899999999999999999999998

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=8.2e-09  Score=59.85  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=16.9

Q ss_pred             CCCCCCcccCC--CcccccChHHHHHHHHhhCCC
Q psy3485         180 NPMRRNFMCFA--CPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       180 h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      +.+++||.|++  |+++|..++.|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34455555543  555555555555555555543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=7.5e-09  Score=59.12  Aligned_cols=31  Identities=16%  Similarity=0.423  Sum_probs=23.8

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|..|++.|.....|..|+++|+++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            6777777777777777777777777777765

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.69  E-value=7.2e-09  Score=63.62  Aligned_cols=32  Identities=13%  Similarity=0.310  Sum_probs=25.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHH-hhcCCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTK-YTHMNT  274 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r-~h~~~~  274 (304)
                      ++++||.|.+||+.|....+|.+|++ +|+++.
T Consensus         3 t~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             TTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            78888888888888888888888888 887775

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.68  E-value=1.2e-08  Score=58.75  Aligned_cols=31  Identities=10%  Similarity=0.283  Sum_probs=26.0

Q ss_pred             CCCCcccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|.+  ||+.|..++.|.+|+++|+++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            7888888884  888888888888888888876

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.8e-08  Score=57.46  Aligned_cols=32  Identities=28%  Similarity=0.625  Sum_probs=16.4

Q ss_pred             CCCCCCcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         180 NPMRRNFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       180 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      |.++++|.|++|++.|.....|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            44455555555555555555555555555443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1.2e-08  Score=59.10  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=15.7

Q ss_pred             CCCCCcccC--CCcccccChHHHHHHHHhhCCCCcc
Q psy3485         181 PMRRNFMCF--ACPYYCRYGSSMAIHLRTHTKEKPF  214 (304)
Q Consensus       181 ~~~~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~  214 (304)
                      .++++|.|+  .|++.|.....|..|+++|+++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            344444444  2444444444444444444444443

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.6e-08  Score=57.71  Aligned_cols=27  Identities=15%  Similarity=0.392  Sum_probs=14.6

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHH
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      |+++++|+|.+|++.|...+.|..|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHH
Confidence            445555555555555555555555555

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2.3e-08  Score=56.95  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=18.9

Q ss_pred             cCCCCCCcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         179 KNPMRRNFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      .|.++++|.|++|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            345555566666666666655566665555554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2.1e-08  Score=57.23  Aligned_cols=27  Identities=41%  Similarity=0.838  Sum_probs=14.6

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHH
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      |+++++|+|.+|++.|...+.|..|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHH
Confidence            455555555555555555555555555

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.7e-08  Score=57.97  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=19.0

Q ss_pred             cCCCCCCcccCCCcccccCh-HHHHHHHHhhCCC
Q psy3485         179 KNPMRRNFMCFACPYYCRYG-SSMAIHLRTHTKE  211 (304)
Q Consensus       179 ~h~~~~~~~C~~C~k~f~~~-~~l~~H~~~H~~~  211 (304)
                      +|.++++|.|++|++.|... ..|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            45555556666666666655 5566665555544

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.63  E-value=1.9e-08  Score=54.58  Aligned_cols=28  Identities=18%  Similarity=0.458  Sum_probs=17.3

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|..||+.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4566666666666666666666666554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.62  E-value=2.8e-08  Score=53.48  Aligned_cols=28  Identities=21%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|..||+.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3566666666666666666666666654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.62  E-value=1.5e-08  Score=54.19  Aligned_cols=25  Identities=16%  Similarity=0.440  Sum_probs=11.4

Q ss_pred             ccccccCCccCCChHHHHHHHHhhc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      ||.|..||+.|.+.+.|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhcC
Confidence            4444444444444444444444443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.61  E-value=1.8e-08  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=10.9

Q ss_pred             ccccccCCccCCChHHHHHHHHhh
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h  270 (304)
                      ||.|..||+.|...+.|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHc
Confidence            444444444444444444444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.60  E-value=2e-08  Score=54.08  Aligned_cols=27  Identities=11%  Similarity=0.173  Sum_probs=15.9

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||.|..||+.|...+.|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            555666666666666666666655554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.60  E-value=1.4e-08  Score=53.98  Aligned_cols=24  Identities=21%  Similarity=0.573  Sum_probs=10.6

Q ss_pred             ccccccCCccCCChHHHHHHHHhh
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h  270 (304)
                      ||.|..||+.|..++.|.+|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHhc
Confidence            444444444444444444444443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=3.5e-08  Score=56.24  Aligned_cols=32  Identities=31%  Similarity=0.565  Sum_probs=15.9

Q ss_pred             CCCCCCcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         180 NPMRRNFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       180 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      |.++++|.|++|++.|.....|..|+++|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            34444555555555555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=3.7e-08  Score=52.93  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=17.3

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||.|..||+.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            566666666666666666666666654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=4.3e-08  Score=54.18  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             Cccccc--cCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCA--FCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~--~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|.  .||+.|.+.+.|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            566666  5666666666666666666654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.56  E-value=2.1e-09  Score=59.91  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=14.3

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||.|..||++|..+++|.+|+++|+++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~   28 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIV   28 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccC
Confidence            455555555555555555555555554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.55  E-value=4.4e-08  Score=53.75  Aligned_cols=28  Identities=18%  Similarity=0.444  Sum_probs=17.1

Q ss_pred             Cccccc--cCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCA--FCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~--~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|.  .||++|.+.+.|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            356665  5666666666666666666554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.54  E-value=4.2e-08  Score=52.62  Aligned_cols=28  Identities=14%  Similarity=0.280  Sum_probs=18.3

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|..||+.|...+.|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3566666666666666666666666654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.54  E-value=3.4e-08  Score=56.37  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=14.6

Q ss_pred             CCCCCcccCCCcccccChHHHHHHH
Q psy3485         181 PMRRNFMCFACPYYCRYGSSMAIHL  205 (304)
Q Consensus       181 ~~~~~~~C~~C~k~f~~~~~l~~H~  205 (304)
                      .+++||.|++||++|.++++|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4555566666666666666555555

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.54  E-value=6.6e-09  Score=63.46  Aligned_cols=31  Identities=16%  Similarity=0.366  Sum_probs=20.8

Q ss_pred             CCCCccccc--cCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCA--FCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ++++||.|.  .||++|..+++|++|+++|+++
T Consensus        14 ~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             CCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            666667774  5777777777777777666664

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.53  E-value=3.8e-08  Score=52.01  Aligned_cols=25  Identities=24%  Similarity=0.575  Sum_probs=12.5

Q ss_pred             cccccCCccCCChHHHHHHHHhhcC
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      |.|..||+.|.+++.|.+|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            4455555555555555555554443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.53  E-value=4.3e-08  Score=60.06  Aligned_cols=27  Identities=26%  Similarity=0.717  Sum_probs=14.7

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHH
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      |+++++|.|.+||+.|.....|..|++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhh
Confidence            455555555555555555555555555

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.52  E-value=6.1e-08  Score=52.41  Aligned_cols=29  Identities=28%  Similarity=0.709  Sum_probs=20.7

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      ++|.|..||+.|...+.|..|+++|+++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            36777777777777777777777777653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.52  E-value=4.2e-09  Score=58.60  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=12.3

Q ss_pred             ccccccchhhccCHHHHHHHHHhhc
Q psy3485         213 PFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      ||.|.+||+.|...+.|..|++ .|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~-~H   25 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIK-TA   25 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTT-SS
T ss_pred             CCCCCCCCcccCCHHHHHHHHH-HH
Confidence            4555555555555555555554 44

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.92  E-value=1.2e-08  Score=55.53  Aligned_cols=28  Identities=21%  Similarity=0.428  Sum_probs=17.0

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|..||+.|...++|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4566666666666666666666666554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=1.2e-08  Score=55.12  Aligned_cols=27  Identities=11%  Similarity=0.252  Sum_probs=15.8

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ||.|..||+.|...++|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            555666666666666666666555543

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.50  E-value=4.6e-08  Score=52.21  Aligned_cols=27  Identities=15%  Similarity=-0.044  Sum_probs=25.3

Q ss_pred             CCcccCCCcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      ++|.|+.||+.|.++++|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            489999999999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.49  E-value=5.6e-08  Score=51.42  Aligned_cols=26  Identities=12%  Similarity=0.040  Sum_probs=24.5

Q ss_pred             CCcccCCCcccccchhHHHHHHhhcc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      +||.|+.||+.|.++++|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            48999999999999999999999985

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.48  E-value=7.7e-08  Score=55.24  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=15.7

Q ss_pred             CCCCCCcccCC--CcccccChHHHHHHHHhhCCC
Q psy3485         180 NPMRRNFMCFA--CPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       180 h~~~~~~~C~~--C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      |.++++|.|.+  |++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34445555542  555555555555555555443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.47  E-value=6.6e-08  Score=51.94  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=25.9

Q ss_pred             CCcccCCCcccccchhHHHHHHhhcccC
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      +||.|+.||+.|.++++|..|+++|++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4899999999999999999999999863

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.47  E-value=4.5e-08  Score=51.89  Aligned_cols=26  Identities=19%  Similarity=0.042  Sum_probs=24.5

Q ss_pred             CCcccCCCcccccchhHHHHHHhhcc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      +||.|+.||+.|.++++|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            48999999999999999999999984

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.46  E-value=8.3e-08  Score=50.61  Aligned_cols=26  Identities=12%  Similarity=-0.086  Sum_probs=24.1

Q ss_pred             CcccCCCcccccchhHHHHHHhhccc
Q psy3485         277 PTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      ||.|+.||+.|.++++|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58999999999999999999999976

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.45  E-value=1.4e-07  Score=50.53  Aligned_cols=27  Identities=30%  Similarity=0.565  Sum_probs=16.1

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      ||.|++|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            456666666666666666666666554

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=2.2e-08  Score=52.58  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=10.2

Q ss_pred             ccccccCCccCCChHHHHHHHHhh
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h  270 (304)
                      ||.|..||++|...+.|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            344444444444444444444433

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=51.23  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=13.2

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      +||.|+.|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            344455555555555555555444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.77  E-value=3.3e-08  Score=51.85  Aligned_cols=26  Identities=15%  Similarity=0.019  Sum_probs=24.3

Q ss_pred             CCcccCCCcccccchhHHHHHHhhcc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      +||.|+.||+.|.++++|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            48999999999999999999999884

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.40  E-value=1e-07  Score=51.59  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=12.6

Q ss_pred             ccccccCCccCCChHHHHHH-HHhhcC
Q psy3485         247 RYHCAFCNFTSPTQWAINRH-TKYTHM  272 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H-~r~h~~  272 (304)
                      ||.|..||+.|.+.+.|..| +++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            44455555555555555555 344444

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.40  E-value=2.5e-07  Score=60.52  Aligned_cols=31  Identities=13%  Similarity=0.052  Sum_probs=15.3

Q ss_pred             CCCCCCcccCCCcccccChHHHHHHHHhhCC
Q psy3485         180 NPMRRNFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       180 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      +.+++||.|.+|++.|..+..|..|+++|++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            3344455555555555555555555555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.40  E-value=1.7e-08  Score=61.55  Aligned_cols=38  Identities=8%  Similarity=-0.098  Sum_probs=33.0

Q ss_pred             HHHHHHhhcCCCCCCcccC--CCcccccchhHHHHHHhhccc
Q psy3485         263 INRHTKYTHMNTSGPTIQP--ECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       263 L~~H~r~h~~~~~~~~~C~--~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +..|+..|++++  +|.|+  .||+.|.++++|..|+++|++
T Consensus         6 ~~~~~~~H~~~k--~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A            6 SIDKYVKEMPDK--TFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SGGGSCEEETTT--EEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             HHHHHhccCCCC--CeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            345566799986  99996  799999999999999999986

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=1.4e-07  Score=50.49  Aligned_cols=27  Identities=11%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             CCcccCCCcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +||.|+.||+.|.+.++|..|+++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            489999999999999999999999986

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.39  E-value=2.4e-07  Score=49.96  Aligned_cols=28  Identities=18%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKEK  212 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~  212 (304)
                      +|.|++|++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            5666666666666666666666666554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.38  E-value=2.3e-07  Score=50.75  Aligned_cols=27  Identities=37%  Similarity=0.545  Sum_probs=14.8

Q ss_pred             CcccC--CCcccccChHHHHHHHHhhCCC
Q psy3485         185 NFMCF--ACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       185 ~~~C~--~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      ||.|+  .||+.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            45554  5555555555555555555544

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.38  E-value=1.6e-07  Score=50.26  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=15.8

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      ||.|++|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            455666666666666666665555554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.37  E-value=2.8e-07  Score=50.72  Aligned_cols=28  Identities=18%  Similarity=0.402  Sum_probs=17.5

Q ss_pred             CCcccC--CCcccccChHHHHHHHHhhCCC
Q psy3485         184 RNFMCF--ACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       184 ~~~~C~--~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            456666  5666666666666666666654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.6e-08  Score=52.66  Aligned_cols=27  Identities=15%  Similarity=0.069  Sum_probs=25.3

Q ss_pred             CCcccCCCcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +||.|+.||+.|.++++|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            389999999999999999999999976

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.31  E-value=2.9e-07  Score=49.74  Aligned_cols=28  Identities=4%  Similarity=-0.134  Sum_probs=25.5

Q ss_pred             CCcccCCCcccccchhHHHHH-HhhcccC
Q psy3485         276 GPTIQPECIKILWSFLSYFIW-ISVDVNR  303 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h-~~~~~~~  303 (304)
                      ++|.|+.||+.|.++++|..| +++|.+-
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            389999999999999999999 7899864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.30  E-value=2.7e-07  Score=49.37  Aligned_cols=24  Identities=4%  Similarity=-0.087  Sum_probs=10.7

Q ss_pred             CcccC--CCcccccchhHHHHHHhhc
Q psy3485         277 PTIQP--ECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       277 ~~~C~--~C~k~F~~~~~l~~h~~~~  300 (304)
                      +|.|+  .||+.|.++++|..|+++|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            34444  4444444444444444444

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=9e-08  Score=51.81  Aligned_cols=26  Identities=23%  Similarity=0.520  Sum_probs=12.4

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      ||.|+.|++.|.....|..|+++|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            44444444444444444444444443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.27  E-value=3.6e-07  Score=48.88  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=25.3

Q ss_pred             Cccccc--cCCccCCChHHHHHHHHhhcC
Q psy3485         246 RRYHCA--FCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       246 ~~~~C~--~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ++|.|.  .||+.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999975

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.87  E-value=1.9e-05  Score=51.20  Aligned_cols=23  Identities=17%  Similarity=0.040  Sum_probs=12.0

Q ss_pred             CcccC--CCcccccchhHHHHHHhh
Q psy3485         277 PTIQP--ECIKILWSFLSYFIWISV  299 (304)
Q Consensus       277 ~~~C~--~C~k~F~~~~~l~~h~~~  299 (304)
                      +|.|.  .|+..+....+|+.||++
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhccc
Confidence            45554  455555555555555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.82  E-value=2.6e-05  Score=50.53  Aligned_cols=53  Identities=23%  Similarity=0.384  Sum_probs=27.7

Q ss_pred             chhhccCHHHHHHHHHhhcCCCCCC-CCCccccc--cCCccCCChHHHHHHHHhhc
Q psy3485         219 CNYRAASKIAIYAHMRTTHIMPDTS-EERRYHCA--FCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       219 C~k~F~~~~~L~~H~~~~H~~~~~~-~~~~~~C~--~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |++.|.+...|..|+...|.....+ ...+|.|.  .|++.+.....|..|+++.|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            5566666666666654355211101 11256664  56666666666666666543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.54  E-value=9.7e-06  Score=60.40  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             CCcccCCCcccccChHHHHHHH--HhhC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHL--RTHT  209 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~--~~H~  209 (304)
                      +++.|.+|+.+|.+...+..|.  +.|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~   58 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHA   58 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHH
Confidence            5688888888888888888887  4564

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.51  E-value=0.0001  Score=54.82  Aligned_cols=76  Identities=17%  Similarity=0.102  Sum_probs=50.8

Q ss_pred             CccccccchhhccCHHHHHHHH--HhhcCCCCCCCCCccccccC------CccCCChHHHHHHHHhhcCCCCCCcccCCC
Q psy3485         212 KPFACEMCNYRAASKIAIYAHM--RTTHIMPDTSEERRYHCAFC------NFTSPTQWAINRHTKYTHMNTSGPTIQPEC  283 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~--~~~H~~~~~~~~~~~~C~~C------~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C  283 (304)
                      +++.|.+|...|.+.+.+..|.  + .|.    ...+.|.+..+      ++.|....    +...+.+.  +.|.|.+|
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gk-kH~----~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~C~~C   99 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSR-KHA----NKVRRYMAINQGEDSVPAKKFKAAP----AEISDGED--RSKCCPVC   99 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCH-HHH----HHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCC--TTTEETTT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcH-HHH----HHHHHHhcccCcccCCCCCccCCCc----cccccCCC--CCeEcCCC
Confidence            6789999999999999999998  4 451    12244444211      33333221    11223333  48999999


Q ss_pred             cccccchhHHHHHHh
Q psy3485         284 IKILWSFLSYFIWIS  298 (304)
Q Consensus       284 ~k~F~~~~~l~~h~~  298 (304)
                      ++.|.+...|..|+.
T Consensus       100 ~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          100 NMTFSSPVVAESHYI  114 (127)
T ss_dssp             TEECSSHHHHHHHHT
T ss_pred             CCEeCCHHHHHHHHC
Confidence            999999999999986

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.29  E-value=5.1e-05  Score=55.50  Aligned_cols=27  Identities=11%  Similarity=0.090  Sum_probs=20.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHh
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      +|+++|.|..|+|.|.+.+.|..|+++
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhh
Confidence            777778887788888888888777765

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.83  E-value=0.00039  Score=54.48  Aligned_cols=105  Identities=13%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             ccCCCcccccChHHHHH-HHHhhCCCCcccc--ccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHH
Q psy3485         187 MCFACPYYCRYGSSMAI-HLRTHTKEKPFAC--EMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAI  263 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~-H~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L  263 (304)
                      .|++|...+.....+.. -+..-...-...|  .-|+..+. ...|..|.. .      -.-++..|+.|+..+ .+..|
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~-~~~l~~H~~-~------C~~~~v~C~~C~~~~-~r~~l  125 (170)
T 3hcs_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKME-LRHLEDHQA-H------CEFALMDCPQCQRPF-QKFHI  125 (170)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEE-GGGHHHHHT-T------CTTSEEECTTTCCEE-EGGGH
T ss_pred             CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceec-HhHHHHHHh-c------CCceeeECCCCChHH-HHHHH
Confidence            88999887765321100 0111112344667  45776654 456778875 3      456788999999988 67789


Q ss_pred             HHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcccC
Q psy3485         264 NRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       264 ~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      ..|....=...  +..|+.|+..|. ...|-.|..++.+.
T Consensus       126 ~~H~~~~C~~r--~~~C~~C~~~~~-~~~l~~H~~~~~~~  162 (170)
T 3hcs_A          126 NIHILKDCPRR--QVSCDNCAASMA-FEDKEIHDQNCPLA  162 (170)
T ss_dssp             HHHHHHTCTTC--EEECTTTCCEEE-GGGHHHHHTTCCC-
T ss_pred             HHHhhhhCCCC--CeECCCCCCccC-HHHHHhHHHhCcCh
Confidence            99987666664  789999999885 56788999988774

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.78  E-value=0.00031  Score=51.34  Aligned_cols=32  Identities=3%  Similarity=-0.148  Sum_probs=28.4

Q ss_pred             HHHhhcCCCCCCcccCCCcccccchhHHHHHHhh
Q psy3485         266 HTKYTHMNTSGPTIQPECIKILWSFLSYFIWISV  299 (304)
Q Consensus       266 H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~  299 (304)
                      +...|+|+.  +|.|..|+|.|.+.++|..|+++
T Consensus        41 ~ded~tGek--pfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGG--LHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGG--CSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCc--ceEcccCcchhCCHHHHHHHHhh
Confidence            445688886  99999999999999999999985

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.74  E-value=0.0013  Score=38.60  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=22.8

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      ..+|.|+.|++.|.....|++||+.-=
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CCceeCCcccccccchHHHHhhhhhcC
Confidence            368999999999999999999997433

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.47  E-value=0.00098  Score=52.16  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             CCcccC--CCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChH
Q psy3485         184 RNFMCF--ACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQW  261 (304)
Q Consensus       184 ~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~  261 (304)
                      ..+.|+  -|+..+. ...|..|+. .-.-++..|+.|+..+ .+..|..|.. ..     -..++-.|+.|+..|. ..
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~-~~-----C~~r~~~C~~C~~~~~-~~  150 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHIL-KD-----CPRRQVSCDNCAASMA-FE  150 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHH-HT-----CTTCEEECTTTCCEEE-GG
T ss_pred             cccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhh-hh-----CCCCCeECCCCCCccC-HH
Confidence            456774  4777665 456888874 3344678999999888 6778999997 55     7888999999999885 56


Q ss_pred             HHHHHHHhhcCCC
Q psy3485         262 AINRHTKYTHMNT  274 (304)
Q Consensus       262 ~L~~H~r~h~~~~  274 (304)
                      .|..|..++.|+.
T Consensus       151 ~l~~H~~~~~~~~  163 (170)
T 3hcs_A          151 DKEIHDQNCPLAL  163 (170)
T ss_dssp             GHHHHHTTCCC--
T ss_pred             HHHhHHHhCcChh
Confidence            8899999999985

>1pzw_A Transcription factor grauzone; dimerization, transcription regulation, treble-CLEF zinc FIN transcription; 2.00A {Drosophila melanogaster} SCOP: g.39.1.10

Probab=95.95  E-value=0.0019  Score=43.48  Aligned_cols=36  Identities=11%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             hhhHHHHhhCccc---ccCCchHHHHHHHHHHHhhhhhh
Q psy3485           8 PNLQQIQKTNPKL---KKVNYPIIVARKMWTKLKKNHQN   43 (304)
Q Consensus         8 ~~l~~~~~~~~~~---~~~~~p~~iC~~C~~~l~~f~~~   43 (304)
                      +.|..++....++   ..+++|..||..||..|+.||+.
T Consensus        27 ~~l~~~I~~~~~i~i~~~d~lP~~IC~~C~~~l~~~~~F   65 (80)
T 1pzw_A           27 SKVAEVLRQHFWFEVLPNDEISKVICNVCWTQVSEFHQF   65 (80)
T ss_dssp             CSHHHHHHHHCSSCCCSSCSSCSEEEHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhCCCcCcccCCccchHHHHHHHHHHHHHH
Confidence            5567777766655   58899999999999999999955

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.84  E-value=0.0044  Score=36.31  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=16.4

Q ss_pred             CccccccchhhccCHHHHHHHHH
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      .+|.|+.|+..|+....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45677777777777777777777

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.54  E-value=0.027  Score=30.85  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .|.|++|.+.|.+...|..|....|..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            488999999999999999998776654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.11  E-value=0.12  Score=28.30  Aligned_cols=26  Identities=19%  Similarity=0.389  Sum_probs=20.4

Q ss_pred             CcccCCCcccccChHHHHHHHHh-hCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRT-HTK  210 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~-H~~  210 (304)
                      .|.|++|.+.|.+...|..|... |..
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            38888888888888888888654 653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=91.28  E-value=0.11  Score=35.01  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCC
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNT  274 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~  274 (304)
                      ..-..|-+||+.|+.   |++|.++|||..
T Consensus        19 ~d~iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           19 DDHIVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             SSCEECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             CCceEecccchhhHH---HHHHHHHccCCC
Confidence            344689999999984   789999988876

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.26  E-value=0.24  Score=27.20  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHh
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      ....++.|..|+-+|.+-.++..|++.
T Consensus         4 ~~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            4 AEVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CccCcCeeccccceehhhHHHhhhhee
Confidence            345677888888888888888888754

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.21  E-value=0.14  Score=33.77  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=24.9

Q ss_pred             CCCcccCCCcccccChHHHHHHHHhhCCCCccccccchhhccC
Q psy3485         183 RRNFMCFACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAAS  225 (304)
Q Consensus       183 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~  225 (304)
                      -..|.|+.||-++... .|..|..+-.+-..|.|-.|++.|..
T Consensus         8 MV~F~C~~Cgd~lKK~-kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A            8 MVFFTCNACGESVKKI-QVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             CCEEEESSSCCEEETT-HHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             eeEEEcCCCCCeeecc-cchhHHhhCCCCCcEEecccCCeeCC
Confidence            3456666666555433 36666555444455667667766664

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=90.83  E-value=0.13  Score=29.95  Aligned_cols=30  Identities=20%  Similarity=0.120  Sum_probs=18.6

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      .|.|-.||+.|....         -.. -+..+|++||..
T Consensus         3 iY~C~rCg~~fs~~e---------l~~-lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQ---------LKV-LPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCC---------SCC-CSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHH---------Hhh-CCCcccCccCcE
Confidence            588888888887651         111 135788888864

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=89.80  E-value=0.14  Score=30.82  Aligned_cols=20  Identities=20%  Similarity=-0.134  Sum_probs=14.8

Q ss_pred             cccCCCcccccchhHHHHHH
Q psy3485         278 TIQPECIKILWSFLSYFIWI  297 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~  297 (304)
                      -.|+.|+..|+.+.++..||
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            57777777777777777776

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=88.26  E-value=0.24  Score=26.16  Aligned_cols=24  Identities=13%  Similarity=-0.063  Sum_probs=18.5

Q ss_pred             CcccCCCcccccchhHHHHHHhhc
Q psy3485         277 PTIQPECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~~  300 (304)
                      .-.|..|-|.|+.-.+|+.||+--
T Consensus         9 kqhcrfckkkysdvknlikhire~   32 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDA   32 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346888888888888888888743

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=88.25  E-value=0.84  Score=27.47  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             cccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc-ccchhHHHHHHhh
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI-LWSFLSYFIWISV  299 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~-F~~~~~l~~h~~~  299 (304)
                      -+|++|...--+...|..|...--.++     ||+|=.. -.+.+.|..|++|
T Consensus         4 mvC~~C~~ECET~kEl~~H~~sCp~gq-----CPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            4 MVCDVCHHECETAKELESHRQSCINGQ-----CPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TBCTTTCCBCSSTTTHHHHHHHHTTTB-----CTTTCCBCCSSHHHHHHHHTT
T ss_pred             chhhHHHhhhhhHHHHHHHhccCCCCC-----CCcccCcCCcCHHHHHHHHHH
Confidence            478899999999999999988776654     8888654 5888899999875

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=86.07  E-value=0.59  Score=24.24  Aligned_cols=22  Identities=14%  Similarity=0.058  Sum_probs=16.7

Q ss_pred             CcccCCCcccccchhHHHHHHh
Q psy3485         277 PTIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      .|.|++|.....+..+|.+|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            5778888888888887777764

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=85.66  E-value=0.2  Score=32.96  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             CccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      -.|.|+.||.+++ +..|..|...-      .+...|.|--|++.|.. ..++.|..-.++.
T Consensus         9 V~F~C~~Cgd~lK-K~kv~~H~~~C------r~~~~~SCIDC~~~F~~-~~y~~HtsCISEa   62 (79)
T 1wjv_A            9 VFFTCNACGESVK-KIQVEKHVSNC------RNCECLSCIDCGKDFWG-DDYKSHVKCISEG   62 (79)
T ss_dssp             CEEEESSSCCEEE-TTHHHHHHHHC------TTCCEEEETTTTEEEEG-GGTTTCCCCCSCT
T ss_pred             eEEEcCCCCCeee-cccchhHHhhC------CCCCcEEecccCCeeCC-CCEeCEeeeCChh
Confidence            3466777775544 34556665522      23345677777777763 4455554444444

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=85.19  E-value=0.6  Score=32.61  Aligned_cols=31  Identities=19%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccccc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILW  288 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~  288 (304)
                      ..||.|..||..|.             ....+|-+|+.|+....
T Consensus        65 v~p~~C~~CG~~F~-------------~~~~kPsrCP~CkSe~I   95 (105)
T 2gmg_A           65 IKPAQCRKCGFVFK-------------AEINIPSRCPKCKSEWI   95 (105)
T ss_dssp             ECCCBBTTTCCBCC-------------CCSSCCSSCSSSCCCCB
T ss_pred             EECcChhhCcCeec-------------ccCCCCCCCcCCCCCcc
Confidence            46788888888881             11124788888887653

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=84.47  E-value=0.071  Score=35.01  Aligned_cols=16  Identities=13%  Similarity=0.179  Sum_probs=10.0

Q ss_pred             CcccCCCcccccChHH
Q psy3485         185 NFMCFACPYYCRYGSS  200 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~  200 (304)
                      .-.|++||+.......
T Consensus         8 ~~~~PlCG~~L~W~eL   23 (95)
T 2k5c_A            8 MAKCPICGSPLKWEEL   23 (95)
T ss_dssp             CEECSSSCCEECHHHH
T ss_pred             cccCCcCCCccCHHHH
Confidence            3467777776665543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.56  E-value=0.37  Score=29.07  Aligned_cols=20  Identities=20%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             cccccCCccCCChHHHHHHH
Q psy3485         248 YHCAFCNFTSPTQWAINRHT  267 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~  267 (304)
                      -.|..|+..|..+.+|+.|.
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            58999999999999999997

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=83.24  E-value=0.47  Score=31.09  Aligned_cols=47  Identities=21%  Similarity=0.441  Sum_probs=24.2

Q ss_pred             Cccc-CCCcccccChHHHHHHHHhhCCCCccccccchhhccCHHHHHHHH
Q psy3485         185 NFMC-FACPYYCRYGSSMAIHLRTHTKEKPFACEMCNYRAASKIAIYAHM  233 (304)
Q Consensus       185 ~~~C-~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~  233 (304)
                      +..| ..|+..+.. ..|..|+...-..++..|..|+..|. ...|..|.
T Consensus        16 ~v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~-~~~l~~H~   63 (76)
T 2yuc_A           16 VIPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHE   63 (76)
T ss_dssp             CCBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCC-HHHHHHTT
T ss_pred             ccCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCCCccC-HHHHHHHH
Confidence            4455 356655543 33555554444445566666666554 33344444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.86  E-value=1.8  Score=23.66  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=14.4

Q ss_pred             CCcccCCCcccccChHHHHHHHH
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLR  206 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~  206 (304)
                      ..+.|..|+-+|.+-..+..|.+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            45566666666666666666654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=82.12  E-value=0.68  Score=31.20  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=14.5

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCCCCc
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTKEKP  213 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~  213 (304)
                      ...|-+||+.|..   |.+|+++|+|-.|
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             ceEecccchhhHH---HHHHHHHccCCCH
Confidence            3466666666652   5566666555443

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.92  E-value=0.63  Score=30.64  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=21.3

Q ss_pred             CccccccCCccCC-------ChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSP-------TQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~-------~~~~L~~H~r~h~~~  273 (304)
                      ..=.|.+|++.|.       .-++|.+|++.+|..
T Consensus        27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           27 QYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             SCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             CEEECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            4568899999887       356888998877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-06
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	5e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-05
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	3e-04
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.003
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.003

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (96), Expect = 4e-06
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
           RTH+ EKP+ C +C+ R      +  H+   H
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (95), Expect = 5e-06
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTHIM 239
             R  T  KPF C  C+   +    +  H +  H++
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHML 36

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 202 AIHLRTHTKEKPFACEMCNYRAASKIAIYAHMRT 235
                   + + + C+ C    +    +  H RT
Sbjct: 1   GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTH 237
           RTHT EKP+AC  C+     K  +  H +  H
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 185 NFMC--FACPYYCRYGSSMAIHLRTHTKEKPFACE 217
           +F C   AC     +   +  H++ H+  + + CE
Sbjct: 1   SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 186 FMCFACPYYCRYGSSMAIHLR-THTKEKPFACEM 218
           ++C +C         +  H++  HT E+P  C++
Sbjct: 6   YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 209 TKEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHC 250
           +  KP+ C+ C    +    +  H++  H     + ER + C
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKC 37

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRT 235
           H+ EKP+ C  C    +    +  H R 
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQRV 29

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 186 FMCFACPYYCRYGSSMAIHLRTHTKEK 212
           F C  CP        ++ H++TH  +K
Sbjct: 3   FACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (74), Expect = 0.003
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 208 HTKEKPFACEMCNYRAASKIAIYAHMRT 235
            + ++PF C +C     +K     H++ 
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHLKV 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.77
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.74
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.41
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.4
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.33
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.32
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.32
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.3
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.29
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.26
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.25
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.23
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.23
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.22
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.2
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.18
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.16
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.14
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.14
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.1
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.08
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.08
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.07
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.05
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.05
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.99
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.91
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.9
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.89
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.88
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.84
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.82
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.72
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.67
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.6
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.53
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.38
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.35
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.28
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.22
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.22
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.2
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.16
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.13
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.05
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.98
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.96
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.95
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.85
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.77
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.77
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.76
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.71
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.71
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.65
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.61
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.53
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.52
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.41
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.4
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.39
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.39
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.29
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.13
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.09
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.03
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.92
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.87
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.83
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.82
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.8
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.77
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.74
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.74
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.54
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.5
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.4
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.28
d1v65a_	64	hypotheical protein 2610044O15Rik {Mouse (Mus musc	96.25
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.21
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.15
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.13
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1pzwa_	80	Transcription factor grauzone Cg33133-Pa, zinc fin	95.97
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.67
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.64
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.6
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.48
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.08
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.01
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.77
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.15
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.02
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	93.8
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.67
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.14
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.02
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.94
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	91.88
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	91.86
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.72
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.48
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.46
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.97
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	90.9
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	90.68
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.56
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	90.52
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.48
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.14
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	89.95
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	88.48
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.78
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	83.25
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	82.07
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	81.47

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-19  Score=113.73  Aligned_cols=53  Identities=15%  Similarity=0.148  Sum_probs=41.3

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCcccccchhHHHHHHhhc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVD  300 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~  300 (304)
                      ||||.|+ ||++|+.+.+|..|+++|+|++  ||.|++||++|+++++|.+|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ek--py~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLR--PYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCC--SEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhcccccc--CCcCCCcCCEecCHHHHHHHHhcC
Confidence            5677884 8888888888888888887775  788888888888888888887776

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.4e-19  Score=110.90  Aligned_cols=53  Identities=25%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             CCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhh
Q psy3485         211 EKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       211 ~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h  270 (304)
                      ||||+|+ ||++|..+..|..|++ .|     +|++||.|.+||++|..+++|.+||++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~-~H-----t~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMS-MH-----LGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHH-HH-----SCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhh-cc-----ccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5677774 7777777777777777 66     7777777777777777777777777766

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.5e-14  Score=79.79  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=15.8

Q ss_pred             CCccccccCCccCCChHHHHHHHH-hhcCCCCCCcccC
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTK-YTHMNTSGPTIQP  281 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r-~h~~~~~~~~~C~  281 (304)
                      +|||.|.+|||+|+.+++|++|++ +|++++  ||+|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ek--py~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCC--CCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCc--CcCCc
Confidence            344444444444444444444433 344443  44443

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-14  Score=82.01  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=24.7

Q ss_pred             HHHhhcCCCCCCCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         232 HMRTTHIMPDTSEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       232 H~~~~H~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |++ .|     +++|||.|++|||+|...++|.+|+|+|+|+
T Consensus         3 H~~-~H-----t~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEW-QQ-----RERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCS-CC-----CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCc-cc-----CCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            555 56     6777777777777777777777777777664

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.8e-14  Score=76.02  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=25.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +|+|||.|.+|||+|..+++|.+|+|+|+|+
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            7888888888888888888888888888875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.9e-14  Score=78.74  Aligned_cols=38  Identities=24%  Similarity=0.567  Sum_probs=35.4

Q ss_pred             CCCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCcccccc
Q psy3485         210 KEKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYHCAF  252 (304)
Q Consensus       210 ~~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~C~~  252 (304)
                      -+|||+|.+||+.|+..+.|..||+.+|     +|+|||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~H-----t~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTS-----CCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCcc-----CCCcCcCCcC
Confidence            4799999999999999999999998689     9999999974

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-13  Score=75.43  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=26.1

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +|+|||.|.+||++|..+++|.+|+++|+++
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            8888888888888888888888888888876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=4.4e-13  Score=74.00  Aligned_cols=31  Identities=26%  Similarity=0.346  Sum_probs=26.3

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +|+|||.|.+|+|.|..+++|++|+|+|++.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            8888888888888888888888888888775

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-13  Score=78.51  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             HHHhhCCCCccccccchhhccCHHHHHHHHHhhc
Q psy3485         204 HLRTHTKEKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       204 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |+++|++++||+|++|||+|...+.|..|++ .|
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r-~H   35 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRR-TH   35 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHT-TT
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCc-cC
Confidence            5666777777777777777777777777777 66

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.5e-13  Score=69.92  Aligned_cols=28  Identities=11%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ||||.|.+|||+|..+++|.+|+|+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5677777777777777777777777765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.7e-13  Score=76.49  Aligned_cols=30  Identities=13%  Similarity=0.287  Sum_probs=19.4

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      +|+|||.|..||++|..+++|++|+++|.+
T Consensus         7 TgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           7 TGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            666666666666666666666666666643

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=4.7e-13  Score=75.52  Aligned_cols=34  Identities=12%  Similarity=0.050  Sum_probs=19.7

Q ss_pred             HHHhhcCCCCCCcccCCCcccccchhHHHHHHhhcc
Q psy3485         266 HTKYTHMNTSGPTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       266 H~r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      |.|+|+|++  ||+|++|||+|+++++|.+|+++|.
T Consensus         2 h~R~HTgeK--Py~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIK--PFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSS--SBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCcc--CeEeCCCCCEecCHHHHHHHHhcCc
Confidence            445555554  5666666666666666666665554

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.26  E-value=1.4e-12  Score=68.97  Aligned_cols=28  Identities=21%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |||.|++|||+|..++.|.+|+|+|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            5777777777777777777777777776

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-12  Score=71.13  Aligned_cols=29  Identities=31%  Similarity=0.650  Sum_probs=17.2

Q ss_pred             hCCCCccccccchhhccCHHHHHHHHHhhc
Q psy3485         208 HTKEKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       208 H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |+|+|||+|.+||++|..++.|..|++ .|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r-~H   30 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQR-VH   30 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHH-GG
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhcc-cc
Confidence            555666666666666666666666655 44

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=72.17  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +|||||.|++||++|+.+++|++|++.+|++
T Consensus         4 TgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           4 SGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            7777777777777777777777777655554

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-12  Score=72.49  Aligned_cols=32  Identities=34%  Similarity=0.692  Sum_probs=24.5

Q ss_pred             HhhCCCCccccccchhhccCHHHHHHHHHhhc
Q psy3485         206 RTHTKEKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       206 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |+|+|++||+|++||+.|+.+++|..|++.+|
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            45778888888888888888888888876566

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3e-12  Score=67.45  Aligned_cols=28  Identities=14%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |||.|.+|||+|..+++|.+|+|+|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            5777777777777777777777777776

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.8e-12  Score=71.69  Aligned_cols=34  Identities=9%  Similarity=-0.020  Sum_probs=31.9

Q ss_pred             HhhcCCCCCCcccCCCcccccchhHHHHHHhhcccC
Q psy3485         268 KYTHMNTSGPTIQPECIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       268 r~h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      |+|+|++  ||+|++|||+|+.+++|..|+++|++.
T Consensus         1 R~HTgek--Py~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEK--PYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCC--CEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCC--CEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            6899997  999999999999999999999999863

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.9e-12  Score=64.54  Aligned_cols=25  Identities=16%  Similarity=0.066  Sum_probs=15.2

Q ss_pred             CcccCCCcccccchhHHHHHHhhcc
Q psy3485         277 PTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      ||+|.+|||+|+.+++|.+|+|+|+
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCCC
Confidence            5666666666666666666666653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.16  E-value=8.6e-12  Score=65.83  Aligned_cols=28  Identities=32%  Similarity=0.600  Sum_probs=14.9

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      +||+|++||++|..++.|..|+++|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            3455555555555555555555555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.5e-12  Score=63.27  Aligned_cols=26  Identities=15%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             CccccccCCccCCChHHHHHHHHhhc
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |||.|.+|||+|..+++|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68889999999999999999988885

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.1e-11  Score=68.35  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=30.4

Q ss_pred             hcCCCCCCcccCCCcccccchhHHHHHHhhcccCC
Q psy3485         270 THMNTSGPTIQPECIKILWSFLSYFIWISVDVNRL  304 (304)
Q Consensus       270 h~~~~~~~~~C~~C~k~F~~~~~l~~h~~~~~~~~  304 (304)
                      |+|++  ||+|++|+|.|+.+++|..|+++|++-+
T Consensus         2 ~TGek--Py~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKR--PFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCS--CEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCc--cccCCCCCCcccChHHHHHHccccCCcC
Confidence            67886  9999999999999999999999998753

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.4e-11  Score=64.20  Aligned_cols=28  Identities=29%  Similarity=0.558  Sum_probs=16.4

Q ss_pred             CCCcccCCCcccccChHHHHHHHHhhCC
Q psy3485         183 RRNFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       183 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      ++||+|++|+++|..++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            3556666666666666666666665554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-11  Score=64.04  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCCCC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTKEK  212 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~  212 (304)
                      +||.|++||++|.+++.|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46666666666666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.3e-11  Score=63.79  Aligned_cols=28  Identities=14%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |||.|++  |||+|..+++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4677766  777777777777777777764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.7e-11  Score=64.27  Aligned_cols=28  Identities=14%  Similarity=0.538  Sum_probs=20.2

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |||.|++  |||+|..+++|++|+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5677766  777777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.5e-11  Score=66.84  Aligned_cols=33  Identities=15%  Similarity=0.186  Sum_probs=24.7

Q ss_pred             ccccc--CCccCCChHHHHHHHHhhcCCCCCCcccCC
Q psy3485         248 YHCAF--CNFTSPTQWAINRHTKYTHMNTSGPTIQPE  282 (304)
Q Consensus       248 ~~C~~--C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~  282 (304)
                      |.|+.  |||+|.+++.|++|+++|+|++  ||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgek--py~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTR--DYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSC--CCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCC--CEeCCC
Confidence            66765  7888888888888888877775  777763

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=6.1e-12  Score=74.64  Aligned_cols=31  Identities=19%  Similarity=0.496  Sum_probs=22.9

Q ss_pred             CCCCcccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +|++||.|.+  |+|+|..+++|++|+++|+|+
T Consensus        14 ~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             ETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            6777777766  777777777777777777776

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.6e-11  Score=66.78  Aligned_cols=32  Identities=22%  Similarity=0.644  Sum_probs=17.9

Q ss_pred             cccCC--CcccccChHHHHHHHHhhCCCCccccc
Q psy3485         186 FMCFA--CPYYCRYGSSMAIHLRTHTKEKPFACE  217 (304)
Q Consensus       186 ~~C~~--C~k~f~~~~~l~~H~~~H~~~~~~~C~  217 (304)
                      |.|+.  ||++|.++..|.+|+++|+|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            44544  555555555555555555555555554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-10  Score=62.42  Aligned_cols=28  Identities=18%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             Cccccc--cCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCA--FCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~--~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |||.|+  .|||+|+.+++|++|+|+|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            577774  4777777777777777777776

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=1.6e-11  Score=72.81  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             HHHHHHhhCCCCcccccc--chhhccCHHHHHHHHHhhc
Q psy3485         201 MAIHLRTHTKEKPFACEM--CNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       201 l~~H~~~H~~~~~~~C~~--C~k~F~~~~~L~~H~~~~H  237 (304)
                      |..|++ |+|++||+|.+  |++.|..++.|..|++ .|
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r-~H   43 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQ-TH   43 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHH-HH
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhcc-cc
Confidence            344443 66666666655  6666666666666666 55

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.4e-10  Score=59.81  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=15.4

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhhcC
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h~~  272 (304)
                      |||+|++  |||+|.+.++|++|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            3555555  55555555555555555554

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.8e-10  Score=59.21  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=17.3

Q ss_pred             CCcccCC--CcccccChHHHHHHHHhhCCC
Q psy3485         184 RNFMCFA--CPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       184 ~~~~C~~--C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      +||+|+.  |+++|.+.+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4566655  666666666666666666654

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3e-10  Score=60.15  Aligned_cols=27  Identities=11%  Similarity=0.017  Sum_probs=25.7

Q ss_pred             CCcccCC--CcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +||+|++  |||+|+++++|.+|+++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCC
Confidence            5999988  99999999999999999987

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.9e-10  Score=60.08  Aligned_cols=28  Identities=25%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             CCcccccc--CCccCCChHHHHHHHHhhcC
Q psy3485         245 ERRYHCAF--CNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       245 ~~~~~C~~--C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ||||.|+.  |||+|.+.++|++|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            45666655  66666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.9e-10  Score=58.79  Aligned_cols=29  Identities=41%  Similarity=0.598  Sum_probs=16.3

Q ss_pred             CCcccC--CCcccccChHHHHHHHHhhCCCC
Q psy3485         184 RNFMCF--ACPYYCRYGSSMAIHLRTHTKEK  212 (304)
Q Consensus       184 ~~~~C~--~C~k~f~~~~~l~~H~~~H~~~~  212 (304)
                      +||.|+  -|+++|.+.++|..|+++|+|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            355553  36666666666666666665553

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.4e-10  Score=57.75  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=13.1

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhh
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h  270 (304)
                      |||.|+.  |||+|.+.++|++|+|+|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3455544  555555555555555555

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=8.5e-10  Score=57.67  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=25.5

Q ss_pred             CCcccCC--CcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +||+|++  |||.|++.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5999988  99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.5e-09  Score=55.98  Aligned_cols=26  Identities=19%  Similarity=0.140  Sum_probs=24.7

Q ss_pred             CCcccCC--CcccccchhHHHHHHhhcc
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~~~~~  301 (304)
                      |||.|+.  |||+|++.++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5999999  9999999999999999995

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=3.6e-09  Score=56.65  Aligned_cols=28  Identities=11%  Similarity=0.030  Sum_probs=26.4

Q ss_pred             CCcccCC--CcccccchhHHHHHHhhcccC
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWISVDVNR  303 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~~~~~~~  303 (304)
                      +||.|++  |||.|++.++|.+|+++|..+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            5999999  999999999999999999875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.6e-09  Score=50.26  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=11.1

Q ss_pred             cccccCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      ++|+.|+|.|+++..|+.|||.|+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            344444444444444444444444

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.2e-08  Score=50.51  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=20.7

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |+||.|.+||+.|+.+...++|.++|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            567888888888888888888877773

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.6e-08  Score=47.60  Aligned_cols=23  Identities=35%  Similarity=0.626  Sum_probs=12.4

Q ss_pred             cccccchhhccCHHHHHHHHHhhc
Q psy3485         214 FACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      .+|++|+|.|+.+..|+.||| .|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr-~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMR-CH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGG-GC
T ss_pred             CccchhhhHhcchhHHHHHhh-cc
Confidence            455555555555555555555 44

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9.1e-08  Score=49.14  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=10.1

Q ss_pred             ccccCCccCCChHHHHHHHHhhcCC
Q psy3485         249 HCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       249 ~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .|+.|||.|.....|++|..+|+++
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~e   31 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGE   31 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSC
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCC
Confidence            3444444444444444444444443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=9.2e-08  Score=49.13  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CCccccccchhhccCHHHHHHHHHhhcCCCCCCCCCccc
Q psy3485         211 EKPFACEMCNYRAASKIAIYAHMRTTHIMPDTSEERRYH  249 (304)
Q Consensus       211 ~~~~~C~~C~k~F~~~~~L~~H~~~~H~~~~~~~~~~~~  249 (304)
                      .+...|+.|||.|+..+.|++|.. .|     +||+||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhkl-sh-----s~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKL-SH-----SGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG-GS-----CSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhc-cc-----CCCCCCC
Confidence            356789999999999999999999 99     9999984

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.1e-07  Score=47.66  Aligned_cols=27  Identities=22%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhhcC
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h~~  272 (304)
                      |||.|..  |+|+|...++|++|++++||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4777766  77777777777777777765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2e-07  Score=46.68  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |+||.|++|+..|+.+.-+..|.|+|-|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57888888888888888888888888775

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.7e-07  Score=45.64  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=12.7

Q ss_pred             cccccCCccCCChHHHHHHHHhhcC
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      +.|..|||+|.-++.|++|..+|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            3455555555555555555555544

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.9e-07  Score=45.66  Aligned_cols=29  Identities=21%  Similarity=0.517  Sum_probs=22.7

Q ss_pred             CCCcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         183 RRNFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       183 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      ++||.|++|+.+|.++..+..|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46788888888888888888888887653

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=2.9e-07  Score=45.46  Aligned_cols=26  Identities=38%  Similarity=0.742  Sum_probs=19.2

Q ss_pred             CCccccccchhhccCHHHHHHHHHhhc
Q psy3485         211 EKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       211 ~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      ++||.|++||+.|......++|.+ .|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k-iH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK-IH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG-GG
T ss_pred             CCCcccchhhhhhhcchhhhhhhh-hc
Confidence            467777777777777777777777 55

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.22  E-value=3.8e-07  Score=43.03  Aligned_cols=25  Identities=12%  Similarity=-0.104  Sum_probs=17.9

Q ss_pred             cccCCCcccccchhHHHHHHhhccc
Q psy3485         278 TIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       278 ~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |+|..|..+|..++.|.+|+|||-|
T Consensus         1 ykcglcersfveksalsrhqrvhkn   25 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHKN   25 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhcc
Confidence            5677777777777777777777754

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=5e-07  Score=43.32  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=18.7

Q ss_pred             ccCCCcccccChHHHHHHHHhhCCCC
Q psy3485         187 MCFACPYYCRYGSSMAIHLRTHTKEK  212 (304)
Q Consensus       187 ~C~~C~k~f~~~~~l~~H~~~H~~~~  212 (304)
                      +|++|.++|.+++.|..|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57777777777777777777777764

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=6.5e-07  Score=42.92  Aligned_cols=25  Identities=12%  Similarity=0.332  Sum_probs=18.5

Q ss_pred             ccccCCccCCChHHHHHHHHhhcCC
Q psy3485         249 HCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       249 ~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +|+.|.|+|.++..|+.|.|.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            5777777777777777777777776

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.1e-07  Score=44.19  Aligned_cols=28  Identities=21%  Similarity=0.511  Sum_probs=16.5

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ++||+|..|...-..++.|..|.|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3556666666555566666666666555

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.4e-07  Score=43.61  Aligned_cols=27  Identities=15%  Similarity=-0.005  Sum_probs=25.0

Q ss_pred             CCcccCCCcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |-+.|..|||.|...+.|.+|+-||++
T Consensus         1 r~hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           1 RVHVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             CcchHHHHhHHHHHHHHHHHHhhcccC
Confidence            358899999999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.4e-06  Score=42.63  Aligned_cols=27  Identities=48%  Similarity=0.968  Sum_probs=14.8

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      +||+|..|...-...+.|..|+|+|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.4e-06  Score=41.46  Aligned_cols=26  Identities=15%  Similarity=0.373  Sum_probs=19.6

Q ss_pred             cccccCCccCCChHHHHHHHHhhcCC
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      |.|++||..-+..+-|+.|.|+|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67777777777777777777777765

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.7e-06  Score=41.34  Aligned_cols=27  Identities=30%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             cccCCCcccccChHHHHHHHHhhCCCC
Q psy3485         186 FMCFACPYYCRYGSSMAIHLRTHTKEK  212 (304)
Q Consensus       186 ~~C~~C~k~f~~~~~l~~H~~~H~~~~  212 (304)
                      |.|+.||......+-|..|+|.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            677777777777777777777777764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.9e-06  Score=41.10  Aligned_cols=26  Identities=19%  Similarity=0.685  Sum_probs=13.9

Q ss_pred             CccccccCCccCCChHHHHHHHHhhc
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      +||+|..|+..-...++|+.|.|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            45555555555555555555555553

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.85  E-value=4.9e-06  Score=39.15  Aligned_cols=24  Identities=25%  Similarity=0.629  Sum_probs=15.7

Q ss_pred             cccccCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |+|..|.++|..++.|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            566666666666666666666653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.6e-06  Score=44.37  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             CCCCccccccCCccCCChHHHHHHHH
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r  268 (304)
                      +|-|||.|..|+|.|..+.++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46788888888888888888888863

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7e-06  Score=41.06  Aligned_cols=27  Identities=15%  Similarity=-0.004  Sum_probs=24.3

Q ss_pred             CCcccCC--CcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +||.|.+  |+|+|...+||..|++.+++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4899999  99999999999999997654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.77  E-value=5.8e-06  Score=40.49  Aligned_cols=24  Identities=21%  Similarity=0.034  Sum_probs=11.9

Q ss_pred             CcccCC--CcccccchhHHHHHHhhc
Q psy3485         277 PTIQPE--CIKILWSFLSYFIWISVD  300 (304)
Q Consensus       277 ~~~C~~--C~k~F~~~~~l~~h~~~~  300 (304)
                      ||+|+.  |+|.|++.+.|.+|-.||
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            444544  555555555555555444

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=6.3e-06  Score=40.48  Aligned_cols=25  Identities=36%  Similarity=0.829  Sum_probs=20.5

Q ss_pred             ccccccCCccCCChHHHHHHHHhhc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      ||.|..|+.+|+++.+|..||++-.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhh
Confidence            6888888888888888888887643

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.1e-05  Score=39.05  Aligned_cols=27  Identities=11%  Similarity=-0.016  Sum_probs=25.5

Q ss_pred             CCcccCCCcccccchhHHHHHHhhccc
Q psy3485         276 GPTIQPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      +||+|..|...-...++|..|.|+|.+
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs~   28 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHSD   28 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CCcccccccchhcchhhHhhhhhcccC
Confidence            599999999999999999999999975

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.71  E-value=1.2e-05  Score=39.37  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=20.1

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhh
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h  270 (304)
                      .||.|+.  |+++|+..+-|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788876  888888888888888777

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=1.5e-05  Score=43.06  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +.|.|.+|++.|.+..+|--||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            4577777777777777777777777655

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=2.7e-05  Score=38.13  Aligned_cols=28  Identities=14%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .-|.|..|...|+.+-.|+.||-+|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3567777777777777777777777664

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.1e-05  Score=40.62  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=11.5

Q ss_pred             cccccc--CCccCCChHHHHHHH-Hhhc
Q psy3485         247 RYHCAF--CNFTSPTQWAINRHT-KYTH  271 (304)
Q Consensus       247 ~~~C~~--C~k~F~~~~~L~~H~-r~h~  271 (304)
                      ||.|.+  |+|.|...+.--.|+ |+|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            444444  444444444444443 4443

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.52  E-value=3.6e-05  Score=41.50  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=12.1

Q ss_pred             CccccccchhhccCHHHHHHHHH
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      +.|.|.+|++.|.+-.+|--||+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~   26 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMN   26 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCccCCcccccchHh
Confidence            34555555555555555555555

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.5e-05  Score=37.24  Aligned_cols=28  Identities=29%  Similarity=0.736  Sum_probs=20.3

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|.+|...-+..++|+.|.++-|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4777777777777777777777766654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.41  E-value=4.1e-05  Score=37.57  Aligned_cols=28  Identities=14%  Similarity=0.298  Sum_probs=20.2

Q ss_pred             Ccccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         246 RRYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       246 ~~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      +||.|..  |.|.|.+-..|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677755  777777777777777777764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.6e-05  Score=39.26  Aligned_cols=27  Identities=15%  Similarity=0.082  Sum_probs=24.9

Q ss_pred             CCcccCC--CcccccchhHHHHHH-hhccc
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWI-SVDVN  302 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~-~~~~~  302 (304)
                      +||.|++  |+|.|++.+.-..|+ |+|.+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4999999  999999999999998 99975

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=7.9e-05  Score=36.42  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=14.3

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      .|.|..|...|.++-.|+.|+..|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            45555555555555555555555554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.39  E-value=4.4e-05  Score=38.43  Aligned_cols=26  Identities=15%  Similarity=0.255  Sum_probs=16.3

Q ss_pred             CcccCCCcccccChHHHHHHHH-hhCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLR-THTK  210 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~-~H~~  210 (304)
                      ||.|.+|++.|.++..|.+|.. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            5666666666666666666644 3554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=5e-05  Score=37.39  Aligned_cols=26  Identities=31%  Similarity=0.852  Sum_probs=16.6

Q ss_pred             CccccccchhhccCHHHHHHHHHhhc
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      +||.|.+|...-...++|+.|+++.|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            45666666666666666666666665

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=9.2e-05  Score=36.36  Aligned_cols=27  Identities=26%  Similarity=0.685  Sum_probs=15.3

Q ss_pred             CccccccCCccCCChHHHHHHHHhhcC
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      +||+|..|...-+..++|..|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            355555555555555555555555544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=7.6e-05  Score=40.37  Aligned_cols=26  Identities=27%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             CCCCccccccchhhccCHHHHHHHHH
Q psy3485         209 TKEKPFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       209 ~~~~~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      +|-+||.|.+|+|.|-++..+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46788999999999999888888865

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00011  Score=35.96  Aligned_cols=22  Identities=32%  Similarity=0.818  Sum_probs=19.7

Q ss_pred             ccccccchhhccCHHHHHHHHH
Q psy3485         213 PFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      ||.|..|.-+|..+.+|..||+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            6889999999999999999988

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00019  Score=38.23  Aligned_cols=31  Identities=16%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCCCccccc--cCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCA--FCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~--~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .++|||.|.  -|+.+|.+...|..|+..|.-.
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~KH~m~   34 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT   34 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTT
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhhheee
Confidence            357888884  4888888888888888777643

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.03  E-value=0.00017  Score=36.23  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=11.8

Q ss_pred             ccccccCCccCCChHHHHHHHHh
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      ||.|.+|++.|+.+.-|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            45555555555555555555443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00025  Score=34.75  Aligned_cols=26  Identities=27%  Similarity=0.787  Sum_probs=17.6

Q ss_pred             CccccccchhhccCHHHHHHHHHhhc
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      +||+|+.|.-.....++|..|++..|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            46777777766666777777766555

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00038  Score=37.05  Aligned_cols=28  Identities=25%  Similarity=0.504  Sum_probs=18.7

Q ss_pred             CCCCcccCC--CcccccChHHHHHHHHhhC
Q psy3485         182 MRRNFMCFA--CPYYCRYGSSMAIHLRTHT  209 (304)
Q Consensus       182 ~~~~~~C~~--C~k~f~~~~~l~~H~~~H~  209 (304)
                      .++||.|..  |+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            356777744  7777777777777766663

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.83  E-value=0.0003  Score=34.43  Aligned_cols=28  Identities=29%  Similarity=0.335  Sum_probs=17.1

Q ss_pred             CCcccCC--CcccccChHHHHHHHHhhCCC
Q psy3485         184 RNFMCFA--CPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       184 ~~~~C~~--C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      +||.|..  |.|.|.+...|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3566644  666666666666666666653

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0004  Score=33.55  Aligned_cols=25  Identities=20%  Similarity=0.101  Sum_probs=18.1

Q ss_pred             CcccCCCcccccchhHHHHHHhhcc
Q psy3485         277 PTIQPECIKILWSFLSYFIWISVDV  301 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~~~  301 (304)
                      |-+|+.|..+-+++..|.+|-|||-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4567777777777777777777764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00044  Score=33.27  Aligned_cols=25  Identities=20%  Similarity=0.610  Sum_probs=17.6

Q ss_pred             ccccccCCccCCChHHHHHHHHhhc
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      .|+|+.|+....+++.|+.|+|.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4677777777777777777776543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00031  Score=36.64  Aligned_cols=23  Identities=0%  Similarity=-0.035  Sum_probs=16.1

Q ss_pred             cCCCcccccchhHHHHHHhhccc
Q psy3485         280 QPECIKILWSFLSYFIWISVDVN  302 (304)
Q Consensus       280 C~~C~k~F~~~~~l~~h~~~~~~  302 (304)
                      |+-=++.|..++.|+.|||+|+|
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCC
Confidence            33445668888888888888776

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00065  Score=32.79  Aligned_cols=26  Identities=31%  Similarity=0.640  Sum_probs=21.2

Q ss_pred             CcccCCCcccccChHHHHHHHHhhCC
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTHTK  210 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H~~  210 (304)
                      |-+|+.|..+.+++++|+.|.|+|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            45788888888888888888888853

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00053  Score=32.04  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=14.1

Q ss_pred             ccccccCCccCCChHHHHHHHH
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r  268 (304)
                      ||+|..|...|..+..|..||.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            5666666666666666666654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00074  Score=32.34  Aligned_cols=21  Identities=19%  Similarity=0.195  Sum_probs=16.1

Q ss_pred             CcccCCCcccccchhHHHHHH
Q psy3485         277 PTIQPECIKILWSFLSYFIWI  297 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~  297 (304)
                      ||+|..|||.|-.+-+|+.|-
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            577888888877787877774

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00085  Score=31.32  Aligned_cols=22  Identities=27%  Similarity=0.650  Sum_probs=11.6

Q ss_pred             ccccccchhhccCHHHHHHHHH
Q psy3485         213 PFACEMCNYRAASKIAIYAHMR  234 (304)
Q Consensus       213 ~~~C~~C~k~F~~~~~L~~H~~  234 (304)
                      ||+|.-|...|-.+..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00095  Score=34.73  Aligned_cols=23  Identities=9%  Similarity=-0.087  Sum_probs=15.3

Q ss_pred             ccCCccCCChHHHHHHHHhhcCC
Q psy3485         251 AFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       251 ~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      ..=++-|+.+..|..|||+|+|+
T Consensus        11 ~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCcchhHHHHHHHHhhcCCC
Confidence            33345577777777777777764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.28  E-value=0.0016  Score=30.48  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=8.3

Q ss_pred             ccccCCccCCChHHHHHHHH
Q psy3485         249 HCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       249 ~C~~C~k~F~~~~~L~~H~r  268 (304)
                      .|+.|-|.|.++.++..|.+
T Consensus         3 pcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           3 PCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             ECTTTCCEESCHHHHHHHHH
T ss_pred             CCchhhHHhccccCceEEEE
Confidence            34444444444444444433

>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: KRAB domain (Kruppel-associated box)
superfamily: KRAB domain (Kruppel-associated box)
family: KRAB domain (Kruppel-associated box)
domain: hypotheical protein 2610044O15Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.001  Score=40.72  Aligned_cols=45  Identities=9%  Similarity=0.094  Sum_probs=40.6

Q ss_pred             cccccCCchHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCCCc
Q psy3485          18 PKLKKVNYPIIVARKMWTKLKKNHQNRNQKKMKSKTAKYWTGGEE   62 (304)
Q Consensus        18 ~~~~~~~~p~~iC~~C~~~l~~f~~~~~~~~~~~~~~~~~~~~~~   62 (304)
                      ..+.+.|++++|.++.|..|+.+|+.+++++|++++.++.+.+..
T Consensus         6 ~~VtFeDVaV~Fs~EEW~~Ld~~Qk~LyrdVm~Eny~~l~slg~~   50 (64)
T d1v65a_           6 SGVTYDDVHMNFTEEEWDLLDSSQKRLYEEVMLETYQNLTDIGYN   50 (64)
T ss_dssp             SCCCCCCCTTCCCHHHHHTSCHHHHHHHHHHHHHTTTSCCCSCCC
T ss_pred             CCEEEeEEEEEcCHHHHhCcCHHHHHHHHHhHHHHhhhhheeccC
Confidence            457899999999999999999999999999999999998877543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.002  Score=30.78  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=13.6

Q ss_pred             CcccCCCcccccChHHHHHHHHh
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRT  207 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~  207 (304)
                      ||.|..||+.+.++.+|..|..+
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            45666666666666666666443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.15  E-value=0.0016  Score=30.50  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=16.1

Q ss_pred             cccccchhhccCHHHHHHHHHhhc
Q psy3485         214 FACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |.|+.|-|.|..+.++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            566677777777777766666555

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0017  Score=33.23  Aligned_cols=26  Identities=19%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             ccccccCCccCCChHHHHHHHHhhcC
Q psy3485         247 RYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       247 ~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      .|.|..|||.|.++..+.+|-..-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48888888888888888888766555

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0022  Score=35.84  Aligned_cols=26  Identities=12%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             CccccccCCccCCChHHHHHHHHhhc
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      ..|.|..|||.|.....|++|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            36899999999999999999987764

>d1pzwa_ g.39.1.10 (A:) Transcription factor grauzone Cg33133-Pa, zinc finger associated domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Transcription factor grauzone Cg33133-Pa, zinc finger associated domain
domain: Transcription factor grauzone Cg33133-Pa, zinc finger associated domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.97  E-value=0.0008  Score=43.81  Aligned_cols=36  Identities=11%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             hhhHHHHhhCccc---ccCCchHHHHHHHHHHHhhhhhh
Q psy3485           8 PNLQQIQKTNPKL---KKVNYPIIVARKMWTKLKKNHQN   43 (304)
Q Consensus         8 ~~l~~~~~~~~~~---~~~~~p~~iC~~C~~~l~~f~~~   43 (304)
                      +.|.+++.....+   ..+++|..||..||..|+.||+.
T Consensus        27 ~~l~~~I~~~~~i~i~~~d~~p~~IC~~C~~~l~~~~~F   65 (80)
T d1pzwa_          27 SKVAEVLRQHFWFEVLPNDEISKVICNVCWTQVSEFHQF   65 (80)
T ss_dssp             CSHHHHHHHHCSSCCCSSCSSCSEEEHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHheeEEeecCCCCcHhHHHHHHHHHHHHHHH
Confidence            4566777665555   67889999999999999999965

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0048  Score=31.56  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=22.8

Q ss_pred             CCcccCCCcccccChHHHHHHHHhhCCC
Q psy3485         184 RNFMCFACPYYCRYGSSMAIHLRTHTKE  211 (304)
Q Consensus       184 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~  211 (304)
                      ..|.|..|||+|.++..+.+|-..-+|.
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCCC
Confidence            3589999999999999999997765553

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0039  Score=29.88  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=15.7

Q ss_pred             cccccchhhccCHHHHHHHHHhhc
Q psy3485         214 FACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |.|+.|+-....++.|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            566666666666666666666555

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.60  E-value=0.0044  Score=29.47  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=18.8

Q ss_pred             cccc--cCCccCCChHHHHHHHHhhc
Q psy3485         248 YHCA--FCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       248 ~~C~--~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |.|.  -|+|.|+....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            5564  38888888888888888776

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0045  Score=29.85  Aligned_cols=18  Identities=11%  Similarity=0.189  Sum_probs=11.2

Q ss_pred             CcccccchhHHHHHHhhc
Q psy3485         283 CIKILWSFLSYFIWISVD  300 (304)
Q Consensus       283 C~k~F~~~~~l~~h~~~~  300 (304)
                      |+|.|...++|..|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            666666666666666554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.08  E-value=0.0088  Score=29.60  Aligned_cols=27  Identities=26%  Similarity=0.671  Sum_probs=15.3

Q ss_pred             cccccc--CCccCCChHHHHHHHHhhcCC
Q psy3485         247 RYHCAF--CNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       247 ~~~C~~--C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .|.|..  |+-.|.....|..|.-.|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            455533  666666666666666666553

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0077  Score=33.55  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             CcccCCCcccccChHHHHHHHHhh
Q psy3485         185 NFMCFACPYYCRYGSSMAIHLRTH  208 (304)
Q Consensus       185 ~~~C~~C~k~f~~~~~l~~H~~~H  208 (304)
                      .|.|-+|||.|.....|++|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            477888888888888888887766

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.01  Score=28.60  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=14.7

Q ss_pred             CCccCCChHHHHHHHHhh
Q psy3485         253 CNFTSPTQWAINRHTKYT  270 (304)
Q Consensus       253 C~k~F~~~~~L~~H~r~h  270 (304)
                      |+|.|+..++++.|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            888888888888887666

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.022  Score=27.65  Aligned_cols=21  Identities=14%  Similarity=0.380  Sum_probs=13.7

Q ss_pred             cccccCCccCCChHHHHHHHH
Q psy3485         248 YHCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       248 ~~C~~C~k~F~~~~~L~~H~r  268 (304)
                      |.|..|||..++...++.|.-
T Consensus         3 ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEe
Confidence            566666666666666666643

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.036  Score=26.83  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=13.0

Q ss_pred             cccccchhhccCHHHHHHHHHhhc
Q psy3485         214 FACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       214 ~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      |.|..|||..++...++.|...-|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             eechhHHHHHhhccCceEEEeecc
Confidence            555555555555555555544343

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.0075  Score=37.22  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=21.2

Q ss_pred             CCCccccccCCccCCChHHHHHHHHh
Q psy3485         244 EERRYHCAFCNFTSPTQWAINRHTKY  269 (304)
Q Consensus       244 ~~~~~~C~~C~k~F~~~~~L~~H~r~  269 (304)
                      |...|-|..|+|.|.+...|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            44568899999999999999888764

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.67  E-value=0.02  Score=28.88  Aligned_cols=23  Identities=17%  Similarity=0.476  Sum_probs=19.5

Q ss_pred             CccccccCCccCCChHHHHHHHH
Q psy3485         246 RRYHCAFCNFTSPTQWAINRHTK  268 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~L~~H~r  268 (304)
                      ..|.|.-||-.|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            35889999999999999999863

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.14  E-value=0.032  Score=28.10  Aligned_cols=23  Identities=9%  Similarity=-0.157  Sum_probs=21.0

Q ss_pred             CCcccCCCcccccchhHHHHHHh
Q psy3485         276 GPTIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      ..|.|.-||-.|++.+.|-.|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            36999999999999999999975

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.032  Score=33.68  Aligned_cols=12  Identities=25%  Similarity=0.492  Sum_probs=5.0

Q ss_pred             cccCCCcccccC
Q psy3485         186 FMCFACPYYCRY  197 (304)
Q Consensus       186 ~~C~~C~k~f~~  197 (304)
                      |+|+.|+++|+.
T Consensus        15 y~Cp~C~~~ys~   26 (62)
T d1vd4a_          15 FKCPVCSSTFTD   26 (62)
T ss_dssp             EECSSSCCEEEH
T ss_pred             eECCCCCCCcch
Confidence            444444444433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.94  E-value=0.049  Score=25.73  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=13.9

Q ss_pred             CCcccccChHHHHHHHHhhC
Q psy3485         190 ACPYYCRYGSSMAIHLRTHT  209 (304)
Q Consensus       190 ~C~k~f~~~~~l~~H~~~H~  209 (304)
                      -|++.|.....|..|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            37777777777777776664

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.88  E-value=0.043  Score=29.31  Aligned_cols=27  Identities=26%  Similarity=0.630  Sum_probs=19.6

Q ss_pred             CCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         245 ERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       245 ~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      ++.|.|..||..             |.|+.  |-+|++||..
T Consensus         3 ~~~~~C~vCG~i-------------~~g~~--P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYT-------------AVDEA--PEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCE-------------EESCC--CSBCTTTCCB
T ss_pred             CcEEECCCCCCE-------------ecCCC--CCcCCCCCCc
Confidence            356888899854             55653  7889999864

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.86  E-value=0.053  Score=28.73  Aligned_cols=28  Identities=14%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             CCCccccccCCccCCChHHHHHHHHhhcCCCCCCcccCCCccc
Q psy3485         244 EERRYHCAFCNFTSPTQWAINRHTKYTHMNTSGPTIQPECIKI  286 (304)
Q Consensus       244 ~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~~~~~~~C~~C~k~  286 (304)
                      +++.|.|..||..             |.|+  .|-+|++||..
T Consensus         2 ~~~~~vC~vCGyi-------------~~g~--~Pe~CPvCg~~   29 (36)
T d1yuza2           2 DDKFHLCPICGYI-------------HKGE--DFEKCPICFRP   29 (36)
T ss_dssp             SCCEEECSSSCCE-------------EESS--CCSBCTTTCCB
T ss_pred             CCCEEECCCCCCE-------------eeCC--CCCcCCCCCCc
Confidence            3467889999854             5565  47889999864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.72  E-value=0.039  Score=27.21  Aligned_cols=18  Identities=22%  Similarity=0.436  Sum_probs=9.9

Q ss_pred             chhhccCHHHHHHHHHhhc
Q psy3485         219 CNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       219 C~k~F~~~~~L~~H~~~~H  237 (304)
                      |+-.|.....|..|+- .|
T Consensus        11 C~A~ynk~wkL~AHLc-kH   28 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLS-KH   28 (31)
T ss_dssp             GCCEESSHHHHHHHHH-HH
T ss_pred             cchhhccchhhhHHhh-hh
Confidence            5555555555555555 44

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.03  Score=33.81  Aligned_cols=17  Identities=24%  Similarity=0.446  Sum_probs=8.1

Q ss_pred             CccccccCCccCCChHH
Q psy3485         246 RRYHCAFCNFTSPTQWA  262 (304)
Q Consensus       246 ~~~~C~~C~k~F~~~~~  262 (304)
                      .-|.|+.|+++|..--.
T Consensus        13 ~~y~Cp~C~~~ys~Lda   29 (62)
T d1vd4a_          13 ASFKCPVCSSTFTDLEA   29 (62)
T ss_dssp             SEEECSSSCCEEEHHHH
T ss_pred             CceECCCCCCCcchhhH
Confidence            34555555555544433

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.46  E-value=0.06  Score=27.47  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             CCCccccccCCccCCChHHHHHHHHhhc
Q psy3485         244 EERRYHCAFCNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       244 ~~~~~~C~~C~k~F~~~~~L~~H~r~h~  271 (304)
                      |+-.|.|..|.+.+.+.+++-+|.-+-|
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            3445667777777777777776655433

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.074  Score=31.67  Aligned_cols=31  Identities=13%  Similarity=0.371  Sum_probs=25.7

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcCC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHMN  273 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~~  273 (304)
                      .+..-|+|.+|.-.|.+...|..|...|..+
T Consensus        14 ~~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          14 LQNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             cCCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            4556799999999999999999998888754

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.091  Score=25.29  Aligned_cols=17  Identities=29%  Similarity=0.532  Sum_probs=9.2

Q ss_pred             CCccCCChHHHHHHHHh
Q psy3485         253 CNFTSPTQWAINRHTKY  269 (304)
Q Consensus       253 C~k~F~~~~~L~~H~r~  269 (304)
                      |||-|+++..|+.|.+.
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            55555555555555543

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.088  Score=25.34  Aligned_cols=19  Identities=11%  Similarity=0.142  Sum_probs=14.5

Q ss_pred             ccchhhccCHHHHHHHHHh
Q psy3485         217 EMCNYRAASKIAIYAHMRT  235 (304)
Q Consensus       217 ~~C~k~F~~~~~L~~H~~~  235 (304)
                      +-||+.|+++..|+-|.+.
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            3488888888888888773

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.56  E-value=0.087  Score=26.84  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=15.7

Q ss_pred             CccccccchhhccCHHHHHHHHHhhc
Q psy3485         212 KPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       212 ~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      .-|+|.+|.+.|...+++-+|....|
T Consensus         7 ~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           7 HTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            34666666666666666666665555

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.045  Score=33.59  Aligned_cols=23  Identities=4%  Similarity=-0.061  Sum_probs=21.3

Q ss_pred             CcccCCCcccccchhHHHHHHhh
Q psy3485         277 PTIQPECIKILWSFLSYFIWISV  299 (304)
Q Consensus       277 ~~~C~~C~k~F~~~~~l~~h~~~  299 (304)
                      .|.|..|+|.|.+...|..|++.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            59999999999999999999873

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.48  E-value=0.15  Score=24.60  Aligned_cols=19  Identities=21%  Similarity=0.448  Sum_probs=11.1

Q ss_pred             CCccCCChHHHHHHHHhhc
Q psy3485         253 CNFTSPTQWAINRHTKYTH  271 (304)
Q Consensus       253 C~k~F~~~~~L~~H~r~h~  271 (304)
                      |+-.|.++.+++.|....|
T Consensus        10 cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3          10 CDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CCCEESSHHHHHHHHHHHT
T ss_pred             cceEEeehHHHHHHHhhhc
Confidence            6666666666666654443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.14  E-value=0.17  Score=24.39  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=14.8

Q ss_pred             CcccC--CCcccccChHHHHHHHHh
Q psy3485         185 NFMCF--ACPYYCRYGSSMAIHLRT  207 (304)
Q Consensus       185 ~~~C~--~C~k~f~~~~~l~~H~~~  207 (304)
                      .|.|+  -|+.+|.+++++..|..+
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHhh
Confidence            35554  377777777777777555

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.95  E-value=0.11  Score=28.63  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=17.2

Q ss_pred             CCccccccchhhccCHHHHHHHHHhhc
Q psy3485         211 EKPFACEMCNYRAASKIAIYAHMRTTH  237 (304)
Q Consensus       211 ~~~~~C~~C~k~F~~~~~L~~H~~~~H  237 (304)
                      +.|-.|++|+-......+|++|.-..|
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            455666666666666666666665555

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.099  Score=29.06  Aligned_cols=22  Identities=18%  Similarity=-0.147  Sum_probs=17.2

Q ss_pred             CCcccCCCcccccchhHHHHHH
Q psy3485         276 GPTIQPECIKILWSFLSYFIWI  297 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~  297 (304)
                      ++-.|++|+..|+.+.+...||
T Consensus         5 p~~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           5 TKPECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             CCSCCTTTTCCCCSSSCHHHHH
T ss_pred             CcccCcccceeeeeecchHhhh
Confidence            3577888888888888887776

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.78  E-value=0.33  Score=26.68  Aligned_cols=30  Identities=20%  Similarity=0.439  Sum_probs=22.6

Q ss_pred             CCCCccccccCCccCCChHHHHHHHHhhcC
Q psy3485         243 SEERRYHCAFCNFTSPTQWAINRHTKYTHM  272 (304)
Q Consensus       243 ~~~~~~~C~~C~k~F~~~~~L~~H~r~h~~  272 (304)
                      ..+.|-.|++|+-....+.+|++|...-|=
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            346677888888888888888888765443

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.47  Score=26.68  Aligned_cols=25  Identities=8%  Similarity=0.041  Sum_probs=15.5

Q ss_pred             CCcccCC--CcccccchhHHHHHHhhc
Q psy3485         276 GPTIQPE--CIKILWSFLSYFIWISVD  300 (304)
Q Consensus       276 ~~~~C~~--C~k~F~~~~~l~~h~~~~  300 (304)
                      |||.|-+  |-..|.-..+|+.|+++.
T Consensus        19 rpyrcvhqgc~aaftiq~nlilhy~av   45 (61)
T d1x3ca1          19 RPYRCVHQGCFAAFTIQQNLILHYQAV   45 (61)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHH
T ss_pred             CceeeeccchhhhhhhhhhHHHHHHHH
Confidence            4666654  666666666666666643

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.07  E-value=0.64  Score=27.47  Aligned_cols=28  Identities=18%  Similarity=0.406  Sum_probs=21.8

Q ss_pred             CCCCcccCCCcccccChHHHHHHHHhhC
Q psy3485         182 MRRNFMCFACPYYCRYGSSMAIHLRTHT  209 (304)
Q Consensus       182 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~  209 (304)
                      +...|+|..|...|.+...|..|+..|.
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            3456888888888888888888887774

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=0.53  Score=23.99  Aligned_cols=23  Identities=13%  Similarity=0.003  Sum_probs=15.9

Q ss_pred             CCcccCCCcccccchhHHHHHHh
Q psy3485         276 GPTIQPECIKILWSFLSYFIWIS  298 (304)
Q Consensus       276 ~~~~C~~C~k~F~~~~~l~~h~~  298 (304)
                      +.|.|+.|=|-..++..|.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            35777777777777777777753